Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 226 of 253
Found at i:74026843 original size:14 final size:14
Alignment explanation
Indices: 74026826--74026856 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74026816 ATAATATAGT
74026826 ATAATGAATAAAGA
1 ATAATGAATAAAGA
*
74026840 ATAATGAGTAAAGA
1 ATAATGAATAAAGA
74026854 ATA
1 ATA
74026857 GAAAAGTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (14 bp):
ATAATGAATAAAGA
Found at i:74026890 original size:4 final size:4
Alignment explanation
Indices: 74026881--74026959 Score: 70
Period size: 4 Copynumber: 19.2 Consensus size: 4
74026871 AGCAAACGTG
* * * **
74026881 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGACT A-AC AGAG AGCAA ACGTG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA-A AGAA AGAA AG-AA A-GAA
*
74026931 AGAA AGAA AGAA GGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
74026960 TAAAAAAGGG
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
3 1 0.02
4 55 0.90
5 4 0.07
6 1 0.02
ACGTcount: A:0.66, C:0.05, G:0.27, T:0.03
Consensus pattern (4 bp):
AGAA
Found at i:74026919 original size:50 final size:50
Alignment explanation
Indices: 74026865--74026959 Score: 181
Period size: 50 Copynumber: 1.9 Consensus size: 50
74026855 TAGAAAAGTT
74026865 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
1 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
*
74026915 ACAGAGAGCAAACGTGAGAAAGAAAGAAGGAAAGAAAGAAAGAAA
1 ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
74026960 TAAAAAAGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.62, C:0.07, G:0.27, T:0.03
Consensus pattern (50 bp):
ACAGAGAGCAAACGTGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACTA
Found at i:74029187 original size:9 final size:9
Alignment explanation
Indices: 74029162--74029228 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
74029152 TCATGACAAT
74029162 TATTATTAC
1 TATTATTAC
* *
74029171 TATCATTAG
1 TATTATTAC
74029180 TATTATTAC
1 TATTATTAC
74029189 -ATT-TTAC
1 TATTATTAC
** *
74029196 TACCATTAT
1 TATTATTAC
74029205 TATTATTTA-
1 TATTA-TTAC
*
74029214 TATTATTAT
1 TATTATTAC
74029223 TATTAT
1 TATTAT
74029229 CGTTTTCGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
7 4 0.09
8 7 0.16
9 31 0.69
10 3 0.07
ACGTcount: A:0.33, C:0.09, G:0.01, T:0.57
Consensus pattern (9 bp):
TATTATTAC
Found at i:74031991 original size:21 final size:21
Alignment explanation
Indices: 74031965--74032007 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
74031955 AAATGAATAA
74031965 AAAAAGTTTGGAAACCATCAT
1 AAAAAGTTTGGAAACCATCAT
74031986 AAAAAGTTTGGAAACCATCAT
1 AAAAAGTTTGGAAACCATCAT
74032007 A
1 A
74032008 CAAGTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.23
Consensus pattern (21 bp):
AAAAAGTTTGGAAACCATCAT
Found at i:74033469 original size:15 final size:14
Alignment explanation
Indices: 74033420--74033470 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
74033410 AAAGTGCCAA
74033420 AAATAAT-AAA-AG
1 AAATAATAAAATAG
*
74033432 AAATAATAAAATAAC
1 AAATAATAAAAT-AG
*
74033447 AAAAAATAAAATATG
1 AAATAATAAAATA-G
74033462 AAATAATAA
1 AAATAATAA
74033471 TGACAATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
15 20 0.65
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (14 bp):
AAATAATAAAATAG
Found at i:74035301 original size:13 final size:13
Alignment explanation
Indices: 74035283--74035312 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
74035273 TTCCTGTAAA
74035283 CATTTCATACAAC
1 CATTTCATACAAC
*
74035296 CATTTCATATAAC
1 CATTTCATACAAC
74035309 CATT
1 CATT
74035313 CCATCTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (13 bp):
CATTTCATACAAC
Found at i:74035482 original size:46 final size:46
Alignment explanation
Indices: 74035406--74035718 Score: 430
Period size: 46 Copynumber: 6.8 Consensus size: 46
74035396 TGATGTCATA
* * * * *
74035406 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCACGTTGCCATG
* * *** *
74035452 GTATCTTTCAACCATTGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATG
* *
74035499 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
*
74035545 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
*
74035591 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* *
74035637 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* *
74035683 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCA
74035719 GAGAGCACAC
Statistics
Matches: 247, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 209 0.85
47 38 0.15
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
Found at i:74040804 original size:10 final size:10
Alignment explanation
Indices: 74040789--74040830 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
74040779 TTTTATTGTT
74040789 TTTATTTTGG
1 TTTATTTTGG
**
74040799 TTTATTTTTA
1 TTTATTTTGG
*
74040809 TTTTTTTTGG
1 TTTATTTTGG
74040819 TTT-TTTTGG
1 TTTATTTTGG
74040828 TTT
1 TTT
74040831 TCTAACAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (10 bp):
TTTATTTTGG
Found at i:74040818 original size:20 final size:19
Alignment explanation
Indices: 74040780--74040825 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
74040770 CTAATGGACT
*
74040780 TTTATTGTTTTTATTTTGG
1 TTTATTTTTTTTATTTTGG
*
74040799 TTTATTTTTATTTTTTTTGG
1 TTTATTTTT-TTTATTTTGG
74040819 TTT-TTTT
1 TTTATTTT
74040826 GGTTTTCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.09, C:0.00, G:0.11, T:0.80
Consensus pattern (19 bp):
TTTATTTTTTTTATTTTGG
Found at i:74041843 original size:18 final size:18
Alignment explanation
Indices: 74041811--74041846 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74041801 CTTTCTAATT
74041811 AAATTTTTATAATATAAA
1 AAATTTTTATAATATAAA
74041829 AAATATTTTAT-ATATAAA
1 AAAT-TTTTATAATATAAA
74041847 TGATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATTTTTATAATATAAA
Found at i:74044005 original size:11 final size:11
Alignment explanation
Indices: 74043989--74044015 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
74043979 GGTTGCTATA
74043989 AACATGTCATC
1 AACATGTCATC
74044000 AACATGTCATC
1 AACATGTCATC
74044011 AACAT
1 AACAT
74044016 AAAGGAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (11 bp):
AACATGTCATC
Found at i:74048748 original size:44 final size:44
Alignment explanation
Indices: 74048680--74048770 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
74048670 ATTACATGTA
*
74048680 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
* *
74048724 TCGCATCCGTAATGAACTCAGACCAACTCAATGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
74048768 TCG
1 TCG
74048771 GATGCCTCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCGGATGC
Found at i:74050208 original size:24 final size:24
Alignment explanation
Indices: 74050180--74050226 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
74050170 TTTTTCTTTC
*
74050180 TTTCTCAGGTAAAGGCAAATCTCA
1 TTTCTCAGGCAAAGGCAAATCTCA
74050204 TTTCTCAGGCAAAGGCAAATCTC
1 TTTCTCAGGCAAAGGCAAATCTC
74050227 TCTTTCTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (24 bp):
TTTCTCAGGCAAAGGCAAATCTCA
Found at i:74052754 original size:5 final size:5
Alignment explanation
Indices: 74052744--74052770 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
74052734 CGAATTGTGG
74052744 AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
74052771 GAACACAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:74054778 original size:32 final size:32
Alignment explanation
Indices: 74054720--74054790 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
74054710 TTGTTGGATT
*
74054720 TTGAAATTATTATGTCTTGAATTTGTTACATA
1 TTGAAATTATTATGTCTTGAACTTGTTACATA
* * **
74054752 TTGAATTTATTATGT-TTTAAGCTTGTTGGATA
1 TTGAAATTATTATGTCTTGAA-CTTGTTACATA
74054784 TTGAAAT
1 TTGAAAT
74054791 GATTGAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 4 0.12
32 28 0.88
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (32 bp):
TTGAAATTATTATGTCTTGAACTTGTTACATA
Found at i:74056074 original size:17 final size:16
Alignment explanation
Indices: 74056039--74056080 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
74056029 TAAAAATAGT
*
74056039 TTAAAATATAAATTAA
1 TTAATATATAAATTAA
*
74056055 TTAATATATATAATTTA
1 TTAATATATA-AATTAA
74056072 TTAATATAT
1 TTAATATAT
74056081 TTAAAAACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAATATATAAATTAA
Found at i:74056190 original size:14 final size:14
Alignment explanation
Indices: 74056171--74056201 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74056161 CCAGAAAAGC
74056171 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
74056185 AAATCATTTTCCGG
1 AAATCATTTTCCAG
