Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 230 of 253
Found at i:75087863 original size:21 final size:22
Alignment explanation
Indices: 75087837--75087895 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
75087827 GTTTTAAGAA
*
75087837 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
75087858 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
75087880 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
75087896 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:75087910 original size:26 final size:24
Alignment explanation
Indices: 75087866--75087915 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
75087856 ATTTGTTTTA
*
75087866 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
75087890 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
75087916 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:75092221 original size:6 final size:6
Alignment explanation
Indices: 75092210--75092235 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
75092200 TCAACACATC
75092210 ATAGCA ATAGCA ATAGCA ATAGCA AT
1 ATAGCA ATAGCA ATAGCA ATAGCA AT
75092236 CCAACATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (6 bp):
ATAGCA
Found at i:75092394 original size:24 final size:22
Alignment explanation
Indices: 75092364--75092444 Score: 74
Period size: 25 Copynumber: 3.5 Consensus size: 22
75092354 AAATATACAA
75092364 ATAAAATATCTTAAATATTTTATT
1 ATAAAATAT-TTAAATATTTTA-T
* *
75092388 ATAAAATA-TGAAATTAATTTAT
1 ATAAAATATTTAAA-TATTTTAT
*
75092410 ATAAAATATGTTAATAATATTTAAT
1 ATAAAATAT-TT-A-AATATTTTAT
75092435 ATAAAATATT
1 ATAAAATATT
75092445 ATTTTCAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
22 13 0.28
23 6 0.13
24 10 0.21
25 16 0.34
26 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (22 bp):
ATAAAATATTTAAATATTTTAT
Found at i:75092538 original size:23 final size:23
Alignment explanation
Indices: 75092486--75092547 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
75092476 TATCTTAGCA
*
75092486 TAATTTATTATAAAATATTAAAT
1 TAATTTAGTATAAAATATTAAAT
75092509 TAATTTA-TATAAAATATGTTAAA-
1 TAATTTAGTATAAAATA--TTAAAT
*
75092532 TAGTTTAGTATCAAAA
1 TAATTTAGTAT-AAAA
75092548 ACAAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
22 9 0.26
23 13 0.38
24 8 0.24
25 4 0.12
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.44
Consensus pattern (23 bp):
TAATTTAGTATAAAATATTAAAT
Found at i:75093097 original size:14 final size:14
Alignment explanation
Indices: 75093067--75093096 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
75093057 TTCCTTTAAA
75093067 TTTCCTCTGTATTT
1 TTTCCTCTGTATTT
75093081 TTTCCTCTGT-TTT
1 TTTCCTCTGTATTT
75093094 TTT
1 TTT
75093097 TTTGTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.03, C:0.20, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTCCTCTGTATTT
Found at i:75093199 original size:17 final size:18
Alignment explanation
Indices: 75093160--75093199 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
75093150 TTTACTTCAT
75093160 ATTGTTAATAAAATCTGG
1 ATTGTTAATAAAATCTGG
75093178 A-TGTTAATAAAATC-GG
1 ATTGTTAATAAAATCTGG
75093194 ATTGTT
1 ATTGTT
75093200 TTCCTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 17 0.81
18 1 0.05
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (18 bp):
ATTGTTAATAAAATCTGG
Found at i:75101034 original size:5 final size:5
Alignment explanation
Indices: 75101024--75101077 Score: 54
Period size: 5 Copynumber: 10.2 Consensus size: 5
75101014 ATAGAAGATA
* * *
75101024 TTATT TTATT TTGTT TTATT TTGTT ATATTAT TTATTT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTA-T-T TTA-TT TTATT TTATT
75101072 TTATT T
1 TTATT T
75101078 AGGATTAAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 31 0.76
6 5 0.12
7 5 0.12
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:75101076 original size:23 final size:23
Alignment explanation
Indices: 75101022--75101076 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
75101012 AAATAGAAGA
*
75101022 TATTATTTTATTTTGTTTTATTT
1 TATTATATTATTTTGTTTTATTT
*
75101045 TGTTATATTATTTAT-TTTTATTT
1 TATTATATTATTT-TGTTTTATTT
*
75101068 TATTTTATT
1 TATTATATT
75101077 TAGGATTAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (23 bp):
TATTATATTATTTTGTTTTATTT
Found at i:75103088 original size:55 final size:55
Alignment explanation
Indices: 75102983--75103090 Score: 126
Period size: 55 Copynumber: 2.0 Consensus size: 55
75102973 CAATCCTGCC
* * **** *
75102983 AAATCAACACGGGCATGCGACACGCCCGTGTCTAAAAGTTTTGGTGGAAACTGAG
1 AAATCAACACGGGCATGCGACACGCCCGTGCCCAAAACCCATGGTCGAAACTGAG
* **
75103038 AAATCAACACGGGCCTGCGACACGCCCGTGCCCACCACCCATGGTCGAAACTG
1 AAATCAACACGGGCATGCGACACGCCCGTGCCCAAAACCCATGGTCGAAACTG
75103091 TAAAAATAAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.29, C:0.31, G:0.25, T:0.16
Consensus pattern (55 bp):
AAATCAACACGGGCATGCGACACGCCCGTGCCCAAAACCCATGGTCGAAACTGAG
Found at i:75106911 original size:20 final size:21
Alignment explanation
Indices: 75106869--75106909 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
75106859 TTATTATGTA
75106869 TATTATTTTTACTCATTTCTT
1 TATTATTTTTACTCATTTCTT
*
75106890 TATT-TTTTTATTCA-TTCTT
1 TATTATTTTTACTCATTTCTT
75106909 T
1 T
75106910 TAAATACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 9 0.47
21 4 0.21
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTATTTTTACTCATTTCTT
Found at i:75118594 original size:7 final size:7
Alignment explanation
Indices: 75118574--75118609 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
75118564 AGGGCATCTA
75118574 AAAAAATG
1 AAAAAA-G
75118582 AAAAAAG
1 AAAAAAG
*
75118589 AGAAAAG
1 AAAAAAG
75118596 AAAAAAG
1 AAAAAAG
75118603 AAAAAAG
1 AAAAAAG
75118610 GGGATCAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:75119551 original size:73 final size:73
Alignment explanation
Indices: 75119460--75119729 Score: 346
Period size: 73 Copynumber: 3.7 Consensus size: 73
75119450 TGATGTTTTT
* * * * * *
75119460 ATTTCTGTTTTTAAAAAATCAACTCGTATTGCAAGAGGTGAGCTGAGCGTCAAGGCACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
75119525 TATTTTCA
66 TATTTTCA
*
75119533 ATTTTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
75119598 TATTTTCA
66 TATTTTCA
**
75119606 ATTTCTACTTTTCAAAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCT
1 ATTTCTGTTTTTC--AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CACGCT
*
75119670 GAGGTCA-TTTCG
62 GAGGT-ATTTTCA
* ** **
75119682 ATTTTTGTTTGCCAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGC
1 ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
75119730 ATTTTAATTT
Statistics
Matches: 174, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
73 104 0.60
74 5 0.03
75 8 0.05
76 56 0.32
77 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (73 bp):
ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
TATTTTCA
Found at i:75119830 original size:53 final size:53
Alignment explanation
Indices: 75119703--75119861 Score: 273
Period size: 53 Copynumber: 3.0 Consensus size: 53
75119693 CCAAAAATTG
*
75119703 ACTCATATTGCGAGAGGTGAGTTGAGCATTTTAATTTCTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTC-AAAATCA
*
75119757 ACTAATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAATCA
* *
75119810 ACTCATATTGCGAGAGGTGAGTTGAGCCCTTTAATTTTTGTTTTTCAAAATC
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAATC
75119862 TACTTTTCAA
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 56 0.56
54 44 0.44
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (53 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAATCA
Found at i:75122108 original size:21 final size:21
Alignment explanation
Indices: 75122067--75122111 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
75122057 ACTATTATTA
*
75122067 TTTTATTATATATATAGATAT
1 TTTTAGTATATATATAGATAT
*
75122088 TTTTAGTATTTATCATA-ATAT
1 TTTTAGTATATAT-ATAGATAT
75122109 TTT
1 TTT
75122112 CTTATTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTAGTATATATATAGATAT
Found at i:75122173 original size:20 final size:21
Alignment explanation
Indices: 75122131--75122171 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
75122121 TTATTATGTA
75122131 TATTATTTTTACTCATTTCTT
1 TATTATTTTTACTCATTTCTT
*
75122152 TATT-TTTTTATTCA-TTCTT
1 TATTATTTTTACTCATTTCTT
75122171 T
1 T
75122172 TAAATACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 9 0.47
21 4 0.21
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTATTTTTACTCATTTCTT
Found at i:75127860 original size:23 final size:21
Alignment explanation
Indices: 75127804--75127864 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
75127794 ATCAGTATAC
75127804 GACACATAAGTGCCTG-AAAT
1 GACACATAAGTGCCTGAAAAT
* *
75127824 GACACACGAGGTGCCTGAAATAT
1 GACACA-TAAGTGCCTGAAA-AT
75127847 GACACATAAAGTGCCTGA
1 GACACAT-AAGTGCCTGA
75127865 TCGGCAAAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 6 0.18
21 8 0.24
22 2 0.06
23 17 0.52
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (21 bp):
GACACATAAGTGCCTGAAAAT
Found at i:75131865 original size:15 final size:16
Alignment explanation
Indices: 75131830--75131873 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
75131820 CTTTTTACTT
* *
75131830 TATTTAATTTATATTA
1 TATTTAATTAATATAA
75131846 TATTTAATTAATA-AA
1 TATTTAATTAATATAA
*
75131861 TATTTATTTAATA
1 TATTTAATTAATA
75131874 GAAAATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTTAATTAATATAA
Found at i:75132574 original size:17 final size:18
Alignment explanation
Indices: 75132534--75132575 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
75132524 TTTAAATGAG
75132534 GGATTGTTAATAAAATCT
1 GGATTGTTAATAAAATCT
75132552 GG-TTGTTAATAAAATC-
1 GGATTGTTAATAAAATCT
75132568 GGATTGTT
1 GGATTGTT
75132576 TTTCTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (18 bp):
GGATTGTTAATAAAATCT
Found at i:75135439 original size:45 final size:45
Alignment explanation
Indices: 75135360--75135445 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
