Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 232 of 253
Found at i:75648582 original size:9 final size:9
Alignment explanation
Indices: 75648512--75648582 Score: 62
Period size: 9 Copynumber: 8.3 Consensus size: 9
75648502 ATAGAAAATC
75648512 AAAAGA-AA
1 AAAAGAGAA
*
75648520 AAAACA-AA
1 AAAAGAGAA
75648528 AAACA-AGAA
1 AAA-AGAGAA
*
75648537 AAAAAAGAA
1 AAAAGAGAA
75648546 AAAA-AGAA
1 AAAAGAGAA
*
75648554 AAAAGAGAG
1 AAAAGAGAA
*
75648563 AAGAG-GAA
1 AAAAGAGAA
75648571 AAAAGAGAA
1 AAAAGAGAA
75648580 AAA
1 AAA
75648583 TGGAGAGGCC
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
8 26 0.49
9 27 0.51
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAGAGAA
Found at i:75649805 original size:206 final size:205
Alignment explanation
Indices: 75649450--75649997 Score: 799
Period size: 206 Copynumber: 2.7 Consensus size: 205
75649440 GGCTGAAACA
* *
75649450 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTAGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAA-TCAAGACATAGTTGATTTAGC
* *
75649515 TTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * ** *
75649580 TCGAAGTTTGGCGTCTCCATATTTGACGAAGAGCAGACACATAGCAGATCTGGCCCTCAGATGTT
130 TCGAAGTTTGGCATCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCCTCAGATGAT
*
75649645 TATACTGAAGC
195 TAGACTGAAGC
* * * * *
75649656 AGATCCAAGATGATTTGGCATCCTTATGTTTACAAGGAACAAATCAAAATCATAGTTAATTTAGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGA-CATAGTTGATTTAGC
* *
75649721 TTTCACGTGCTTACGCTGAGGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * *
75649786 TCGAAGTTTGGCATCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTTAGATGAT
130 TCGAAGTTTGGCATCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCCTCAGATGAT
75649851 TAGACTGAAGC
195 TAGACTGAAGC
* * * * *
75649862 ATATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATC-AAGACATAGTTGATTTAGC
** * * *
75649927 TTTTGCGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGGATTGTCAAAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
75649992 TCGAAG
130 TCGAAG
75649998 AAGCAGATTT
Statistics
Matches: 303, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
205 4 0.01
206 296 0.98
207 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCAAGACATAGTTGATTTAGCT
TTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGTTTGGCATCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCCTCAGATGATT
AGACTGAAGC
Found at i:75655813 original size:23 final size:23
Alignment explanation
Indices: 75655769--75655813 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75655759 TACTTTAGCC
*
75655769 ATTTTTATTTTTTCTTTCATTTT
1 ATTTTTATTTTTTCTTTAATTTT
*
75655792 ATTTTTGTTTTTAT-TTTAATTT
1 ATTTTTATTTTT-TCTTTAATTT
75655814 ACTAACTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (23 bp):
ATTTTTATTTTTTCTTTAATTTT
Found at i:75662568 original size:20 final size:19
Alignment explanation
Indices: 75662535--75662582 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
75662525 TTCTTTATTT
75662535 ATTTTATTTTATTTAGTATC
1 ATTTTATTTTATTTAG-ATC
75662555 -TTTTATTATTATTTAGATC
1 ATTTTATT-TTATTTAGATC
75662574 ATTTTATTT
1 ATTTTATTT
75662583 CTTTATTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (19 bp):
ATTTTATTTTATTTAGATC
Found at i:75664276 original size:6 final size:6
Alignment explanation
Indices: 75664261--75664339 Score: 99
Period size: 6 Copynumber: 13.3 Consensus size: 6
75664251 GTCCATTTCA
* *
75664261 TTTA-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATC TTTATC
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
75664308 TTTATC TTTATCT TTT-TG TTTATT TTTATT TT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TT
75664340 ATTAAACTTC
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
5 7 0.10
6 57 0.85
7 3 0.04
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:75670515 original size:10 final size:10
Alignment explanation
Indices: 75670500--75670581 Score: 53
Period size: 10 Copynumber: 8.3 Consensus size: 10
75670490 TAATTTTTTA
75670500 AATAATTATT
1 AATAATTATT
75670510 AATAATTA-T
1 AATAATTATT
*
75670519 AA-AA-TATAA
1 AATAATTAT-T
*
75670528 AAAAATTAATT
1 AATAATT-ATT
*
75670539 AAAAATTATT
1 AATAATTATT
* *
75670549 AAGAATTATA
1 AATAATTATT
* *
75670559 AAGAATTATA
1 AATAATTATT
*
75670569 AATAATGATT
1 AATAATTATT
75670579 AAT
1 AAT
75670582 TTTTATATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
7 2 0.03
8 2 0.03
9 5 0.08
10 41 0.68
11 8 0.13
12 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (10 bp):
AATAATTATT
Found at i:75670842 original size:20 final size:19
Alignment explanation
Indices: 75670817--75670903 Score: 58
Period size: 19 Copynumber: 4.6 Consensus size: 19
75670807 ATTAACATTG
75670817 TTTTTAATAGTTTTAAATAA
1 TTTTTAATA-TTTTAAATAA
* *
75670837 TTTTTAATAATTTAAAAAA
1 TTTTTAATATTTTAAATAA
* **
75670856 ATCATAAT-TTCTTAAA-AA
1 TTTTTAATATT-TTAAATAA
75670874 -TTTTAATAGTTTTTAAAT-A
1 TTTTTAATA--TTTTAAATAA
75670893 TTTTT-ATATTT
1 TTTTTAATATTT
75670904 ATTTCAAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 15
0.70 0.11 0.20
Matches are distributed among these distances:
17 8 0.15
18 3 0.06
19 27 0.51
20 15 0.28
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTTTAATATTTTAAATAA
Found at i:75672015 original size:127 final size:128
Alignment explanation
Indices: 75671829--75672146 Score: 415
Period size: 128 Copynumber: 2.5 Consensus size: 128
75671819 AACAAAAAAC
* * * * *
75671829 TGAAACCCAGCACGGTAGGGCACGATTCCTCGAACTTCTAAACATT-GAACATTTCCTTGTTTTA
1 TGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAAC-TTCAAACATTACCTTGTTTTA
* * * * *
75671893 GAATTT-GAAGAATACGAATGAAATTCTAAAGGAATATTTGATTATTTTGAATAAATGAGAAAT
65 GAATTTAGAAAAACACGAATGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAAT
* * * * *
75671956 TGAAACACAGCACGATAGGGCACGGTTCCCCGAATTTCCAAGCTTCAAACATTGCCTTGTTTTAG
1 TGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACTTCAAACATTACCTTGTTTTAG
* *
75672021 AATTTAGAAAAACACGAGTGAAATTCTAAAGGAATGTTCGATTATTTTGAACAAACGAGAAAT
66 AATTTAGAAAAACACGAATGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAAT
* * * * *
75672084 CGAAACCCAGCACGGTAGGGCACAATTTCCCGAATTTCCAAACATCAAACATTACCTTCTTTT
1 TGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACTTCAAACATTACCTTGTTTT
75672147 TAAGGAATTT
Statistics
Matches: 163, Mismatches: 26, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
126 2 0.01
127 58 0.36
128 103 0.63
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (128 bp):
TGAAACCCAGCACGGTAGGGCACGATTCCCCGAATTTCCAAACTTCAAACATTACCTTGTTTTAG
AATTTAGAAAAACACGAATGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAAT
Found at i:75677335 original size:25 final size:25
Alignment explanation
Indices: 75677309--75677357 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
75677299 AAGGTAACTA
75677309 TTTGATATACAACT-TGTATAGTTTAT
1 TTTGATATA-AA-TGTGTATAGTTTAT
*
75677335 TTTTATATAAATGTGTATAGTTT
1 TTTGATATAAATGTGTATAGTTT
75677358 TTATACAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 12 0.57
26 8 0.38
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.53
Consensus pattern (25 bp):
TTTGATATAAATGTGTATAGTTTAT
Found at i:75678494 original size:23 final size:23
Alignment explanation
Indices: 75678465--75678509 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
75678455 ATGATATTAA
*
75678465 TTAATAAAATTTAGATAATATTT
1 TTAATAAAATTTAGAAAATATTT
*
75678488 TTAATAAAATTTATAAAATATT
1 TTAATAAAATTTAGAAAATATT
75678510 ACCAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TTAATAAAATTTAGAAAATATTT
Found at i:75678505 original size:32 final size:32
Alignment explanation
Indices: 75678463--75678572 Score: 89
Period size: 36 Copynumber: 3.2 Consensus size: 32
75678453 TAATGATATT
*
75678463 AATTAATAAAATTTAGATAATATTTTTAATAA
1 AATTTATAAAATTTAGATAATATTTTTAATAA
*
75678495 AATTTATAAAATATTACCA-ATATATTTTTATATAA
1 AATTTATAAAAT-TTA-GATA-ATATTTTTA-ATAA
**
75678530 AATTTAATTATTTTATTTAGATAATA-TTTTAACTAA
1 AATTT-A-TA--AAATTTAGATAATATTTTTAA-TAA
75678566 AATTTAT
1 AATTTAT
75678573 GATTTTAATT
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
32 11 0.17
33 4 0.06
34 11 0.17
35 11 0.17
36 14 0.22
37 6 0.10
38 4 0.06
39 2 0.03
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (32 bp):
AATTTATAAAATTTAGATAATATTTTTAATAA
Found at i:75678516 original size:23 final size:23
Alignment explanation
Indices: 75678467--75678516 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
75678457 GATATTAATT
* ***
75678467 AATAAAATTTAGATAATATTTTT
1 AATAAAATTTAGAAAATATTACC
*
75678490 AATAAAATTTATAAAATATTACC
1 AATAAAATTTAGAAAATATTACC
75678513 AATA
1 AATA
75678517 TATTTTTATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
AATAAAATTTAGAAAATATTACC
Found at i:75678807 original size:29 final size:28
Alignment explanation
Indices: 75678774--75678835 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 28
75678764 TTAAAAAATA
*
75678774 TATA-TAAATTTTGGTTTAATGTGTAATTT
1 TATAGTAAATTTTGATTT--TGTGTAATTT
75678803 TATATGTAAATTTTGATTTTGTGTAATTT
1 TATA-GTAAATTTTGATTTTGTGTAATTT
75678832 TATA
1 TATA
75678836 CATGATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 18 0.60
31 12 0.40
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (28 bp):
TATAGTAAATTTTGATTTTGTGTAATTT
Found at i:75678807 original size:31 final size:29
Alignment explanation
Indices: 75678772--75678835 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 29
75678762 TCTTAAAAAA
*
75678772 TATATATAAATTTTGGTTTAATGTGTAATTT
1 TATATATAAATTTTGATTT--TGTGTAATTT
*
75678803 TATATGTAAATTTTGATTTTGTGTAATTT
1 TATATATAAATTTTGATTTTGTGTAATTT
75678832 TATA
1 TATA
75678836 CATGATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 14 0.45
31 17 0.55
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (29 bp):
TATATATAAATTTTGATTTTGTGTAATTT
Found at i:75680122 original size:18 final size:18
Alignment explanation
Indices: 75680099--75680136 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
75680089 AATATATATT
75680099 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
75680117 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
75680135 AA
1 AA
75680137 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:75680129 original size:13 final size:13
Alignment explanation
Indices: 75680113--75680137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75680103 CAAGTACCCA
75680113 ACCCAACCCAATT
1 ACCCAACCCAATT
75680126 ACCCAACCCAAT
1 ACCCAACCCAAT
75680138 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:75680173 original size:6 final size:6
Alignment explanation
Indices: 75680162--75680194 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
75680152 ATAATTTAAT
75680162 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
75680195 GCATATAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:75688164 original size:73 final size:72
Alignment explanation
Indices: 75688031--75688208 Score: 277
Period size: 73 Copynumber: 2.5 Consensus size: 72
75688021 GTTTTGTTAT
* *
75688031 TTTTTTGAAGAATTACTAATATTTTATACATATAAAAAAATTAATAACAACGTAATTTAAAGAAT
1 TTTTTTGAAGAATTACTAATATTTT-TACACATAAAAAAATCAATAACAACGTAATTTAAAGAAT
*
75688096 TACTAATA
65 AACTAATA
* *
75688104 TTGTTTTGAAGAATTACTAATATTTTTACACATAAACAAATCAATAACAACGTCATTTAAAGAAT
1 TT-TTTTGAAGAATTACTAATATTTTTACACATAAAAAAATCAATAACAACGTAATTTAAAGAAT
75688169 AACTAAT-
65 AACTAATA
*
75688176 TTTTTTGAAAAATTACTAATATTTTTACACATA
1 TTTTTTGAAGAATTACTAATATTTTTACACATA
75688209 TTTTTCAAAA
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
71 30 0.31
72 2 0.02
73 43 0.44
74 23 0.23
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.39
Consensus pattern (72 bp):
TTTTTTGAAGAATTACTAATATTTTTACACATAAAAAAATCAATAACAACGTAATTTAAAGAATA
ACTAATA
Found at i:75689226 original size:26 final size:26
Alignment explanation
Indices: 75689197--75689247 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
75689187 TCAAACAAAT
75689197 AACCCA-TTTCGATATTTATTTTTGTA
1 AACCCATTTTCGA-ATTTATTTTTGTA
*
75689223 AACCCATTTTGGAATTTATTTTTGT
1 AACCCATTTTCGAATTTATTTTTGT
75689248 GTTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.14, G:0.10, T:0.51
Consensus pattern (26 bp):
AACCCATTTTCGAATTTATTTTTGTA
Found at i:75691510 original size:13 final size:13
Alignment explanation
Indices: 75691488--75691520 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75691478 ACGGGTTTGT
75691488 TTAT-TAAACTAA
1 TTATCTAAACTAA
75691500 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75691513 TTAACTAA
1 TTATCTAA
75691521 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75694435 original size:6 final size:6
Alignment explanation
Indices: 75694416--75694480 Score: 103
Period size: 6 Copynumber: 10.8 Consensus size: 6
75694406 CTTTATAACG
* *
75694416 AAAAAT AAACAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAG
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
75694464 AGAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAA
75694481 GATAAGAGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:75696657 original size:15 final size:15
Alignment explanation
Indices: 75696637--75696671 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