74056199 AAA
1 AAA
74056202 ATATTGTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:74057543 original size:37 final size:37
Alignment explanation
Indices: 74057493--74057563 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
74057483 ACCTTTAGCT
* *
74057493 CAGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
74057530 CAGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTT
74057564 TAGAGCTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:74057857 original size:49 final size:47
Alignment explanation
Indices: 74057683--74058044 Score: 573
Period size: 47 Copynumber: 7.6 Consensus size: 47
74057673 CCCTTCGGGA
* * * * * *
74057683 CTTATCACATTTATACACTTTCATATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
74057730 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74057777 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74057824 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74057873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74057922 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74057971 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74058018 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
74058045 ACCAACCCTT
Statistics
Matches: 300, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 2 0.01
47 154 0.51
49 144 0.48
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74057872 original size:96 final size:96
Alignment explanation
Indices: 74057683--74058044 Score: 581
Period size: 98 Copynumber: 3.8 Consensus size: 96
74057673 CCCTTCGGGA
* * * * * * * *
74057683 CTTATCACATTTATACACTTTCATATCCATCACGTTGGCCACTCA-GCCCTGTCAC--ATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATATA
74057745 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
74057777 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74057842 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74057873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
74057938 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
74057971 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74058034 ACTTTCACATT
66 ACTTTCACATT
74058045 ACCAACCCTT
Statistics
Matches: 253, Mismatches: 10, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
93 2 0.01
94 62 0.25
96 94 0.37
98 95 0.38
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74058374 original size:40 final size:40
Alignment explanation
Indices: 74058269--74058411 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
74058259 GCTACTCGTT
*
74058269 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74058309 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74058349 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
74058390 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
74058412 AGACATCATT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 74 0.82
41 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74060700 original size:132 final size:132
Alignment explanation
Indices: 74060463--74060727 Score: 530
Period size: 132 Copynumber: 2.0 Consensus size: 132
74060453 AATACAAAAC
74060463 ACATATTTTATTTATCAACATTCATCATTGTCGTCCACTAAGTTAATAGTGGTCCATTTGACATG
1 ACATATTTTATTTATCAACATTCATCATTGTCGTCCACTAAGTTAATAGTGGTCCATTTGACATG
74060528 CAAGTCCTCCTTGTAATATACCATGCATTATTCAGCCCTCTAAATTCTTCCTATCACATTTTTTT
66 CAAGTCCTCCTTGTAATATACCATGCATTATTCAGCCCTCTAAATTCTTCCTATCACATTTTTTT
74060593 TA
131 TA
74060595 ACATATTTTATTTATCAACATTCATCATTGTCGTCCACTAAGTTAATAGTGGTCCATTTGACATG
1 ACATATTTTATTTATCAACATTCATCATTGTCGTCCACTAAGTTAATAGTGGTCCATTTGACATG
74060660 CAAGTCCTCCTTGTAATATACCATGCATTATTCAGCCCTCTAAATTCTTCCTATCACATTTTTTT
66 CAAGTCCTCCTTGTAATATACCATGCATTATTCAGCCCTCTAAATTCTTCCTATCACATTTTTTT
74060725 TA
131 TA
74060727 A
1 A
74060728 AAAAAAATTC
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 133 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (132 bp):
ACATATTTTATTTATCAACATTCATCATTGTCGTCCACTAAGTTAATAGTGGTCCATTTGACATG
CAAGTCCTCCTTGTAATATACCATGCATTATTCAGCCCTCTAAATTCTTCCTATCACATTTTTTT
TA
Found at i:74062731 original size:20 final size:20
Alignment explanation
Indices: 74062693--74062738 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
74062683 TGTTCAATGT
*
74062693 TGTTTTTGATAAGTTTGTAA
1 TGTTTTTGATAAGTGTGTAA
* *
74062713 TGTTTTTGTTATGTGTGTAA
1 TGTTTTTGATAAGTGTGTAA
*
74062733 AGTTTT
1 TGTTTT
74062739 GGATCAATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.59
Consensus pattern (20 bp):
TGTTTTTGATAAGTGTGTAA
Found at i:74064313 original size:22 final size:23
Alignment explanation
Indices: 74064288--74064334 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
74064278 TTCTATTGTC
74064288 GATTAAATGTT-TAATTAGCCAT
1 GATTAAATGTTGTAATTAGCCAT
74064310 GATTAAATGTTGTAATTAGCCAT
1 GATTAAATGTTGTAATTAGCCAT
74064333 GA
1 GA
74064335 ACTCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (23 bp):
GATTAAATGTTGTAATTAGCCAT
Found at i:74065454 original size:20 final size:20
Alignment explanation
Indices: 74065425--74065463 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74065415 ATTTATCCAT
*
74065425 TTTTTATTTTTATTTTAATA
1 TTTTTATTTTTAATTTAATA
*
74065445 TTTTTGTTTTTAATTTAAT
1 TTTTTATTTTTAATTTAAT
74065464 TGTTACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTATTTTTAATTTAATA
Found at i:74073672 original size:14 final size:14
Alignment explanation
Indices: 74073655--74073685 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74073645 TATTTCAAAA
74073655 AAAAAAACTATTTT
1 AAAAAAACTATTTT
*
74073669 AAAAAAGCTATTTT
1 AAAAAAACTATTTT
74073683 AAA
1 AAA
74073686 TGAAACAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAAAAACTATTTT
Found at i:74073672 original size:18 final size:17
Alignment explanation
Indices: 74073641--74073674 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
74073631 CACTTTCTTG
74073641 AAAATATTTCAAAAAAA
1 AAAATATTTCAAAAAAA
*
74073658 AAAACTATTTTAAAAAA
1 AAAA-TATTTCAAAAAA
74073675 GCTATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATATTTCAAAAAAA
Found at i:74074257 original size:84 final size:84
Alignment explanation
Indices: 74074163--74074334 Score: 317
Period size: 84 Copynumber: 2.0 Consensus size: 84
74074153 TATTGCCAAC
* *
74074163 AAAATCAAAATGAAGATGCAAAACTAGTTCATATTTGAACCATCTTCTTTGGCATCAGCTGAATT
1 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTGAATT
*
74074228 ACATTACATCTATATTAAT
66 ACAGTACATCTATATTAAT
74074247 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTGAATT
1 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTGAATT
74074312 ACAGTACATCTATATTAAT
66 ACAGTACATCTATATTAAT
74074331 AAAA
1 AAAA
74074335 CCTGCAACAA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (84 bp):
AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTGAATT
ACAGTACATCTATATTAAT
Found at i:74076169 original size:31 final size:31
Alignment explanation
Indices: 74076123--74076206 Score: 100
Period size: 31 Copynumber: 2.6 Consensus size: 31
74076113 ATCTAAAAGT
74076123 TACATATAAGTTTTGATTTAATGTATAATATTA
1 TACATA-AA-TTTTGATTTAATGTATAATATTA
* *
74076156 TACATAAATTTTGATTT--TTTATAATTTTA
1 TACATAAATTTTGATTTAATGTATAATATTA
74076185 TACAATAAAATTTTGATTTAAT
1 TAC-AT-AAATTTTGATTTAAT
74076207 TCAATATTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
29 13 0.29
30 2 0.04
31 21 0.47
32 2 0.04
33 7 0.16
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (31 bp):
TACATAAATTTTGATTTAATGTATAATATTA
Found at i:74076546 original size:24 final size:23
Alignment explanation
Indices: 74076514--74076566 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
74076504 AAATATTACA
*
74076514 TATACAAAT-AATTATATTTATATT
1 TATAAAAATAAATT-TATTTAT-TT
74076538 TATAAAAATAAATTTATTTATTT
1 TATAAAAATAAATTTATTTATTT
*
74076561 TTTAAA
1 TATAAA
74076567 TATGTACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 7 0.27
24 15 0.58
25 4 0.15
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TATAAAAATAAATTTATTTATTT
Found at i:74079648 original size:43 final size:42
Alignment explanation
Indices: 74079581--74079750 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 42
74079571 TATAGCTCGT
* *
74079581 ACAATGCCATATCCCAAATATGGTCTTACATGTTATCACATA
1 ACAATGCCATAGCCCAAATATGGTCTTACATGTAATCACATA
* ** * * *
74079623 TCAATGCCGATAGCCCAGCTATGGTCTTACACGAAATCAAATA
1 ACAATGCC-ATAGCCCAAATATGGTCTTACATGTAATCACATA
*
74079666 ACGATGCCA-ATGTCCCAAATATGGTCTTACATGTAATCACATA
1 ACAATGCCATA-G-CCCAAATATGGTCTTACATGTAATCACATA
** * **
74079709 ATGATGCCA-ATGTCCCAAACATGGTCTTACACATAATCACAT
1 ACAATGCCATA-G-CCCAAATATGGTCTTACATGTAATCACAT
74079751 CTCGTTAATC
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
