Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 229 of 253
Found at i:74826362 original size:40 final size:41
Alignment explanation
Indices: 74826318--74826427 Score: 113
Period size: 37 Copynumber: 2.8 Consensus size: 41
74826308 CGGATAATTT
* **
74826318 GAAGTAATAAATTGACACCCAGTGTCTCATTGGCTA-AACC
1 GAAGTAATAAATTGACACCCAGTGTCTCATCGAATATAACC
* * *
74826358 GAAG---TAAATTGGCACCCA-TGCCTCATCGAATATATCC
1 GAAGTAATAAATTGACACCCAGTGTCTCATCGAATATAACC
* *
74826395 GAAGTAATAATTTGACACCCAGTGTCTTATCGA
1 GAAGTAATAAATTGACACCCAGTGTCTCATCGA
74826428 CTCAAAGTCG
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
36 10 0.18
37 20 0.36
40 16 0.29
41 9 0.16
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (41 bp):
GAAGTAATAAATTGACACCCAGTGTCTCATCGAATATAACC
Found at i:74828014 original size:26 final size:24
Alignment explanation
Indices: 74827985--74828033 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
74827975 TAAATAAAAA
*
74827985 ATTTAAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
74828011 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
74828034 TTAAAACAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 3 0.14
26 13 0.59
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:74828058 original size:19 final size:20
Alignment explanation
Indices: 74828015--74828058 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
74828005 AAATACATTT
*
74828015 AAAAACATAAAAACAAATAT
1 AAAAACATAAAAACAAATAA
* *
74828035 TAAAACA-AGAAACAAATAA
1 AAAAACATAAAAACAAATAA
74828054 AAAAA
1 AAAAA
74828059 TGAGACTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.77, C:0.09, G:0.02, T:0.11
Consensus pattern (20 bp):
AAAAACATAAAAACAAATAA
Found at i:74828481 original size:54 final size:54
Alignment explanation
Indices: 74828421--74828541 Score: 179
Period size: 54 Copynumber: 2.2 Consensus size: 54
74828411 TTTATATTGC
* **
74828421 ATGCATGACATTTAATTTGAATAGAGGATATTGATCTATAAATATTAATTAATT
1 ATGCATGAAATTTAATTTGAATAGAGGATATTGAAATATAAATATTAATTAATT
* * **
74828475 ATGCATGAGATTTAATTTGAATATAGGATATTGAAATATGGATATTAATTAATT
1 ATGCATGAAATTTAATTTGAATAGAGGATATTGAAATATAAATATTAATTAATT
74828529 ATGCATGAAATTT
1 ATGCATGAAATTT
74828542 TGGTCTTTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.40
Consensus pattern (54 bp):
ATGCATGAAATTTAATTTGAATAGAGGATATTGAAATATAAATATTAATTAATT
Found at i:74834326 original size:19 final size:20
Alignment explanation
Indices: 74834302--74834341 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
74834292 AGGGGGAAAG
* *
74834302 TGGGAGAGAGTAAAAA-TTT
1 TGGGAGAAAATAAAAAGTTT
74834321 TGGGAGAAAATAAAAAGTTT
1 TGGGAGAAAATAAAAAGTTT
74834341 T
1 T
74834342 AAGGGTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (20 bp):
TGGGAGAAAATAAAAAGTTT
Found at i:74834501 original size:29 final size:30
Alignment explanation
Indices: 74834444--74834501 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
74834434 CGGAAGGGAA
** * *
74834444 GTAAAAGTTTTGGGGGGAAAGTGAGAAGGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
74834474 GTAAAAGTTTT-GAAGGAAAGTAAAAAGG
1 GTAAAAGTTTTGGAAGGAAAGTAAAAAGG
74834502 TTTGAGAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.21
Consensus pattern (30 bp):
GTAAAAGTTTTGGAAGGAAAGTAAAAAGGG
Found at i:74834560 original size:9 final size:9
Alignment explanation
Indices: 74834542--74834578 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
74834532 TATAGTTTGA
*
74834542 TATTCAAAT
1 TATTCGAAT
74834551 TATTCGAAT
1 TATTCGAAT
*
74834560 TATTCGAGT
1 TATTCGAAT
74834569 TATTCGAAT
1 TATTCGAAT
74834578 T
1 T
74834579 CAAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:74835869 original size:20 final size:20
Alignment explanation
Indices: 74835846--74835885 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
74835836 TTAAATTCTC
74835846 AAAGATAAAT-ACAAATAAAT
1 AAAGATAAATGA-AAATAAAT
74835866 AAAGATAAATGAAAATAAAT
1 AAAGATAAATGAAAATAAAT
74835886 CCTAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATGAAAATAAAT
Found at i:74841334 original size:19 final size:19
Alignment explanation
Indices: 74841307--74841344 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
74841297 TTGAGATTGC
*
74841307 CAACTTATTTGCTTGAAAT
1 CAACCTATTTGCTTGAAAT
74841326 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCTTGAAAT
74841345 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (19 bp):
CAACCTATTTGCTTGAAAT
Found at i:74843242 original size:5 final size:6
Alignment explanation
Indices: 74843229--74843269 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
74843219 ATAATTTAAT
*
74843229 AAATAA AAATAA AAATTTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
74843270 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:74843257 original size:20 final size:21
Alignment explanation
Indices: 74843221--74843264 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
74843211 AATTACAAAT
74843221 AATTTAATAAATAAAAATAAA
1 AATTTAATAAATAAAAATAAA
*
74843242 AATTTAA-AACTAAAAATAAA
1 AATTTAATAAATAAAAATAAA
74843262 AAT
1 AAT
74843265 AAAAAACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AATTTAATAAATAAAAATAAA
Found at i:74843270 original size:20 final size:20
Alignment explanation
Indices: 74843232--74843271 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
74843222 ATTTAATAAA
**
74843232 TAAAAATAAAAATTTAAAAC
1 TAAAAATAAAAATAAAAAAC
74843252 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
74843272 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:74843303 original size:9 final size:9
Alignment explanation
Indices: 74843289--74843338 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
74843279 TTTATACAAA
74843289 TAATTCGGT
1 TAATTCGGT
*
74843298 TAATTCGGA
1 TAATTCGGT
74843307 TAATTCGAG-
1 TAATTCG-GT
*
74843316 TAATTTGGT
1 TAATTCGGT
74843325 TAATTCGGT
1 TAATTCGGT
74843334 TAATT
1 TAATT
74843339 TTATACTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 1 0.03
9 34 0.94
10 1 0.03
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:74845937 original size:32 final size:32
Alignment explanation
Indices: 74845901--74845961 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
74845891 ATGTGTGTAT
* *
74845901 TGTTATTTTAAAAGTCGGTATAATTTTTTTTA
1 TGTTATTTTAAAAGTCGATATAAATTTTTTTA
*
74845933 TGTTATTTTAAAAGTTGATATAAATTTTT
1 TGTTATTTTAAAAGTCGATATAAATTTTT
74845962 AACTCATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (32 bp):
TGTTATTTTAAAAGTCGATATAAATTTTTTTA
Found at i:74849876 original size:15 final size:15
Alignment explanation
Indices: 74849856--74849884 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74849846 ATGTATAAGT
74849856 GTAACTTTAGTCATG
1 GTAACTTTAGTCATG
74849871 GTAACTTTAGTCAT
1 GTAACTTTAGTCAT
74849885 TACTTGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (15 bp):
GTAACTTTAGTCATG
Found at i:74851403 original size:32 final size:32
Alignment explanation
Indices: 74851337--74851404 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
74851327 TTTTTGTTAA
* *
74851337 TGTTGGATTCTAAAATTTTAGTTTATTATATT
1 TGTTGGATTCTAAAATTTTAGTCTATGATATT
*
74851369 TGTTGGATTCTGAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATATT
74851401 TGTT
1 TGTT
74851405 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATATT
Found at i:74851430 original size:27 final size:27
Alignment explanation
Indices: 74851400--74851472 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
74851390 TGTCTTGATT
74851400 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
74851427 TTGTTAGATATTGAGTTTATTATGTTTTAAGC
1 TTGTTAGATATT--G---ATTATGTTTCAAGC
*
74851459 TTGTTGGATATTGA
1 TTGTTAGATATTGA
74851473 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 13 0.33
29 1 0.03
30 1 0.03
32 24 0.62
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:74852458 original size:22 final size:22
Alignment explanation
Indices: 74852432--74852498 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 22
74852422 AATGTGGTGT
74852432 AATATTAGTTATGCACTTGGAC
1 AATATTAGTTATGCACTTGGAC
* **
74852454 AATATTGTTGTTAT-CA-TGTGGTGT
1 AATA-T-TAGTTATGCACT-TGG-AC
74852478 AATATTAGTTATGCACTTGGA
1 AATATTAGTTATGCACTTGGA
74852499 TAATGTTGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 12
0.67 0.10 0.24
Matches are distributed among these distances:
22 11 0.32
23 12 0.35
24 11 0.32
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (22 bp):
AATATTAGTTATGCACTTGGAC
Found at i:74852476 original size:46 final size:46