75696627 CAACACGGCC
75696637 GTCTCGCACGGTCGT
1 GTCTCGCACGGTCGT
75696652 GTCTCGCACGGTCGT
1 GTCTCGCACGGTCGT
75696667 GTCTC
1 GTCTC
75696672 TTCCCCTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.06, C:0.34, G:0.31, T:0.29
Consensus pattern (15 bp):
GTCTCGCACGGTCGT
Found at i:75698317 original size:29 final size:29
Alignment explanation
Indices: 75698284--75698347 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
75698274 TAATCCACCA
75698284 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
75698313 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
75698343 CCCAA
1 CCCAA
75698348 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:75698321 original size:30 final size:30
Alignment explanation
Indices: 75698291--75698347 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
75698281 CCACCCAACT
75698291 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
75698320 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
75698348 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:75701581 original size:13 final size:13
Alignment explanation
Indices: 75701559--75701591 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75701549 ATAGATTTTT
75701559 TTAT-TAAACTAA
1 TTATCTAAACTAA
75701571 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75701584 TTAACTAA
1 TTATCTAA
75701592 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75707110 original size:23 final size:23
Alignment explanation
Indices: 75707073--75707129 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
75707063 ATTTTTTTAC
*
75707073 TTTATTCTTTTCTTT-ATTTATG
1 TTTATTATTTTCTTTCATTTATG
*
75707095 TTTGTTTATTTTCTTTCATTTATG
1 TTT-ATTATTTTCTTTCATTTATG
75707119 TTTATTATTTT
1 TTTATTATTTT
75707130 GATTTGGAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 3 0.10
23 17 0.57
24 10 0.33
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (23 bp):
TTTATTATTTTCTTTCATTTATG
Found at i:75709339 original size:39 final size:39
Alignment explanation
Indices: 75709283--75709499 Score: 263
Period size: 39 Copynumber: 5.5 Consensus size: 39
75709273 GCATGATATT
75709283 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGC
* *
75709322 TGGAAATATATCTGGACTTAAGGTCCACAGGCTATATGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGC
* ***
75709361 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGC
* ** * *
75709400 TGAAAATATATCCGGACTTAAGGTTTGTAGGCTGTATGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGC
* * ***
75709439 TGGAATTATAATCCGGACTTAAGGTCCGCAGGTTGCGTGC
1 TGGAAATAT-ATCCGGACTTAAGGTCCGCAGGCTATATGC
* *
75709479 TGAAAATATATCCGGGCTTAA
1 TGGAAATATATCCGGACTTAA
75709500 AGTTCCGAAG
Statistics
Matches: 151, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 120 0.79
40 31 0.21
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (39 bp):
TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGC
Found at i:75709483 original size:79 final size:78
Alignment explanation
Indices: 75709283--75709499 Score: 308
Period size: 78 Copynumber: 2.8 Consensus size: 78
75709273 GCATGATATT
* *** * *
75709283 TGGAAATATATCCGGACTTAAGGTCCGCAGGCTATATGCTGGAAATATATCTGGACTTAAGGTCC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGAAAATATATCCGGACTTAAGGTCC
75709348 ACAGGCTATATGC
66 ACAGGCTATATGC
**
75709361 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGAAAATATATCCGGACTTAAGGTTT
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGAAAATATATCCGGACTTAAGGTCC
** *
75709426 GTAGGCTGTATGC
66 ACAGGCTATATGC
* *
75709439 TGGAATTATAATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGAAAATATATCCGGGCTTAA
1 TGGAAATAT-ATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGAAAATATATCCGGACTTAA
75709500 AGTTCCGAAG
Statistics
Matches: 125, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 75 0.60
79 50 0.40
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (78 bp):
TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGAAAATATATCCGGACTTAAGGTCC
ACAGGCTATATGC
Found at i:75717094 original size:39 final size:39
Alignment explanation
Indices: 75717037--75717253 Score: 227
Period size: 39 Copynumber: 5.5 Consensus size: 39
75717027 GCATGATATT
* *
75717037 TGGAAATATATCCAGACTTAAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTATATGC
* * *
75717076 TGGAAATATATCCGGACTTAAGGTCCGTAAGCTATATGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTATATGC
* * ***
75717115 TGGAAATATATCTGGACTTAAGGTCCGCAAGTTGCGTGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTATATGC
** * **
75717154 TAAAAATATCTCCGGACTTAAGGTTTGCAGGTTATATGC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTATATGC
* ** ***
75717193 TGGAATTATAATCCGGACTTAAGGTCTACAGGTTGCGTGC
1 TGGAAATAT-ATCCGGACTTAAGGTCCGCAGGTTATATGC
*
75717233 TGGAAATATATCCGGGCTTAA
1 TGGAAATATATCCGGACTTAA
75717254 AGTTCCGAAG
Statistics
Matches: 147, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 115 0.78
40 32 0.22
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (39 bp):
TGGAAATATATCCGGACTTAAGGTCCGCAGGTTATATGC
Found at i:75717168 original size:78 final size:78
Alignment explanation
Indices: 75717037--75717253 Score: 254
Period size: 78 Copynumber: 2.8 Consensus size: 78
75717027 GCATGATATT
* * ***
75717037 TGGAAATATATCCAGACTTAAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACTTAAGGTCC
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGGAAATATATCCGGACTTAAGGTCC
*
75717102 GTAAGCTATATGC
66 GCAAGCTATATGC
* * ** * **
75717115 TGGAAATATATCTGGACTTAAGGTCCGCAAGTTGCGTGCTAAAAATATCTCCGGACTTAAGGTTT
1 TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGGAAATATATCCGGACTTAAGGTCC
* *
75717180 GCAGGTTATATGC
66 GCAAGCTATATGC
* ** *
75717193 TGGAATTATAATCCGGACTTAAGGTCTACAGGTTGCGTGCTGGAAATATATCCGGGCTTAA
1 TGGAAATAT-ATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGGAAATATATCCGGACTTAA
75717254 AGTTCCGAAG
Statistics
Matches: 114, Mismatches: 24, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
78 71 0.62
79 43 0.38
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (78 bp):
TGGAAATATATCCGGACTTAAGGTCCGCAGGTTGCGTGCTGGAAATATATCCGGACTTAAGGTCC
GCAAGCTATATGC
Found at i:75719057 original size:20 final size:20
Alignment explanation
Indices: 75719032--75719080 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
75719022 TTCGGCCTTT
75719032 TCGACACTCCAAAGATGTCA
1 TCGACACTCCAAAGATGTCA
75719052 TCGACACTCCAAAGATGTCA
1 TCGACACTCCAAAGATGTCA
*
75719072 TCAACACTC
1 TCGACACTC
75719081 ATATTAGTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.33, G:0.12, T:0.20