41 1 0.01
42 9 0.08
43 96 0.91
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (42 bp):
ACAATGCCATAGCCCAAATATGGTCTTACATGTAATCACATA
Found at i:74079747 original size:86 final size:85
Alignment explanation
Indices: 74079584--74079740 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 85
74079574 AGCTCGTACA
* * *
74079584 ATGCCATATCCCAAATATGGTCTTACATGTTATCACATATCAATGCCGATAGCCCAGCTATGGTC
1 ATGCCATATCCCAAATATGGTCTTACATGTAATCACATATCAATGCCAATAGCCCAACTATGGTC
74079649 TTACACGAAATCAAATAACG
66 TTACACGAAATCAAATAACG
* *
74079669 ATGCCAATGTCCCAAATATGGTCTTACATGTAATCACATAAT-GATGCCAAT-GTCCCAAAC-AT
1 ATGCC-ATATCCCAAATATGGTCTTACATGTAATCACAT-ATCAATGCCAATAG-CCC-AACTAT
74079731 GGTCTTACAC
62 GGTCTTACAC
74079741 ATAATCACAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 6 0.10
86 53 0.84
87 4 0.06
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (85 bp):
ATGCCATATCCCAAATATGGTCTTACATGTAATCACATATCAATGCCAATAGCCCAACTATGGTC
TTACACGAAATCAAATAACG
Found at i:74086788 original size:19 final size:19
Alignment explanation
Indices: 74086760--74086871 Score: 147
Period size: 19 Copynumber: 5.8 Consensus size: 19
74086750 AATCTTTAAG
*
74086760 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74086779 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
74086798 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
74086815 GATATGCAGTCTTAGATAT
1 GATATGCAATCTTAGATAT
74086834 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
74086855 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
74086872 GATTTAATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.20
19 46 0.55
20 3 0.04
21 9 0.11
22 8 0.10
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:74086790 original size:36 final size:37
Alignment explanation
Indices: 74086750--74086874 Score: 116
Period size: 36 Copynumber: 3.4 Consensus size: 37
74086740 ATGGAAATAT
74086750 AATCTTTA-AGGAT-ATACAATCTTAGATATGATATGC
1 AATCTTTAGA-GATGATACAATCTTAGATATGATATGC
*
74086786 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGAGATGATACAATCTTAGATATGATATGC
* * * *
74086822 AGTC-TTAGATATGATATGCAATCTTGAAGATATGATCTTGT
1 AATCTTTAGAGATGATA--CAATCTT--AGATATGAT-ATGC
74086863 AATC-TTAGAGAT
1 AATCTTTAGAGAT
74086875 TTAATTTGTA
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
35 5 0.07
36 43 0.57
38 7 0.09
40 9 0.12
41 12 0.16
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (37 bp):
AATCTTTAGAGATGATACAATCTTAGATATGATATGC
Found at i:74089556 original size:3 final size:3
Alignment explanation
Indices: 74089548--74089595 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
74089538 CTTTCCGTTC
* * *
74089548 TCT TCT TCT TCT TCT TGT TCT TGT TCT TGT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
74089596 GTTTTGTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.00, C:0.27, G:0.06, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:74089882 original size:22 final size:22
Alignment explanation
Indices: 74089851--74089892 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
74089841 GGGTTCCACT
74089851 TTGGTAGTATTCGAGTTGGGGG
1 TTGGTAGTATTCGAGTTGGGGG
* *
74089873 TTGGTTGTATTCGGGTTGGG
1 TTGGTAGTATTCGAGTTGGG
74089893 TAATAATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.10, C:0.05, G:0.45, T:0.40
Consensus pattern (22 bp):
TTGGTAGTATTCGAGTTGGGGG
Found at i:74091029 original size:92 final size:92
Alignment explanation
Indices: 74090903--74091086 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
74090893 CTAAGATGGG
74090903 AAGAGCAAGGGATGGTTTCATGCAATATTAACCAAGCCAAGAAACCTATATGAATCAATTTCAAC
1 AAGAGCAAGGGATGGTTTCATGCAATATTAACCAAGCCAAGAAACCTATATGAATCAATTTCAAC
74090968 AAAAATTACAGATAATGAAGATGATAA
66 AAAAATTACAGATAATGAAGATGATAA
74090995 AAGAGCAAGGGATGGTTTCATGCAATATTAACCAAGCCAAGAAACCTATATGAATCAATTTCAAC
1 AAGAGCAAGGGATGGTTTCATGCAATATTAACCAAGCCAAGAAACCTATATGAATCAATTTCAAC
74091060 AAAAATTACAGATAATGAAGATGATAA
66 AAAAATTACAGATAATGAAGATGATAA
74091087 TTCTTATACA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (92 bp):
AAGAGCAAGGGATGGTTTCATGCAATATTAACCAAGCCAAGAAACCTATATGAATCAATTTCAAC
AAAAATTACAGATAATGAAGATGATAA
Found at i:74091225 original size:20 final size:20
Alignment explanation
Indices: 74091169--74091226 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
74091159 TATTGTAATA
74091169 GATTCTTTGTTGTTTTAAATC
1 GATTCTTTGTT-TTTTAAATC
* * *
74091190 GATTCATTATTTTTTAAATT
1 GATTCTTTGTTTTTTAAATC
*
74091210 GATTCTTTGTTATTTAA
1 GATTCTTTGTTTTTTAA
74091227 CTCAATTCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
20 22 0.71
21 9 0.29
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.59
Consensus pattern (20 bp):
GATTCTTTGTTTTTTAAATC
Found at i:74091511 original size:21 final size:20
Alignment explanation
Indices: 74091478--74091626 Score: 79
Period size: 21 Copynumber: 7.0 Consensus size: 20
74091468 TCTTTACTTC
*
74091478 TTTGAATCAATTGTTTGTTGT
1 TTTGAATCGATT-TTTGTTGT
* *
74091499 TTCGAATCGATTGTTTATTGT
1 TTTGAATCGATT-TTTGTTGT
* *
74091520 TTTAAATCGATTTTT-TTCT
1 TTTGAATCGATTTTTGTTGT
*
74091539 TCTTGAATCGATTTTTGCTT-C
1 T-TTGAATCGATTTTTG-TTGT
* *
74091560 TTTGAATTGATTCATTATTGTTTT
1 TTTGAATCGA-T--TT-TTGTTGT
*
74091584 TTTAAATCGATTGTTTGTT-T
1 TTTGAATCGATT-TTTGTTGT
**
74091604 CTTTGAATTAATTTATTGTTGT
1 -TTTGAATCGATTT-TTGTTGT
74091626 T
1 T
74091627 GATTTAAATA
Statistics
Matches: 101, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
19 4 0.04
20 26 0.26
21 51 0.50
22 4 0.04
23 5 0.05
24 11 0.11
ACGTcount: A:0.19, C:0.08, G:0.14, T:0.58
Consensus pattern (20 bp):
TTTGAATCGATTTTTGTTGT
Found at i:74091559 original size:19 final size:20
Alignment explanation
Indices: 74091474--74091571 Score: 67
Period size: 20 Copynumber: 4.8 Consensus size: 20
74091464 TTATTCTTTA
*
74091474 CTTCTTTGAATCAATTGTTTG
1 CTTCTTTGAATCGATT-TTTG
*
74091495 -TTGTTTCGAATCGATTGTTT-
1 CTTCTTT-GAATCGATT-TTTG
* * * *
74091515 ATTGTTTTAAATCGATTTTTTT
1 CTT-CTTTGAATCGA-TTTTTG
74091537 CTTC-TTGAATCGATTTTTG
1 CTTCTTTGAATCGATTTTTG
*
74091556 CTTCTTTGAATTGATT
1 CTTCTTTGAATCGATT
74091572 CATTATTGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
19 9 0.15
20 23 0.37
21 23 0.37
22 7 0.11
ACGTcount: A:0.18, C:0.11, G:0.14, T:0.56
Consensus pattern (20 bp):
CTTCTTTGAATCGATTTTTG
Found at i:74091564 original size:20 final size:21
Alignment explanation
Indices: 74091474--74091611 Score: 86
Period size: 21 Copynumber: 6.5 Consensus size: 21
74091464 TTATTCTTTA
*
74091474 CTTCTTTGAATCAATTGTTTG
1 CTTCTTTGAATCGATTGTTTG
*
74091495 -TTGTTTCGAATCGATTGTTT-
1 CTTCTTT-GAATCGATTGTTTG
* * * * *
74091515 ATTGTTTTAAATCGATTTTTTT
1 CTT-CTTTGAATCGATTGTTTG
74091537 CTTC-TTGAATCGATT-TTTG
1 CTTCTTTGAATCGATTGTTTG
* *
74091556 CTTCTTTGAATTGATTCATTATTG
1 CTTCTTTGAATCGATT--GT-TTG
* * *
74091580 TTTTTTTAAATCGATTGTTTG
1 CTTCTTTGAATCGATTGTTTG
*
74091601 TTTCTTTGAAT
1 CTTCTTTGAAT
74091612 TAATTTATTG
Statistics
Matches: 91, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
19 7 0.08
20 25 0.27
21 37 0.41
22 6 0.07
23 1 0.01
24 15 0.16
ACGTcount: A:0.19, C:0.10, G:0.14, T:0.57
Consensus pattern (21 bp):
CTTCTTTGAATCGATTGTTTG
Found at i:74091609 original size:45 final size:44
Alignment explanation
Indices: 74091544--74091645 Score: 123
Period size: 45 Copynumber: 2.3 Consensus size: 44
74091534 TTTCTTCTTG
* **
74091544 AATCGATTTTTGCTTCTTTGAATTGATTCATTATTGTTTTTTTA
1 AATCGATTTTTGCTTCTTTGAATTAATTCATTATTGTTGATTTA
* * *
74091588 AATCGATTGTTTGTTTCTTTGAATTAATTTATTGTTGTTGATTTA
1 AATCGATT-TTTGCTTCTTTGAATTAATTCATTATTGTTGATTTA
*
74091633 AATAGATTATTTG
1 AATCGATT-TTTG
74091646 ATGTTTAACT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 8 0.16
45 41 0.84
ACGTcount: A:0.24, C:0.06, G:0.14, T:0.57
Consensus pattern (44 bp):
AATCGATTTTTGCTTCTTTGAATTAATTCATTATTGTTGATTTA
Found at i:74099042 original size:44 final size:41
Alignment explanation
Indices: 74098968--74099086 Score: 123
Period size: 44 Copynumber: 2.8 Consensus size: 41
74098958 CGATATGTGT
* * *
74098968 TTTCATGTAAGACTAGGTCTAGGACGTTGGCATCG-ACTTATGA
1 TTTCATGTAAGAC-ATGTCTGGGACATTGGCATCGTA-TT-TGA
74099011 TTTACATGTAAGATCATGTCTGGGACATTGGCATCGTATTTGA
1 TTT-CATGTAAGA-CATGTCTGGGACATTGGCATCGTATTTGA
** *
74099054 TTTTGTGTAAGACACTGTCTGGGACAGTGGCAT
1 TTTCATGTAAGACA-TGTCTGGGACATTGGCAT
74099087 AGACAGTGGC
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
41 2 0.03
42 24 0.36
43 9 0.14
44 29 0.44
45 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (41 bp):
TTTCATGTAAGACATGTCTGGGACATTGGCATCGTATTTGA
Found at i:74105017 original size:22 final size:20
Alignment explanation