Alignment explanation
Indices: 74852423--74852551 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
74852413 GATACTTTTA
*
74852423 ATGTGGTGTAATATTAGTTATGCACTTGGACAATATTGTTGTTATC
1 ATGTGGTGTAATATTAGTTATGCACTTGGATAATATTGTTGTTATC
*
74852469 ATGTGGTGTAATATTAGTTATGCACTTGGATAATGTTGTTGTTATC
1 ATGTGGTGTAATATTAGTTATGCACTTGGATAATATTGTTGTTATC
* * * *
74852515 ATGTGGTGTAATACTAATTATGTATTTGGATAATATT
1 ATGTGGTGTAATATTAGTTATGCACTTGGATAATATT
74852552 ATTAATTTCT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.27, C:0.06, G:0.22, T:0.45
Consensus pattern (46 bp):
ATGTGGTGTAATATTAGTTATGCACTTGGATAATATTGTTGTTATC
Found at i:74852502 original size:22 final size:22
Alignment explanation
Indices: 74852431--74852502 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
74852421 TAATGTGGTG
74852431 TAATATTAGTTATGCACTTGGA
1 TAATATTAGTTATGCACTTGGA
* * *
74852453 CAATATTGTTGTTAT-CA-TGTGGTG
1 TAATA-T-TAGTTATGCACT-TGG-A
74852477 TAATATTAGTTATGCACTTGGA
1 TAATATTAGTTATGCACTTGGA
74852499 TAAT
1 TAAT
74852503 GTTGTTGTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
22 15 0.39
23 12 0.32
24 11 0.29
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.43
Consensus pattern (22 bp):
TAATATTAGTTATGCACTTGGA
Found at i:74852982 original size:29 final size:29
Alignment explanation
Indices: 74852945--74853016 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
74852935 CCAGAAAAGT
* *
74852945 AAATCATTTTCCAGAAATCATTTTTCAAA
1 AAATTATTTTCCAGAAATCATTTTCCAAA
* * * *
74852974 AAATTATTTTCTAAAAATTATTTTCCAGA
1 AAATTATTTTCCAGAAATCATTTTCCAAA
74853003 AAA-TATTTTACCAG
1 AAATTATTTT-CCAG
74853017 CAAACAAACG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
28 6 0.18
29 28 0.82
ACGTcount: A:0.42, C:0.14, G:0.04, T:0.40
Consensus pattern (29 bp):
AAATTATTTTCCAGAAATCATTTTCCAAA
Found at i:74853016 original size:15 final size:15
Alignment explanation
Indices: 74852945--74853016 Score: 69
Period size: 14 Copynumber: 4.9 Consensus size: 15
74852935 CCAGAAAAGT
*
74852945 AAATCATTTTCCAG-
1 AAATTATTTTCCAGA
* * *
74852959 AAATCATTTTTCAAA
1 AAATTATTTTCCAGA
*
74852974 AAATTATTTTCTA-A
1 AAATTATTTTCCAGA
74852988 AAATTATTTTCCAGA
1 AAATTATTTTCCAGA
74853003 AAA-TATTTTACCAG
1 AAATTATTTT-CCAG
74853017 CAAACAAACG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
14 31 0.63
15 18 0.37
ACGTcount: A:0.42, C:0.14, G:0.04, T:0.40
Consensus pattern (15 bp):
AAATTATTTTCCAGA
Found at i:74859042 original size:27 final size:27
Alignment explanation
Indices: 74859004--74859060 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
74858994 GCAATATATG
*
74859004 TAAAAACAATTTAAAGTATAAATTTAT
1 TAAAAACAATTTAAAATATAAATTTAT
74859031 TAAAAACAATTTAAAATATAAATTTAT
1 TAAAAACAATTTAAAATATAAATTTAT
74859058 TAA
1 TAA
74859061 TATATGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (27 bp):
TAAAAACAATTTAAAATATAAATTTAT
Found at i:74859191 original size:20 final size:19
Alignment explanation
Indices: 74859146--74859183 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
74859136 CATCCAAACA
74859146 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
74859165 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
74859184 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:74859574 original size:12 final size:13
Alignment explanation
Indices: 74859559--74859591 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
74859549 TCCCTCTCTC
74859559 TTCTTTCTTT-TT
1 TTCTTTCTTTCTT
74859571 TTCTTTCTTTCTT
1 TTCTTTCTTTCTT
*
74859584 TCCTTTCT
1 TTCTTTCT
74859592 CGCCGCCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTCTTTCTTTCTT
Found at i:74861778 original size:12 final size:12
Alignment explanation
Indices: 74861761--74861787 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74861751 ACTGACCATA
74861761 ATTTCAAACATT
1 ATTTCAAACATT
74861773 ATTTCAAACATT
1 ATTTCAAACATT
74861785 ATT
1 ATT
74861788 ACATTGCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (12 bp):
ATTTCAAACATT
Found at i:74862368 original size:21 final size:21
Alignment explanation
Indices: 74862342--74862383 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
74862332 AAAAGATAGT
74862342 AGACTATTACTCCGGGCAAGA
1 AGACTATTACTCCGGGCAAGA
74862363 AGACTATTACTCCGGGCAAGA
1 AGACTATTACTCCGGGCAAGA
74862384 CCCTATAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (21 bp):
AGACTATTACTCCGGGCAAGA
Found at i:74864059 original size:21 final size:21
Alignment explanation
Indices: 74864033--74864073 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
74864023 TATTTCACTA
74864033 TTTTAAAT-ATAAAATATTTAT
1 TTTTAAATAATAAAA-ATTTAT
74864054 TTTTAAATAATAAAAATTTA
1 TTTTAAATAATAAAAATTTA
74864074 AATTTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTAAATAATAAAAATTTAT
Found at i:74864079 original size:21 final size:21
Alignment explanation
Indices: 74864034--74864079 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
74864024 ATTTCACTAT
**
74864034 TTTAAATATAAAATATTTATT
1 TTTAAATATAAAATATTTAAA
74864055 TTTAAATAATAAAA-ATTTAAA
1 TTTAAAT-ATAAAATATTTAAA
74864076 TTTA
1 TTTA
74864080 TTATAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAAATATAAAATATTTAAA
Found at i:74868350 original size:28 final size:28
Alignment explanation
Indices: 74868318--74868401 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
74868308 AACTTCGATC
74868318 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74868346 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
74868368 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74868396 ACGTGT
1 ACGTGT
74868402 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74868391 original size:50 final size:49
Alignment explanation
Indices: 74868270--74868458 Score: 243
Period size: 50 Copynumber: 3.8 Consensus size: 49
74868260 TGAGGTCGCA
* * * *
74868270 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACG
* **
74868321 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
74868371 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
74868420 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
74868459 GCTTTGGCTA
Statistics
Matches: 121, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
49 41 0.34
50 46 0.38
51 34 0.28
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:74871212 original size:15 final size:16
Alignment explanation
Indices: 74871194--74871227 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
74871184 TCTGGTATCA
74871194 TGGATTTCTTTATT-T
1 TGGATTTCTTTATTCT
74871209 TGGATTTCTTTATTCT
1 TGGATTTCTTTATTCT
74871225 TGG
1 TGG
74871228 CTTCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.12, C:0.09, G:0.18, T:0.62
Consensus pattern (16 bp):
TGGATTTCTTTATTCT
Found at i:74874126 original size:50 final size:49
Alignment explanation
Indices: 74874010--74874185 Score: 196
Period size: 50 Copynumber: 3.5 Consensus size: 49
74874000 TGAGGTCGCA
* *
74874010 TGTGTAGTACTAAGTGCAGGCTACT--ATGCATACTCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATG--TACTAGATAA-TT-GGTCACG
* * **
74874061 TGTGTAGTACTAAGTGCAGGCCACTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACT-AGATAATT-GGTCACG
* * *
74874111 TGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTGGTCACG
74874160 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74874186 TGCATACCAG
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
49 31 0.29
50 44 0.41
51 30 0.28
53 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTGGTCACG
Found at i:74878556 original size:23 final size:21
Alignment explanation
Indices: 74878518--74878564 Score: 51
Period size: 23 Copynumber: 2.1 Consensus size: 21
74878508 CATTACTGAA
74878518 ATTTACGAATTAAATACTA-AC
1 ATTTACGAATTAAATA-TACAC
*
74878539 ATTTCACGATATTTAATATACAC
1 ATTT-ACGA-ATTAAATATACAC
74878562 ATT
1 ATT
74878565 AAGAACCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
23 12 0.55
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (21 bp):
ATTTACGAATTAAATATACAC
Found at i:74879825 original size:42 final size:42
Alignment explanation
Indices: 74879770--74879975 Score: 283
Period size: 42 Copynumber: 4.9 Consensus size: 42
74879760 AAGCACATAT
* * *
74879770 GCTAAACTGAAACCCATAAGGGTTGAA-TGGAAGCTC-ATAAGA
1 GCTAAACTAAAACCCAGAAGGGTTAAACT-GAAGCTCGA-AAGA
* * *
74879812 GCTGAA-TGAAAACCTATAAGGGTTAAACTGAAGCTCGAAAGA
1 GCTAAACT-AAAACCCAGAAGGGTTAAACTGAAGCTCGAAAGA
*
74879854 GTTAAACTAAAACCCAGAAGGGTTAAACTGAAGCTCGAAAGA