75135350 ACGTTAATAC
* * *
75135360 GTATTTAGTACATTGTTGAAAAATAGTATGTTGTTAAATTATTAT
1 GTATTTAATACATTGTTGAAAAATAGAATATTGTTAAATTATTAT
* * *
75135405 GTATTTAATATATTGTTGAGAAATGGAATATTGTTAAATTA
1 GTATTTAATACATTGTTGAAAAATAGAATATTGTTAAATTA
75135446 AGAATTGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.37, C:0.01, G:0.16, T:0.45
Consensus pattern (45 bp):
GTATTTAATACATTGTTGAAAAATAGAATATTGTTAAATTATTAT
Found at i:75136361 original size:37 final size:37
Alignment explanation
Indices: 75136320--75136400 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
75136310 CTGAAATATT
**
75136320 TGGAAATGATATATACTTGATATATTGAAACGTGACA
1 TGGAAATGATATATACTTGATATATTGAAAAATGACA
* *
75136357 TGGAAATGCTATTTACTTGATATATTGAAAAATGACA
1 TGGAAATGATATATACTTGATATATTGAAAAATGACA
*
75136394 TGTAAAT
1 TGGAAAT
75136401 ATGTGATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (37 bp):
TGGAAATGATATATACTTGATATATTGAAAAATGACA
Found at i:75138852 original size:24 final size:26
Alignment explanation
Indices: 75138822--75138872 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
75138812 CTGGGTATTC
*
75138822 TATATGT-TCATTT-ATTCTCAGAGG
1 TATATGTAACATTTCATTCTCAGAGG
*
75138846 TATATGTAACATTTCATTTTCAGAGG
1 TATATGTAACATTTCATTCTCAGAGG
75138872 T
1 T
75138873 GATTCTTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 5 0.22
26 11 0.48
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (26 bp):
TATATGTAACATTTCATTCTCAGAGG
Found at i:75140864 original size:2 final size:2
Alignment explanation
Indices: 75140817--75140850 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
75140807 TTCTCTTTCC
75140817 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75140851 TTTACATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75141414 original size:18 final size:18
Alignment explanation
Indices: 75141388--75141426 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
75141378 TTCATTATAC
75141388 AATTCGAATAACTT-GAAT
1 AATTCGAATAA-TTCGAAT
*
75141406 AATTTGAATAATTCGAAT
1 AATTCGAATAATTCGAAT
75141424 AAT
1 AAT
75141427 AGATTGGAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (18 bp):
AATTCGAATAATTCGAAT
Found at i:75143078 original size:6 final size:6
Alignment explanation
Indices: 75143067--75143091 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75143057 TACCAATTTG
75143067 ATTCTA ATTCTA ATTCTA ATTCTA A
1 ATTCTA ATTCTA ATTCTA ATTCTA A
75143092 GTAATTCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
ATTCTA
Found at i:75144400 original size:22 final size:22
Alignment explanation
Indices: 75144352--75144402 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
75144342 TTTAATACAC
* *
75144352 TATTAATTTATATTATTATGAAT
1 TATT-ATTTATATTATTATAAAA
75144375 TATTATTTATATTAATT-TAAAA
1 TATTATTTATATT-ATTATAAAA
75144397 TATTAT
1 TATTAT
75144403 ATCTTGGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTATTTATATTATTATAAAA
Found at i:75145002 original size:22 final size:20
Alignment explanation
Indices: 75144984--75145020 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
75144974 CCATTGTCAC
75144984 CCACCGTAAT-AAAATTTGT
1 CCACCGTAATCAAAATTTGT
75145003 CCACCGTAATCAAAATTT
1 CCACCGTAATCAAAATTT
75145021 TTATTAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (20 bp):
CCACCGTAATCAAAATTTGT
Found at i:75146255 original size:3 final size:3
Alignment explanation
Indices: 75146247--75146302 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
75146237 TAGAGTAAAG
* *
75146247 ATA ATA ATA ATA ATA ATA ATA GTA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
75146295 ATA ATA AT
1 ATA ATA AT
75146303 TCAGATCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:75146759 original size:19 final size:20
Alignment explanation
Indices: 75146723--75146760 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75146713 ATACAAATTC
75146723 ACTTCATATAAAACAAAAAA
1 ACTTCATATAAAACAAAAAA
75146743 ACTT-ATATATAAA-AAAAA
1 ACTTCATATA-AAACAAAAA
75146761 TGTATACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.24
Consensus pattern (20 bp):
ACTTCATATAAAACAAAAAA
Found at i:75155363 original size:27 final size:27
Alignment explanation
Indices: 75155325--75155379 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
75155315 GCAGCAATTA
75155325 GGCTTATTCCTACTGTATATAAATCGT
1 GGCTTATTCCTACTGTATATAAATCGT
*
75155352 GGCTTATTCCTACTGTATGTAAATCGT
1 GGCTTATTCCTACTGTATATAAATCGT
75155379 G
1 G
75155380 TATGTATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (27 bp):
GGCTTATTCCTACTGTATATAAATCGT
Found at i:75158447 original size:15 final size:15
Alignment explanation
Indices: 75158429--75158459 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75158419 GAAAAGTATG
75158429 TTTCATTCATTGGCC
1 TTTCATTCATTGGCC
75158444 TTTCATTCATTGGCC
1 TTTCATTCATTGGCC
75158459 T
1 T
75158460 ACCTCTCAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (15 bp):
TTTCATTCATTGGCC
Found at i:75162788 original size:31 final size:26
Alignment explanation
Indices: 75162753--75162835 Score: 89
Period size: 31 Copynumber: 3.0 Consensus size: 26
75162743 GGAGATTACG
75162753 TACCAAATTAGAAAAAAAAATCAACTTTAAA
1 TACCAAATTAGAAAAAAAAAT---C--TAAA
*
75162784 TACCAAATTAGACAAAAAAATCTAAA
1 TACCAAATTAGAAAAAAAAATCTAAA
75162810 TACCAAATTA-AAAAAAAATAT-TAAA
1 TACCAAATTAGAAAAAAAA-ATCTAAA
75162835 T
1 T
75162836 TTAGATATCA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
25 12 0.24
26 16 0.33
28 1 0.02
31 20 0.41
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.23
Consensus pattern (26 bp):
TACCAAATTAGAAAAAAAAATCTAAA
Found at i:75164704 original size:15 final size:16
Alignment explanation
Indices: 75164679--75164711 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75164669 ATATTTTAAA
*
75164679 AATATTCCACAAGGGG
1 AATATTCCACAAGAGG
75164695 AATA-TCCACAAGAGG
1 AATATTCCACAAGAGG
75164710 AA
1 AA
75164712 GTACCAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.15
Consensus pattern (16 bp):
AATATTCCACAAGAGG
Found at i:75167632 original size:17 final size:18
Alignment explanation
Indices: 75167610--75167643 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
75167600 TATATAATTA
75167610 AAAATT-AAAAAATAGAT
1 AAAATTAAAAAAATAGAT
75167627 AAAATTAAAAAAATAGA
1 AAAATTAAAAAAATAGA
75167644 AATTTCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (18 bp):
AAAATTAAAAAAATAGAT
Found at i:75167933 original size:15 final size:15
Alignment explanation
Indices: 75167900--75167941 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
75167890 TTAAAAATAT
* *
75167900 TTTTCAATTTTATATA
1 TTTTAAATTTT-TAAA
75167916 TTTTAAATTTTTAAA
1 TTTTAAATTTTTAAA
75167931 -TTTAAATTTTT
1 TTTTAAATTTTT
75167942 TAGAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 11 0.46
15 3 0.12
16 10 0.42
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTTAAATTTTTAAA
Found at i:75169910 original size:21 final size:22
Alignment explanation
Indices: 75169883--75169945 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
75169873 CCTGAAAATA
*
75169883 ATAAAATTTTAATTTAATTATT
1 ATAAAATTATAATTTAATTATT
* * *
75169905 -TAAAATTATATTTTTAGTATT
1 ATAAAATTATAATTTAATTATT
75169926 ATAAAAATTATAATTTAATT
1 AT-AAAATTATAATTTAATT
75169946 TCGGCCTCCC
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 17 0.53
22 1 0.03
23 14 0.44
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATAAAATTATAATTTAATTATT
Found at i:75169992 original size:15 final size:16
Alignment explanation
Indices: 75169962--75169994 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75169952 TCCCTTAAAC
*
75169962 AAAATTTCTTACTTTT
1 AAAATTTCTAACTTTT
75169978 AAAATTT-TAACTTTT
1 AAAATTTCTAACTTTT
75169993 AA
1 AA
75169995 TACTATTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (16 bp):
AAAATTTCTAACTTTT
Found at i:75173909 original size:28 final size:28
Alignment explanation
Indices: 75173869--75173931 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
75173859 GTCATTATCA
75173869 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
75173897 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
75173925 ACCCCAT
1 ACCCCAT
75173932 TAATATGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:75174092 original size:14 final size:14
Alignment explanation
Indices: 75174052--75174092 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
75174042 AAAAAGAAGA
75174052 TACACTCTCTCTTC
1 TACACTCTCTCTTC
75174066 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
75174077 TACACTCTTTCTTC
1 TACACTCTCTCTTC
75174091 TA
1 TA
75174093 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:75179330 original size:28 final size:28
Alignment explanation
Indices: 75179290--75179352 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 28
75179280 GTCATTATCA
75179290 ACCCCATAAGTTAT-AGAACTCTTT-CTAT
1 ACCCCATAAGTTATGAG-ACT-TTTCCTAT
75179318 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATGAGACTTTTCCTAT
75179346 ACCCCAT
1 ACCCCAT
75179353 TAATATAGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
27 3 0.09
28 28 0.85
29 2 0.06
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATGAGACTTTTCCTAT
Found at i:75179512 original size:14 final size:14
Alignment explanation
Indices: 75179472--75179512 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
75179462 AAAAAAAAGA
75179472 TACACTCTCTCTTC
1 TACACTCTCTCTTC
75179486 TACA-T-TCTC-TC
1 TACACTCTCTCTTC
*
75179497 TACACTCTTTCTTC
1 TACACTCTCTCTTC
75179511 TA
1 TA
75179513 TCACATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 4 0.17
14 8 0.35
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (14 bp):
TACACTCTCTCTTC
Found at i:75180964 original size:14 final size:15
Alignment explanation
Indices: 75180936--75180967 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75180926 TTTATCTATC
75180936 AACAATTTAAAAAAA
1 AACAATTTAAAAAAA
75180951 AACAATTTAAAAAAA
1 AACAATTTAAAAAAA
75180966 AA
1 AA