Consensus pattern (20 bp):
TCGACACTCCAAAGATGTCA
Found at i:75725282 original size:27 final size:26
Alignment explanation
Indices: 75725233--75725313 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
75725223 TTTTTGAAAT
* **
75725233 TTTACCGAGAGTAAAATCATCAAAAAA
1 TTTA-CGAGGGTAAAATTGTCAAAAAA
*
75725260 TTTATCGAGGGTAAAATTGTC-AAAAT
1 TTTA-CGAGGGTAAAATTGTCAAAAAA
75725286 TTTACTG-GGGTAAAATTGTCAAAAAA
1 TTTAC-GAGGGTAAAATTGTCAAAAAA
75725312 TT
1 TT
75725314 GGGATGAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
25 14 0.30
26 15 0.33
27 17 0.37
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (26 bp):
TTTACGAGGGTAAAATTGTCAAAAAA
Found at i:75727781 original size:23 final size:23
Alignment explanation
Indices: 75727755--75727798 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
75727745 AGTATTATTA
* * *
75727755 ATGATTACTTAATTTAATTAAAC
1 ATGATTAATTAAGTAAATTAAAC
75727778 ATGATTAATTAAGTAAATTAA
1 ATGATTAATTAAGTAAATTAA
75727799 GGTTTAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (23 bp):
ATGATTAATTAAGTAAATTAAAC
Found at i:75730069 original size:17 final size:17
Alignment explanation
Indices: 75730049--75730126 Score: 70
Period size: 17 Copynumber: 4.4 Consensus size: 17
75730039 ATTTTAATAG
75730049 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTTA
**
75730066 ATTTAAGTATTTTA-TTA
1 ATTTAA-TATTAAATTTA
*
75730083 AATTAATATTAAAGTGATT-
1 ATTTAATATTAAA-T--TTA
75730102 ATCTTAATATTAAATTTA
1 AT-TTAATATTAAATTTA
75730120 ATTTAAT
1 ATTTAAT
75730127 GTTTATCTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
16 5 0.10
17 21 0.44
18 7 0.15
19 2 0.04
20 13 0.27
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:75730219 original size:59 final size:62
Alignment explanation
Indices: 75730105--75730219 Score: 173
Period size: 62 Copynumber: 1.9 Consensus size: 62
75730095 AGTGATTATC
* * * *
75730105 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTTTATTAATTTAATAAGAT
1 TTAAGATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATATTAATTTAATAAGAT
75730167 TTAAGATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAA
1 TTAAGATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATATTAATTTAA
75730220 GGGTTAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 21 0.43
60 1 0.02
61 1 0.02
62 26 0.53
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (62 bp):
TTAAGATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATATTAATTTAATAAGAT
Found at i:75730470 original size:16 final size:15
Alignment explanation
Indices: 75730445--75730478 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
75730435 TTTCCTATTA
75730445 TCTTCCCTTTTTCTTT
1 TCTTCCC-TTTTCTTT
*
75730461 TCTTCTCTTTTCTTT
1 TCTTCCCTTTTCTTT
75730476 TCT
1 TCT
75730479 GGTTCTACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTTCCCTTTTCTTT
Found at i:75731318 original size:21 final size:21
Alignment explanation
Indices: 75731294--75731333 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
75731284 TGTGAAAGGA
75731294 AAAAATGAAA-AAAAAAAGAGG
1 AAAAA-GAAAGAAAAAAAGAGG
*
75731315 AAAAAGAAAGAAAGAAAGA
1 AAAAAGAAAGAAAAAAAGA
75731334 AAAAGAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.03
Consensus pattern (21 bp):
AAAAAGAAAGAAAAAAAGAGG
Found at i:75736806 original size:73 final size:73
Alignment explanation
Indices: 75736705--75736937 Score: 331
Period size: 73 Copynumber: 3.2 Consensus size: 73
75736695 GTGCTTAATG
* * * * *
75736705 AAAAGAAAGTATAAGTAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGA
1 AAAACAAA-TATAAGTAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAACAAATAAA
* *
75736770 TAGATAGAT
65 TAAATCGAT
* * * *
75736779 AAAACTAATATACGTAATATTAAATTTAAGTATTTAAGAAGTAAAAGAATATTAAACAAATAAAT
1 AAAACAAATATAAGTAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAACAAATAAAT
75736844 AAATCGAT
66 AAATCGAT
* * *
75736852 AAAACAAATATAAATAATATTAAATTTAAGTGTTTAAAAAGTAAAAGAATAATAAACGAATAAAT
1 AAAACAAATATAAGTAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAACAAATAAAT
75736917 AAATCGAT
66 AAATCGAT
75736925 AAAACAAATATAA
1 AAAACAAATATAA
75736938 AAGATGAAAT
Statistics
Matches: 141, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
73 135 0.96
74 6 0.04
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (73 bp):
AAAACAAATATAAGTAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAACAAATAAAT
AAATCGAT
Found at i:75738149 original size:7 final size:7
Alignment explanation
Indices: 75738137--75738178 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
75738127 TGAACCGTTT
75738137 TTTATTA
1 TTTATTA
75738144 TTTATTA
1 TTTATTA
75738151 TTTATTA
1 TTTATTA
75738158 -TT-TTA
1 TTTATTA
*
75738163 GTT-TTA
1 TTTATTA
75738169 TTTATTA
1 TTTATTA
75738176 TTT
1 TTT
75738179 TTTAGTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 3 0.09
6 9 0.28
7 20 0.62
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:75738169 original size:21 final size:21
Alignment explanation
Indices: 75738134--75738189 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
75738124 ACTTGAACCG
*
75738134 TTTTTTATTATTTA-TTATTTA
1 TTTTTTAGTATTTATTTA-TTA
75738155 TTATTTTAGT-TTTATTTATTA
1 TT-TTTTAGTATTTATTTATTA
75738176 TTTTTTAGTATTTA
1 TTTTTTAGTATTTA
75738190 GGTTTCGAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 7 0.23
21 15 0.48
22 9 0.29
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTTTTAGTATTTATTTATTA
Found at i:75740738 original size:14 final size:15
Alignment explanation
Indices: 75740709--75740764 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
75740699 TAAACACACC
*
75740709 CTTAGTTTTTCAATA
1 CTTAATTTTTCAATA
75740724 CTTAATTTTTC-ATA
1 CTTAATTTTTCAATA
*
75740738 CTTCAA-TTTTCAACA
1 CTT-AATTTTTCAATA
75740753 CTTAATTTTTCA
1 CTTAATTTTTCA
75740765 CTTTATCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 13 0.36
15 23 0.64
ACGTcount: A:0.29, C:0.18, G:0.02, T:0.52
Consensus pattern (15 bp):
CTTAATTTTTCAATA
Found at i:75741528 original size:17 final size:17
Alignment explanation
Indices: 75741506--75741540 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75741496 AAACAATCTT
75741506 CCTTTTATATAAACTTA
1 CCTTTTATATAAACTTA
75741523 CCTTTTATATAAACTTA
1 CCTTTTATATAAACTTA
75741540 C
1 C
75741541 ATTGATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (17 bp):
CCTTTTATATAAACTTA
Found at i:75741550 original size:16 final size:17
Alignment explanation
Indices: 75741512--75741551 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
75741502 TCTTCCTTTT
* *
75741512 ATATAAACTTACCTTTT
1 ATATAAACTTACCATTG
75741529 ATATAAACTTA-CATTG