1 GCTAAACTAAAACCCAGAAGGGTTAAACTGAAGCTCGAAAGA
*
74879896 GCTAAACTAAAACCCAGAAAGGTTAAACTGAAGCTCGAAAGA
1 GCTAAACTAAAACCCAGAAGGGTTAAACTGAAGCTCGAAAGA
*
74879938 GCTAAACTAAAACCCAGAAAGGTTAAACTGAAGCTCGA
1 GCTAAACTAAAACCCAGAAGGGTTAAACTGAAGCTCGA
74879976 TTTACTTGGG
Statistics
Matches: 150, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
41 1 0.01
42 146 0.97
43 3 0.02
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (42 bp):
GCTAAACTAAAACCCAGAAGGGTTAAACTGAAGCTCGAAAGA
Found at i:74879857 original size:21 final size:21
Alignment explanation
Indices: 74879833--74879975 Score: 130
Period size: 21 Copynumber: 6.8 Consensus size: 21
74879823 ACCTATAAGG
74879833 GTTAAACTGAAGCTCGAAAGA
1 GTTAAACTGAAGCTCGAAAGA
* * * *
74879854 GTTAAACTAAAAC-CCAGAAGG
1 GTTAAACTGAAGCTCGA-AAGA
74879875 GTTAAACTGAAGCTCGAAAGA
1 GTTAAACTGAAGCTCGAAAGA
* * * *
74879896 GCTAAACTAAAACCCAGAAAG-
1 GTTAAACTGAAGCTC-GAAAGA
74879917 GTTAAACTGAAGCTCGAAAGA
1 GTTAAACTGAAGCTCGAAAGA
* * * *
74879938 GCTAAACTAAAACCCAGAAAG-
1 GTTAAACTGAAGCTC-GAAAGA
74879959 GTTAAACTGAAGCTCGA
1 GTTAAACTGAAGCTCGA
74879976 TTTACTTGGG
Statistics
Matches: 93, Mismatches: 24, Indels: 11
0.73 0.19 0.09
Matches are distributed among these distances:
20 9 0.10
21 72 0.77
22 12 0.13
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.16
Consensus pattern (21 bp):
GTTAAACTGAAGCTCGAAAGA
Found at i:74886413 original size:21 final size:20
Alignment explanation
Indices: 74886383--74886422 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
74886373 GATGGACAGA
*
74886383 TTTTTTCTTTGATTTTCCAT
1 TTTTTTCTTTGAATTTCCAT
*
74886403 TTTTATTCTTTTAATTTCCA
1 TTTT-TTCTTTGAATTTCCA
74886423 AATGACAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTTTCTTTGAATTTCCAT
Found at i:74891863 original size:19 final size:19
Alignment explanation
Indices: 74891827--74891863 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74891817 TGAGACAGGG
* *
74891827 GACACGCCCGTGTGCTCTT
1 GACACGCCCATGTCCTCTT
74891846 GACACGCCCATGTCCTCT
1 GACACGCCCATGTCCTCT
74891864 AGTCGTGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.14, C:0.41, G:0.22, T:0.24
Consensus pattern (19 bp):
GACACGCCCATGTCCTCTT
Found at i:74898283 original size:22 final size:23
Alignment explanation
Indices: 74898253--74898306 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
74898243 TGGACTTTTA
74898253 TTGGTTTTTATCTTA-ATTTATTT
1 TTGGTTTTTAT-TTATATTTATTT
* *
74898276 TT-GTTTTTGTTTATTTTTATTT
1 TTGGTTTTTATTTATATTTATTT
74898298 TTGGTTTTT
1 TTGGTTTTT
74898307 CTCTAACGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 16 0.59
23 8 0.30
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.76
Consensus pattern (23 bp):
TTGGTTTTTATTTATATTTATTT
Found at i:74898288 original size:16 final size:16
Alignment explanation
Indices: 74898269--74898300 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74898259 TTTATCTTAA
*
74898269 TTTATTTTTGTTTTTG
1 TTTATTTTTATTTTTG
74898285 TTTATTTTTATTTTTG
1 TTTATTTTTATTTTTG
74898301 GTTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (16 bp):
TTTATTTTTATTTTTG
Found at i:74898787 original size:43 final size:44
Alignment explanation
Indices: 74898704--74898798 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 44
74898694 AACTTCAGGG
** * *
74898704 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCCACCTCAGAA
1 AGATAAGA-CTTCAATCTTCAACCTGCTCTCCTGCCACCTCAGAA
* * *
74898749 AGATAAGA-TTCATTCTTCAACCTGCTCTCCTGCTACCTCAGAG
1 AGATAAGACTTCAATCTTCAACCTGCTCTCCTGCCACCTCAGAA
74898792 AGATAAG
1 AGATAAG
74898799 GCTGGTGGCT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 35 0.81
45 8 0.19
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
AGATAAGACTTCAATCTTCAACCTGCTCTCCTGCCACCTCAGAA
Found at i:74898927 original size:173 final size:169
Alignment explanation
Indices: 74898534--74899157 Score: 667
Period size: 173 Copynumber: 3.6 Consensus size: 169
74898524 TTGGAAAATT
* * * *
74898534 AATCTTCAATCTTCAGTCTACTTCCTTACTACCTCAGGAAGACAAGACTCATTCTTCAACCTGCT
1 AATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* **
74898599 TTCTTGCTACCTCAGAGAGATAAGGCTGAAGGTAAAATCTGCTTCATTTCTAATACATAGG-GAT
66 CTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTTC----C-AATACAT-GGAGAT
* *
74898663 AAAATTCACTATCTTCGATCTGCTCCGCTGCAACTTCAGGGAGATAA
125 AAAATTCAC-ATCTTAGATCTGCTCC-CTACAACTTCAGGGAGATAA
* * * * * *
74898710 GATCTTCAATCTTCAGTCTGCTTTCTTGCCACCTCAGAAAGATAAGATTCATTCTTCAACCTGCT
1 AATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* * *
74898775 CTCCTGCTACCTCAGAGAGATAAGGCTGGTGGCTTAAATCTGC-TCC-ATACATGGAGATAAGAT
66 CTCTTGCTACCTCAGAGAGATAAGGCTGGTGG-TAAAATCTGCTTCCAATACATGGAGATAAAAT
*
74898838 TAATCATCTATGAAGATCTGCTCCACTACAACTTCAGGGAGATAA
130 TCA-CATCT-T--AGATCTGCTCC-CTACAACTTCAGGGAGATAA
* *
74898883 AATCTTCAATCCTCAGTTTGCTTCCTTGCTACCTTAGGAAGATAAGACTCATTCTTCAACCTGCT
1 AATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* * * *
74898948 CTCTTGCTATCTCAGAGAGATAACGCTGGTGGTAAAATCTGCTCCATTGCCGATATATGGAGATA
66 CTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTG---C-TT-CCAATACATGGAGATA
* * * *
74899013 ATATTCACCATTTTTGATCTGCATACCTACAACTTC------A-AA
126 AAATTCA-CATCTTAGATCTGC-TCCCTACAACTTCAGGGAGATAA
* *
74899052 AATCTTTAATTCC-CAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTATTCTTCAACCTGC
1 AATCTTCAA-TCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGC
* *
74899116 TCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTTAAATCT
65 TCTCTTGCTACCTCAGAGAGATAAGGCTGGTGG-TAAAATCT
74899158 ACCCCGCTGC
Statistics
Matches: 387, Mismatches: 45, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
169 90 0.23
170 30 0.08
171 2 0.01
172 9 0.02
173 115 0.30
175 1 0.00
176 104 0.27
177 12 0.03
178 3 0.01
179 21 0.05
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (169 bp):
AATCTTCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
CTCTTGCTACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTTCCAATACATGGAGATAAAATT
CACATCTTAGATCTGCTCCCTACAACTTCAGGGAGATAA
Found at i:74899200 original size:125 final size:125
Alignment explanation
Indices: 74899042--74899282 Score: 419
Period size: 125 Copynumber: 1.9 Consensus size: 125
74899032 TGCATACCTA
* *
74899042 CAACTTCAAAAATCTTTAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTATTCT
1 CAACTTCAAAAATCTTCAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCT
* *
74899107 TCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTTAAATCTACCCCGCTG
66 TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGACTTAAATCTACCCCGCTG
* * *
74899167 CAACTTCAAGAATCTTCAATTCCTAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACTCATTCT
1 CAACTTCAAAAATCTTCAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCT
74899232 TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGACTTAAATCT
66 TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGACTTAAATCT
74899283 GCTCCATTGC
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
125 109 1.00
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32
Consensus pattern (125 bp):
CAACTTCAAAAATCTTCAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCT
TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGACTTAAATCTACCCCGCTG
Found at i:74900867 original size:53 final size:53
Alignment explanation
Indices: 74900758--74900867 Score: 141
Period size: 53 Copynumber: 2.1 Consensus size: 53
74900748 TTATTTTTTA
* **
74900758 TTTTATTGAGTCTCAAAGCACCCTTTGCGGGTTTTCACTTTAGCCCTTTTCAT
1 TTTTATTGAGTCTCAAAGCACCCTTTGCGGGTTTTCACCTTAGCCCCCTTCAT
* * * *
74900811 TTTTATT-AGGTCTCAAAGCGCCCTTTGCGGGTTTTCGCCTTGGCCCCCTTCTT
1 TTTTATTGA-GTCTCAAAGCACCCTTTGCGGGTTTTCACCTTAGCCCCCTTCAT
74900864 TTTT
1 TTTT
74900868 TTTTGTTGAG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
52 1 0.02
53 48 0.98
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.44
Consensus pattern (53 bp):
TTTTATTGAGTCTCAAAGCACCCTTTGCGGGTTTTCACCTTAGCCCCCTTCAT
Found at i:74917051 original size:31 final size:31
Alignment explanation
Indices: 74917013--74917075 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
74917003 TTATAATAGG
74917013 TTAGCCCAGATTAAAAGTGATCTCATTTGGT
1 TTAGCCCAGATTAAAAGTGATCTCATTTGGT
74917044 TTAGCCCAGATTAAAAGTGATCTCATTTGGT
1 TTAGCCCAGATTAAAAGTGATCTCATTTGGT
74917075 T
1 T
74917076 AAGGTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (31 bp):
TTAGCCCAGATTAAAAGTGATCTCATTTGGT
Found at i:74928802 original size:22 final size:23