75180968 GTAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (15 bp):
AACAATTTAAAAAAA
Found at i:75182584 original size:15 final size:17
Alignment explanation
Indices: 75182559--75182594 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
75182549 ATGTGAATAA
75182559 TATTGTTTAAAA-TTAT
1 TATTGTTTAAAATTTAT
75182575 TATT-TTTAAAATTTAT
1 TATTGTTTAAAATTTAT
75182591 TATT
1 TATT
75182595 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TATTGTTTAAAATTTAT
Found at i:75182590 original size:13 final size:14
Alignment explanation
Indices: 75182554--75182600 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
75182544 ATAATATGTG
*
75182554 AATAATATTGTTTAA
1 AATATTATT-TTTAA
75182569 AATTATTATTTTTAA
1 AA-TATTATTTTTAA
*
75182584 AAT-TTATTATTAA
1 AATATTATTTTTAA
75182597 AATA
1 AATA
75182601 AAATTGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
14 1 0.04
15 9 0.32
16 6 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (14 bp):
AATATTATTTTTAA
Found at i:75185094 original size:23 final size:22
Alignment explanation
Indices: 75185068--75185135 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
75185058 TATAATAGTA
*
75185068 ATAGTGTTAGAAATATACTACAT
1 ATAGTATTAGAAATATA-TACAT
* *
75185091 ATAGTATTTGAAATCTATACAT
1 ATAGTATTAGAAATATATACAT
* * * *
75185113 AAAATAGTAAAAATATATACAT
1 ATAGTATTAGAAATATATACAT
75185135 A
1 A
75185136 ACTTGTATTA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (22 bp):
ATAGTATTAGAAATATATACAT
Found at i:75185767 original size:9 final size:9
Alignment explanation
Indices: 75185737--75185769 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
75185727 ACACTAAGAC
75185737 ATATAATAA
1 ATATAATAA
*
75185746 ATACAATAA
1 ATATAATAA
75185755 ATATAATAA
1 ATATAATAA
75185764 ATATAA
1 ATATAA
75185770 ATATTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (9 bp):
ATATAATAA
Found at i:75185769 original size:15 final size:16
Alignment explanation
Indices: 75185737--75185788 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
75185727 ACACTAAGAC
75185737 ATATAATAAATACAATAA
1 ATATAATAAAT--AATAA
75185755 ATATAATAAAT-ATAA
1 ATATAATAAATAATAA
* *
75185770 ATATTATAATTAATAA
1 ATATAATAAATAATAA
75185786 ATA
1 ATA
75185789 ACAGAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 13 0.42
16 7 0.23
18 11 0.35
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAATAAATAATAA
Found at i:75185777 original size:18 final size:18
Alignment explanation
Indices: 75185737--75185786 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
75185727 ACACTAAGAC
*
75185737 ATATAATAAATACAATAA
1 ATATAATAAATAAAATAA
75185755 ATATAATAAATATAAAT-A
1 ATATAATAAATA-AAATAA
* *
75185773 TTATAATTAATAAA
1 ATATAATAAATAAA
75185787 TAACAGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 2 0.07
18 23 0.82
19 3 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATAATAAATAAAATAA
Found at i:75185817 original size:21 final size:19
Alignment explanation
Indices: 75185792--75185831 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
75185782 ATAAATAACA
75185792 GAAAATGAAAACAAGTAAATT
1 GAAAAT-AAAAC-AGTAAATT
*
75185813 GAAAATAAAGCAGTAAATT
1 GAAAATAAAACAGTAAATT
75185832 AACAAAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (19 bp):
GAAAATAAAACAGTAAATT
Found at i:75185829 original size:19 final size:19
Alignment explanation
Indices: 75185805--75185857 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 19
75185795 AATGAAAACA
*
75185805 AGTAAATTGAAAATAAAGC
1 AGTAAATTGAACATAAAGC
*
75185824 AGTAAATT-AACA-AAAGG
1 AGTAAATTGAACATAAAGC
*
75185841 ACTAAATTGAACATAAA
1 AGTAAATTGAACATAAA
75185858 ATATAAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 11 0.38
18 7 0.24
19 11 0.38
ACGTcount: A:0.58, C:0.08, G:0.13, T:0.21
Consensus pattern (19 bp):
AGTAAATTGAACATAAAGC
Found at i:75186243 original size:17 final size:17
Alignment explanation
Indices: 75186221--75186281 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
75186211 AAGCCCCCCC
75186221 AAAAAAAAACCTAACCA
1 AAAAAAAAACCTAACCA
** **
75186238 AAAAAAAAA-AGAAGAA
1 AAAAAAAAACCTAACCA
*
75186254 AAAAGAAAAACCTAACCC
1 AAAA-AAAAACCTAACCA
75186272 AAAAAAAAAC
1 AAAAAAAAAC
75186282 TAAGAAACCC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
16 7 0.21
17 20 0.61
18 6 0.18
ACGTcount: A:0.75, C:0.16, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAAAAACCTAACCA
Found at i:75187108 original size:11 final size:11
Alignment explanation
Indices: 75187084--75187126 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
75187074 TTCTAATACG
*
75187084 TATATATATTA
1 TATATATTTTA
*
75187095 TATGTATTTTA
1 TATATATTTTA
* *
75187106 TATATATTATG
1 TATATATTTTA
75187117 TATATATTTT
1 TATATATTTT
75187127 TTAATGCAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:75187128 original size:24 final size:24
Alignment explanation
Indices: 75187084--75187215 Score: 63
Period size: 24 Copynumber: 5.8 Consensus size: 24
75187074 TTCTAATACG
* *
75187084 TATATA-TAT-TATATGTATTTTA
1 TATATATTATGTATATATTTTTTA
75187106 TATATATTATGTATATATTTTTTA
1 TATATATTATGTATATATTTTTTA
*
75187130 -ATGCA-ATTA-GTTATATATTTCTTA
1 TAT--ATATTATG-TATATATTTTTTA
* *
75187154 TACTAT-TCCATGTATGTA--TTTTA
1 TA-TATAT-TATGTATATATTTTTTA
* *
75187177 TATCATCTTATGTATATA-TTCTTA
1 TAT-ATATTATGTATATATTTTTTA
75187201 -A-ATATTAT-TATATAT
1 TATATATTATGTATATAT
75187216 AAATATATAT
Statistics
Matches: 86, Mismatches: 10, Indels: 29
0.69 0.08 0.23
Matches are distributed among these distances:
20 6 0.07
21 6 0.07
22 7 0.08
23 23 0.27
24 34 0.40
25 8 0.09
26 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.55
Consensus pattern (24 bp):
TATATATTATGTATATATTTTTTA
Found at i:75187353 original size:19 final size:17
Alignment explanation
Indices: 75187312--75187357 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
75187302 TACATTAGTG
75187312 TATATTTTATGTACATA
1 TATATTTTATGTACATA
*
75187329 TATATTTTTTGTACATA
1 TATATTTTATGTACATA
75187346 TCATTATTTTAT
1 T-A-TATTTTAT
75187358 ATTATTGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 17 0.68
18 1 0.04
19 7 0.28
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (17 bp):
TATATTTTATGTACATA
Found at i:75199056 original size:68 final size:67
Alignment explanation
Indices: 75198973--75199241 Score: 251
Period size: 62 Copynumber: 3.9 Consensus size: 67
75198963 TTTTATTTCA
* *
75198973 AAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTTC
1 AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-TCAATTTTC
75199038 TGT
65 TGT
** * * **
75199041 ATGTTCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACGCGCTGAGGTA--T---TTTTAA
1 AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTTCT
**
75199101 AA
66 GT
*
75199103 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATTT-T
*
75199168 GTTGT
64 -CTGT
* * * * *
75199173 CAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTCA
1 ----AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTA-TTTCA
75199238 ATTT
59 ATTT
75199242 CCGTTTTTCA
Statistics
Matches: 163, Mismatches: 23, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
62 51 0.31
63 1 0.01
65 2 0.01
68 50 0.31
69 1 0.01
74 37 0.23
75 1 0.01
76 20 0.12
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (67 bp):
AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTCAATTTTCT
GT
Found at i:75199375 original size:79 final size:76
Alignment explanation
Indices: 75199246--75199688 Score: 526
Period size: 79 Copynumber: 5.8 Consensus size: 76
75199236 CAATTTCCGT
* * *
75199246 TTTTCAATTTCTGCCTTTC--AAAAAAATTAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGA
1 TTTTCAATTTCTG-TTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
75199309 CATGCTGAGGTA
65 CATGCTGAGGTA
* * ** *
75199321 ATTTCAATTTCTGTTGTCAAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
1 TTTTCAATTTCTGTTTTC---AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
75199386 GACATGCTAAGGTA
63 GACATGCTGAGGTA
* *
75199400 TTTTCAATTTTTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
1 TTTTCAATTTCTGT-TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
75199463 CACGCTGAGGTA
65 CATGCTGAGGTA
* * * ** * *
75199475 ATTTCAATTTCTGTTTTC----AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGAT
1 TTTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
75199536 ACGTTGAGGTA
66 ATGCTGAGGTA
*
75199547 TTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGT
1 TTTTCAATTTCTGTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
75199611 TCACATGCTGAGGTA
64 --ACATGCTGAGGTA
*
75199626 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTTCAATTTCTGT-TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
75199689 ATCACACACT
Statistics
Matches: 314, Mismatches: 38, Indels: 27
0.83 0.10 0.07
Matches are distributed among these distances:
72 63 0.20
74 7 0.02
75 74 0.24
76 1 0.00
77 35 0.11
79 126 0.40
80 8 0.03
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
ATGCTGAGGTA
Found at i:75200981 original size:22 final size:22
Alignment explanation
Indices: 75200953--75201004 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
75200943 TTTCCTTTTC
75200953 CTCCCTTCCTTCTCTCTTCTTT
1 CTCCCTTCCTTCTCTCTTCTTT
* * *
75200975 CTCCCTTCCTTTTTTTTTCTTT
1 CTCCCTTCCTTCTCTCTTCTTT
*
75200997 CTCTCTTC
1 CTCCCTTC
75201005 AAAATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (22 bp):
CTCCCTTCCTTCTCTCTTCTTT
Found at i:75201319 original size:9 final size:9
Alignment explanation
Indices: 75201301--75201336 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
75201291 TTCTAATACG
75201301 TATATATAT
1 TATATATAT
*
75201310 TATATGTAT
1 TATATATAT
75201319 TATATATAT
1 TATATATAT
*
75201328 TATGTATAT
1 TATATATAT
75201337 ATTTTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (9 bp):
TATATATAT
Found at i:75201324 original size:16 final size:15
Alignment explanation
Indices: 75201300--75201338 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
75201290 TTTCTAATAC