Indices: 74104975--74105019 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 20
74104965 TTATTTAATT
74104975 ATAAGAAAAATAATAAAATA
1 ATAAGAAAAATAATAAAATA
74104995 ATAATGAAAAGATAA-AAAGATA
1 ATAA-GAAAA-ATAATAAA-ATA
74105017 ATA
1 ATA
74105020 TATCAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.18
21 8 0.36
22 10 0.45
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (20 bp):
ATAAGAAAAATAATAAAATA
Found at i:74108196 original size:9 final size:9
Alignment explanation
Indices: 74108184--74108208 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
74108174 TATTTAGGCC
74108184 TTTTAAAAA
1 TTTTAAAAA
74108193 TTTTAAAAA
1 TTTTAAAAA
74108202 TTTTAAA
1 TTTTAAA
74108209 TTAGTAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:74109862 original size:35 final size:35
Alignment explanation
Indices: 74109822--74109893 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
74109812 AATCCTTGAC
74109822 ATAGCTTTTTTGTTATAAGAAAAATTCAAACTATA
1 ATAGCTTTTTTGTTATAAGAAAAATTCAAACTATA
*
74109857 ATAGCTTTTTTGTTATAAGAAAAATTTAAACTATA
1 ATAGCTTTTTTGTTATAAGAAAAATTCAAACTATA
74109892 AT
1 AT
74109894 TTTTTTTACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (35 bp):
ATAGCTTTTTTGTTATAAGAAAAATTCAAACTATA
Found at i:74110852 original size:6 final size:6
Alignment explanation
Indices: 74110841--74110884 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
74110831 CAAATTTTTG
* * * *
74110841 AAAATC AAAATC AAAATC AAATTG AACATT AAAATC AAAATC AA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AA
74110885 GTACAAAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.64, C:0.14, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAATC
Found at i:74110874 original size:24 final size:24
Alignment explanation
Indices: 74110838--74110884 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
74110828 GTCCAAATTT
74110838 TTGAAAATCAAAATCAAAATCAAA
1 TTGAAAATCAAAATCAAAATCAAA
* *
74110862 TTGAACATTAAAATCAAAATCAA
1 TTGAAAATCAAAATCAAAATCAA
74110885 GTACAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.60, C:0.13, G:0.04, T:0.23
Consensus pattern (24 bp):
TTGAAAATCAAAATCAAAATCAAA
Found at i:74111056 original size:147 final size:146
Alignment explanation
Indices: 74110864--74111155 Score: 390
Period size: 146 Copynumber: 2.0 Consensus size: 146
74110854 AAATCAAATT
*
74110864 GAACATTAAAATCAAAATCAAGTACAAAATATTATATTAAATCTAACCATAATACTAACATTTTT
1 GAACATTAAAATCAAAATCAAGTACAAAATACTATATTAAATCTAACCATAATACTAA-ATTTTT
*** *
74110929 GAAAATCTATTTACAACTAATGGGGCATTTGGTTCACCGAAT-AAATGTTACGACCCGTAATGGG
65 GAAAATCTATTTACAACTAATGAAACATTTGGTTCACCGAATGAAATGTTA-GAACCGTAATGGG
74110993 CCGTTTT-AAACTATTTTG
129 -CGTTTTGAAACTATTTTG
** * *
74111011 GAACATTGTAATCAAAATTAAGTACAAAATACTATATTAATTCTAACCATAATACTAAATTTTTG
1 GAACATTAAAATCAAAATCAAGTACAAAATACTATATTAAATCTAACCATAATACTAAATTTTTG
* * * * * * *
74111076 AAAATTTATTTATAGCTAATGAAATATTTGGTTCACCGAATGTAATGTTATAACGGTAATGGGCG
66 AAAATCTATTTACAACTAATGAAACATTTGGTTCACCGAATGAAATGTTAGAACCGTAATGGGCG
*
74111141 TTTTGGAACTATTTT
131 TTTTGAAACTATTTT
74111156 TAAATTTAAA
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
145 6 0.05
146 60 0.48
147 60 0.48
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (146 bp):
GAACATTAAAATCAAAATCAAGTACAAAATACTATATTAAATCTAACCATAATACTAAATTTTTG
AAAATCTATTTACAACTAATGAAACATTTGGTTCACCGAATGAAATGTTAGAACCGTAATGGGCG
TTTTGAAACTATTTTG
Found at i:74112298 original size:21 final size:20
Alignment explanation
Indices: 74112256--74112299 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
74112246 ATTCTAATAA
*
74112256 TTGAAAATAAAAAGAAACAT
1 TTGAAAATAAAAAGAAAAAT
* *
74112276 TTGATAAATAAAGATAAAAAT
1 TTGA-AAATAAAAAGAAAAAT
74112297 TTG
1 TTG
74112300 TTTTTAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.27
Consensus pattern (20 bp):
TTGAAAATAAAAAGAAAAAT
Found at i:74114684 original size:10 final size:10
Alignment explanation
Indices: 74114669--74114700 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
74114659 TAAATACATT
74114669 TAATTAAAGA
1 TAATTAAAGA
74114679 TAATTAAAGA
1 TAATTAAAGA
74114689 TAATTAAA-A
1 TAATTAAAGA
74114698 TAA
1 TAA
74114701 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:74114712 original size:19 final size:18
Alignment explanation
Indices: 74114688--74114731 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
74114678 ATAATTAAAG
74114688 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
74114708 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
74114725 ATAATTA
1 ATAATTA
74114732 TCTTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:74114727 original size:28 final size:27
Alignment explanation
Indices: 74114696--74114760 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
74114686 AGATAATTAA
74114696 AATAAAATCCTAAAATTTAAATAATCCT
1 AATAAAATCCTAAAATTT-AATAATCCT
* * * *
74114724 AATAATTATCTTAATATTTAATTATCCT
1 AATAA-AATCCTAAAATTTAATAATCCT
74114752 AATATAAAT
1 AATA-AAAT
74114761 AAAATGGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (27 bp):
AATAAAATCCTAAAATTTAATAATCCT
Found at i:74114747 original size:16 final size:16
Alignment explanation
Indices: 74114726--74114756 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74114716 ATAATCCTAA
*
74114726 TAATTATCTTAATATT
1 TAATTATCCTAATATT
74114742 TAATTATCCTAATAT
1 TAATTATCCTAATAT
74114757 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATTATCCTAATATT
Found at i:74116631 original size:30 final size:30
Alignment explanation
Indices: 74116595--74116656 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
74116585 AATGAAAAAG
*
74116595 GATTAAATTGTAGAATAAATTGTAAAGTTT
1 GATTAAATTGTAGAATAAATTGTAAAATTT
74116625 GATTAAATTGTAGAATAAATTGTAAAATTT
1 GATTAAATTGTAGAATAAATTGTAAAATTT
74116655 GA
1 GA
74116657 GTAATAGGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (30 bp):
GATTAAATTGTAGAATAAATTGTAAAATTT
Found at i:74118121 original size:18 final size:19
Alignment explanation
Indices: 74118085--74118126 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
74118075 TTGTTCATGC
*
74118085 CTTTCACTTCCAATCTCAA
1 CTTTCAATTCCAATCTCAA
74118104 -TTTCAATTCACAAT-TCAA
1 CTTTCAATTC-CAATCTCAA
74118122 CTTTC
1 CTTTC
74118127 TCATTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (19 bp):
CTTTCAATTCCAATCTCAA
Found at i:74119523 original size:30 final size:28
Alignment explanation
Indices: 74119468--74119529 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
74119458 ATTATTTAAT
74119468 TAATAAATATCTTTTACTTAATAATAAA
1 TAATAAATATCTTTTACTTAATAATAAA
*
74119496 TAATAAATATCTATTTACTTAAATAATAAG
1 TAATAAATATCT-TTTACTT-AATAATAAA
74119526 TAAT
1 TAAT
74119530 TTAAATCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 7 0.23
30 12 0.39
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (28 bp):
TAATAAATATCTTTTACTTAATAATAAA
Found at i:74124822 original size:12 final size:13
Alignment explanation
Indices: 74124805--74124833 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
74124795 ACTGTTACAT
74124805 GGCCTA-CCACAC
1 GGCCTAGCCACAC
74124817 GGCCTAGCCACAC
1 GGCCTAGCCACAC
74124830 GGCC
1 GGCC
74124834 GTGTGACCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.21, C:0.48, G:0.24, T:0.07
Consensus pattern (13 bp):
GGCCTAGCCACAC
Found at i:74133643 original size:5 final size:5
Alignment explanation
Indices: 74133633--74133660 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
74133623 CTGTGTGTTC
74133633 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
74133661 CACAAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:74156911 original size:11 final size:11
Alignment explanation
Indices: 74156895--74156932 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
74156885 TTTATATTTT
74156895 TAAAAAATATA
1 TAAAAAATATA
*
74156906 T-AAAAAT-TT
1 TAAAAAATATA
74156915 TAAAAAATATA
1 TAAAAAATATA
74156926 TAAAAAA
1 TAAAAAA
74156933 AGTTTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.09
10 12 0.52
11 9 0.39
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAAATATA
Found at i:74156917 original size:20 final size:20
Alignment explanation
Indices: 74156892--74156931 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
74156882 AAATTTATAT
74156892 TTTTAAAAAATATATAAAAA
1 TTTTAAAAAATATATAAAAA
74156912 TTTTAAAAAATATATAAAAA
1 TTTTAAAAAATATATAAAAA
74156932 AAGTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
TTTTAAAAAATATATAAAAA
Found at i:74156926 original size:22 final size:21
Alignment explanation
Indices: 74156890--74156941 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
74156880 CAAAATTTAT
* *
74156890 ATTTTTAAAAAATATATAAAA