Alignment explanation
Indices: 74928776--74928821 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
74928766 CAACCAAACC
74928776 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
74928798 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
74928821 A
1 A
74928822 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:74928827 original size:23 final size:23
Alignment explanation
Indices: 74928783--74928827 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
74928773 ACCAATTCAA
*
74928783 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
74928806 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
74928828 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:74931430 original size:12 final size:12
Alignment explanation
Indices: 74931413--74931444 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
74931403 TTTTTTACCC
74931413 AATTTCTTCAAT
1 AATTTCTTCAAT
74931425 AATTTCTTCAAT
1 AATTTCTTCAAT
74931437 AATTTCTT
1 AATTTCTT
74931445 TTTCTAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:74940654 original size:2 final size:2
Alignment explanation
Indices: 74940647--74940702 Score: 58
Period size: 2 Copynumber: 28.0 Consensus size: 2
74940637 GGGAGGGAGG
* * * * * *
74940647 GA GA GA GA GA GA GA GA AA GG GA GA GG GA CA GC GA GC GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
74940689 GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA
74940703 TTAGGTAGGT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.45, C:0.05, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:74940824 original size:6 final size:6
Alignment explanation
Indices: 74940813--74940845 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
74940803 CCAAAGCATA
74940813 TTTTCT TTTTCT TTTT-T TTTTC- TTTTCT TTTTC
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTC
74940846 CTAATAGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:74940832 original size:11 final size:11
Alignment explanation
Indices: 74940813--74940845 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
74940803 CCAAAGCATA
74940813 TTTTCTTTTTC
1 TTTTCTTTTTC
*
74940824 TTTTTTTTTTC
1 TTTTCTTTTTC
74940835 TTTTCTTTTTC
1 TTTTCTTTTTC
74940846 CTAATAGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:74956479 original size:6 final size:6
Alignment explanation
Indices: 74956443--74956468 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74956433 AGGAAATAGA
74956443 GAGAGG GAGAGG GAGAGG GAGAGG GA
1 GAGAGG GAGAGG GAGAGG GAGAGG GA
74956469 AAGAGGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:74956482 original size:18 final size:18
Alignment explanation
Indices: 74956440--74956485 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
74956430 AGAAGGAAAT
*
74956440 AGAGAGAGGGAGAGGGAG
1 AGAGAGAGGGAAAGGGAG
*
74956458 AGGGAGAGGGAAAGAGGAAG
1 AGAGAGAGGGAAAG-GG-AG
74956478 AGAGAGAG
1 AGAGAGAG
74956486 AGATTAGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.52
19 2 0.09
20 9 0.39
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (18 bp):
AGAGAGAGGGAAAGGGAG
Found at i:74963665 original size:33 final size:33
Alignment explanation
Indices: 74963627--74963694 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
74963617 TTGCTTAGTG
74963627 ATTGGATAAAAAGTGGGTTGGTGCTGCCAATGT
1 ATTGGATAAAAAGTGGGTTGGTGCTGCCAATGT
74963660 ATTGGATAAAAAGTGGGTTGGTGCTGCCAATGT
1 ATTGGATAAAAAGTGGGTTGGTGCTGCCAATGT
74963693 AT
1 AT
74963695 CAAGTGACAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.09, G:0.32, T:0.31
Consensus pattern (33 bp):
ATTGGATAAAAAGTGGGTTGGTGCTGCCAATGT
Found at i:74972874 original size:42 final size:42
Alignment explanation
Indices: 74972815--74972899 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
74972805 AATGTTGAGA
74972815 CAGTCCAACATGTTGTGCGAGACTGTTTTTGCCAGAAACGTT
1 CAGTCCAACATGTTGTGCGAGACTGTTTTTGCCAGAAACGTT
74972857 CAGTCCAACATGTTGTGCGAGACTGTTTTTGCCAGAAACGTT
1 CAGTCCAACATGTTGTGCGAGACTGTTTTTGCCAGAAACGTT
74972899 C
1 C
74972900 GTGGTTCGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (42 bp):
CAGTCCAACATGTTGTGCGAGACTGTTTTTGCCAGAAACGTT
Found at i:74981095 original size:31 final size:31
Alignment explanation
Indices: 74981043--74981102 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
74981033 GGATCACTAT
74981043 TTAAGGCTTGAATTTGACAATTATTTTCATG
1 TTAAGGCTTGAATTTGACAATTATTTTCATG
* * *
74981074 TTAAGTCTT-AATTTAGGCAATTGTTTTCA
1 TTAAGGCTTGAATTT-GACAATTATTTTCA
74981103 CATAAGGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (31 bp):
TTAAGGCTTGAATTTGACAATTATTTTCATG
Found at i:74985588 original size:16 final size:16
Alignment explanation
Indices: 74985567--74985600 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
74985557 ATTTATATAC
74985567 ATAATCATACAT-AATA
1 ATAATCATA-ATAAATA
74985583 ATAATCATAATAAATA
1 ATAATCATAATAAATA
74985599 AT
1 AT
74985601 CAATTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATCATAATAAATA
Found at i:74986051 original size:27 final size:28
Alignment explanation
Indices: 74986014--74986071 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
74986004 AATACATAAT
*
74986014 TCAATTTCCAA-TCAATATACAGTTTCAA
1 TCAATTTCCAATTCAATACAC-GTTTCAA
*
74986042 TCAA-TTCCAATTCAATACACTTTTCAA
1 TCAATTTCCAATTCAATACACGTTTCAA
74986069 TCA
1 TCA
74986072 TACACATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.38, C:0.24, G:0.02, T:0.36
Consensus pattern (28 bp):
TCAATTTCCAATTCAATACACGTTTCAA
Found at i:74986774 original size:5 final size:5
Alignment explanation
Indices: 74986754--74986822 Score: 52
Period size: 5 Copynumber: 13.8 Consensus size: 5
74986744 GTTTATGTTC
* * *
74986754 TTTAT CTTTGT TTTAT TTTAT TTTA- TTTAT TTTAT GTTAT GTTT-T ATTAT
1 TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT
* * *
74986804 ATTAT TATAT TATAT TTTA
1 TTTAT TTTAT TTTAT TTTA
74986823 GTGAATTAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
4 6 0.12
5 40 0.77
6 6 0.12
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.71
Consensus pattern (5 bp):
TTTAT
Found at i:74987275 original size:46 final size:46
Alignment explanation
Indices: 74987208--74987297 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
74987198 CACTTAGACA
74987208 GAGGCAATCAGACGATTGAGAAAGGAGATAGGGAGACATTACCTTT
1 GAGGCAATCAGACGATTGAGAAAGGAGATAGGGAGACATTACCTTT
*
74987254 GAGGCAATCAGACGATTGAGAAAGGAGATCGGGAGACATTACCT
1 GAGGCAATCAGACGATTGAGAAAGGAGATAGGGAGACATTACCT
74987298 CTTAGTTTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.37, C:0.14, G:0.31, T:0.18
Consensus pattern (46 bp):
GAGGCAATCAGACGATTGAGAAAGGAGATAGGGAGACATTACCTTT
Found at i:74989365 original size:21 final size:20
Alignment explanation
Indices: 74989339--74989393 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
74989329 TTAAAAACTA
74989339 TTAAAATATTATAAAATTTG
1 TTAAAATATTATAAAATTTG
74989359 -TATAAA-ATTATAGAAATTTG
1 TTA-AAATATTATA-AAATTTG
74989379 TTAAAATATTATAAA
1 TTAAAATATTATAAA
74989394 CTTAGAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
19 8 0.26
20 15 0.48
21 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
TTAAAATATTATAAAATTTG
Found at i:74989368 original size:19 final size:19
Alignment explanation
Indices: 74989346--74989385 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
74989336 CTATTAAAAT
74989346 ATTATA-AAATTTGTATAAA
1 ATTATAGAAATTTGT-TAAA
74989365 ATTATAGAAATTTGTTAAA
1 ATTATAGAAATTTGTTAAA
74989384 AT
1 AT
74989386 ATTATAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (19 bp):
ATTATAGAAATTTGTTAAA
Found at i:74989439 original size:9 final size:9
Alignment explanation
Indices: 74989427--74989474 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
74989417 AATTATAGAA
74989427 AAAAATTAT
1 AAAAATTAT
*
74989436 AAAAAGTAT
1 AAAAATTAT
74989445 AAAAATTAT
1 AAAAATTAT
* *
74989454 TAAAACTAT
1 AAAAATTAT
*
74989463 AAAAAATAT
1 AAAAATTAT
74989472 AAA
1 AAA
74989475 TTTTCTTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (9 bp):
AAAAATTAT
Found at i:74989450 original size:18 final size:18
Alignment explanation
Indices: 74989427--74989474 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
74989417 AATTATAGAA
*
74989427 AAAAATTATAAAAAGTAT
1 AAAAATTATAAAAACTAT
*
74989445 AAAAATTATTAAAACTAT
1 AAAAATTATAAAAACTAT
*
74989463 AAAAAATATAAA
1 AAAAATTATAAA
74989475 TTTTCTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAAATTATAAAAACTAT
Found at i:74989744 original size:10 final size:9