75201300 GTATATATAT-TATAT
1 GTATATATATAT-TAT
75201315 GTATTATATATATTAT
1 GTA-TATATATATTAT
75201331 GTATATAT
1 GTATATAT
75201339 TTTTTAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.36
16 13 0.59
17 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (15 bp):
GTATATATATATTAT
Found at i:75201425 original size:23 final size:24
Alignment explanation
Indices: 75201320--75201430 Score: 63
Period size: 23 Copynumber: 4.6 Consensus size: 24
75201310 TATATGTATT
*
75201320 ATATATATTATGTATATATTTTTTA
1 ATAT-TATTATGTATATATTTCTTA
***
75201345 ATGCAATTA-GTTATATATTTCTT-
1 ATATTATTATG-TATATATTTCTTA
* *
75201368 ATACTATTCCATGTATGTA-TT-TTA
1 ATATTATT--ATGTATATATTTCTTA
75201392 TATCATT-TTATGTATATA-TTCTTA
1 -AT-ATTATTATGTATATATTTCTTA
*
75201416 ATATTATTATATATA
1 ATATTATTATGTATA
75201431 AATATATATA
Statistics
Matches: 67, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
22 3 0.04
23 29 0.43
24 20 0.30
25 12 0.18
26 3 0.04
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.55
Consensus pattern (24 bp):
ATATTATTATGTATATATTTCTTA
Found at i:75212697 original size:5 final size:6
Alignment explanation
Indices: 75212680--75212704 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75212670 TTAATTATAA
75212680 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
75212705 TTAAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:75224417 original size:19 final size:19
Alignment explanation
Indices: 75224393--75224451 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
75224383 TATATAATAT
75224393 GATTTACAACAATAGTTTA
1 GATTTACAACAATAGTTTA
* *
75224412 GATTTATATATAATA---T-
1 GATTTACA-ACAATAGTTTA
75224428 GATTTACAACAATAGTTTA
1 GATTTACAACAATAGTTTA
75224447 GATTT
1 GATTT
75224452 GTGGTGTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
15 5 0.16
16 7 0.23
17 1 0.03
18 1 0.03
19 12 0.39
20 5 0.16
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (19 bp):
GATTTACAACAATAGTTTA
Found at i:75224421 original size:35 final size:35
Alignment explanation
Indices: 75224381--75224451 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
75224371 GCTTCTGTTA
75224381 TATATATAATATGATTTACAACAATAGTTTAGATT
1 TATATATAATATGATTTACAACAATAGTTTAGATT
75224416 TATATATAATATGATTTACAACAATAGTTTAGATT
1 TATATATAATATGATTTACAACAATAGTTTAGATT
75224451 T
1 T
75224452 GTGGTGTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (35 bp):
TATATATAATATGATTTACAACAATAGTTTAGATT
Found at i:75225417 original size:28 final size:28
Alignment explanation
Indices: 75225374--75225444 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
75225364 AAATCTCAAA
*
75225374 AAAACCCTAAACCCTACTTTAAATAAAC
1 AAAACCCTAAACCCTAATTTAAATAAAC
*
75225402 AAAACCCTAAATCCTAATTTAAATAAAC
1 AAAACCCTAAACCCTAATTTAAATAAAC
*
75225430 AAAACCCTAACCCCT
1 AAAACCCTAAACCCT
75225445 TAAAAACGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (28 bp):
AAAACCCTAAACCCTAATTTAAATAAAC
Found at i:75237295 original size:30 final size:30
Alignment explanation
Indices: 75237260--75237319 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75237250 TAGGTAGTTC
75237260 CACACGGATA-ATCCACACGCCCGTGTGTCA
1 CACACGGATAGA-CCACACGCCCGTGTGTCA
* * *
75237290 CACACGGGTAGACTACACGTCCGTGTGTCA
1 CACACGGATAGACCACACGCCCGTGTGTCA
75237320 TGGCCGTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.18
Consensus pattern (30 bp):
CACACGGATAGACCACACGCCCGTGTGTCA
Found at i:75244966 original size:32 final size:31
Alignment explanation
Indices: 75244930--75244989 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
75244920 AAATAGTCAT
75244930 TGAATTATTCAAAAAAATTTTATTTAAATTAC
1 TGAATTATT-AAAAAAATTTTATTTAAATTAC
* **
75244962 TGAATTATTTAAAAGTTTTTATTTAAAT
1 TGAATTATTAAAAAAATTTTATTTAAAT
75244990 CATTTGATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (31 bp):
TGAATTATTAAAAAAATTTTATTTAAATTAC
Found at i:75245000 original size:31 final size:32
Alignment explanation
Indices: 75244930--75245007 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 32
75244920 AAATAGTCAT
** *
75244930 TGAATTATTCA-AAAAAATTTTATTTAAATTAC
1 TGAATTATT-ATAAAAGTTTTTATTTAAATCAC
*
75244962 TGAATTATT-TAAAAGTTTTTATTTAAATCATT
1 TGAATTATTATAAAAGTTTTTATTTAAATCA-C
75244994 TG-ATTATTATAAAA
1 TGAATTATTATAAAA
75245008 AAGTCTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
31 23 0.59
32 16 0.41
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (32 bp):
TGAATTATTATAAAAGTTTTTATTTAAATCAC
Found at i:75245847 original size:19 final size:19
Alignment explanation
Indices: 75245825--75245864 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75245815 TTTTCTGCTT
*
75245825 TCCCATCTGTTTTGCTTTA
1 TCCCATCTGCTTTGCTTTA
* *
75245844 TCCCCTTTGCTTTGCTTTA
1 TCCCATCTGCTTTGCTTTA
75245863 TC
1 TC
75245865 TAAAAAATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.07, C:0.30, G:0.10, T:0.53
Consensus pattern (19 bp):
TCCCATCTGCTTTGCTTTA
Found at i:75250884 original size:64 final size:64
Alignment explanation
Indices: 75250762--75250884 Score: 183
Period size: 64 Copynumber: 1.9 Consensus size: 64
75250752 CATTCATATT
* * * * *
75250762 ACATCTAGTTAGGAGCATTTGCTTCATTTTGATCACAGCGTCCTAATTATTTGACATAAACATC
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCACAGCATCCTAATTATTCGACATAAACATC
* *
75250826 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTCGGCATAA
1 ACATCTAGCTAGGAGCATTTGATTCATTTCGATCACAGCATCCTAATTATTCGACATAA
75250885 GTATAGATAC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCATTTGATTCATTTCGATCACAGCATCCTAATTATTCGACATAAACATC
Found at i:75251245 original size:45 final size:45
Alignment explanation
Indices: 75251171--75251258 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
75251161 AACAGGCTGA
*
75251171 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTAG
1 AAATGACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTAG
*
75251216 AAATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATT
1 AAATGACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATT
75251259 TTAGCCACCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (45 bp):
AAATGACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTAG
Found at i:75251257 original size:177 final size:177
Alignment explanation
Indices: 75250955--75251389 Score: 674
Period size: 177 Copynumber: 2.5 Consensus size: 177
75250945 CGGTGAAGTC
* * *
75250955 ACGAGCCTTAACCCTCTAAGTAGTAAGGTAATAGGCTGCAAATTACAGATCTTATCTCCATGTAT
1 ACGAGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTAT
** * * *
75251020 CGGCTATGGAAAAGATCAGAAATGGCGAGTTTTATCTCCATGTATCGACTATGGAGCAGATTTTA
66 CGGCTATGGAGCAGATCAGAAATGACAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTA
* * *
75251085 GCCACCGACCTTATCTCTCTGGGGTAGCAAGAGAGCAGGTTGAAGAT
131 GCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGAT
* *
75251132 ACGAGTCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTAT
1 ACGAGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTAT
* *
75251197 CGGCTATGGAGCAGATTAGAAATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTA
66 CGGCTATGGAGCAGATCAGAAATGACAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTA
75251262 GCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGAT
131 GCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGAT
** * *
75251309 ACGAGCCTTAACCC-CTTAACCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCTCCATGTA
1 ACGAGCCTTAACCCTC-TAAGTAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTA
*
75251373 TAGGCTATGGAGCAGAT
65 TCGGCTATGGAGCAGAT
75251390 GTTAGCCACC
Statistics
Matches: 235, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
176 1 0.00
177 234 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (177 bp):
ACGAGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTAT
CGGCTATGGAGCAGATCAGAAATGACAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTA
GCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGAT
Found at i:75251465 original size:132 final size:132
Alignment explanation
Indices: 75251216--75251521 Score: 452
Period size: 132 Copynumber: 2.3 Consensus size: 132
75251206 AGCAGATTAG
* * *
75251216 AAATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTA
1 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCAACCTTATCTCTA
75251281 TGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTTAACCAGTAGGGTAACAGGCT
66 TGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTTAACCAGTAGGGTAACAGGCT
75251346 AA
131 AA
* * * ** *
75251348 AAATTATAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCTC
1 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCAACCTTATCTCTA
* *
75251413 TGAGGTAGCAAGAGAGCAGGTTGAAGATATGAGCCTTAACCCAC-TAAGCAGTAGGGTAACAGGC
66 TGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCC-CTTAACCAGTAGGGTAACAGGC
*
75251477 TGA
130 TAA
* * * *
75251480 AAATTACAAAGCTTATCTTCATGTATCGGTTATGGAACAGAT
1 AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGAT
75251522 CAGAAATGAC
Statistics
Matches: 154, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
132 153 0.99
133 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (132 bp):
AAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCAACCTTATCTCTA
TGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTTAACCAGTAGGGTAACAGGCT
AA
Found at i:75251543 original size:177 final size:176
Alignment explanation
Indices: 75251358--75252051 Score: 1113
Period size: 177 Copynumber: 3.9 Consensus size: 176
75251348 AAATTATAGA
* * *
75251358 TCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
*
75251423 AGAGAGCAGGTTGAAGATATGAGCCTTAACCCACTAAGCAGTAGGGTAACAGGCTGAAAATTACA
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCC-CTAAGCAGTAGGGTAACAGGCTGAAAATTACA
* * * * *
75251488 AAGCTTATCTTCATGTATCGGTTATGGAACAGATC-AGAAATGACGAG
130 GAGCTTATCTCCATGTATCGGCTATGGAGCAGATCGA-AAATGGCGAG
* * *
75251535 TCTTATCTCCATGTATCGGCTAGGGAGCAGATTTTAGCCACCGACTTTATCTCTCAGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