1 ATATAAACTTACCATTG
75741545 ATATAAA
1 ATATAAA
75741552 TATTTTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (17 bp):
ATATAAACTTACCATTG
Found at i:75745301 original size:22 final size:21
Alignment explanation
Indices: 75745270--75745310 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
75745260 ATTAGGGCTA
75745270 AATTAAAAATAAATAAAAATGG
1 AATTAAAAAT-AATAAAAATGG
* *
75745292 AATTATAAATATTAAAAAT
1 AATTAAAAATAATAAAAAT
75745311 ACAAGAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AATTAAAAATAATAAAAATGG
Found at i:75750452 original size:13 final size:13
Alignment explanation
Indices: 75750426--75750466 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
75750416 ACTAGAGGCT
75750426 TAACAAAAAT-GA
1 TAACAAAAATGGA
75750438 TAACAAAAATGGA
1 TAACAAAAATGGA
* *
75750451 TAATAGAAATGG-
1 TAACAAAAATGGA
75750463 TAAC
1 TAAC
75750467 TACTCATAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.20
Consensus pattern (13 bp):
TAACAAAAATGGA
Found at i:75753915 original size:37 final size:37
Alignment explanation
Indices: 75753828--75753915 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
75753818 TGTGACACAA
** * * *
75753828 GTTTAGCTTGGATGAGTAACTTGATGTCCTTTTTTAG
1 GTTTAGCTAAGATGAGTAAATTGATGTCATTTTATAG
* * *
75753865 GTTCAGTTCAGATGAGTAAATTGATGTCATTTTATAG
1 GTTTAGCTAAGATGAGTAAATTGATGTCATTTTATAG
75753902 GTTTAGCTAAGATG
1 GTTTAGCTAAGATG
75753916 GCTAAACTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.09, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTTAGCTAAGATGAGTAAATTGATGTCATTTTATAG
Found at i:75758459 original size:14 final size:15
Alignment explanation
Indices: 75758435--75758469 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
75758425 TATATATATT
75758435 ACCATATAAATACTA
1 ACCATATAAATACTA
75758450 ACCATA-AAATACTA
1 ACCATATAAATACTA
75758464 ATCCAT
1 A-CCAT
75758470 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:75759166 original size:41 final size:41
Alignment explanation
Indices: 75759115--75759315 Score: 172
Period size: 41 Copynumber: 4.9 Consensus size: 41
75759105 AATTTATAAA
* * **
75759115 ACATAGAGCCCTATATAAAACACCGGCATAAAGCCTGCTAG
1 ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTGCTAG
* * * *
75759156 GCACAAAGCCCGAT-TCATTTCACCGGCACAAAGCCTGCTAG
1 ACATAAAGCCCGATAT-AATTCACCGGCATAAAGCCTGCTAG
* * *
75759197 ACATAAAGTCGGA-ATTAATTCACCGGCATCAAGCCTGCTAG
1 ACATAAAGCCCGATA-TAATTCACCGGCATAAAGCCTGCTAG
* ** * *
75759238 ACATAAAGTCTAAAATAATTCACCGGCATCAAGCCTGCTAG
1 ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTGCTAG
* * * * * *
75759279 GCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTG
1 ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTG
75759316 AAAATCTCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.01
41 131 0.98
42 2 0.01
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (41 bp):
ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTGCTAG
Found at i:75759551 original size:64 final size:63
Alignment explanation
Indices: 75759433--75759613 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 63
75759423 GCAAACAAAC
*
75759433 ATTCGAACCACATATGT-AT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTAATAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
75759494 T
63 T
75759495 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAA-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
75759559 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCGAACCACATATGTA-ATAAAATTCATACATTAAATTCAGCTCAAGAACTTT
75759614 AAATATATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
62 17 0.15
63 6 0.05
64 77 0.70
65 10 0.09
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (63 bp):
ATTCGAACCACATATGTAATAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:75764904 original size:14 final size:15
Alignment explanation
Indices: 75764880--75764914 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
75764870 TATATATATT
75764880 ACCATATAAATACTA
1 ACCATATAAATACTA
75764895 ACCATA-AAATACTA
1 ACCATATAAATACTA
75764909 ATCCAT
1 A-CCAT
75764915 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:75765610 original size:41 final size:41
Alignment explanation
Indices: 75765559--75765759 Score: 172
Period size: 41 Copynumber: 4.9 Consensus size: 41
75765549 AATTTATAAA
* * **
75765559 ACATAGAGCCCTATATAAAACACCGGCATAAAGCCTGCTAG
1 ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTGCTAG
* * * *
75765600 GCACAAAGCCCGAT-TCATTTCACCGGCACAAAGCCTGCTAG
1 ACATAAAGCCCGATAT-AATTCACCGGCATAAAGCCTGCTAG
* * *
75765641 ACATAAAGTCGGA-ATTAATTCACCGGCATCAAGCCTGCTAG
1 ACATAAAGCCCGATA-TAATTCACCGGCATAAAGCCTGCTAG
* ** * *
75765682 ACATAAAGTCTAAAATAATTCACCGGCATCAAGCCTGCTAG
1 ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTGCTAG
* * * * * *
75765723 GCATTAAGCCTGAAATAATCCACCGGCATCAAGCCTG
1 ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTG
75765760 AAAATCTCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.01
41 131 0.98
42 2 0.01
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (41 bp):
ACATAAAGCCCGATATAATTCACCGGCATAAAGCCTGCTAG
Found at i:75765995 original size:64 final size:63
Alignment explanation
Indices: 75765877--75766057 Score: 262
Period size: 64 Copynumber: 2.9 Consensus size: 63
75765867 GCAAACAAAC
*
75765877 ATTCGAACCACATATGT-AT-AATTTACA-ACATTAAAATTCAGCTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTAATAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
75765938 T
63 T
75765939 ATTCGAACCACATATGTAAGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAA-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
75766003 ATTTGAACCACATATGTATATAAAATTCATACATTAAATACAGCTCAAGAACTTT
1 ATTCGAACCACATATGTA-ATAAAATTCATACATTAAATTCAGCTCAAGAACTTT
75766058 AAATATATAT
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
62 17 0.15
63 6 0.05
64 77 0.70
65 10 0.09
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (63 bp):
ATTCGAACCACATATGTAATAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:75775572 original size:254 final size:254
Alignment explanation
Indices: 75775123--75775629 Score: 852
Period size: 254 Copynumber: 2.0 Consensus size: 254
75775113 CAACTGTAGT
* *
75775123 TCAACATGTGTTTTGAAACACAATAAGGCTTGCAATGCATCAAACTTTTTCTTAAGAAAATTAAT
1 TCAACATGTGTTTTGAAACACAAAAAGGCTTGCAATGCATCAAACTTTTGCTTAAGAAAATTAAT
*
75775188 CCAAGTATGAATTAAAAATGAATCCACAAAGGAGATATAGTATTAATAGCCTGAAGAGTAACAAG
66 CCAAGTATGAATTAAAAATGAATCCACAAAGGAGATATAGTATTAATAGCCTGAAAAGTAACAAG
* * * * * *
75775253 GGGCTAGACCCCACAAGTCAGTAACAATGAACTCAAGAGGAGCATAGTACACTGATTTAATGGAC