Alignment explanation
Indices: 74989727--74989751 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
74989717 CAAACAGTAG
74989727 TATTTTTTT
1 TATTTTTTT
74989736 TATTTTTTT
1 TATTTTTTT
74989745 TATTTTT
1 TATTTTT
74989752 CTATAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TATTTTTTT
Found at i:74989761 original size:19 final size:19
Alignment explanation
Indices: 74989746--74989784 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
74989736 TATTTTTTTT
74989746 ATTTTTCTATAATTTTATA
1 ATTTTTCTATAATTTTATA
* *
74989765 ATTTTTTTATAATATTATA
1 ATTTTTCTATAATTTTATA
74989784 A
1 A
74989785 CAGTTTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTTCTATAATTTTATA
Found at i:74989839 original size:19 final size:20
Alignment explanation
Indices: 74989817--74989858 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
74989807 AGTTTTGAAT
*
74989817 TTTAAATAATAT-TTTATAA
1 TTTAAATAATATGCTTATAA
*
74989836 TTTATATAATATGCTTATAA
1 TTTAAATAATATGCTTATAA
74989856 TTT
1 TTT
74989859 TCGACAACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTAAATAATATGCTTATAA
Found at i:74990045 original size:20 final size:21
Alignment explanation
Indices: 74990017--74990056 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
74990007 TTAATTAGTA
*
74990017 ATTTTACT-ATTTTTTTAATT
1 ATTTCACTAATTTTTTTAATT
74990037 ATTTCACTAGATTTTTTTAA
1 ATTTCACTA-ATTTTTTTAA
74990057 AACATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTCACTAATTTTTTTAATT
Found at i:74993282 original size:3 final size:3
Alignment explanation
Indices: 74993274--74993307 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
74993264 AGTTTACCCT
*
74993274 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
74993308 GTGGCATTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:74994362 original size:29 final size:29
Alignment explanation
Indices: 74994323--74994381 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
74994313 AAATTGTGTT
* * * *
74994323 ACCTTTTAAAATAGTTAAATAAATATTAA
1 ACCTTTCAAAAGAATTAAATAAAAATTAA
74994352 ACCTTTCAAAAGAATTAAATAAAAATTAA
1 ACCTTTCAAAAGAATTAAATAAAAATTAA
74994381 A
1 A
74994382 TTTTTTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.32
Consensus pattern (29 bp):
ACCTTTCAAAAGAATTAAATAAAAATTAA
Found at i:74995990 original size:31 final size:31
Alignment explanation
Indices: 74995955--74996018 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
74995945 CTTAATAGCC
*
74995955 CAATGACTTAAAT-AAAATCTTTCGAATGGTT
1 CAATGACTTAAATGAAAA-CTTTCGAATAGTT
*
74995986 CAATGACTTAAATGAAAACTTTTGAATAGTT
1 CAATGACTTAAATGAAAACTTTCGAATAGTT
74996017 CA
1 CA
74996019 GCGACCATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 26 0.87
32 4 0.13
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (31 bp):
CAATGACTTAAATGAAAACTTTCGAATAGTT
Found at i:74998562 original size:10 final size:10
Alignment explanation
Indices: 74998549--74998621 Score: 62
Period size: 10 Copynumber: 7.4 Consensus size: 10
74998539 TTAAAATTAA
*
74998549 TTTTTATAGTT
1 TTTTTATA-AT
*
74998560 TTTTTATAAG
1 TTTTTATAAT
*
74998570 TTTTTA-CAT
1 TTTTTATAAT
74998579 TATTTTATAAT
1 T-TTTTATAAT
74998590 TTTTTATAAT
1 TTTTTATAAT
*
74998600 TTTTT-TAAA
1 TTTTTATAAT
*
74998609 TTTATAT-AT
1 TTTTTATAAT
74998618 TTTT
1 TTTT
74998622 AAGTGTTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
9 13 0.26
10 26 0.52
11 11 0.22
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.68
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:75002382 original size:22 final size:24
Alignment explanation
Indices: 75002352--75002406 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 24
75002342 TAATTTACAA
*
75002352 AATATATTAATTTAA-TTATAT-TC
1 AATA-ATTAATTTAAGTAATATATC
75002375 AATAATTAATTTAAGTAATATATC
1 AATAATTAATTTAAGTAATATATC
75002399 AGATAATT
1 A-ATAATT
75002407 TTATAACTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 10 0.36
23 9 0.32
24 3 0.11
25 6 0.21
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (24 bp):
AATAATTAATTTAAGTAATATATC
Found at i:75002504 original size:5 final size:5
Alignment explanation
Indices: 75002494--75002584 Score: 173
Period size: 5 Copynumber: 18.2 Consensus size: 5
75002484 GTAAACAAAG
*
75002494 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATGA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
75002544 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA T
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA T
75002585 TATTGTCAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 84 1.00
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:75005001 original size:15 final size:16
Alignment explanation
Indices: 75004963--75005004 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
75004953 ATAACTCTAG
*
75004963 TTTTATTGTTAAAATTA
1 TTTTATT-TTAAAAATA
75004980 TTATTATTTTAAAAATA
1 TT-TTATTTTAAAAATA
75004997 -TTTATTTT
1 TTTTATTTT
75005005 TATATATTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 7 0.30
16 1 0.04
17 10 0.43
18 5 0.22
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (16 bp):
TTTTATTTTAAAAATA
Found at i:75005002 original size:18 final size:18
Alignment explanation
Indices: 75004965--75004998 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75004955 AACTCTAGTT
*
75004965 TTATTGTTAAAATTATTA
1 TTATTGTTAAAAATATTA
75004983 TTATT-TTAAAAATATT
1 TTATTGTTAAAAATATT
75004999 TATTTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
TTATTGTTAAAAATATTA
Found at i:75005058 original size:23 final size:26
Alignment explanation
Indices: 75005015--75005087 Score: 71
Period size: 29 Copynumber: 2.7 Consensus size: 26
75005005 TATATATTGC
*
75005015 ATATTTTTTAATATTATTTAAG-TA-TA
1 ATATTTTTTAAT-TT-GTTAAGATATTA
75005041 AT-TTTTTTAATTTGTTAAGAAATATTTA
1 ATATTTTTTAATTTGTTAAG--ATA-TTA
75005069 ATATTTTTTAATTTGTTAA
1 ATATTTTTTAATTTGTTAA
75005088 AAAATATTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
23 5 0.12
24 2 0.05
25 9 0.22
26 4 0.10
28 4 0.10
29 16 0.40
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (26 bp):
ATATTTTTTAATTTGTTAAGATATTA
Found at i:75005108 original size:26 final size:29
Alignment explanation
Indices: 75005048--75005105 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
75005038 ATAATTTTTT
* **
75005048 TAATTTGTTAAGAAATATTTAATATTTTT
1 TAATTTGTTAAAAAATATTTAATATTTAA
75005077 TAATTTGTTAAAAAATATTT-AT-TTTAA
1 TAATTTGTTAAAAAATATTTAATATTTAA
75005104 TA
1 TA
75005106 TTTTTAGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 5 0.19
28 2 0.08
29 19 0.73
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (29 bp):
TAATTTGTTAAAAAATATTTAATATTTAA
Found at i:75005110 original size:34 final size:29
Alignment explanation
Indices: 75005039--75005097 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
75005029 TATTTAAGTA
*
75005039 TAAT-TTTTTTAATTTGTTAAGAAATATT
1 TAATATTTTTTAATTTGTTAAAAAATATT
75005067 TAATATTTTTTAATTTGTTAAAAAATATT
1 TAATATTTTTTAATTTGTTAAAAAATATT
75005096 TA
1 TA
75005098 TTTTAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (29 bp):
TAATATTTTTTAATTTGTTAAAAAATATT
Found at i:75010238 original size:14 final size:14
Alignment explanation
Indices: 75010219--75010246 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75010209 TAACTACTAA
75010219 CCGATTAATCGAAT
1 CCGATTAATCGAAT
75010233 CCGATTAATCGAAT
1 CCGATTAATCGAAT
75010247 TAAATTCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
CCGATTAATCGAAT
Found at i:75017221 original size:26 final size:26
Alignment explanation
Indices: 75017169--75017234 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
75017159 TCTTTCTCTT
75017169 TTTC-TTTTCTCATTTTTTCTCTCCTA
1 TTTCATTTTCT-ATTTTTTCTCTCCTA
* * *
75017195 -TTCGTTTTCTATTTTGTTCTTTTCTA
1 TTTCATTTTCTATTTT-TTCTCTCCTA
75017221 TTTCATTTTCTATT
1 TTTCATTTTCTATT
75017235 CTCATTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 8 0.24
26 14 0.41
27 12 0.35
ACGTcount: A:0.09, C:0.20, G:0.03, T:0.68
Consensus pattern (26 bp):
TTTCATTTTCTATTTTTTCTCTCCTA
Found at i:75017234 original size:27 final size:25
Alignment explanation
Indices: 75017156--75017234 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 25
75017146 TTTCTCCTTC
*
75017156 TTTTCTTTCTCTTTTTCTTTTCTCATT
1 TTTTCTTT-TCTATTTCTTTTCT-ATT
* *
75017183 TTTTCTCTCCTA-TTCGTTTTCTATT
1 TTTTCTTTTCTATTTC-TTTTCTATT
75017208 TTGTTCTTTTCTATTTCATTTTCTATT
1 TT-TTCTTTTCTATTTC-TTTTCTATT
75017235 CTCATTTCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