75251600 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACA
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCC-CTAAGCAGTAGGGTAACAGGCTGAAAATTACA
*
75251665 GATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
130 GAGCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
* * * *
75251712 TCTTATCTCCATGTATCGGCTGTGGAGCAGATTTTAGCCACTGGCCTTATCTCTCTGATGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
75251777 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCCA-TAGGGTAACAGGCTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACGAGCCTTAA-CCCCTAAG-CAGTAGGGTAACAGGCTGAAAATTAC
*
75251841 AGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
129 AGAGCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
* *
75251889 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
* *
75251954 AGAGAGCAGGTTGAAGATACAAGCCTTAACCCCTAAACAGTAGGGTAACAGGCTGAAAATTACAG
66 AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
* *
75252019 AGCTTATCTCCATGTATCAGCTATGGAGTAGAT
131 AGCTTATCTCCATGTATCGGCTATGGAGCAGAT
75252052 TTTAGCCACC
Statistics
Matches: 481, Mismatches: 32, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
175 2 0.00
176 62 0.13
177 411 0.85
178 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (176 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
AGCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAG
Found at i:75251610 original size:309 final size:309
Alignment explanation
Indices: 75251051--75251698 Score: 1075
Period size: 309 Copynumber: 2.1 Consensus size: 309
75251041 ATGGCGAGTT
* * *
75251051 TTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGGGGTAGCAAG
1 TTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAG
* * *
75251116 AGAGCAGGTTGAAGATACGAGTCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAAATTACAAA
66 AGAGCAGGTTGAAGATACGAGCCTTAACCCACTAAGCAGTAGGGTAACAGGCTGAAAATTACAAA
* * *
75251181 TCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGACAAGTCTTATCTCCATGTATCGGC
131 GCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGACAAGTCTTATCTCCATGTATCGGC
*
75251246 TATGGAGCAGATTTTAGCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGATAC
196 TAGGGAGCAGATTTTAGCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGATAC
*
75251311 GAGCCTTAACCC-CTTAACCAGTAGGGTAACAGGCTAAAAATTATAGATC
261 GAGCCTTAACCCTC-TAACCAGTAGGGTAACAGGCTAAAAATTACAGATC
* *
75251360 TTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCTCTGAGGTAGCAAG
1 TTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAG
*
75251425 AGAGCAGGTTGAAGATATGAGCCTTAACCCACTAAGCAGTAGGGTAACAGGCTGAAAATTACAAA
66 AGAGCAGGTTGAAGATACGAGCCTTAACCCACTAAGCAGTAGGGTAACAGGCTGAAAATTACAAA
* * *
75251490 GCTTATCTTCATGTATCGGTTATGGAACAGATCAGAAATGACGAGTCTTATCTCCATGTATCGGC
131 GCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGACAAGTCTTATCTCCATGTATCGGC
* *
75251555 TAGGGAGCAGATTTTAGCCACCGACTTTATCTCTCA-GAGGTAGCAAGAGAGCAGGTTGAAGATA
196 TAGGGAGCAGATTTTAGCCACCAACCTTATCTCT-ATGAGGTAGCAAGAGAGCAGGTTGAAGATA
* *
75251619 CGAGCCTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATC
260 CGAGCCTTAACCCTCTAACCAGTAGGGTAACAGGCTAAAAATTACAGATC
75251669 TTATCTCCATGTATCGGCTATGGAGCAGAT
1 TTATCTCCATGTATCGGCTATGGAGCAGAT
75251699 CGAAAATGGC
Statistics
Matches: 315, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
309 313 0.99
310 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (309 bp):
TTATCTCCATGTATCGGCTATGGAGCAGATGTTAGCCACCGACCTTATCTCTCTGAGGTAGCAAG
AGAGCAGGTTGAAGATACGAGCCTTAACCCACTAAGCAGTAGGGTAACAGGCTGAAAATTACAAA
GCTTATCTCCATGTATCGGCTATGGAACAGATCAGAAATGACAAGTCTTATCTCCATGTATCGGC
TAGGGAGCAGATTTTAGCCACCAACCTTATCTCTATGAGGTAGCAAGAGAGCAGGTTGAAGATAC
GAGCCTTAACCCTCTAACCAGTAGGGTAACAGGCTAAAAATTACAGATC
Found at i:75251868 original size:486 final size:486
Alignment explanation
Indices: 75250957--75251875 Score: 1509
Period size: 486 Copynumber: 1.9 Consensus size: 486
75250947 GTGAAGTCAC
* * * * * *
75250957 GAGCCTTAACCCTCTAAGTAGTAAGGTAATAGGCTGCAAATTACAGATCTTATCTCCATGTATCG
1 GAGCCTTAACCCACTAAGCAGTAAGGTAACAGGCTGAAAATTACAAAGCTTATCTCCATGTATCG
* * *
75251022 GCTATGGAAAAGATCAGAAATGGCGAGTTTTATCTCCATGTATCGACTATGGAGCAGATTTTAGC
66 GCTATGGAAAAGATCAGAAATGACGAGTCTTATCTCCATGTATCGACTAGGGAGCAGATTTTAGC
* * *
75251087 CACCGACCTTATCTCTCTGGGGTAGCAAGAGAGCAGGTTGAAGATACGAGTCTTAACCCTCTAAG
131 CACCGACCTTATCTCTCAGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
* *
75251152 TAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGA
196 CAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATGAGA
75251217 AATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTAT
261 AATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTAT
*
75251282 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCTTAACCAGTAGGGTAACAGGCTA
326 GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAACCAGTAGGGTAACAGGCTA
*
75251347 AAAATTATAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCT
391 AAAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCT
75251412 CTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
456 CTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
* *
75251443 GAGCCTTAACCCACTAAGCAGTAGGGTAACAGGCTGAAAATTACAAAGCTTATCTTCATGTATCG
1 GAGCCTTAACCCACTAAGCAGTAAGGTAACAGGCTGAAAATTACAAAGCTTATCTCCATGTATCG
* * *
75251508 GTTATGGAACAGATCAGAAATGACGAGTCTTATCTCCATGTATCGGCTAGGGAGCAGATTTTAGC
66 GCTATGGAAAAGATCAGAAATGACGAGTCTTATCTCCATGTATCGACTAGGGAGCAGATTTTAGC
*
75251573 CACCGACTTTATCTCTCAGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
131 CACCGACCTTATCTCTCAGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
*
75251638 CAGTAGGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCGA-
196 CAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGAT-GAG
* * * *** *
75251702 AAATGGCGAGTCTTATCTCCATGTATCGGCTGTGGAGCAGATTTTAGCCACTGGCCTTATCTCTC
260 AAATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTA
*
75251767 TGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAAGCCA-TAGGGTAACAGGC
325 TGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAA-CCAGTAGGGTAACAGGC
* *
75251831 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGAT
389 TAAAAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGAT
75251876 CGAAAATGGC
Statistics
Matches: 398, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
486 394 0.99
487 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (486 bp):
GAGCCTTAACCCACTAAGCAGTAAGGTAACAGGCTGAAAATTACAAAGCTTATCTCCATGTATCG
GCTATGGAAAAGATCAGAAATGACGAGTCTTATCTCCATGTATCGACTAGGGAGCAGATTTTAGC
CACCGACCTTATCTCTCAGAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCTCTAAG
CAGTAGGGTAACAGGCTGAAAATTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATGAGA
AATGACAAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTAT
GAGGTAGCAAGAGAGCAGGTTGAAGATACGAGCCTTAACCCCCTAACCAGTAGGGTAACAGGCTA
AAAATTACAGATCTTATCTCCATGTATAGGCTATGGAGCAGATGTTAGCCACCGGCCTTATCTCT
CTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
Found at i:75252112 original size:131 final size:132
Alignment explanation
Indices: 75251890--75252158 Score: 423
Period size: 131 Copynumber: 2.0 Consensus size: 132
75251880 AATGGCGAGT
*
75251890 CTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCAA
1 CTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCAA
* * *
75251955 GAGAGCAGGTTGAAGATACAAGCCTTAA-CCCCTAAACAGTAGGGTAACAGGCTGAAAATTACAG
66 GAGAGCAGGTTGAAGATACAACCCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAAAAGTACAG
75252019 AG
131 AG
* * *
75252021 CTTATCTCCATGTATCAGCTATGGAGTAGATTTTAGCCACCGGCCTTATCTTTCTGAGGTAGCAA
1 CTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCAA
* * * *
75252086 GAGAGCAGGTTGAAGATACGACCCTTAACCCCCTAAGCAGTAGGGTAACAAGTTGGAAAGTACAG
66 GAGAGCAGGTTGAAGATACAACCCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAAAAGTACAG
*
75252151 AT
131 AG
75252153 CTTATC
1 CTTATC
75252159 CCTAAATAGT
Statistics
Matches: 125, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
131 87 0.70
132 38 0.30
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (132 bp):
CTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCACCGACCTTATATTTCTGAGGTAGCAA
GAGAGCAGGTTGAAGATACAACCCTTAACCCCCTAAACAGTAGGGTAACAAGCTGAAAAGTACAG
AG
Found at i:75258061 original size:15 final size:15
Alignment explanation
Indices: 75258041--75258071 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75258031 GAGCAAGGAT
75258041 AGAAAAGGAAAAGAA
1 AGAAAAGGAAAAGAA
75258056 AGAAAAGGAAAAGAA
1 AGAAAAGGAAAAGAA
75258071 A
1 A
75258072 AGTCAAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AGAAAAGGAAAAGAA
Found at i:75266261 original size:21 final size:22
Alignment explanation
Indices: 75266221--75266268 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
75266211 TAAAATAATG
75266221 AAAATAATTTAAAAATAATTTT
1 AAAATAATTTAAAAATAATTTT
*
75266243 TAAAT-ATTTATAAAA-AATTTT
1 AAAATAATTTA-AAAATAATTTT
75266264 AAAAT
1 AAAAT
75266269 TTTGTCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATAATTTAAAAATAATTTT
Found at i:75266307 original size:13 final size:13
Alignment explanation
Indices: 75266289--75266321 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75266279 AATAAATCTG
75266289 AAAATTAATATAA
1 AAAATTAATATAA
75266302 AAAATT-ATATAA
1 AAAATTAATATAA
*
75266314 ACAATTAA
1 AAAATTAA
75266322 AAAATTCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTAATATAA
Found at i:75271404 original size:31 final size:31
Alignment explanation
Indices: 75271377--75271437 Score: 113
Period size: 31 Copynumber: 1.9 Consensus size: 31
75271367 TTAAAAAGAT
75271377 AGTTTAGGAAATGTATTTAAAAAAAAAAACC
1 AGTTTAGGAAATGTATTTAAAAAAAAAAACC
75271408 AGTTTAGGAAATGTATTTAAAAAATAAAAA
1 AGTTTAGGAAATGTATTTAAAAAA-AAAAA
75271438 ACCGCCTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.56, C:0.03, G:0.13, T:0.28
Consensus pattern (31 bp):
AGTTTAGGAAATGTATTTAAAAAAAAAAACC
Found at i:75274538 original size:162 final size:162
Alignment explanation
Indices: 75274252--75274567 Score: 528