131 AGGCCAAACCCCACAAGTCAATAAAAATGAACTCAAGAGGAGCAAAGTACACTGATTTAATGGAC
*
75775318 ATAAATGGCAGTTTGTGGCTTTTGCCAAGCTCACAAGCATTACACAAAGAGAATGACTA
196 ATAAATGGCAGTTTGTGGCTTTTACCAAGCTCACAAGCATTACACAAAGAGAATGACTA
*
75775377 TCAACATGTGTTTTGAAAGACAAAAAGGCTTGCAATGCATCAAACTTTTGCTTAAGAAAATTAAT
1 TCAACATGTGTTTTGAAACACAAAAAGGCTTGCAATGCATCAAACTTTTGCTTAAGAAAATTAAT
* * *
75775442 CCAAGTATGAATTGAAAATGTATCCACAAAGGAGATATAGTATTGATAGCCTGAAAAGTAACAAG
66 CCAAGTATGAATTAAAAATGAATCCACAAAGGAGATATAGTATTAATAGCCTGAAAAGTAACAAG
* * *
75775507 AGGCCAAACCCTATAAGTTAATAAAAATGAACTCAAGAGGAGCAAAGTACACTGATTTAATGGAC
131 AGGCCAAACCCCACAAGTCAATAAAAATGAACTCAAGAGGAGCAAAGTACACTGATTTAATGGAC
*
75775572 ATATATGGCAGTTTGTGGCTTTTACCAAGCTCACAAGCATTACACAAAGAGAATGACT
196 ATAAATGGCAGTTTGTGGCTTTTACCAAGCTCACAAGCATTACACAAAGAGAATGACT
75775630 TATTTTTGGG
Statistics
Matches: 235, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
254 235 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (254 bp):
TCAACATGTGTTTTGAAACACAAAAAGGCTTGCAATGCATCAAACTTTTGCTTAAGAAAATTAAT
CCAAGTATGAATTAAAAATGAATCCACAAAGGAGATATAGTATTAATAGCCTGAAAAGTAACAAG
AGGCCAAACCCCACAAGTCAATAAAAATGAACTCAAGAGGAGCAAAGTACACTGATTTAATGGAC
ATAAATGGCAGTTTGTGGCTTTTACCAAGCTCACAAGCATTACACAAAGAGAATGACTA
Found at i:75778978 original size:622 final size:614
Alignment explanation
Indices: 75777220--75779027 Score: 2282
Period size: 614 Copynumber: 2.9 Consensus size: 614
75777210 ACAATAAATT
* *
75777220 ACTATCATCTATAAGAATTCCCACTTTTTGAGAAGCAAAGGTAAGGGGTTTGAAGAACTTTCCAT
1 ACTATCATCTACAAGAATTCCCACTTTTTGAGAAGCAAAGGTAAGGGGATTGAAGAAC-TTCCAT
* * * *
75777285 TTGTTGATTTTA-CTGAGACTACAGAACCCATGATTGAAGCAATGATCAACAAAAAAAATAACTT
65 TTGTTGATTTTATC-GAGACTGCAGAATCCATGATTGAAGCAACGATCAA-AAAAAAAATAGCTT
* *
75777349 TGATACCATACTAGAAATATAAAAGAAAAAGAGTAATTCATTAATCATACTCTTAAAATACAAGG
128 TGATACCATACTAGAAATAT-AGAGAAGAAGAGTAATTCATTAATCATACTCTTAAAATACAAGG
* * * * *
75777414 GCCTTTGTGTATTTATACACTAGAGGCTTAATAAAAGTTATAACAAAAATGGATAACATAAATGG
192 GCC-TTGTGTATTTATACACTGGAGGCTTAATAGAAGTGATAACAAAAATGGATAATAGAAATGG
**
75777479 AAACTACTCATAACTAGATTTAGTTGAGCCTAACTTACAACAATTGTCTAGTTACTTTTTCTAAT
256 AAACTACTCATAACTAGATTTAGTTGAGCCTAACTT---ACAA--GT-TAGTTACTTCCTCTAAT
* * * *
75777544 ATTCCATAAGTACAAGTAGGGAAACCAAGTAGCTAATAGTATGGTTGCCTTTGTTGGAAATCTCC
315 ATTCCATAGGTACAAGAAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCTCC
* *
75777609 CTTTACGCCTTCATGTTTATGCACCTCCCTATGACTTTATTTTAAAAGGCTCTATATGATGATTG
380 CTTTACGCCTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTG
* * * *
75777674 CAGCATGGTTTTGCCTAGATTAGTTACTATGTAATTTTTTTATTTTCCCCA-TTT---AAAAA-A
445 TAGCATGGTTTTGCCTAGATTAGTTACTATGTAATTATTCTATTTCCCCCATTTTAAAAAAAATA
** * * * *
75777734 AATTCAA-TGGCTGAAATGCAATCAATCATAAAAAAAAATTGAGA-ATTTTTTTTTTGGTGTAAA
510 AATTCAACT-ATTGAAATGCATTCAATCATACAAAAAAATTGATACA-TTTTCTTTTGGTGTAAA
* * *
75777797 TTCAATGTGTTTGGAAGTTACATTTAACTTGAGACGTAAGTT
573 TTCAATGTGTTTGGAAGTTACATTCAACTTGAGACGCAAGTA
* * * *
75777839 ACTATCATCTACCAGAATTTCCACTTTTTGAGAAGCAAAGGCAAGGGGATTGGAGAA----C-TT
1 ACTATCATCTACAAGAATTCCCACTTTTTGAGAAGCAAAGGTAAGGGGATTGAAGAACTTCCATT
* * * * ** *
75777899 TGTTAATTTTGTCGAGACTGTAAAATCCATGATTGAAGCAACGATTGACAAAAAAATAGCTTTGA
66 TGTTGATTTTATCGAGACTGCAGAATCCATGATTGAAGCAACGATCAAAAAAAAAATAGCTTTGA
* * *
75777964 TACCATACTAGAAATATAGTAGAAGAAGAGTAATTCATTAATAATACTCTTAGAATACAGGGGAG
131 TACCATACTAGAAATATAG-AGAAGAAGAGTAATTCATTAATCATACTCTTAAAATACA-AGG-G
*
75778029 CCCTTGTGTATTTATACACTGAAGGCTTAATAGAAGTGATAACAAAAATGGATAATAGAAATGGA
193 -CCTTGTGTATTTATACACTGGAGGCTTAATAGAAGTGATAACAAAAATGGATAATAGAAATGGA
* *
75778094 AACTAATCATAACTACATTTAGTTGAGCCTAACTTACAGAAGTTATCTAGTTACTTCCTCTAATA
257 AACTACTCATAACTAGATTTAGTTGAGCCTAACTTAC--AAG---T-TAGTTACTTCCTCTAATA
* * * * * *
75778159 TTTCATAGGTATAAAAAGGGGAACCAAGTAGCTAATAACATGGTTGTCTTTGATGGAAATCTCCC
316 TTCCATAGGTACAAGAAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCTCCC
* * *
75778224 TTTACGCCTTCATTTTTATTCATCTTTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGT
381 TTTACGCCTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGT
* ** * * **
75778289 AGCACGACTTTGCCTAGATTAGTTATTGTGTAATTATTCTATTTTCCCTCTTTTTTAAAAAAAAT
446 AGCATGGTTTTGCCTAGATTAGTTACTATGTAATTATTCTA-TTTCCC-CCATTTTAAAAAAAAT
75778354 AAATTCAACTATTGAAATGCATTCAATCATACAAAAAAATTTGATACATTTTCTTTTGGTGTAAA
509 AAATTCAACTATTGAAATGCATTCAATCATACAAAAAAA-TTGATACATTTTCTTTTGGTGTAAA
75778419 TTCAA-GATGTTTGGAAGTTACATTCAACTTGAGACGCAAGTA
573 TTCAATG-TGTTTGGAAGTTACATTCAACTTGAGACGCAAGTA
* * *
75778461 ACTATCATTTACAAGAATTGCCACTTTTTGAGAAGCAAATGTAAGGGGATTGAAGAACTTCCCAT
1 ACTATCATCTACAAGAATTCCCACTTTTTGAGAAGCAAAGGTAAGGGGATTGAAGAACTT-CCAT
* * * * *
75778526 TTGTCGATTCTATCGATACTGCAGAATCCATGATTGAAGCAACGATCAATAAAAAAGTAGCTTTG
65 TTGTTGATTTTATCGAGACTGCAGAATCCATGATTGAAGCAACGATCAAAAAAAAAATAGCTTTG
* *
75778591 ATACCATACTAAAAATATAGAGTGAGAAGAGTAATTCATTAATCATACTCTTAAAATACAAGGGC
130 ATACCATACTAGAAATATAGAG-AAGAAGAGTAATTCATTAATCATACTCTTAAAATACAAGGGC
* * *
75778656 CTTGTGTATTTATACACTGGAGGCTTAACAGAAGCGATAACAAAAATGGATAATAGAAATGGGAA
194 CTTGTGTATTTATACACTGGAGGCTTAATAGAAGTGATAACAAAAATGGATAATAGAAATGGAAA
*
75778721 CTACTCATAACTAGATTTAGTTGAGCCTAACTTAC-AG-TAGTT-CTTCCTCTACTATTCCATAG
259 CTACTCATAACTAGATTTAGTTGAGCCTAACTTACAAGTTAGTTACTTCCTCTAATATTCCATAG
* * * * * *
75778783 GTACAAGGAGGGGAGCCAAGTAGCTAATAGCATAGTTGCCTGTGTTGGAAATCTCCTTTTATGCC
324 GTACAAGAAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCTCCCTTTACGCC
* *
75778848 TTCATGTTTATGCATCTCTCTATGACTTCATTTTAAAAGGCTCTATAAGATGATTGTAGCATGGT
389 TTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGGT
* *
75778913 TTTACCTAGATTAGTTACTATGTAATTACTCTATTCCCCCTCCCCCCACCTTTTAAAAAAAATAA
454 TTTGCCTAGATTAGTTACTATGTAATTATTCTATT-----T-CCCCCA--TTTTAAAAAAAATAA
* * * * * *
75778978 ATTCAACAATTGCAATGTAATGCTATCATACAAAAGAATTGATACATTTT
511 ATTCAACTATTGAAATG-CATTCAATCATACAAAAAAATTGATACATTTT
75779028 TTCCTCTTCA
Statistics
Matches: 1024, Mismatches: 128, Indels: 71
0.84 0.10 0.06
Matches are distributed among these distances:
611 4 0.00
612 68 0.07
613 43 0.04
614 258 0.25
615 9 0.01
616 159 0.16
617 8 0.01
619 51 0.05
620 7 0.01
621 37 0.04
622 154 0.15
623 17 0.02
625 95 0.09
626 1 0.00
627 5 0.00
628 108 0.11
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (614 bp):
ACTATCATCTACAAGAATTCCCACTTTTTGAGAAGCAAAGGTAAGGGGATTGAAGAACTTCCATT
TGTTGATTTTATCGAGACTGCAGAATCCATGATTGAAGCAACGATCAAAAAAAAAATAGCTTTGA
TACCATACTAGAAATATAGAGAAGAAGAGTAATTCATTAATCATACTCTTAAAATACAAGGGCCT
TGTGTATTTATACACTGGAGGCTTAATAGAAGTGATAACAAAAATGGATAATAGAAATGGAAACT