25 8 0.19
26 16 0.37
27 19 0.44
ACGTcount: A:0.08, C:0.20, G:0.03, T:0.70
Consensus pattern (25 bp):
TTTTCTTTTCTATTTCTTTTCTATT
Found at i:75019471 original size:194 final size:194
Alignment explanation
Indices: 75019142--75019524 Score: 568
Period size: 194 Copynumber: 2.0 Consensus size: 194
75019132 CGATTTATCA
* * * * *
75019142 AAATTGATTTGAAGTCCTGAGAAAGAGAAGACATTTAGAAGAAATGATTTAAGAGACTTGCATAC
1 AAATTGATTTGAAGTCCTGAGAAAGAGAAAAAAGTTAGAAGAAATGATTTAAGAGACCTACATAC
* * *
75019207 TTAAACAAAAGCATTAAAGAAAATGTAGTAACCATAAACAAAAAGTAGGTGATTAATGGGTGGAG
66 TTAAACAAAAACATTAAAGAAAATGTAGCAACCATAAACAAAAAGTAGGTGATTAATGGGAGGAG
* * * * *
75019272 CATTTCTCGAGATTTTAATGCCTTGTATGGAACCATTATGATTTGCCGCCAATTGTAGTGATTG
131 CATTTCTCGAGATTTTAATACATTATATAGAACCATTATGATCTGCCGCCAATTGTAGTGATTG
* * * *
75019336 AAATTGATTTGAAGTCTTGTGAGAGAGAAAAAAGTTAGAAGAAATGATTTAAGAGACCTACATGC
1 AAATTGATTTGAAGTCCTGAGAAAGAGAAAAAAGTTAGAAGAAATGATTTAAGAGACCTACATAC
* * *
75019401 TTCAACAAAAATATTAAAGAAAATGTAGCAACCATAAACAAAAAGTAGGTGATTAATGTGAGGAG
66 TTAAACAAAAACATTAAAGAAAATGTAGCAACCATAAACAAAAAGTAGGTGATTAATGGGAGGAG
* *
75019466 CATTTCTCGAGATTTTAATATATTATATAGAACTATTATGATCTGCCGCCAATTGTAGT
131 CATTTCTCGAGATTTTAATACATTATATAGAACCATTATGATCTGCCGCCAATTGTAGT
75019525 AATAGTTTAG
Statistics
Matches: 167, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
194 167 1.00
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (194 bp):
AAATTGATTTGAAGTCCTGAGAAAGAGAAAAAAGTTAGAAGAAATGATTTAAGAGACCTACATAC
TTAAACAAAAACATTAAAGAAAATGTAGCAACCATAAACAAAAAGTAGGTGATTAATGGGAGGAG
CATTTCTCGAGATTTTAATACATTATATAGAACCATTATGATCTGCCGCCAATTGTAGTGATTG
Found at i:75024528 original size:18 final size:21
Alignment explanation
Indices: 75024491--75024534 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
75024481 ATATTTTTAA
*
75024491 ATTTTAGAATTTCTATAAA-T
1 ATTTTAGAATTTCTAAAAATT
75024511 ATTTT-GAATTT-TAAAAATT
1 ATTTTAGAATTTCTAAAAATT
75024530 ATTTT
1 ATTTT
75024535 CAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 12 0.55
20 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (21 bp):
ATTTTAGAATTTCTAAAAATT
Found at i:75029063 original size:3 final size:3
Alignment explanation
Indices: 75029055--75029086 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
75029045 GAAAATAATG
*
75029055 CTT CTT CTT CTT CTT CTT CTT CTT CTT TTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
75029087 CTTTAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:75037118 original size:28 final size:28
Alignment explanation
Indices: 75037059--75037121 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
75037049 GGATTTTTTT
*
75037059 TAATAATATGATGATTAGAAGTATAATC
1 TAATAATATGATGATTAGAAGAATAATC
* * *
75037087 TAATAA-ATGAGTTATTAGAAGAATCATG
1 TAATAATATGA-TGATTAGAAGAATAATC
75037115 TAATAAT
1 TAATAAT
75037122 GAAGGAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.35
Consensus pattern (28 bp):
TAATAATATGATGATTAGAAGAATAATC
Found at i:75043980 original size:28 final size:28
Alignment explanation
Indices: 75043940--75043995 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
75043930 CAACTGGACG
75043940 TACTTTCTTGCCAATTGTGCAGAAAGCT
1 TACTTTCTTGCCAATTGTGCAGAAAGCT
75043968 TACTTTCTTGCCAATTGTGCAGAAAGCT
1 TACTTTCTTGCCAATTGTGCAGAAAGCT
75043996 CACCTAGCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (28 bp):
TACTTTCTTGCCAATTGTGCAGAAAGCT
Found at i:75047819 original size:11 final size:11
Alignment explanation
Indices: 75047803--75047838 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
75047793 AGGTTTGGGT
*
75047803 AGGTATGGGAA
1 AGGTATGGGCA
75047814 AGGTATGGGCA
1 AGGTATGGGCA
75047825 AGGTATGGGCA
1 AGGTATGGGCA
75047836 AGG
1 AGG
75047839 AATGAGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.47, T:0.17
Consensus pattern (11 bp):
AGGTATGGGCA
Found at i:75051914 original size:18 final size:18
Alignment explanation
Indices: 75051891--75051965 Score: 87
Period size: 18 Copynumber: 4.2 Consensus size: 18
75051881 CTCAACTACT
*
75051891 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* **
75051909 GTATACCTGAATAGTGTC
1 GTATACGTGAATAGTACC
*
75051927 GTATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
* *
75051945 ATATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
75051963 GTA
1 GTA
75051966 AATGGTCGTA
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:75051943 original size:36 final size:36
Alignment explanation
Indices: 75051891--75051965 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
75051881 CTCAACTACT
* * *
75051891 GTATACGTGAACAGTACCGTATACCTGAATAGTGTC
1 GTATACGTAAACAGTACCATATACCTGAATAGTGCC
* *
75051927 GTATACGTAAATAGTACCATATACGTGAATAGTGCC
1 GTATACGTAAACAGTACCATATACCTGAATAGTGCC
75051963 GTA
1 GTA
75051966 AATGGTCGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (36 bp):
GTATACGTAAACAGTACCATATACCTGAATAGTGCC
Found at i:75056052 original size:108 final size:108
Alignment explanation
Indices: 75055891--75056135 Score: 341
Period size: 108 Copynumber: 2.3 Consensus size: 108
75055881 CCTTTAAATA
* * * * *
75055891 GCCGGCACCACACTGTAAAAAAAAAA-ATTGGTGCTGGCCTGTAGATGGCCGACACTATTACAAT
1 GCCGGCACCAGACT-TAAAAAAAAAATTTTGGTGCTGGCCTGTAAATGGCCGACACCAGTACAAT
*
75055955 TTTCGTGTCCCTATGCAAAATTTTTTAATTTT-GCCTTCTAATG
65 TTTCGTGTCCCGATGCAAAATTTTTTAATTTTGGCCTTCTAATG
* * **
75055998 GCCGACACCAGACTTAAAAAAAAAATTTTGGGTGCTGGTCTGTAAATGGCCGACACCAGTACTTT
1 GCCGGCACCAGACTTAAAAAAAAAATTTT-GGTGCTGGCCTGTAAATGGCCGACACCAGTACAAT
* *
75056063 TTTCGTGTCCCGATGCAAATTTTTTTACTTTTGGCCTTCTAATG
65 TTTCGTGTCCCGATGCAAAATTTTTTAATTTTGGCCTTCTAATG
75056107 GCCGGCACCAGACTTCAAAAAAAAAATTT
1 GCCGGCACCAGACTT-AAAAAAAAAATTT
75056136 AGTTCTGGCC
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
106 11 0.09
107 14 0.12
108 58 0.48
109 25 0.21
110 13 0.11
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (108 bp):
GCCGGCACCAGACTTAAAAAAAAAATTTTGGTGCTGGCCTGTAAATGGCCGACACCAGTACAATT
TTCGTGTCCCGATGCAAAATTTTTTAATTTTGGCCTTCTAATG
Found at i:75056345 original size:169 final size:168
Alignment explanation
Indices: 75056013--75056346 Score: 404
Period size: 169 Copynumber: 2.0 Consensus size: 168
75056003 CACCAGACTT
* * *
75056013 AAAAAAAAAATTTTGGGTGCTGGTCTGTAAATGGCCGACACCAGTACTTTTTTCGTGTCCCGATG
1 AAAAAAAAAAATTTGGGTGCTGGCCTGTAAATGGCCGACACCAGTACTTTTTTCGTGTCCCCATG
* * * *
75056078 CAAATTTTTTTACTTTTGGCCTTCTAATGGCCGGCACCAGACTTCAAAAAAAAAATTTAGTTCTG
66 CAAATTTTTTTACTTTTGACCTTCTAATGGCCAGCACCAAACTTCAAAAAAAAAATTTAGTACTG
* * * * * *
75056143 GCCTTTGAATGACTGGCACTACACTATAAAAAAAATAA
131 ACCTGTGAATGACCGACACCACACTAAAAAAAAAATAA
* * * * *
75056181 AAAAATAAAAAATTTGGGTGCTGGCCTGTAGATGGTCGGCACTAGTACTTTTTTTGTGTCCCCAT
1 AAAAA-AAAAAATTTGGGTGCTGGCCTGTAAATGGCCGACACCAGTACTTTTTTCGTGTCCCCAT
* *
75056246 GCAAATTTTTTTACTTTTGACCTTCTAATGGCCAGCACCAAACTT-TAAAAAAAAA-TTGGTACT
65 GCAAATTTTTTTACTTTTGACCTTCTAATGGCCAGCACCAAACTTCAAAAAAAAAATTTAGTACT
* * * *
75056309 GACCTGT-ACATGGCCGATACCAGAGTGAAAAAAAAAAT
130 GACCTGTGA-ATGACCGACACCACACT-AAAAAAAAAAT
75056347 TAGGGCTGGC
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
166 1 0.01
167 21 0.15
168 24 0.17
169 93 0.67
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (168 bp):
AAAAAAAAAAATTTGGGTGCTGGCCTGTAAATGGCCGACACCAGTACTTTTTTCGTGTCCCCATG
CAAATTTTTTTACTTTTGACCTTCTAATGGCCAGCACCAAACTTCAAAAAAAAAATTTAGTACTG
ACCTGTGAATGACCGACACCACACTAAAAAAAAAATAA
Found at i:75059610 original size:20 final size:21
Alignment explanation
Indices: 75059569--75059674 Score: 88
Period size: 21 Copynumber: 4.8 Consensus size: 21
75059559 TACACACTTG
*
75059569 ATTAGATGAAATGAAAAAAAA
1 ATTAAATGAAATGAAAAAAAA
*
75059590 ATTAAATGAAAT-AAGAAAAA
1 ATTAAATGAAATGAAAAAAAA
*
75059610 ATTAAATTAAAATGAAAAGAAAGATA
1 ATTAAA-TGAAATG-AAA-AAA-A-A
**
75059636 ATTTAAATGAAATGAAATGTAAA
1 A-TTAAATGAAATGAAA-AAAAA
*
75059659 TTTAAATGAAATGAAA
1 ATTAAATGAAATGAAA
75059675 TGTAATTTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
20 13 0.19
21 16 0.23
22 15 0.22
23 3 0.04
24 4 0.06
25 5 0.07
26 8 0.12
27 5 0.07
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (21 bp):
ATTAAATGAAATGAAAAAAAA
Found at i:75059638 original size:26 final size:24
Alignment explanation
Indices: 75059588--75059674 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 24
75059578 AATGAAAAAA
75059588 AAATTAAATGAAATAAGAAAAAA-TT
1 AAATTAAATG-AA-AAGAAAAAATTT
75059613 AAATTAAAATGAAAAGAAAGATAATTT
1 AAATT-AAATGAAAAGAAA-A-AATTT
* * *