Period size: 162 Copynumber: 2.0 Consensus size: 162
75274242 AACCTTGGAC
75274252 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
1 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
* * *
75274317 CCACCATTACTAGGGGAGAGTAATTGGTTTTTAGTTGGATTGGTCAATTTTCATGACTTATCC-A
66 CCACCATTACTAGGGGAGAATAATTGGTTGTTAGTTAGATTGGTCAATTTTCATGACTTATCCGA
75274381 CCTTAACCAACCACTGCCAAATTTATATAGGAA
131 -CTTAACCAACCACTGCCAAATTTATATAGGAA
*
75274414 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCACAATGCGAACAATCATCAA
1 CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
* * *
75274479 CCACCATTAAC-AGGGGAGAATAATTGGTTGTTAGTTAGTTTGGTCGATTTTCCTGACTTATCCG
66 CCACCATT-ACTAGGGGAGAATAATTGGTTGTTAGTTAGATTGGTCAATTTTCATGACTTATCCG
*
75274543 ACTTAACCGACCACTGCCAAATTTA
130 ACTTAACCAACCACTGCCAAATTTA
75274568 ACCAACTAAC
Statistics
Matches: 144, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
162 141 0.98
163 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (162 bp):
CTTTCTCCTTAATCACCAAAGCTATACTCATCGGCTCTTGACACCAAAATGCGAACAATCATCAA
CCACCATTACTAGGGGAGAATAATTGGTTGTTAGTTAGATTGGTCAATTTTCATGACTTATCCGA
CTTAACCAACCACTGCCAAATTTATATAGGAA
Found at i:75274866 original size:24 final size:24
Alignment explanation
Indices: 75274820--75274867 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
75274810 AATATATATC
**
75274820 ATAATTGGATTGGGTTTGGTTAAA
1 ATAATTGGATTGGGTTAAGTTAAA
* *
75274844 ATAATTGGGTTGGGTTAATTTAAA
1 ATAATTGGATTGGGTTAAGTTAAA
75274868 CTATATATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (24 bp):
ATAATTGGATTGGGTTAAGTTAAA
Found at i:75274888 original size:11 final size:11
Alignment explanation
Indices: 75274869--75274914 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
75274859 TAATTTAAAC
*
75274869 TATATATATAT
1 TATAAATATAT
75274880 TATAAATATAT
1 TATAAATATAT
75274891 T-TAAAATATAT
1 TAT-AAATATAT
75274902 TA-AAATCATAT
1 TATAAAT-ATAT
75274913 TA
1 TA
75274915 ACCAAACCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
10 5 0.16
11 26 0.84
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (11 bp):
TATAAATATAT
Found at i:75274915 original size:11 final size:10
Alignment explanation
Indices: 75274874--75274915 Score: 57
Period size: 11 Copynumber: 3.9 Consensus size: 10
75274864 TAAACTATAT
75274874 ATATATTATAA
1 ATATATTA-AA
75274885 ATATATTTAAA
1 ATATA-TTAAA
75274896 ATATATTAAA
1 ATATATTAAA
75274906 ATCATATTAA
1 AT-ATATTAA
75274916 CCAAACCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.24
11 19 0.66
12 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATTAAA
Found at i:75276785 original size:18 final size:18
Alignment explanation
Indices: 75276762--75276834 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 18
75276752 AAGAAAATCC
*
75276762 AAAATTTATATTTTTAAA
1 AAAATTTATAATTTTAAA
75276780 AAAA-TTATAATTTTAAA
1 AAAATTTATAATTTTAAA
* * *
75276797 AAAATTCTAAAGAATATATAA
1 AAAATT-TATA-ATTTTA-AA
*
75276818 AAAATTTAAAATTTTAA
1 AAAATTTATAATTTTAA
75276835 TTTTTTTCTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
17 16 0.36
18 6 0.13
19 7 0.16
20 8 0.18
21 8 0.18
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (18 bp):
AAAATTTATAATTTTAAA
Found at i:75281005 original size:42 final size:41
Alignment explanation
Indices: 75280897--75281037 Score: 106
Period size: 43 Copynumber: 3.3 Consensus size: 41
75280887 ATATGTGTTA
* *
75280897 TCGTGTAAGA-CCTCATCTGGGACGTTGGCATCG-ACTTATAATT
1 TCGTGTAAGACCCT-ATCTGGGAC-ATGGCATCGTA-TT-TGATT
* * * *
75280940 TATGTATAAGACCATGTCTGGGACATCGGCATCGTATTTGATT
1 T-CGTGTAAGACCCTATCTGGGACAT-GGCATCGTATTTGATT
* *
75280983 TCGTGTAAGACCCTATCTGGGACAATGACATTGATATTTGATT
1 TCGTGTAAGACCCTATCTGGGAC-ATGGCATCG-TATTTGATT
* *
75281026 ACATGTAAGACC
1 TCGTGTAAGACC
75281038 ACGTCTGGGA
Statistics
Matches: 78, Mismatches: 14, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
42 23 0.29
43 28 0.36
44 24 0.31
45 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (41 bp):
TCGTGTAAGACCCTATCTGGGACATGGCATCGTATTTGATT
Found at i:75281058 original size:43 final size:42
Alignment explanation
Indices: 75280946--75281061 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 42
75280936 AATTTATGTA
* * * * *
75280946 TAAGACCATGTCTGGGACATCGGCATCGTATTTGATTTCGTG
1 TAAGACCACGTCTGGGACATTGGCATTGTATTTGATTACATG
* * *
75280988 TAAGACC-CTATCTGGGACAATGACATTGATATTTGATTACATG
1 TAAGACCAC-GTCTGGGACATTGGCATTG-TATTTGATTACATG
*
75281031 TAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TAAGACCACGTCTGGGACATTGGCATTGTAT
75281062 GAGCTTTCCG
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
42 24 0.41
43 34 0.58
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATTGGCATTGTATTTGATTACATG
Found at i:75281886 original size:32 final size:32
Alignment explanation
Indices: 75281839--75281902 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
75281829 TATGAAGGAA
*
75281839 ATAGGTTAATTAATATATGATATAAATGATGT
1 ATAGGTTAATGAATATATGATATAAATGATGT
* **
75281871 ATAGGTTGATGAATATATGATATGGATGATGT
1 ATAGGTTAATGAATATATGATATAAATGATGT
75281903 GTGTTTTAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (32 bp):
ATAGGTTAATGAATATATGATATAAATGATGT
Found at i:75285157 original size:89 final size:89
Alignment explanation
Indices: 75284974--75285161 Score: 245
Period size: 89 Copynumber: 2.1 Consensus size: 89
75284964 TAAGTTTCTG
* *
75284974 TTTTTTTTTACACTCAATTCGATACTTGAACTTTCAAAATGTAAAAAAATGGCCCTTAAACTTTT
1 TTTTTTTTTACACTCAATTCGATACTTGAACTGTCAAAATGTAAAAAAA-GGACCTTAAACTTTT
75285039 TCAAGAAAAACAATTAAGCCCCTAC
65 TCAAGAAAAACAATTAAGCCCCTAC
* * * * *
75285064 TTTTTTTTTGCACTCAATTGGGTACTTGAACTGTCAAAATGTATAAAAAA-GACCTTCAATTTTT
1 TTTTTTTTTACACTCAATTCGATACTTGAACTGTCAAAATGTA-AAAAAAGGACCTTAAACTTTT
* * *
75285128 TCAA-AACAAGCAATTAAGCCCTTGC
65 TCAAGAA-AAACAATTAAGCCCCTAC
75285153 TTTTTTTTT
1 TTTTTTTTT
75285162 TTGCATTCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
88 2 0.02
89 39 0.45
90 39 0.45
91 6 0.07
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (89 bp):
TTTTTTTTTACACTCAATTCGATACTTGAACTGTCAAAATGTAAAAAAAGGACCTTAAACTTTTT
CAAGAAAAACAATTAAGCCCCTAC
Found at i:75285162 original size:90 final size:90
Alignment explanation
Indices: 75284974--75285174 Score: 246
Period size: 90 Copynumber: 2.2 Consensus size: 90
75284964 TAAGTTTCTG
* * * *
75284974 TTTTTTTTTACACTCAATTCGATACTTGAACTTTCAAAATGTAAAAAAATGGCCCTTAAACTTTT
1 TTTTTTTTTGCACTCAATTGGATACTTGAACTGTCAAAATGTAAAAAAA-GGACCTTAAACTTTT
75285039 TCAAGAAAAACAATTAAGCCCCTAC-
65 TCAAGAAAAACAATTAAGCCCCTACT
* * *
75285064 TTTTTTTTTGCACTCAATTGGGTACTTGAACTGTCAAAATGTATAAAAAA-GACCTTCAATTTTT
1 TTTTTTTTTGCACTCAATTGGATACTTGAACTGTCAAAATGTA-AAAAAAGGACCTTAAACTTTT
* * *
75285128 TCAA-AACAAGCAATTAAGCCCTTGCTT
65 TCAAGAA-AAACAATTAAGCCCCTAC-T
*
75285155 TTTTTTTTTGCATTCAATTG
1 TTTTTTTTTGCACTCAATTG
75285175 ATAAAATGCA
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
88 2 0.02
89 30 0.31
90 39 0.41
91 25 0.26
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (90 bp):
TTTTTTTTTGCACTCAATTGGATACTTGAACTGTCAAAATGTAAAAAAAGGACCTTAAACTTTTT
CAAGAAAAACAATTAAGCCCCTACT
Found at i:75285336 original size:8 final size:9
Alignment explanation
Indices: 75285298--75285433 Score: 80
Period size: 10 Copynumber: 14.4 Consensus size: 9
75285288 CATGTGACAA
75285298 AAAAATTAT
1 AAAAATTAT
75285307 AAAAA--AT
1 AAAAATTAT
*
75285314 AAAAATCAAT
1 AAAAAT-TAT
75285324 AAAAATTAT
1 AAAAATTAT
75285333 AAAAATTATT
1 AAAAATTA-T
**
75285343 AAACTTTAAT
1 AAAAATT-AT
*
75285353 AAAAATATTT
1 AAAAAT-TAT
*
75285363 AAAATTTAAT
1 AAAAATT-AT
*
75285373 AAAAATTAGA
1 AAAAATTA-T
*
75285383 AAAAAATAT
1 AAAAATTAT
*
75285392 AAAAATTGT
1 AAAAATTAT
*
75285401 -AAAATTTT
1 AAAAATTAT
*
75285409 ATAAAATCATAA
1 A-AAAAT--TAT
75285421 AAAAATTAT
1 AAAAATTAT
75285430 AAAA
1 AAAA
75285434 TGTATCAAAA
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
7 7 0.07
8 7 0.07
9 30 0.31
10 44 0.45
11 7 0.07
12 2 0.02
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:75285386 original size:20 final size:20
Alignment explanation
Indices: 75285311--75285414 Score: 81
Period size: 19 Copynumber: 5.3 Consensus size: 20
75285301 AATTATAAAA
* * *
75285311 AATAAAAATCAATAAAAATT
1 AATAAAAATTAGTAAAATTT
* *
75285331 -ATAAAAATTATTAAACTTT
1 AATAAAAATTAGTAAAATTT
*
75285350 AATAAAAA-TATTTAAAATTT
1 AATAAAAATTA-GTAAAATTT
* **
75285370 AATAAAAATTAGAAAAAAAT
1 AATAAAAATTAGTAAAATTT
75285390 -ATAAAAATT-GTAAAATTT
1 AATAAAAATTAGTAAAATTT
*
75285408 TATAAAA
1 AATAAAA
75285415 TCATAAAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
18 6 0.09
19 32 0.47
20 28 0.41
21 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AATAAAAATTAGTAAAATTT
Found at i:75285778 original size:38 final size:39
Alignment explanation
Indices: 75285727--75285808 Score: 105
Period size: 38 Copynumber: 2.1 Consensus size: 39
75285717 TTTCTATATA
* * *
75285727 TTTTATAATTTTTTTACGTTTTTTATAAAAATTTAC-AAT
1 TTTTATAATTTTTTAAAGATTTTTAT-AAAATTTACTAAT
*
75285766 TTTTATAA-TTTTTAAAGATTTTTATAAAATTTTCTAAT
1 TTTTATAATTTTTTAAAGATTTTTATAAAATTTACTAAT
75285804 TTTTA
1 TTTTA
75285809 ATAAAAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 8 0.21
38 22 0.58
39 8 0.21
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (39 bp):
TTTTATAATTTTTTAAAGATTTTTATAAAATTTACTAAT
Found at i:75285805 original size:19 final size:18
Alignment explanation
Indices: 75285746--75285814 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 18
75285736 TTTTTTACGT
*
75285746 TTTTTATAAAAATTTACAA
1 TTTTTAT-AAAATTTTCAA
* *
75285765 TTTTTAT-AATTTTTAAAGA
1 TTTTTATAAAATTTT-CA-A
75285784 TTTTTATAAAATTTTCTAA
1 TTTTTATAAAATTTTC-AA
75285803 TTTTTAATAAAA
1 TTTTT-ATAAAA
75285815 ATTAAATATT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.12
18 1 0.03
19 21 0.52
20 13 0.32
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (18 bp):
TTTTTATAAAATTTTCAA
Found at i:75289218 original size:16 final size:18
Alignment explanation