ACTCATAACTAGATTTAGTTGAGCCTAACTTACAAGTTAGTTACTTCCTCTAATATTCCATAGGT
ACAAGAAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCTCCCTTTACGCCTT
CATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGGTTT
TGCCTAGATTAGTTACTATGTAATTATTCTATTTCCCCCATTTTAAAAAAAATAAATTCAACTAT
TGAAATGCATTCAATCATACAAAAAAATTGATACATTTTCTTTTGGTGTAAATTCAATGTGTTTG
GAAGTTACATTCAACTTGAGACGCAAGTA
Found at i:75781859 original size:47 final size:47
Alignment explanation
Indices: 75781805--75781943 Score: 215
Period size: 47 Copynumber: 3.0 Consensus size: 47
75781795 TTAGGATTTT
** *
75781805 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
75781852 ATGTGATGAATGTGAACATGCATGTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75781899 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
75781944 TATGTGAAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75782002 original size:48 final size:48
Alignment explanation
Indices: 75781909--75782246 Score: 599
Period size: 48 Copynumber: 7.0 Consensus size: 48
75781899 ATGTGATGAA
75781909 TATGA-ACATGCATATATGTGGTAAAGCCGAATGGCTA-TGTGAAATATG
1 TATGAGACATGC--ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
75781957 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
75782005 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* *
75782053 TATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
75782101 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
*
75782149 TATGAGATATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* *
75782197 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
75782245 TA
1 TA
75782247 GGCGATGTGC
Statistics
Matches: 282, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 24 0.09
48 252 0.89
49 6 0.02
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (48 bp):
TATGAGACATGCATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
Found at i:75782501 original size:37 final size:37
Alignment explanation
Indices: 75782393--75782501 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
75782383 GGAAATATAT
*
75782393 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75782430 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
75782467 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
75782502 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:75783430 original size:18 final size:19
Alignment explanation
Indices: 75783382--75783429 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
75783372 AGTATTCCCT
75783382 TATAATTTTTTATGCATCC
1 TATAATTTTTTATGCATCC
*
75783401 TCATAATTTTTTATGCTTCC
1 T-ATAATTTTTTATGCATCC
75783421 T-T-ATTTTTT
1 TATAATTTTTT
75783430 TTGATGTTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 7 0.26
18 1 0.04
19 1 0.04
20 18 0.67
ACGTcount: A:0.21, C:0.15, G:0.04, T:0.60
Consensus pattern (19 bp):
TATAATTTTTTATGCATCC
Found at i:75783431 original size:20 final size:20
Alignment explanation
Indices: 75783383--75783421 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
75783373 GTATTCCCTT
75783383 ATAATTTTTTATGCATCCTC
1 ATAATTTTTTATGCATCCTC
*
75783403 ATAATTTTTTATGCTTCCT
1 ATAATTTTTTATGCATCCT
75783422 TATTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54
Consensus pattern (20 bp):
ATAATTTTTTATGCATCCTC
Found at i:75783930 original size:21 final size:21
Alignment explanation
Indices: 75783889--75783930 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75783879 TTTTTTAATT
** *
75783889 TATAAAAATATTATTAGTATA
1 TATAAAAATATTAAAAATATA
75783910 TATAAAAATATTAAAAATATA
1 TATAAAAATATTAAAAATATA
75783931 AAAATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
TATAAAAATATTAAAAATATA
Found at i:75784340 original size:15 final size:15
Alignment explanation
Indices: 75784320--75784350 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75784310 CCGTACAAAG
75784320 CCTCATGGGTCATAC
1 CCTCATGGGTCATAC
75784335 CCTCATGGGTCATAC
1 CCTCATGGGTCATAC
75784350 C
1 C
75784351 GATGCGTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.35, G:0.19, T:0.26
Consensus pattern (15 bp):
CCTCATGGGTCATAC
Found at i:75790113 original size:30 final size:30
Alignment explanation
Indices: 75790079--75790139 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
75790069 TTATATGATG
75790079 AAATAAATAATAAATTATATAATATTAAAT
1 AAATAAATAATAAATTATATAATATTAAAT
* * *
75790109 AAATAAATAATTATTTATATTATATTAAAT
1 AAATAAATAATAAATTATATAATATTAAAT
75790139 A
1 A
75790140 TAACTGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (30 bp):
AAATAAATAATAAATTATATAATATTAAAT
Found at i:75790432 original size:23 final size:24
Alignment explanation
Indices: 75790406--75790450 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
75790396 AAAATTTAAT
75790406 AAAGAG-AAAATTATTATTTTATC
1 AAAGAGTAAAATTATTATTTTATC
* * *
75790429 AAAGGGTAAAATTGTTGTTTTA
1 AAAGAGTAAAATTATTATTTTA
75790451 AAATATATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (24 bp):
AAAGAGTAAAATTATTATTTTATC
Found at i:75793898 original size:13 final size:13
Alignment explanation
Indices: 75793880--75793907 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75793870 AGCGAACTTC
75793880 TTATTCACATTGT
1 TTATTCACATTGT
75793893 TTATTCACATTGT
1 TTATTCACATTGT
75793906 TT
1 TT
75793908 GGCCTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (13 bp):
TTATTCACATTGT
Found at i:75794226 original size:15 final size:15
Alignment explanation
Indices: 75794208--75794238 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75794198 TACTTATGAA
*
75794208 TAAAATCTAAATAAT
1 TAAAATCAAAATAAT
75794223 TAAAATCAAAATAAT
1 TAAAATCAAAATAAT
75794238 T
1 T
75794239 GCAAATACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAATCAAAATAAT
Found at i:75795983 original size:30 final size:30
Alignment explanation
Indices: 75795949--75796009 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
75795939 TTATATGATG
75795949 AAATAAATAATAAATTATATAATATTAAAT
1 AAATAAATAATAAATTATATAATATTAAAT
* * *
75795979 AAATAAATAATTATTTATATTATATTAAAT
1 AAATAAATAATAAATTATATAATATTAAAT
75796009 A
1 A
75796010 TAACTGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (30 bp):
AAATAAATAATAAATTATATAATATTAAAT
Found at i:75796302 original size:23 final size:24
Alignment explanation
Indices: 75796276--75796320 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
75796266 AAAATTTAAT
75796276 AAAGAG-AAAATTATTATTTTATC
1 AAAGAGTAAAATTATTATTTTATC
* * *
75796299 AAAGGGTAAAATTGTTGTTTTA
1 AAAGAGTAAAATTATTATTTTA
75796321 AAATATATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (24 bp):
AAAGAGTAAAATTATTATTTTATC
Found at i:75799768 original size:13 final size:13