75059640 AAATGAAATGAAATG--TAAATTT
1 AAATTAAATGAAAAGAAAAAATTT
*
75059662 AAATGAAATGAAA
1 AAATTAAATGAAA
75059675 TGTAATTTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
22 18 0.33
23 1 0.02
24 6 0.11
25 8 0.15
26 16 0.29
27 6 0.11
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.25
Consensus pattern (24 bp):
AAATTAAATGAAAAGAAAAAATTT
Found at i:75059648 original size:5 final size:5
Alignment explanation
Indices: 75059640--75059725 Score: 64
Period size: 5 Copynumber: 15.8 Consensus size: 5
75059630 AAGATAATTT
* * *
75059640 AAATG AAATG AAATG TAAATTT AAATG AAATG AAATG TAATTT ATAATG
1 AAATG AAATG AAATG -AAA-TG AAATG AAATG AAATG -AAATG A-AATG
* *
75059689 AATATG AAATG AAATGG AAATTT AAATT AAATG AAAT
1 AA-ATG AAATG AAAT-G AAA-TG AAATG AAATG AAAT
75059726 TGAGATTGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
5 40 0.61
6 24 0.36
7 2 0.03
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (5 bp):
AAATG
Found at i:75059701 original size:28 final size:27
Alignment explanation
Indices: 75059640--75059752 Score: 94
Period size: 28 Copynumber: 4.3 Consensus size: 27
75059630 AAGATAATTT
*
75059640 AAATGAAATGAAATGTAAATTTAAATG
1 AAATGAAATGAAATGGAAATTTAAATG
75059667 AAATGAAATG---T---AATTTATAATG
1 AAATGAAATGAAATGGAAATTTA-AATG
*
75059689 AATATGAAATGAAATGGAAATTTAAATT
1 AA-ATGAAATGAAATGGAAATTTAAATG
* * ** *
75059717 AAATGAAATTGAGATTGAAATTGGAATT
1 AAATGAAA-TGAAATGGAAATTTAAATG
75059745 AAATGAAA
1 AAATGAAA
75059753 AAAAAAGTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
21 6 0.08
22 6 0.08
23 8 0.11
24 1 0.01
26 1 0.01
27 16 0.22
28 28 0.39
29 6 0.08
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (27 bp):
AAATGAAATGAAATGGAAATTTAAATG
Found at i:75059725 original size:22 final size:22
Alignment explanation
Indices: 75059608--75059703 Score: 112
Period size: 22 Copynumber: 4.5 Consensus size: 22
75059598 AAATAAGAAA
* *
75059608 AAAT-TAAATTAAAATGAAAAG
1 AAATGTAAATTTAAATGAAATG
75059629 AAA-G-ATAATTTAAATGAAATG
1 AAATGTA-AATTTAAATGAAATG
75059650 AAATGTAAATTTAAATGAAATG
1 AAATGTAAATTTAAATGAAATG
75059672 AAATGT-AATTTATAATGAATATG
1 AAATGTAAATTTA-AATGAA-ATG
75059695 AAATG-AAAT
1 AAATGTAAAT
75059704 GGAAATTTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
20 1 0.02
21 25 0.38
22 28 0.42
23 12 0.18
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (22 bp):
AAATGTAAATTTAAATGAAATG
Found at i:75059738 original size:22 final size:22
Alignment explanation
Indices: 75059635--75059737 Score: 50
Period size: 22 Copynumber: 4.6 Consensus size: 22
75059625 AAAGAAAGAT
* * *
75059635 AATTTAAATGAAATGAAATGTA
1 AATTGAAATTAAATGAAATGGA
* * *
75059657 AATTTAAATGAAATGAAAT-GT
1 AATTGAAATTAAATGAAATGGA
* *
75059678 AATTTATAATGAATATGAAAT-GA
1 AATTGA-AATTAA-ATGAAATGGA
* *
75059701 AATGGAAATTTAAATTAAAT-GA
1 AATTGAAA-TTAAATGAAATGGA
*
75059723 AATTGAGATTGAAAT
1 AATTGAAATT-AAAT
75059738 TGGAATTAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
21 8 0.12
22 45 0.66
23 15 0.22
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (22 bp):
AATTGAAATTAAATGAAATGGA
Found at i:75062692 original size:27 final size:28
Alignment explanation
Indices: 75062635--75062698 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
75062625 TGTACACCAC
*
75062635 AAAAAACTCCCATATACAATCCAGTACA
1 AAAAAACTCCCATATACAATCCACTACA
* *
75062663 AAAAAACTTCCTTATACAATCCACTA-A
1 AAAAAACTCCCATATACAATCCACTACA
*
75062690 AAAGAACTC
1 AAAAAACTC
75062699 ATTTGATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
27 8 0.26
28 23 0.74
ACGTcount: A:0.50, C:0.27, G:0.03, T:0.20
Consensus pattern (28 bp):
AAAAAACTCCCATATACAATCCACTACA
Found at i:75063213 original size:46 final size:46
Alignment explanation
Indices: 75063148--75063284 Score: 143
Period size: 47 Copynumber: 2.9 Consensus size: 46
75063138 AGCCAGCACC
* *
75063148 CAATTTTTGTTTTTTACAGTGTGGTGCTGACCATTCA-AAGGCCAGAA
1 CAATTTTT-TTTTTTACAGTCTGATGCTGACCATT-ATAAGGCCAGAA
* * *
75063195 CCATTTTTTTTTTTACAGTCTGATGTTGGCCATTATAAGGCCAGAA
1 CAATTTTTTTTTTTACAGTCTGATGCTGACCATTATAAGGCCAGAA
* * * *
75063241 CAATTTTTTTTCTTTTA-AGTCTGGTGCCGGCCATTAGAAGGCCA
1 CAA-TTTTTTT-TTTTACAGTCTGATGCTGACCATTATAAGGCCA
75063285 AAATTAAAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
45 1 0.01
46 34 0.44
47 37 0.48
48 5 0.06
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (46 bp):
CAATTTTTTTTTTTACAGTCTGATGCTGACCATTATAAGGCCAGAA
Found at i:75063273 original size:47 final size:46
Alignment explanation
Indices: 75063148--75063284 Score: 161
Period size: 46 Copynumber: 2.9 Consensus size: 46
75063138 AGCCAGCACC
* * *
75063148 CAATTTTTGTTTTTTACAGTGTGGTGCTGACCATTCAAAGGCCAGAA
1 CAATTTTTTTTTTTTACAGTCTGGTGCTGGCCATT-AAAGGCCAGAA
* * *
75063195 CCA-TTTTTTTTTTTACAGTCTGATGTTGGCCATTATAAGGCCAGAA
1 CAATTTTTTTTTTTTACAGTCTGGTGCTGGCCATTA-AAGGCCAGAA
*
75063241 CAATTTTTTTTCTTTTA-AGTCTGGTGCCGGCCATTAGAAGGCCA
1 CAATTTTTTTT-TTTTACAGTCTGGTGCTGGCCATTA-AAGGCCA
75063285 AAATTAAAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 38 0.50
47 32 0.42
48 5 0.07
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (46 bp):
CAATTTTTTTTTTTTACAGTCTGGTGCTGGCCATTAAAGGCCAGAA
Found at i:75063405 original size:200 final size:197
Alignment explanation
Indices: 75062838--75063406 Score: 645
Period size: 203 Copynumber: 2.8 Consensus size: 197
75062828 GGCTAGTACC
* ** * * *
75062838 CAATTTTTTTTTTAAGTCTGGTGTCGGCTATTAGAACACTAAAAGTAAAAAAATTTACATCAGGA
1 CAATTTTTTTTTTAAGTCTGGTGTCGGCCATTAGAAGGCCAAAAGTAAAAAAATTTGCATCGGGA
* * * * * * * *
75062903 CATGAAAAAAGTACTAGCGTCGACTATCTACAGGCCAGCACCCAAATTTTTTTTAATAGTATGGT
66 CACGAAAAAAGTACTAGTGTCGGCCATCTACAAGCCAGCACCCAAATTTTTTTTTACAGTGTGGT
* * * * * * *
75062968 GCCGGTCATTTAAAGGCCAAAACCAAAAATATATATTTTTTATAGTCTGGTGCCGGCCTTTACAA
131 G-CGGCCATTCAAAGGCCAGAACC---AAT-T-TTTTTTTTACAGTCTGATGCCGGCCATTACAA
*
75063033 TGCCAAAA
190 GGCCAAAA
*
75063041 CAATTTTTTTTTTAAGTCTGATGTCGGCCATTAGAAGGCCAAAAGTAAAAAAATTTGCATCGGGA
1 CAATTTTTTTTTTAAGTCTGGTGTCGGCCATTAGAAGGCCAAAAGTAAAAAAATTTGCATCGGGA
* * *
75063106 CACGAAAAAAGTACTAGTGCCAGCCATCTACAAGCCAGCACCCAATTTTTGTTTTTTACAGTGTG
66 CACGAAAAAAGTACTAGTGTCGGCCATCTACAAGCCAGCACCCAA-ATTT-TTTTTTACAGTGTG
* * ** *
75063171 GTGCTGACCATTCAAAGGCCAGAACCATTTTTTTTTTTACAGTCTGATGTTGGCCATTATAAGGC
129 GTGC-GGCCATTCAAAGGCCAGAACCAATTTTTTTTTTACAGTCTGATGCCGGCCATTACAAGGC
*
75063236 CAGAA
193 CAAAA
* * *
75063241 CAATTTTTTTTCTTTTAAGTCTGGTGCCGGCCATTAGAAGGCCAAAATTAAAAAATTTTGCATCG
1 CAA--TTTTTT-TTTTAAGTCTGGTGTCGGCCATTAGAAGGCCAAAAGTAAAAAAATTTGCATCG
** * *
75063306 GGACACGAAAATTGTACTAGTGTCGGCCATCTACATGCCAACA-CCAAATTTTTTTTTACAGTGT
63 GGACACGAAAAAAGTACTAGTGTCGGCCATCTACAAGCCAGCACCCAAATTTTTTTTTACAGTGT
* *
75063370 GGTGACGGCCACTCAAAGGTCAGAACCAATTTTTTTT
128 GGTG-CGGCCATTCAAAGGCCAGAACCAATTTTTTTT
75063407 AAATACTGGT
Statistics
Matches: 312, Mismatches: 47, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
200 78 0.25
201 5 0.02
202 12 0.04
203 182 0.58
204 4 0.01
205 31 0.10
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (197 bp):
CAATTTTTTTTTTAAGTCTGGTGTCGGCCATTAGAAGGCCAAAAGTAAAAAAATTTGCATCGGGA
CACGAAAAAAGTACTAGTGTCGGCCATCTACAAGCCAGCACCCAAATTTTTTTTTACAGTGTGGT
GCGGCCATTCAAAGGCCAGAACCAATTTTTTTTTTACAGTCTGATGCCGGCCATTACAAGGCCAA
AA
Found at i:75064332 original size:5 final size:5
Alignment explanation
Indices: 75064322--75064349 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
75064312 CGTTTAATTA
75064322 AATCG AATCG AATCG AATCG AATCG AAT
1 AATCG AATCG AATCG AATCG AATCG AAT
75064350 AATATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (5 bp):
AATCG
Found at i:75064477 original size:18 final size:19
Alignment explanation
Indices: 75064441--75064479 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
75064431 CGAAATTGAA
*
75064441 TTCGAATTGAATATATTTG
1 TTCGAATTAAATATATTTG
75064460 TTCGAATTAAAT-TATTTG
1 TTCGAATTAAATATATTTG
75064478 TT
1 TT
75064480 TAGAAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
TTCGAATTAAATATATTTG
Found at i:75065047 original size:31 final size:31
Alignment explanation
Indices: 75065004--75065074 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
75064994 TTTTTCGCCC
* *
75065004 TTTTTT-CGTTTTTAATAAATGGCCCAATAT
1 TTTTTTACTTTTTTAATAAATGACCCAATAT
** *
75065034 TTTTTTACTTTTTTCGTAAATGACTCAATAT
1 TTTTTTACTTTTTTAATAAATGACCCAATAT
* *
75065065 GTTTATACTT
1 TTTTTTACTT
75065075 CTTCTTCTCC
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.25, C:0.13, G:0.08, T:0.54