Indices: 75289180--75289215 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75289170 TTTTATGTCT
*
75289180 TAAAAATTACATAATATA
1 TAAAAATAACATAATATA
75289198 TAAAAATAACATAATATA
1 TAAAAATAACATAATATA
75289216 AAATGTTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAATAACATAATATA
Found at i:75290270 original size:31 final size:31
Alignment explanation
Indices: 75290235--75290295 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
75290225 TATTTAAATG
*
75290235 TATACAATTGAATCTA-AATTAAAATTTTATA
1 TATACAATTGAA-CCACAATTAAAATTTTATA
*
75290266 TATACATTTGAACCACAATTAAAATTTTAT
1 TATACAATTGAACCACAATTAAAATTTTAT
75290296 TTGTATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (31 bp):
TATACAATTGAACCACAATTAAAATTTTATA
Found at i:75291255 original size:34 final size:34
Alignment explanation
Indices: 75291212--75291279 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
75291202 CAGAAAATAT
75291212 AAAATCAGATGATTAGTTATAAACTACTTTAGAA
1 AAAATCAGATGATTAGTTATAAACTACTTTAGAA
75291246 AAAATCAGATGATTAGTTATAAACTACTTTAGAA
1 AAAATCAGATGATTAGTTATAAACTACTTTAGAA
75291280 GGTCAGAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (34 bp):
AAAATCAGATGATTAGTTATAAACTACTTTAGAA
Found at i:75291549 original size:152 final size:152
Alignment explanation
Indices: 75291261--75292125 Score: 1135
Period size: 152 Copynumber: 5.8 Consensus size: 152
75291251 CAGATGATTA
* * *
75291261 GTTATAAACTACTTTAGAAGGTCAGAAGATATAAAATCAGATGATTAGATCGCCGTTGCCGGGGA
1 GTTATAAATTACTTTAGAAGGTCAGAAAATAT-AAATCAGAGGA-TAGATCGCCGTTGCCGGGGA
75291326 TCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGT
64 TCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGT
75291391 CATAATTCCGAAATTATATTATTT
129 CATAATTCCGAAATTATATTATTT
* ** *
75291415 GTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAAAATAGATCGCCGTTGCCGCGGATC
1 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
*** * * *
75291480 GAACCCGGGTCATAAGCGTGACAGGCGGGAATACTCATCACTATACTACAACGACTTCGGTGTCT
66 GAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCA
*
75291545 TAATTCCAAAATTATATTATTT
131 TAATTCCGAAATTATATTATTT
* * *
75291567 GTTATAAACTACTTTAGAAGGTCAGAAAATACAAATCAGAGGATAGATCGCCGTT-CCGGAGATC
1 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
* * * *
75291631 GAAGCCGGGTCACCCACCTGACAGGCGGGAATACTCACCACTATACTACTACGACTTCGATGTC-
66 GAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCA
* *
75291695 TGTATTCCGAAATTATCGTTATTT
131 T-AATTCCGAAATTAT-ATTATTT
*
75291719 GTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
1 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
*
75291784 GAACCC-GG----CCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACGTCGATGTCA
66 GAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCA
* *
75291844 TAGTTCCAAAATTATATTATTT
131 TAATTCCGAAATTATATTATTT
* *
75291866 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAGTCAGAGGATAGATCGCCGATGCC-GGGATC
1 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
* * * * *
75291930 GAACCCGGATCACCCGCGTGACAGGC--G--TACT---CACTGTACTACAACGACTCCCATGCCA
66 GAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCA
* * *
75291988 TAATTTCGACA-T-TAGTATTT
131 TAATTCCGAAATTATATTATTT
* * **
75292008 CTTATAAATTACTTTAGAAGGTCAGAAAACATAAATCAGAGGATAGATCGCAATTGCCGGGGATC
1 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
** * *
75292073 GAACCCGGGTTGCCCACGTGACAGGC-GG--T--TCACCACCATACTACAACGACTTC
66 GAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTC
75292126 TAGTGTTCAA
Statistics
Matches: 625, Mismatches: 72, Indels: 37
0.85 0.10 0.05
Matches are distributed among these distances:
142 60 0.10
143 29 0.05
144 31 0.05
145 17 0.03
146 12 0.02
147 66 0.11
148 58 0.09
149 2 0.00
150 1 0.00
151 87 0.14
152 211 0.34
153 22 0.04
154 29 0.05
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (152 bp):
GTTATAAATTACTTTAGAAGGTCAGAAAATATAAATCAGAGGATAGATCGCCGTTGCCGGGGATC
GAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCA
TAATTCCGAAATTATATTATTT
Found at i:75291896 original size:299 final size:298
Alignment explanation
Indices: 75291261--75292080 Score: 1160
Period size: 299 Copynumber: 2.7 Consensus size: 298
75291251 CAGATGATTA
*
75291261 GTTATAAACTACTTTAGAAGGTCAGAAGATATAAAATCAGATGATTAGATCGCCGTTGCCGGGGA
1 GTTATAAACTACTTTAGAAGGTCAGAA-A-ATAAAATCAGAGGA-TAGATCGCCGTT-CC-GGGA
75291326 TCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGT
61 TCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGT
* *
75291391 CATAATTCCGAAATTATATTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAA
126 CATAATTCCGAAATTATGTTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAG
* * *
75291456 AATAGATCGCCGTTGCCGCGGATCGAACCCGGGTCATAAGCGTGACAGGCGGGAATACTCATCAC
191 GATAGATCGCCGTTGCCGGGGATCGAACCC-GGTC--AAGCGTGACAGGCGGGAATACTCACCAC
* * *
75291521 TATACTACAACGACTTCGGTGTCTTAATTCCAAAATTATATTATTT
253 TATACTACAACGACGTCGATGTCATAATTCCAAAATTATATTATTT
75291567 GTTATAAACTACTTTAGAAGGTCAGAAAATACAAATCAGAGGATAGATCGCCGTTCCGGAGATCG
1 GTTATAAACTACTTTAGAAGGTCAGAAAATA-AAATCAGAGGATAGATCGCCGTTCCGG-GATCG
* * * *
75291632 AAGCCGGGTCACCCACCTGACAGGCGGGAATACTCACCACTATACTACTACGACTTCGATGTC-T
64 AACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCAT
*
75291696 GTATTCCGAAATTATCGTTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAGG
129 -AATTCCGAAATTAT-GTTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAGG
*
75291761 ATAGATCGCCGTTGCCGGGGATCGAACCCGG-C-CGCGTGACAGGCGGGAATACTCACCACTATA
192 ATAGATCGCCGTTGCCGGGGATCGAACCCGGTCAAGCGTGACAGGCGGGAATACTCACCACTATA
*
75291824 CTACAACGACGTCGATGTCATAGTTCCAAAATTATATTATTT
257 CTACAACGACGTCGATGTCATAATTCCAAAATTATATTATTT
* * *
75291866 GTTATAAATTACTTTAGAAGGTCAGAAAATATAAGTCAGAGGATAGATCGCCGATGCCGGGATCG
1 GTTATAAACTACTTTAGAAGGTCAGAAAATA-AAATCAGAGGATAGATCGCCG-TTCCGGGATCG
* * * * *
75291931 AACCCGGATCACCCGCGTGACAGGC--G--TACT---CACTGTACTACAACGACTCCCATGCCAT
64 AACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCAT
* * * *
75291989 AATTTCGACATTA-G-TATTTCTTATAAATTACTTTAGAAGGTCAGAAAACATAAATCAGAGGAT
129 AATTCCGAAATTATGTTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAGGAT
**
75292052 AGATCGCAATTGCCGGGGATCGAACCCGG
194 AGATCGCCGTTGCCGGGGATCGAACCCGG
75292081 GTTGCCCACG
Statistics
Matches: 472, Mismatches: 36, Indels: 29
0.88 0.07 0.05
Matches are distributed among these distances:
289 74 0.16
290 1 0.00
292 31 0.07
293 1 0.00
295 4 0.01
297 1 0.00
299 143 0.30
300 5 0.01
302 4 0.01
303 81 0.17
304 89 0.19
305 11 0.02
306 27 0.06
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (298 bp):
GTTATAAACTACTTTAGAAGGTCAGAAAATAAAATCAGAGGATAGATCGCCGTTCCGGGATCGAA
CCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACAACGACTTCGATGTCATAA
TTCCGAAATTATGTTATTTGTTATAAATTACTTTAGAAGGTCAGAAAAAATAAATCAGAGGATAG
ATCGCCGTTGCCGGGGATCGAACCCGGTCAAGCGTGACAGGCGGGAATACTCACCACTATACTAC
AACGACGTCGATGTCATAATTCCAAAATTATATTATTT
Found at i:75294449 original size:25 final size:25
Alignment explanation
Indices: 75294419--75294473 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
75294409 ACCATTTCAC
75294419 TTATGATTTATTTTTCAATAATTTT
1 TTATGATTTATTTTTCAATAATTTT
75294444 TTATGATTTATTTTTCAATAATTTT
1 TTATGATTTATTTTTCAATAATTTT
75294469 TTATG
1 TTATG
75294474 TAAAATTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (25 bp):
TTATGATTTATTTTTCAATAATTTT
Found at i:75294481 original size:25 final size:25
Alignment explanation
Indices: 75294419--75294483 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
75294409 ACCATTTCAC
**
75294419 TTATGATTTATTTTTCAATAATTTT
1 TTATGATAAATTTTTCAATAATTTT
**
75294444 TTATGATTTATTTTTCAATAATTTT
1 TTATGATAAATTTTTCAATAATTTT
*
75294469 TTATG-TAAAATTTTC
1 TTATGATAAATTTTTC
75294484 TTTGTTCACA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
24 7 0.19
25 30 0.81
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (25 bp):
TTATGATAAATTTTTCAATAATTTT
Found at i:75295366 original size:19 final size:19
Alignment explanation
Indices: 75295321--75295367 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
75295311 TAAATCTCTG
*
75295321 TTCATATTTGTTTGTTTATT
1 TTCA-ATTTGTTTGTTTATA
* *
75295341 TTAAATTTGTTTGTTTGTA
1 TTCAATTTGTTTGTTTATA
75295360 TTCAATTT
1 TTCAATTT
75295368 ATGTTTGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.19, C:0.04, G:0.11, T:0.66
Consensus pattern (19 bp):
TTCAATTTGTTTGTTTATA
Found at i:75295634 original size:33 final size:33
Alignment explanation
Indices: 75295595--75295662 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
75295585 ATTCGTGAAT
75295595 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
1 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
75295628 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
1 ATAAATGAATTAAACAATCTTTGTTCATGTTCA
75295661 AT
1 AT
75295663 TCGTTCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (33 bp):
ATAAATGAATTAAACAATCTTTGTTCATGTTCA
Found at i:75302890 original size:26 final size:26
Alignment explanation
Indices: 75302861--75302935 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
75302851 TTTAAATTTT
*
75302861 TTAAAAATATTTAATATTTTTAAAAA
1 TTAAAAATAATTAATATTTTTAAAAA
* * *
75302887 TTAAAAATAATTAAAAATTAT-AAAA
1 TTAAAAATAATTAATATTTTTAAAAA
75302912 TTATAAAA-AATTAATATGTTTTAA
1 TTA-AAAATAATTAATAT-TTTTAA
75302936 TTTTTTAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
25 14 0.36
26 24 0.62
27 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (26 bp):
TTAAAAATAATTAATATTTTTAAAAA
Found at i:75302902 original size:17 final size:17
Alignment explanation
Indices: 75302880--75302925 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
75302870 TTTAATATTT
75302880 TTAAAAATTAAAAATAA
1 TTAAAAATTAAAAATAA
*
75302897 TTAAAAATTATAAAATTA
1 TTAAAAATTA-AAAATAA
*
75302915 TAAAAAATTAA
1 TTAAAAATTAA
75302926 TATGTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAAAAATTAAAAATAA
Found at i:75303216 original size:35 final size:35
Alignment explanation
Indices: 75303165--75303239 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