1 ATTTTAAAAAAATATAAAAAA
74156911 ATTTTAAAAAATATATAAAAAA
1 ATTTTAAAAAA-ATATAAAAAA
*
74156933 AGTTTAAAA
1 ATTTTAAAA
74156942 TTTTAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTTTAAAAAAATATAAAAAA
Found at i:74156926 original size:35 final size:35
Alignment explanation
Indices: 74156858--74156926 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
74156848 TAACAAAAAC
* * **
74156858 TTTAAAATATTTATAAAAATTTCAAAATTTATATT
1 TTTAAAAAATATATAAAAATTTCAAAAAATATATT
*
74156893 TTTAAAAAATATATAAAAATTTTAAAAAATATAT
1 TTTAAAAAATATATAAAAATTTCAAAAAATATAT
74156927 AAAAAAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (35 bp):
TTTAAAAAATATATAAAAATTTCAAAAAATATATT
Found at i:74159817 original size:22 final size:23
Alignment explanation
Indices: 74159775--74159819 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
74159765 ATTTTCAAAA
* *
74159775 GCACTTCTCACTTTAAAAATTAT
1 GCACTTCTAACTTCAAAAATTAT
74159798 GCACTTCTAAC-TCAAAAATTAT
1 GCACTTCTAACTTCAAAAATTAT
74159820 TTGTTTAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (23 bp):
GCACTTCTAACTTCAAAAATTAT
Found at i:74160019 original size:6 final size:6
Alignment explanation
Indices: 74160008--74160032 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
74159998 TTTTATGTAA
74160008 AATTAT AATTAT AATTAT AATTAT A
1 AATTAT AATTAT AATTAT AATTAT A
74160033 CTTTTAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:74160645 original size:48 final size:47
Alignment explanation
Indices: 74160581--74160692 Score: 154
Period size: 48 Copynumber: 2.3 Consensus size: 47
74160571 AGTGATAATT
*
74160581 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCAAATT-TAA
1 TTAAA-TTTCAATACTATTCGATATTTTATTAATTTATGC-AATTATAA
* *
74160629 TTAAATTTACAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTATTCGATATTTTATTAATTTATGCAATTATAA
74160677 TTAAAATTTCAATACT
1 TT-AAATTTCAATACT
74160693 GCTTTATTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
47 7 0.12
48 45 0.78
49 6 0.10
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.50
Consensus pattern (47 bp):
TTAAATTTCAATACTATTCGATATTTTATTAATTTATGCAATTATAA
Found at i:74161695 original size:7 final size:7
Alignment explanation
Indices: 74161682--74161714 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
74161672 TAGTCGTTTC
74161682 GTATTTA
1 GTATTTA
*
74161689 ATATTTA
1 GTATTTA
74161696 GTATTTA
1 GTATTTA
74161703 GTATTTA
1 GTATTTA
74161710 GTATT
1 GTATT
74161715 ATGTATTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:74162331 original size:18 final size:18
Alignment explanation
Indices: 74162308--74162351 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
74162298 ATGCAAGGTG
**
74162308 TGTATCCTAGCCCTTATA
1 TGTATCCTAAACCTTATA
74162326 TGTATCCTAAACCTTATA
1 TGTATCCTAAACCTTATA
*
74162344 TGTTTCCT
1 TGTATCCT
74162352 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (18 bp):
TGTATCCTAAACCTTATA
Found at i:74166056 original size:126 final size:126
Alignment explanation
Indices: 74165830--74166209 Score: 541
Period size: 126 Copynumber: 3.0 Consensus size: 126
74165820 TTATAGCCTC
* * * *
74165830 ATTTTTCTACGAACTATTGTAGCAAAAGAGCGTCCACGTGGGAAC-TTTTTCATAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTTCAAAAATTTTGCTG
* *
74165894 ACAGTGCATCCTGCTTGAA-CTGTTTTCGACAATATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGC-GTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
* *
74165955 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATTCACGTGAGAGCTTTTTTCAAAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTTCAAAAATTTTGCTG
* * * * *
74166020 ACAGTGTATCATACTTGAAGCGTTTTCGACACTATTTGTTTAGAAATATCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
* * * *
74166081 ATTTTTCTACGAACTACTATA-CTAAAAGAACGTCCACGTGTGAGCTTTTTTCAGAAATTTTGCT
1 ATTTTTCTACGAACTACTGTAGC-AAAAGAGCGTCCACGTGAGAGCTTTTTTCAAAAATTTTGCT
* * *
74166145 AACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTCTTCAGAAATGTCTACTCAAAATT
65 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
74166207 ATT
1 ATT
74166210 CTTACAGAAA
Statistics
Matches: 225, Mismatches: 27, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
125 41 0.18
126 183 0.81
127 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTTTTTCAAAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
Found at i:74166770 original size:19 final size:19
Alignment explanation
Indices: 74166748--74166817 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
74166738 ACGATTATGT
*
74166748 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAATTTA
74166767 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAATTTA
*
74166786 ATCAA-T--CACTAATTTA
1 ATCAATTAACCCTAATTTA
74166802 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
74166818 ACCCTAAACT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
16 14 0.31
17 1 0.02
18 1 0.02
19 29 0.64
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.34
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:74166947 original size:22 final size:22
Alignment explanation
Indices: 74166889--74166938 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
74166879 CCTTAAATTT
*
74166889 TAAACCCTAAAAACCATAACCC
1 TAAATCCTAAAAACCATAACCC
*
74166911 TAAATCCTAAAAACCATAACCT
1 TAAATCCTAAAAACCATAACCC
74166933 TAAATC
1 TAAATC
74166939 AATTAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAATCCTAAAAACCATAACCC
Found at i:74170699 original size:47 final size:47
Alignment explanation
Indices: 74170642--74170756 Score: 137
Period size: 45 Copynumber: 2.5 Consensus size: 47
74170632 TATCGATATA
* * *
74170642 TCAGCTCGTAAGAGCTTACTGTTTTTAGCTCATTGGAGCTTACCGAT
1 TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCAATAGAGCTTACCGAT
* * *
74170689 TCAGCTCGTAAGAGCTTA-T-TGTTCAGCTCAATAGAGCTTACTGTT
1 TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCAATAGAGCTTACCGAT
*
74170734 TCAGCTCAATAA-AGCTTACTGTT
1 TCAGCTC-GTAAGAGCTTACTGTT
74170757 CATCAGTTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
45 33 0.58
46 5 0.09
47 19 0.33
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (47 bp):
TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCAATAGAGCTTACCGAT
Found at i:74170741 original size:23 final size:23
Alignment explanation
Indices: 74170652--74170756 Score: 106
Period size: 23 Copynumber: 4.6 Consensus size: 23
74170642 TCAGCTCGTA
* *
74170652 AGAGCTTACTGTTTTTAGCTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
* * * *
74170676 GGAGCTTACCGATTCAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
*
74170698 AAGAGCTTATTG-TTCAGCTCAAT
1 -AGAGCTTACTGTTTCAGCTCAAT
74170721 AGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
74170744 AAAGCTTACTGTT
1 AGAGCTTACTGTT
74170757 CATCAGTTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
22 19 0.28
23 39 0.58
24 9 0.13
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:74178300 original size:23 final size:23
Alignment explanation
Indices: 74178248--74178330 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 23
74178238 TCAGCTCGTA
* * *
74178248 AGAGCTTACTGTTTCAGC-TCAT
1 AGAGCTTACCGATTCAGCTTAAT
*
74178270 TGATGCTTACCGATTCAGCTTAAT
1 AGA-GCTTACCGATTCAGCTTAAT
* * * *
74178294 AGAGCTTACCGTTTTAGCTCAAG
1 AGAGCTTACCGATTCAGCTTAAT
74178317 AGGAGCTTACCGAT
1 A-GAGCTTACCGAT
74178331 CATGGCTCGA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
22 2 0.04
23 30 0.62
24 16 0.33
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (23 bp):
AGAGCTTACCGATTCAGCTTAAT
Found at i:74181420 original size:20 final size:20
Alignment explanation
Indices: 74181395--74181456 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
74181385 AACAACATCG
74181395 AGTAAGCTTCGATTGAGCTT
1 AGTAAGCTTCGATTGAGCTT
*
74181415 AGTAAG-TTC-A-T-AG-GT
1 AGTAAGCTTCGATTGAGCTT
*
74181430 AGAAAAGCTTCGATTGAGCTT
1 AG-TAAGCTTCGATTGAGCTT
74181451 AGTAAG
1 AGTAAG
74181457 TTCATAGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
15 3 0.09
16 5 0.16
17 4 0.12
18 2 0.06
19 4 0.12
20 11 0.34
21 3 0.09
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (20 bp):
AGTAAGCTTCGATTGAGCTT
Found at i:74181445 original size:36 final size:36
Alignment explanation
Indices: 74181398--74181471 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
74181388 AACATCGAGT
74181398 AAGCTTCGATTGAGCTTAGTAAGTTCATAGGTAGAA
1 AAGCTTCGATTGAGCTTAGTAAGTTCATAGGTAGAA
74181434 AAGCTTCGATTGAGCTTAGTAAGTTCATAGGTAGAA
1 AAGCTTCGATTGAGCTTAGTAAGTTCATAGGTAGAA
74181470 AA
1 AA
74181472 ATAATATAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (36 bp):
AAGCTTCGATTGAGCTTAGTAAGTTCATAGGTAGAA
Found at i:74184698 original size:30 final size:30