Consensus pattern (31 bp):
TTTTTTACTTTTTTAATAAATGACCCAATAT
Found at i:75069977 original size:33 final size:32
Alignment explanation
Indices: 75069937--75070083 Score: 125
Period size: 33 Copynumber: 4.4 Consensus size: 32
75069927 CAGTGTTTAT
75069937 ATGTAAGACCATAGCTGAGCTATGGCATTCTG
1 ATGTAAGACCATAGCTGAGCTATGGCATTCTG
* * * * *
75069969 GTGATAAGACCATAACTGAGTTATGGCACTATG
1 ATG-TAAGACCATAGCTGAGCTATGGCATTCTG
* * * * * *
75070002 AACGTAAGACCATGGTTG-GACCATGGCAGTGTTTAT
1 -ATGTAAGACCATAGCTGAG-CTATGGCA-T-TCT-G
75070038 ATGTAAGACCATAGCTGAGCTATGGCATTCTG
1 ATGTAAGACCATAGCTGAGCTATGGCATTCTG
75070070 ATGATAAGACCATA
1 ATG-TAAGACCATA
75070084 ACTAGGTTAT
Statistics
Matches: 86, Mismatches: 21, Indels: 15
0.70 0.17 0.12
Matches are distributed among these distances:
32 6 0.07
33 54 0.63
34 2 0.02
35 23 0.27
36 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGAGCTATGGCATTCTG
Found at i:75069998 original size:101 final size:101
Alignment explanation
Indices: 75069870--75070110 Score: 412
Period size: 101 Copynumber: 2.4 Consensus size: 101
75069860 TGAATTGACG
* *
75069870 GATAAGACCATAATTGGGTTATGGCACTATGAATGTAAAACCATGGTTGGACCATGACAGTGTTT
1 GATAAGACCATAACTGAGTTATGGCACTATGAATGTAAAACCATGGTTGGACCATGACAGTGTTT
*
75069935 ATATGTAAGACCATAGCTGAGCTATGGCATTCTGGT
66 ATATGTAAGACCATAGCTGAGCTATGGCATTCTGAT
* * *
75069971 GATAAGACCATAACTGAGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGGCAGTGTTT
1 GATAAGACCATAACTGAGTTATGGCACTATGAATGTAAAACCATGGTTGGACCATGACAGTGTTT
75070036 ATATGTAAGACCATAGCTGAGCTATGGCATTCTGAT
66 ATATGTAAGACCATAGCTGAGCTATGGCATTCTGAT
75070072 GATAAGACCATAACT-AGGTTATGGCACTATGAATGTAAA
1 GATAAGACCATAACTGA-GTTATGGCACTATGAATGTAAA
75070111 GGATGAATTG
Statistics
Matches: 131, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
100 1 0.01
101 130 0.99
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (101 bp):
GATAAGACCATAACTGAGTTATGGCACTATGAATGTAAAACCATGGTTGGACCATGACAGTGTTT
ATATGTAAGACCATAGCTGAGCTATGGCATTCTGAT
Found at i:75070139 original size:24 final size:23
Alignment explanation
Indices: 75070103--75070171 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 23
75070093 TGGCACTATG
*
75070103 AATGTAAAGGATGAATTGACGGAA
1 AATGTAAA-GATGAATTGACAGAA
75070127 AATGTAAATGATGAATTGACAGAA
1 AATGTAAA-GATGAATTGACAGAA
75070151 AATGTAAAGAATGAATTGACA
1 AATGTAAAG-ATGAATTGACA
75070172 ACAAGTTACC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
23 1 0.02
24 41 0.98
ACGTcount: A:0.49, C:0.04, G:0.23, T:0.23
Consensus pattern (23 bp):
AATGTAAAGATGAATTGACAGAA
Found at i:75073657 original size:7 final size:7
Alignment explanation
Indices: 75073645--75073687 Score: 59
Period size: 7 Copynumber: 5.7 Consensus size: 7
75073635 CTAAATAATT
75073645 TAAAATA
1 TAAAATA
75073652 TAAAATATA
1 T-AAA-ATA
75073661 TAAATATA
1 TAAA-ATA
75073669 TAAAATA
1 TAAAATA
75073676 TAAAATA
1 TAAAATA
75073683 TAAAA
1 TAAAA
75073688 GATTAATTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 16 0.47
8 14 0.41
9 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
TAAAATA
Found at i:75073661 original size:9 final size:9
Alignment explanation
Indices: 75073649--75073677 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
75073639 ATAATTTAAA
75073649 ATATAAAAT
1 ATATAAAAT
75073658 ATAT-AAAT
1 ATATAAAAT
75073666 ATATAAAAT
1 ATATAAAAT
75073675 ATA
1 ATA
75073678 AAATATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
ATATAAAAT
Found at i:75073667 original size:15 final size:15
Alignment explanation
Indices: 75073645--75073687 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
75073635 CTAAATAATT
75073645 TAAAATAT-AAAATA
1 TAAAATATAAAAATA
75073659 TATAAATATATAAAATA
1 TA-AAATATA-AAAATA
75073676 TAAAATATAAAA
1 TAAAATATAAAA
75073688 GATTAATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 2 0.08
15 9 0.35
16 7 0.27
17 8 0.31
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAATATAAAAATA
Found at i:75073674 original size:24 final size:25
Alignment explanation
Indices: 75073636--75073684 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
75073626 GTCTCATTAC
*
75073636 TAAATAATTTAAAATATAAAATATA
1 TAAATAATATAAAATATAAAATATA
75073661 TAAAT-ATATAAAATATAAAATATA
1 TAAATAATATAAAATATAAAATATA
75073685 AAAGATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
TAAATAATATAAAATATAAAATATA
Found at i:75077950 original size:19 final size:19
Alignment explanation
Indices: 75077926--75077965 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
75077916 TTAAGTGAAA
75077926 GTTTTAATAACTCTGTGAC
1 GTTTTAATAACTCTGTGAC
* *
75077945 GTTTTAATAATTCTTTGAC
1 GTTTTAATAACTCTGTGAC
75077964 GT
1 GT
75077966 CGTTTTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.47
Consensus pattern (19 bp):
GTTTTAATAACTCTGTGAC
Found at i:75079195 original size:15 final size:15
Alignment explanation
Indices: 75079169--75079209 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
75079159 ATACTCAGTT
*
75079169 ATATTAATATATTTA
1 ATATTAAAATATTTA
*
75079184 ATTTTAAAATATTTA
1 ATATTAAAATATTTA
75079199 ATATTAAAATA
1 ATATTAAAATA
75079210 ATAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTAAAATATTTA
Found at i:75082724 original size:46 final size:46
Alignment explanation
Indices: 75082678--75082940 Score: 375
Period size: 46 Copynumber: 5.7 Consensus size: 46
75082668 GCTCCCTGAT
* * *
75082678 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
75082724 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
75082770 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
75082816 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
75082862 GGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
75082909 A-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATAC
75082941 TATGACATCA
Statistics
Matches: 199, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 157 0.79
47 42 0.21
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:75086700 original size:37 final size:37
Alignment explanation
Indices: 75086637--75086729 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
75086627 ATTTAGGCAT
* * *
75086637 TAAAATTAAAATTACATATAAGATATAAAATTAAA-A
1 TAAAATTAAAACTACATTTAAGATATAAAAGTAAAGA
* *
75086673 TAAAATTATAAACTACATTTAATATATAAAAGTAAAGG
1 TAAAATTA-AAACTACATTTAAGATATAAAAGTAAAGA
*
75086711 TAAAATTAAAACTATATTT
1 TAAAATTAAAACTACATTT
75086730 GAAATTAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
36 8 0.16
37 33 0.67
38 8 0.16
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (37 bp):
TAAAATTAAAACTACATTTAAGATATAAAAGTAAAGA
Found at i:75087268 original size:15 final size:15
Alignment explanation
Indices: 75087248--75087301 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
75087238 ATACTAAAAA
75087248 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
75087263 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
75087280 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
75087297 ATATT
1 ATATT
75087302 AGAGTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:75087360 original size:16 final size:16
Alignment explanation
Indices: 75087329--75087365 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
75087319 ATGTGAAGAA
75087329 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
75087345 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
75087361 TATTA
1 TATTA
75087366 AAATAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:75087491 original size:48 final size:49
Alignment explanation
Indices: 75087440--75087535 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 49
75087430 AATAATATTA
75087440 AAAATATAATAATTTATATTAATAT-TTTAAA-TAATTTTT-TA-AAAAAT
1 AAAA-ATAATAA-TTATATTAATATATTTAAATTAATTTTTATATAAAAAT
* *
75087487 AAAAATAATTATTATATTAATTTGATTTAAATTAATTTTTATATAAAAA
1 AAAAATAATAATTATATTAATAT-ATTTAAATTAATTTTTATATAAAAA
75087536 ATTAACTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
45 11 0.26
46 6 0.14
47 10 0.24
48 8 0.19
49 2 0.05
50 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (49 bp):
AAAAATAATAATTATATTAATATATTTAAATTAATTTTTATATAAAAAT
Found at i:75087777 original size:15 final size:16
Alignment explanation
Indices: 75087757--75087790 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
75087747 ATATATATAT
75087757 ATTATTTT-ATTTTTA
1 ATTATTTTAATTTTTA
75087772 ATTATTTTAAATTTTTA
1 ATTATTTT-AATTTTTA
75087789 AT
1 AT
75087791 ATAACCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTATTTTAATTTTTA
Done.