75303155 ACTTTGATTG
*
75303165 AAATAGTCATATAGATGAGTGTAGAATAGGATCAT
1 AAATTGTCATATAGATGAGTGTAGAATAGGATCAT
75303200 AAATTGTCATATAGATGAGTGTAGAATAGGATCAT
1 AAATTGTCATATAGATGAGTGTAGAATAGGATCAT
75303235 AAATT
1 AAATT
75303240 TATCCAAGTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.31
Consensus pattern (35 bp):
AAATTGTCATATAGATGAGTGTAGAATAGGATCAT
Found at i:75304405 original size:21 final size:20
Alignment explanation
Indices: 75304379--75304417 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
75304369 ATGAGTTTTG
75304379 ATATTTGATGATAGATTATGA
1 ATATTTGATGATAG-TTATGA
75304400 ATATTTGATGATAGTTAT
1 ATATTTGATGATAGTTAT
75304418 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
ATATTTGATGATAGTTATGA
Found at i:75306401 original size:33 final size:33
Alignment explanation
Indices: 75306360--75306422 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
75306350 CCATTTCGAA
* *
75306360 TGTCCACACGGCCTGT-GACATGAGCGTGTCTT
1 TGTCCACACGGCATGTCCACATGAGCGTGTCTT
*
75306392 TGTCTCACACGGCATGTCCACATGGGCGTGT
1 TGTC-CACACGGCATGTCCACATGAGCGTGT
75306423 GTACCCTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 4 0.15
33 11 0.42
34 11 0.42
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.27
Consensus pattern (33 bp):
TGTCCACACGGCATGTCCACATGAGCGTGTCTT
Found at i:75307503 original size:5 final size:5
Alignment explanation
Indices: 75307493--75307519 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
75307483 TTAAAATGAA
75307493 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
75307520 CTAATAACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:75307596 original size:9 final size:9
Alignment explanation
Indices: 75307584--75307619 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
75307574 AAAATAATGA
*
75307584 AAAAATAAT
1 AAAAGTAAT
75307593 AAAAGTAAT
1 AAAAGTAAT
75307602 AAAAGTAAT
1 AAAAGTAAT
75307611 AAAAGTAAT
1 AAAAGTAAT
75307620 GAAATCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (9 bp):
AAAAGTAAT
Found at i:75309376 original size:44 final size:43
Alignment explanation
Indices: 75309235--75309709 Score: 224
Period size: 44 Copynumber: 10.6 Consensus size: 43
75309225 GTTCTGACCT
* * * *
75309235 ACTGCAACTTCAGAGGTG-TATA-ATTGTAGCTTTAATCTATTCC
1 ACTGCAACTTCAG-GGAGATA-AGATTGTAACTTCAATCTACTCC
* * * * *
75309278 ACTGCAACTTCAGGGAAATATGATTCGCTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATT-G-TAACTTCAATCTACTCC
*
75309323 ACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGA-TTGTAACTTCAATCTACTCC
* * * * * * *
75309367 ACTGTAACTTCAGAGAGATAAAGTTTATAGCTTTAATCTGCTCTC
1 ACTGCAACTTCAGGGAGAT-AAGATTGTAACTTCAATCTACTC-C
* * * * * *
75309412 -CTGCAACTTTAGAGAGATAAGATTCGCTATC-CCTGATTTACTCC
1 ACTGCAACTTCAGGGAGATAAGATT-G-TAACTTC-AATCTACTCC
* * * * *
75309456 ACTGTAATTTTAGGGAGATAAGA-TATAACTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTGTAACTTCAATCTACTCC
* * * **
75309498 ACTGCAACTTCAAGGAGATCATATTTGTAATTTGTAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGGGAGAT-A-A---G--A-TTGTAACTTCAATCTACTCC
* * * * *
75309549 ACTACAACTTCAAGGCA-ATAAGATTCGCTATCATCAGTCTACTCC
1 ACTGCAACTTC-AGGGAGATAAGATT-G-TAACTTCAATCTACTCC
* * * *
75309594 ACTGCAACTTCAAGGAGATCAGACTTGTTGTAACTTCAACCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGA----TTGTAACTTCAATCTACTCC
* * * ** * *
75309641 ACTGTAACTTCAGGGAGATAAGGTTAATGGCTTCGATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATT-GTAACTTCAATCTACTCC
*
75309685 ACTGCAACTTCAGGGAGATGAGATT
1 ACTGCAACTTCAGGGAGATAAGATT
75309710 TACCACGGTA
Statistics
Matches: 323, Mismatches: 79, Indels: 59
0.70 0.17 0.13
Matches are distributed among these distances:
42 27 0.08
43 29 0.09
44 105 0.33
45 91 0.28
46 3 0.01
47 32 0.10
48 1 0.00
49 4 0.01
50 1 0.00
51 27 0.08
52 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (43 bp):
ACTGCAACTTCAGGGAGATAAGATTGTAACTTCAATCTACTCC
Found at i:75309592 original size:138 final size:130
Alignment explanation
Indices: 75309235--75309661 Score: 371
Period size: 133 Copynumber: 3.2 Consensus size: 130
75309225 GTTCTGACCT
* * * *
75309235 ACTGCAACTTCAGAG-GTGTATAA-TTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAAATA
1 ACTGCAACTTCAGAGAG-ATAAAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGG-AATA
* * *
75309298 TGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAATCTA
64 AGATTCGCTATC-TCAGTCTACTCCACTGCAACTTTAGGGAGATAAGAC-TATAACTTCAATCTA
75309363 CTCC
127 CTCC
* * * * *
75309367 ACTGTAACTTCAGAGAGATAAAGTTTATAGCTTTAATCTGCTCTC-CTGCAACTT-TAGAGAGAT
1 ACTGCAACTTCAGAGAGATAAAATTTGTAGCTTTAATCTGTTC-CACTGCAACTTCAAG-GA-AT
* * * * * *
75309430 AAGATTCGCTATCCCTGATTTACTCCACTGTAATTTTAGGGAGATAAGA-TATAACTTCAATCTG
63 AAGATTCGCTATCTCAG-TCTACTCCACTGCAACTTTAGGGAGATAAGACTATAACTTCAATCTA
75309494 CTCC
127 CTCC
*
75309498 ACTGCAACTTCA-AGGAGATCATATTTGTAATTTGTAGCTTTAATCTGTTCCACTACAACTTCAA
1 ACTGCAACTTCAGA-GAGAT-A-A-----AATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAA
* * * *
75309562 GGCAATAAGATTCGCTATCATCAGTCTACTCCACTGCAACTTCAAGGAGATCAGACTTGTTGTAA
58 GG-AATAAGATTCGCTATC-TCAGTCTACTCCACTGCAACTTTAGGGAGATAAGAC----TATAA
* *
75309627 CTTCAACCTGCTCC
117 CTTCAATCTACTCC
* *
75309641 ACTGTAACTTCAGGGAGATAA
1 ACTGCAACTTCAGAGAGATAA
75309662 GGTTAATGGC
Statistics
Matches: 235, Mismatches: 36, Indels: 39
0.76 0.12 0.13
Matches are distributed among these distances:
130 1 0.00
131 33 0.14
132 22 0.09
133 69 0.29
134 1 0.00
137 1 0.00
138 68 0.29
139 5 0.02
141 1 0.00
142 1 0.00
143 33 0.14
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (130 bp):
ACTGCAACTTCAGAGAGATAAAATTTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAATAAG
ATTCGCTATCTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTATAACTTCAATCTACTCC
Found at i:75316197 original size:33 final size:33
Alignment explanation
Indices: 75316155--75316221 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
75316145 TCCTCTTCTC
75316155 TTTAGATCTCTTATTCGAATCCAGTACAATCAA
1 TTTAGATCTCTTATTCGAATCCAGTACAATCAA
*
75316188 TTTAGATCTCTTCTTCGAATCCAGTACAATCAA
1 TTTAGATCTCTTATTCGAATCCAGTACAATCAA
75316221 T
1 T
75316222 CCTCTTTGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.37
Consensus pattern (33 bp):
TTTAGATCTCTTATTCGAATCCAGTACAATCAA
Found at i:75318931 original size:46 final size:46
Alignment explanation
Indices: 75318881--75319056 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
75318871 TGGTTGAGCA
75318881 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75318927 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75318972 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75319020 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75319057 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75319037 original size:93 final size:93
Alignment explanation
Indices: 75318878--75319049 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
75318868 GGATGGTTGA
*
75318878 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75318943 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75318971 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
75319035 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75319050 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75326500 original size:46 final size:46
Alignment explanation
Indices: 75326450--75326625 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
75326440 TGGTTGAGCA
75326450 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75326496 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75326541 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75326589 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75326626 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75326606 original size:93 final size:93
Alignment explanation
Indices: 75326447--75326618 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
75326437 GGATGGTTGA
*
75326447 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75326512 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75326540 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
75326604 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
75326619 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75341937 original size:47 final size:47
Alignment explanation
Indices: 75341868--75341961 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
75341858 TACTTTTAAC
75341868 ACTTTACCATACATTTTATCATAAATGAGAAAAGGGAACCTACACAT
1 ACTTTACCATACATTTTATCATAAATGAGAAAAGGGAACCTACACAT
*
75341915 ACTTTACCATACATTTTATCATAAATGAGAAAAGGTAACCTACACAT
1 ACTTTACCATACATTTTATCATAAATGAGAAAAGGGAACCTACACAT
75341962 GGATATGCAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (47 bp):
ACTTTACCATACATTTTATCATAAATGAGAAAAGGGAACCTACACAT
Found at i:75342802 original size:55 final size:55
Alignment explanation
Indices: 75342742--75342847 Score: 203
Period size: 55 Copynumber: 1.9 Consensus size: 55
75342732 AAATTAAAAA
*
75342742 GTAATATAAACATATTTTAAATTTTTAAAAATAATATGGATGAGATCTAAATTGG
1 GTAATATAAACATATTTTAAATTTTTAAAAATAATATAGATGAGATCTAAATTGG
75342797 GTAATATAAACATATTTTAAATTTTTAAAAATAATATAGATGAGATCTAAA
1 GTAATATAAACATATTTTAAATTTTTAAAAATAATATAGATGAGATCTAAA
75342848 ATAGGCTTGC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38
Consensus pattern (55 bp):
GTAATATAAACATATTTTAAATTTTTAAAAATAATATAGATGAGATCTAAATTGG
Found at i:75347820 original size:32 final size:32
Alignment explanation
Indices: 75347773--75347851 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
75347763 GTTTACGTCT
* *
75347773 TAAACTTGTC-CAAAAGTATCTAGTT-GATACC
1 TAAACTTGTCAAAAAAGTATCTAATTAG-TACC
*
75347804 TAAACTTGTCAAAAAAGTATCTAATTAGTTCC
1 TAAACTTGTCAAAAAAGTATCTAATTAGTACC
*
75347836 TAAACTCGTCAAAAAA
1 TAAACTTGTCAAAAAA
75347852 AATATTATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 10 0.24
32 31 0.74
33 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (32 bp):
TAAACTTGTCAAAAAAGTATCTAATTAGTACC
Done.