Alignment explanation
Indices: 74184664--74184724 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
74184654 TTCCCGAGCC
*
74184664 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
* * *
74184694 TAGGGGCAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
74184724 T
1 T
74184725 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGAAAAAGTT
Found at i:74191728 original size:26 final size:26
Alignment explanation
Indices: 74191697--74191804 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
74191687 TGAAATGCCC
* *
74191697 ATCATGGAACATGTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
74191723 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
74191749 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
74191775 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74191801 ATCA
1 ATCA
74191805 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74193624 original size:19 final size:19
Alignment explanation
Indices: 74193602--74193726 Score: 79
Period size: 19 Copynumber: 6.5 Consensus size: 19
74193592 GATGCATCTC
74193602 GTGTGCTAGGATGCACTTT
1 GTGTGCTAGGATGCACTTT
* ** **
74193621 GTGTGCCAATATGTGCTTT
1 GTGTGCTAGGATGCACTTT
* *
74193640 GTGCGCTAGGAGTGCATTTT
1 GTGTGCTAGGA-TGCACTTT
* *
74193660 GTGTGATAGGATGCACTTC
1 GTGTGCTAGGATGCACTTT
* * * ** *
74193679 GTGTTCCAGTATGTGCTTC
1 GTGTGCTAGGATGCACTTT
*
74193698 GTGTGCTAGGAATGCATTTT
1 GTGTGCTAGG-ATGCACTTT
*
74193718 GTGTTCTAG
1 GTGTGCTAG
74193727 TATGTATTAT
Statistics
Matches: 74, Mismatches: 30, Indels: 3
0.69 0.28 0.03
Matches are distributed among these distances:
19 47 0.64
20 27 0.36
ACGTcount: A:0.16, C:0.15, G:0.30, T:0.38
Consensus pattern (19 bp):
GTGTGCTAGGATGCACTTT
Found at i:74193670 original size:58 final size:58
Alignment explanation
Indices: 74193593--74193721 Score: 177
Period size: 58 Copynumber: 2.2 Consensus size: 58
74193583 GTTGGCCAGG
* * * * *
74193593 ATGCATCTCGTGTGCTAGGATGCACTTTGTGTGCCAATATGTGCTTTGTGCGCTAGGA
1 ATGCATTTTGTGTGATAGGATGCACTTCGTGTGCCAATATGTGCTTCGTGCGCTAGGA
* * * *
74193651 GTGCATTTTGTGTGATAGGATGCACTTCGTGTTCCAGTATGTGCTTCGTGTGCTAGGA
1 ATGCATTTTGTGTGATAGGATGCACTTCGTGTGCCAATATGTGCTTCGTGCGCTAGGA
74193709 ATGCATTTTGTGT
1 ATGCATTTTGTGT
74193722 TCTAGTATGT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.16, C:0.16, G:0.29, T:0.38
Consensus pattern (58 bp):
ATGCATTTTGTGTGATAGGATGCACTTCGTGTGCCAATATGTGCTTCGTGCGCTAGGA
Found at i:74200423 original size:29 final size:30
Alignment explanation
Indices: 74200391--74200447 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
74200381 ACCATGAATA
* *
74200391 TAATTAAACTAATAA-ATTCAACCAAAAAC
1 TAATGAAACTAATAAGACTCAACCAAAAAC
*
74200420 TAATGACACTAATAAGACTCAACCAAAA
1 TAATGAAACTAATAAGACTCAACCAAAA
74200448 GCAATCAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.56, C:0.19, G:0.04, T:0.21
Consensus pattern (30 bp):
TAATGAAACTAATAAGACTCAACCAAAAAC
Found at i:74201264 original size:55 final size:55
Alignment explanation
Indices: 74201162--74201282 Score: 143
Period size: 55 Copynumber: 2.2 Consensus size: 55
74201152 GAGCAAGCCT
* * * *
74201162 GTGTTATTTTGATAGTTTTGACCACGGATGGTGGGTACAGGCATGTCGCACTCCC
1 GTGTTATTTTGACAGTTTCGACCACGGATGGTGGGCACAGGCATGTCGCACGCCC
* * * * * * *
74201217 GTGTTGTTTTGACAGTTTCGACCATGGGTGGTGGGCACGGGCGTGTCGTACGCTC
1 GTGTTATTTTGACAGTTTCGACCACGGATGGTGGGCACAGGCATGTCGCACGCCC
74201272 GTGTTATTTTG
1 GTGTTATTTTG
74201283 GCAGGATTGC
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.14, C:0.18, G:0.33, T:0.35
Consensus pattern (55 bp):
GTGTTATTTTGACAGTTTCGACCACGGATGGTGGGCACAGGCATGTCGCACGCCC
Found at i:74203150 original size:18 final size:18
Alignment explanation
Indices: 74203129--74203410 Score: 106
Period size: 18 Copynumber: 15.2 Consensus size: 18
74203119 AACAATTATC
* *
74203129 TATTCAGTAACAGTCAGT
1 TATTCAGTAATAATCAGT
*
74203147 TATTC-GTTAATAATCAAT
1 TATTCAG-TAATAATCAGT
* *
74203165 TATTCAATAATAACCAGT
1 TATTCAGTAATAATCAGT
*
74203183 TATTCAGTATCGATCAATTGATCGGT
1 TATTCAGTA---AT--A---ATCAGT
* * * * *
74203209 TATCCAGTAACAGTTAAT
1 TATTCAGTAATAATCAGT
*
74203227 TATTCAGTAA-AATCAGA
1 TATTCAGTAATAATCAGT
* *
74203244 TATTCAGTAACAATTAAGT
1 TATTCAGTAATAA-TCAGT
* *
74203263 TAATT-AGTAACAGTCA-T
1 T-ATTCAGTAATAATCAGT
* *
74203280 TCATTCAGTGACAATCAGT
1 T-ATTCAGTAATAATCAGT
* * *
74203299 TATTTAGTAATGATCATT
1 TATTCAGTAATAATCAGT
*
74203317 TATTCAGTAATATTCAGT
1 TATTCAGTAATAATCAGT
* *
74203335 TATTCAGTAACAGTCTA-T
1 TATTCAGTAATAATC-AGT
* * * *
74203353 TATCCAGTAACAGTCAAT
1 TATTCAGTAATAATCAGT
* * * *
74203371 TATTCGGTAACAGTCATT
1 TATTCAGTAATAATCAGT
* *
74203389 TATTCAGAAATAGTCAGT
1 TATTCAGTAATAATCAGT
74203407 TATT
1 TATT
74203411 TTATACATTT
Statistics
Matches: 201, Mismatches: 46, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
17 20 0.10
18 147 0.73
19 14 0.07
20 3 0.01
21 3 0.01
23 2 0.01
26 12 0.06
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TATTCAGTAATAATCAGT
Found at i:74203300 original size:36 final size:36
Alignment explanation
Indices: 74203208--74203410 Score: 153
Period size: 36 Copynumber: 5.6 Consensus size: 36
74203198 AATTGATCGG
* * * * * *
74203208 TTATCCAGTAACAGTTAATTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAT
* *
74203243 ATATTCAGTAACAATTAAGTTAATT-AGTAACAGTCAT
1 TTATTCAGTAACAA-TCAGTT-ATTCAGTAACAGTCAT
* * * *
74203280 TCATTCAGTGACAATCAGTTATTTAGTAA-TGATCAT
1 TTATTCAGTAACAATCAGTTATTCAGTAACAG-TCAT
* *
74203316 TTATTCAGTAATATTCAGTTATTCAGTAACAGTC-T
1 TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAT
* * * *
74203351 ATTATCCAGTAACAGTCAATTATTCGGTAACAGTCAT
1 -TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAT
* * *
74203388 TTATTCAGAAATAGTCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
74203411 TTATACATTT
Statistics
Matches: 133, Mismatches: 27, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
35 16 0.12
36 97 0.73
37 20 0.15
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAGTCAT
Found at i:74203326 original size:54 final size:53
Alignment explanation
Indices: 74203208--74203395 Score: 125
Period size: 54 Copynumber: 3.5 Consensus size: 53
74203198 AATTGATCGG
* * * * * *
74203208 TTATCCAGTAACAGTTAATTATTCAGTAA-AATC-AGATATTCAGTAACAATTAA
1 TTATTCAGTAACAG-TCATTATTCAGTAACAATCTA-TTATCCAGTAACAGTCAA
* ** * *
74203261 GTTAATT-AGTAACAGTCATTCATTCAGTGACAATC-AGTTATTTAGTAA-TGATCAT
1 -TT-ATTCAGTAACAGTCATT-ATTCAGTAACAATCTA-TTATCCAGTAACAG-TCAA
* * *
74203316 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTATTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCA-TTATTCAGTAACAATCTATTATCCAGTAACAGTCAA
*
74203370 TTATTCGGTAACAGTCATTTATTCAG
1 TTATTCAGTAACAGTCA-TTATTCAG
74203396 AAATAGTCAG
Statistics
Matches: 105, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
53 7 0.07
54 75 0.71
55 23 0.22
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (53 bp):
TTATTCAGTAACAGTCATTATTCAGTAACAATCTATTATCCAGTAACAGTCAA
Found at i:74203344 original size:72 final size:71
Alignment explanation
Indices: 74203208--74203410 Score: 196
Period size: 72 Copynumber: 2.8 Consensus size: 71
74203198 AATTGATCGG
* * * ** * *
74203208 TTATCCAGTAACAGTTAATTATTCAGTAA-AATCAGATATTCAGTAACAATTAAGTTAATTAGTA
1 TTATCCAGTAACAATCAATTATTCAGTAACAGTCATTTATTCAGTAA-TATTCAGTT-ATTAGTA
74203272 ACAGTC-A
64 ACAGTCTA
* * * * *
74203279 TTCATTCAGTGACAATCAGTTATTTAGTAA-TGATCATTTATTCAGTAATATTCAGTTATTCAGT
1 TT-ATCCAGTAACAATCAATTATTCAGTAACAG-TCATTTATTCAGTAATATTCAGTTATT-AGT
74203343 AACAGTCTA
63 AACAGTCTA
* * * *
74203352 TTATCCAGTAACAGTCAATTATTCGGTAACAGTCATTTATTCAGAAATAGTCAGTTATT
1 TTATCCAGTAACAATCAATTATTCAGTAACAGTCATTTATTCAGTAATATTCAGTTATT
74203411 TTATACATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
71 5 0.05
72 84 0.79
73 17 0.16
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (71 bp):
TTATCCAGTAACAATCAATTATTCAGTAACAGTCATTTATTCAGTAATATTCAGTTATTAGTAAC
AGTCTA
Found at i:74203626 original size:6 final size:6
Alignment explanation
Indices: 74203611--74203644 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
74203601 TGCTAAATCG
*
74203611 GTAACA GTAACG GTAACA GTAACCA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAA-CA GTAACA GTA
74203645 TTCGACACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:74203626 original size:12 final size:13
Alignment explanation
Indices: 74203609--74203644 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
74203599 AGTGCTAAAT
74203609 CGGTAACAGTAA-
1 CGGTAACAGTAAC
74203621 CGGTAACAGTAAC
1 CGGTAACAGTAAC
*
74203634 CAGTAACAGTA
1 CGGTAACAGTA
74203645 TTCGACACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (13 bp):
CGGTAACAGTAAC
Found at i:74203789 original size:16 final size:16
Alignment explanation
Indices: 74203760--74203793 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
74203750 TAATTCACTT
74203760 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
74203776 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
74203792 TT
1 TT
74203794 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:74205397 original size:28 final size:28
Alignment explanation
Indices: 74205357--74205419 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
74205347 GTCATTATCA
74205357 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
74205385 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
74205413 ACCCCAT
1 ACCCCAT
74205420 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:74210823 original size:28 final size:28
Alignment explanation
Indices: 74210783--74210845 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
74210773 GTCATTATCA
74210783 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
74210811 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
74210839 ACCCCAT
1 ACCCCAT
74210846 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:74211545 original size:24 final size:23
Alignment explanation
Indices: 74211499--74211562 Score: 60
Period size: 24 Copynumber: 2.8 Consensus size: 23
74211489 AATAAGTAAA
* * *
74211499 TACATATATGTATTACAAATGTAT
1 TACAT-TATTTATCACACATGTAT
74211523 GTACATTATTTATCACACATGTAT
1 -TACATTATTTATCACACATGTAT
*
74211547 T-TATT-TTTATCACACA
1 TACATTATTTATCACACA
74211563 CTTGGCACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 11 0.31
22 3 0.09
23 1 0.03
24 15 0.43
25 5 0.14
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (23 bp):
TACATTATTTATCACACATGTAT
Found at i:74218397 original size:72 final size:72
Alignment explanation
Indices: 74218260--74218397 Score: 179
Period size: 72 Copynumber: 1.9 Consensus size: 72
74218250 GAATTTTATG
* * * * * **
74218260 ATCGATGGCTTGAGATCTAATATATGTTGCGGATTCTCTAATGCTTGTGTGAGCAACACTGAATA
1 ATCGATGGCTAGAGATCTAACACATGTTGCGGATTCTCTAAAGCTTGTATGAGCAACACCAAATA
74218325 ATTCTTT
66 ATTCTTT
* *
74218332 ATCGATGGCTAGAGAT-TCAACACATGTTGCTGATTCTCTAAAGTTTGTATGAGCAACACCAAAT
1 ATCGATGGCTAGAGATCT-AACACATGTTGCGGATTCTCTAAAGCTTGTATGAGCAACACCAAAT
74218396 AA
65 AA
74218398 AGCTTATATA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 1 0.02
72 55 0.98
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
ATCGATGGCTAGAGATCTAACACATGTTGCGGATTCTCTAAAGCTTGTATGAGCAACACCAAATA
ATTCTTT
Found at i:74219106 original size:38 final size:38
Alignment explanation
Indices: 74219064--74219142 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
74219054 ATGCTTTGGA
74219064 GAATTCTTAGATATGAAAGTATTGATAGTTTCAAATGG
1 GAATTCTTAGATATGAAAGTATTGATAGTTTCAAATGG
74219102 GAATTCTTAGATATGAAAGTATTGATAGTTTCAAATGG
1 GAATTCTTAGATATGAAAGTATTGATAGTTTCAAATGG
74219140 GAA
1 GAA
74219143 GGTATGGATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (38 bp):
GAATTCTTAGATATGAAAGTATTGATAGTTTCAAATGG
Found at i:74220308 original size:16 final size:17
Alignment explanation
Indices: 74220278--74220313 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
74220268 TTAGAGTTGG
*
74220278 ATTGAGAAAATTATTTA
1 ATTGAGAAAAATATTTA
74220295 ATTGA-AAAAATATTTA
1 ATTGAGAAAAATATTTA
74220311 ATT
1 ATT
74220314 TAAATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (17 bp):
ATTGAGAAAAATATTTA
Found at i:74220337 original size:14 final size:15
Alignment explanation
Indices: 74220289--74220338 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
74220279 TTGAGAAAAT
*
74220289 TATTTAATTGAAAAAA
1 TATTTAATT-AAATAA
74220305 TATTTAATTTAAAT-A
1 TATTTAA-TTAAATAA
74220320 -ATTTAA-TAAATAA
1 TATTTAATTAAATAA
74220333 TATTTA
1 TATTTA
74220339 TTTTGGGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
12 5 0.17
13 1 0.03
14 11 0.37
15 1 0.03
16 10 0.33
17 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
TATTTAATTAAATAA
Found at i:74226107 original size:50 final size:50
Alignment explanation
Indices: 74225987--74226231 Score: 291
Period size: 50 Copynumber: 4.9 Consensus size: 50
74225977 TAGCCGAAGC
* * * * * *
74225987 TATCTGGTACGCATAGTAGCTTGGACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* *
74226036 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * * * * *
74226086 CATTTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
* * *
74226137 TATCAGGTAGCA--TAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTA-CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
74226185 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
74226232 CACAATAGCT
Statistics
Matches: 163, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
47 2 0.01
48 9 0.06
49 72 0.44
50 73 0.45
51 5 0.03
52 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
Found at i:74226122 original size:26 final size:26
Alignment explanation
Indices: 74226043--74226123 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
74226033 AATTATCCGG
*
74226043 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
*
74226069 TACAC--ACGT-GACCTA-ACCATTTG-A-
1 TACACGTA-GTAG-CCTACA-C-TTAGTAC
74226093 TACACGTAGTAGCCTACACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
74226119 TACAC
1 TACAC
74226124 ACGTGATCGA
Statistics
Matches: 42, Mismatches: 3, Indels: 20
0.65 0.05 0.31
Matches are distributed among these distances:
24 11 0.26
25 15 0.36
26 16 0.38
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
TACACGTAGTAGCCTACACTTAGTAC
Found at i:74226196 original size:99 final size:98
Alignment explanation
Indices: 74225986--74226230 Score: 305
Period size: 99 Copynumber: 2.5 Consensus size: 98
74225976 GTAGCCGAAG
* * * * * * *
74225986 CTATCTGGTACGCATAGTAGCTTGGACTTAGTACTACACATGCGACCAATTATCCGGTACACGTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACAC-TA
*
74226051 GTAGCCTGCACTTAGTACTACACACGTGACCTAA
65 GTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * *
74226085 CCATTTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTAGCA-
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTA-CAC
*
74226149 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
63 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
*
74226184 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
74226231 TCACAATAGC
Statistics
Matches: 123, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
98 1 0.01
99 77 0.63
100 34 0.28
101 9 0.07
102 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (98 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACTAG
TAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:74226913 original size:30 final size:30
Alignment explanation
Indices: 74226879--74226938 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
74226869 CTTTAATACG
74226879 AACTTTTGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTTGCAAAATTACAC-TTTTGCCCCTA
* *
74226909 AACTTTTGCATAATTACACTTTTGTCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
74226939 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:74235281 original size:12 final size:12
Alignment explanation
Indices: 74235261--74235294 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
74235251 CGGCTGTGTA
74235261 CTACCACACGGC
1 CTACCACACGGC
* *
74235273 CTCCCACACGGG
1 CTACCACACGGC
74235285 CTACCACACG
1 CTACCACACG
74235295 CCTGTGTGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.50, G:0.18, T:0.09
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:74236659 original size:14 final size:15
Alignment explanation
Indices: 74236640--74236672 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
74236630 GTTTAATTCC
*
74236640 TTTTC-AATTTGATT
1 TTTTCAAATTTAATT
74236654 TTTTCAAATTTAATT
1 TTTTCAAATTTAATT
74236669 TTTT
1 TTTT
74236673 TATCAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTCAAATTTAATT
Found at i:74236805 original size:22 final size:21
Alignment explanation
Indices: 74236768--74236814 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
74236758 AAGTTTCAAT
*
74236768 TAAATAAATTATTAAAAATAA
1 TAAATAAAATATTAAAAATAA
*
74236789 TAAATAAAAATATTAAAAATTA
1 TAAAT-AAAATATTAAAAATAA
74236811 TAAA
1 TAAA
74236815 ACTCGATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
TAAATAAAATATTAAAAATAA
Found at i:74243388 original size:18 final size:18
Alignment explanation
Indices: 74243365--74243404 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
74243355 AATTTGAAAC
74243365 TTTTCTACAAAGGTTTAA
1 TTTTCTACAAAGGTTTAA
* *
74243383 TTTTCTACTATGGTTTAA
1 TTTTCTACAAAGGTTTAA
74243401 TTTT
1 TTTT
74243405 ATAAATAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (18 bp):
TTTTCTACAAAGGTTTAA
Found at i:74289557 original size:25 final size:26
Alignment explanation
Indices: 74289523--74289571 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
74289513 AAAAATATTT
74289523 TTTTAAAAAA-AAT-TAATTAAATATA
1 TTTTAAAAAATAATATAA-TAAATATA
74289548 TTTTAAAAAATAATATAATAAATA
1 TTTTAAAAAATAATATAATAAATA
74289572 CTAATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.45
26 9 0.41
27 3 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
TTTTAAAAAATAATATAATAAATATA
Found at i:74293376 original size:103 final size:103
Alignment explanation
Indices: 74293250--74293451 Score: 386
Period size: 103 Copynumber: 2.0 Consensus size: 103
74293240 TTTACATTGA
74293250 CTTGACGCAATTGCCAACCATTGGATACAACAATAGATAAGATGGTTCAGATAGTAACAGGTTTG
1 CTTGACGCAATTGCCAACCATTGGATACAACAATAGATAAGATGGTTCAGATAGTAACAGGTTTG
74293315 ATCACTGGGTTAAATGTTTCGTTAAAGTCACACCTCAG
66 ATCACTGGGTTAAATGTTTCGTTAAAGTCACACCTCAG
* *
74293353 CTTGACGCAATTGCCAACCATTGGATACAGCAATAGATAAGATGGTTCAGATAGTAGCAGGTTTG
1 CTTGACGCAATTGCCAACCATTGGATACAACAATAGATAAGATGGTTCAGATAGTAACAGGTTTG
74293418 ATCACTGGGTTAAATGTTTCGTTAAAGTCACACC
66 ATCACTGGGTTAAATGTTTCGTTAAAGTCACACC
74293452 CAGGTACCTG
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 97 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (103 bp):
CTTGACGCAATTGCCAACCATTGGATACAACAATAGATAAGATGGTTCAGATAGTAACAGGTTTG
ATCACTGGGTTAAATGTTTCGTTAAAGTCACACCTCAG
Found at i:74295766 original size:24 final size:22
Alignment explanation
Indices: 74295724--74295790 Score: 55
Period size: 24 Copynumber: 2.9 Consensus size: 22
74295714 CATTTCACGT
* *
74295724 CCAAAATCGCGCCCAAAATTGTGC
1 CCAAAATCACACCC-AAATTGT-C
*
74295748 CCAAAA-CTACGACCCAAATCAGTC
1 CCAAAATC-AC-ACCCAAAT-TGTC
74295772 CCAAAATCACACCCAAATT
1 CCAAAATCACACCCAAATT
74295791 ATGGTCTGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
23 9 0.26
24 20 0.57
25 6 0.17
ACGTcount: A:0.40, C:0.36, G:0.09, T:0.15
Consensus pattern (22 bp):
CCAAAATCACACCCAAATTGTC
Found at i:74297124 original size:19 final size:21
Alignment explanation
Indices: 74297083--74297130 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
74297073 TTAAAATTTT
74297083 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
74297104 AA-TAAAAAT-TTATAATCAA
1 AACTAAAAATATTAAAATAAA
74297123 AACTAAAA
1 AACTAAAA
74297131 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:74303346 original size:40 final size:41
Alignment explanation
Indices: 74303301--74303426 Score: 148
Period size: 41 Copynumber: 3.1 Consensus size: 41
74303291 CGATGTAAAG
* * *
74303301 TTTTTTGCGGCATTTTTA-TAAAAACGCCACTGTATCTCAA
1 TTTTTTGTGGCGTTTTTACTAAAAACGCCACTATATCTCAA
* * *
74303341 TTTTTTGTGGCGTTTTTACCAAAAACACCACTATAGCTCAA
1 TTTTTTGTGGCGTTTTTACTAAAAACGCCACTATATCTCAA
* * *
74303382 CTTTTTGTGGCGTTTTCAGTAAAAACGCCACTAT-TGCTCAA
1 TTTTTTGTGGCGTTTTTACTAAAAACGCCACTATAT-CTCAA
74303423 TTTT
1 TTTT
74303427 ATTTTTTTTC
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 16 0.23
41 55 0.77
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (41 bp):
TTTTTTGTGGCGTTTTTACTAAAAACGCCACTATATCTCAA
Found at i:74303588 original size:8 final size:7
Alignment explanation
Indices: 74303577--74303678 Score: 132
Period size: 8 Copynumber: 13.6 Consensus size: 7
74303567 AATATTAAAA
74303577 TTTTAAGT
1 TTTTAA-T
74303585 TTTTAAGT
1 TTTTAA-T
74303593 TTTTAAGT
1 TTTTAA-T
74303601 TTTTAAGT
1 TTTTAA-T
74303609 TTTTAAGT
1 TTTTAA-T
74303617 TTTTAAT
1 TTTTAAT
74303624 TTTTAAT
1 TTTTAAT
74303631 TTTTAATT
1 TTTTAA-T
74303639 TTTTAATT
1 TTTTAA-T
74303647 TTTTAAT
1 TTTTAAT
74303654 TTTTAAT
1 TTTTAAT
74303661 TTTTAAT
1 TTTTAAT
*
74303668 TTTCAAT
1 TTTTAAT
74303675 TTTT
1 TTTT
74303679 TTTGAAGATT
Statistics
Matches: 91, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
7 38 0.42
8 53 0.58
ACGTcount: A:0.25, C:0.01, G:0.05, T:0.69
Consensus pattern (7 bp):
TTTTAAT
Found at i:74303680 original size:30 final size:30
Alignment explanation
Indices: 74303577--74303679 Score: 145
Period size: 30 Copynumber: 3.4 Consensus size: 30
74303567 AATATTAAAA
*
74303577 TTTTAAGTTTTTAAGTTTTTAAGTTTTTAAGT
1 TTTTAATTTTTTAA-TTTTTAA-TTTTTAAGT
* *
74303609 TTTTAAGTTTTTAATTTTTAATTTTTAATT
1 TTTTAATTTTTTAATTTTTAATTTTTAAGT
74303639 TTTTAATTTTTTAATTTTTAATTTTTAA-T
1 TTTTAATTTTTTAATTTTTAATTTTTAAGT
*
74303668 TTTCAATTTTTT
1 TTTTAATTTTTT
74303680 TTGAAGATTT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
29 12 0.18
30 35 0.51
31 7 0.10
32 14 0.21
ACGTcount: A:0.25, C:0.01, G:0.05, T:0.69
Consensus pattern (30 bp):
TTTTAATTTTTTAATTTTTAATTTTTAAGT
Found at i:74304581 original size:20 final size:20
Alignment explanation
Indices: 74304558--74304601 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
74304548 TTATATTTCA
74304558 TTTTTATTTA-TTATC-AAT
1 TTTTTATTTATTTATCAAAT
74304576 GTTTTTATTTATTTATCAAAT
1 -TTTTTATTTATTTATCAAAT
74304597 TTTTT
1 TTTTT
74304602 TAAATCTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 10 0.43
21 3 0.13
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTATTTATTTATCAAAT
Found at i:74304698 original size:6 final size:7
Alignment explanation
Indices: 74304670--74304698 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
74304660 CATTAATCTA
74304670 AACCCTT
1 AACCCTT
74304677 AACCCTT
1 AACCCTT
74304684 AACCCTT
1 AACCCTT
74304691 AA-CCTT
1 AACCCTT
74304697 AA
1 AA
74304699 GTCATAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.34, C:0.38, G:0.00, T:0.28
Consensus pattern (7 bp):
AACCCTT
Found at i:74305285 original size:54 final size:55
Alignment explanation
Indices: 74305204--74305332 Score: 154
Period size: 56 Copynumber: 2.3 Consensus size: 55
74305194 TATGATGTTT
* *
74305204 TTTAGGGTTTAGGGGTTTAAGGG-T-TATAGATTAGTGTTTAAGGTTTTTTTGGG
1 TTTAGGGTTTAGGGGTTTAAGGGTTATATAGACTAGTGTTTAAGATTTTTTTGGG
* * *
74305257 TTTAGGGGTTTAGGGTTTTAGGGGTTATATAGACTAGTGTTTATGATTTTTTTGGGGG
1 TTTA-GGGTTTAGGGGTTTAAGGGTTATATAGACTAGTGTTTAAGATTTTTTT--GGG
*
74305315 TTTAAGGTTTTAGGGGTT
1 TTT-AGGGTTTAGGGGTT
74305333 ATATGACTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
53 4 0.06
54 17 0.27
55 1 0.02
56 23 0.37
58 17 0.27
59 1 0.02
ACGTcount: A:0.18, C:0.01, G:0.34, T:0.47
Consensus pattern (55 bp):
TTTAGGGTTTAGGGGTTTAAGGGTTATATAGACTAGTGTTTAAGATTTTTTTGGG
Found at i:74305413 original size:41 final size:39
Alignment explanation
Indices: 74305340--74305450 Score: 159
Period size: 40 Copynumber: 2.8 Consensus size: 39
74305330 GTTATATGAC
74305340 TTTTAGCGGCGCTTTGCAAAAACGCCGCTATTGCTATGTT
1 TTTTAGCGGCGCTTTGCAAAAACGCCGCTATTGCTATG-T
*
74305380 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGCTTTG-CAAAAACGCCGCTATTGCTATGT
* **
74305420 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTA
1 TTTTAGCGGCG-CTTTGCAAAAACGCCGCTA
74305451 ATGTAAAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
40 40 0.62
41 25 0.38
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (39 bp):
TTTTAGCGGCGCTTTGCAAAAACGCCGCTATTGCTATGT
Found at i:74316609 original size:11 final size:11
Alignment explanation
Indices: 74316593--74316622 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
74316583 AATTTGTGAA
74316593 AAAAATAAAAT
1 AAAAATAAAAT
74316604 AAAAATAAAAT
1 AAAAATAAAAT
74316615 -AAAATAAA
1 AAAAATAAA
74316623 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:74317100 original size:23 final size:22
Alignment explanation
Indices: 74317053--74317101 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
74317043 TTCGTCTATT
* *
74317053 TTTTTCTTTCAATAATTGCTTA
1 TTTTTCTTTCAATAATTGATCA
74317075 TTTTTCTTTCAA-ATATTGGATCA
1 TTTTTCTTTCAATA-ATT-GATCA
74317098 TTTT
1 TTTT
74317102 ACTTACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.04
22 15 0.65
23 7 0.30
ACGTcount: A:0.22, C:0.12, G:0.06, T:0.59
Consensus pattern (22 bp):
TTTTTCTTTCAATAATTGATCA
Found at i:74318229 original size:14 final size:14
Alignment explanation
Indices: 74318210--74318237 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74318200 ATACATGGGA
74318210 ATGAATATTCAAAT
1 ATGAATATTCAAAT
74318224 ATGAATATTCAAAT
1 ATGAATATTCAAAT
74318238 CTTATAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
ATGAATATTCAAAT
Found at i:74320458 original size:17 final size:17
Alignment explanation
Indices: 74320436--74320469 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74320426 TTATTAATCC
74320436 AGTGTACTTGATGAAGA
1 AGTGTACTTGATGAAGA
74320453 AGTGTACTTGATGAAGA
1 AGTGTACTTGATGAAGA
74320470 GCCAAATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (17 bp):
AGTGTACTTGATGAAGA
Done.