Alignment explanation
Indices: 75799750--75799777 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75799740 AGCGAACTTC
75799750 TTATTCACATTGT
1 TTATTCACATTGT
75799763 TTATTCACATTGT
1 TTATTCACATTGT
75799776 TT
1 TT
75799778 GGCCTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (13 bp):
TTATTCACATTGT
Found at i:75800096 original size:15 final size:15
Alignment explanation
Indices: 75800078--75800108 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75800068 TACTTATGAA
*
75800078 TAAAATCTAAATAAT
1 TAAAATCAAAATAAT
75800093 TAAAATCAAAATAAT
1 TAAAATCAAAATAAT
75800108 T
1 T
75800109 GCAAATACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAATCAAAATAAT
Found at i:75805100 original size:20 final size:20
Alignment explanation
Indices: 75805059--75805102 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
75805049 CTATATACAA
* *
75805059 ATATCATATTCTTGTATTTC
1 ATATAATATTCTTGTATGTC
75805079 ATATAATATTCTT-TCATGTC
1 ATATAATATTCTTGT-ATGTC
75805099 ATAT
1 ATAT
75805103 TTCCATATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.52
Consensus pattern (20 bp):
ATATAATATTCTTGTATGTC
Found at i:75807592 original size:49 final size:49
Alignment explanation
Indices: 75807513--75807616 Score: 129
Period size: 49 Copynumber: 2.1 Consensus size: 49
75807503 TGCATGATCG
* * *
75807513 CATAATCAACATCAACTGGGGGCTCGAGTTATACCTCAAC-CTGTGACCA
1 CATAACCAACATCAACTGGGAGCCCGAGTTATACCTCAACTC-GTGACCA
* * *
75807562 CATAACCACCATCAACTGGGAGCCCTAGTTATACTTCAACTCGTGACCA
1 CATAACCAACATCAACTGGGAGCCCGAGTTATACCTCAACTCGTGACCA
*
75807611 TATAAC
1 CATAAC
75807617 TATGGTGAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 46 0.98
50 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (49 bp):
CATAACCAACATCAACTGGGAGCCCGAGTTATACCTCAACTCGTGACCA
Found at i:75814517 original size:16 final size:15
Alignment explanation
Indices: 75814493--75814522 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75814483 AACTATTTTA
75814493 TTACAAATTTCACTC
1 TTACAAATTTCACTC
75814508 TTACATAATTTCACT
1 TTACA-AATTTCACT
75814523 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:75814832 original size:50 final size:49
Alignment explanation
Indices: 75814727--75814958 Score: 218
Period size: 50 Copynumber: 4.7 Consensus size: 49
75814717 TACGCATAGC
* * * ** *
75814727 AGCCTGCATTTAGTACTACACATGCGACC-AACAATCCGGTACATGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAAC-ATTTGGTACACGTAGT
* *
75814776 AGCCTGCACTTAGAACTACACACGTGACCTAACCATTTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAA-CATTTGGTACACGTAGT
* * * * *
75814826 AGCCTGCACTTAGTACTACACAAGTGA-TTGAA-GTTGTCGGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACACGTGACCT-AACATT-T--GGTACACGTAGT
* * *
75814877 AGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAAC-ATTTGGTACACGTAGT
**
75814927 AGCCTATACTTAGTACTACACACGTGACCTAA
1 AGCCTGCACTTAGTACTACACACGTGACCTAA
75814959 AATCATCTTA
Statistics
Matches: 148, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
48 2 0.01
49 27 0.18
50 79 0.53
51 37 0.25
52 2 0.01
53 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
AGCCTGCACTTAGTACTACACACGTGACCTAACATTTGGTACACGTAGT
Found at i:75814906 original size:101 final size:101
Alignment explanation
Indices: 75814772--75814953 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
75814762 CCGGTACATG
* * *
75814772 TAGTAGCCTGCACTTAGAACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGAACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCTACACTT
75814837 AGTACTACACAAGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACAAGTGATTGAAGTTGTCGGGTACGCA
* * * * *
75814873 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTATACTT
1 TAGTAGCCTGCACTTAGAACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCTACACTT
*
75814938 AGTACTACACACGTGA
66 AGTACTACACAAGTGA
75814954 CCTAAAATCA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGAACTACACACGCGACCTAACCATCTGATACACGTAGTAGCCTACACTT
AGTACTACACAAGTGATTGAAGTTGTCGGGTACGCA
Found at i:75817177 original size:19 final size:19
Alignment explanation
Indices: 75817149--75817186 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
75817139 AGAGTTAAAG
75817149 AAACGAG-AAATGGGCCAA
1 AAACGAGAAAATGGGCCAA
75817167 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAATGGGCCAA
75817187 CATACGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.50, C:0.16, G:0.29, T:0.05
Consensus pattern (19 bp):
AAACGAGAAAATGGGCCAA
Found at i:75817349 original size:13 final size:13
Alignment explanation
Indices: 75817331--75817357 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75817321 GATGTAATTG
75817331 CACACGGGCGTGT
1 CACACGGGCGTGT
75817344 CACACGGGCGTGT
1 CACACGGGCGTGT
75817357 C
1 C
75817358 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:75818412 original size:5 final size:5
Alignment explanation
Indices: 75818410--75818444 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
75818400 TATTTTATAT
75818410 TATTA TATTA TATTA TATTA -A-TA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA
75818445 ATAAAAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.07
4 2 0.07
5 24 0.86
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:75818420 original size:13 final size:13
Alignment explanation
Indices: 75818400--75818443 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
75818390 AAGTAAATGT
75818400 TATT-TTATATTA
1 TATTATTATATTA
75818412 T-TATATTATATTA
1 TAT-TATTATATTA
*
75818425 TATTAATATATTA
1 TATTATTATATTA
75818438 TATTAT
1 TATTAT
75818444 AATAAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 1 0.04
12 2 0.07
13 23 0.85
14 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATTATATTA
Found at i:75818425 original size:18 final size:18
Alignment explanation
Indices: 75818399--75818444 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
75818389 TAAGTAAATG
* *
75818399 TTATTTTATATTATTATA
1 TTATATTATATTAATATA
75818417 TTATATTATATTAATATA
1 TTATATTATATTAATATA
75818435 TTATATTATA
1 TTATATTATA
75818445 ATAAAAGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATATTATATTAATATA
Found at i:75818455 original size:23 final size:23
Alignment explanation
Indices: 75818410--75818455 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75818400 TATTTTATAT
* * **
75818410 TATTATATTATATTATATTAATA
1 TATTATATTATAATAAAAGAATA
75818433 TATTATATTATAATAAAAGAATA
1 TATTATATTATAATAAAAGAATA
75818456 AAAAAATAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATTATATTATAATAAAAGAATA
Found at i:75818492 original size:17 final size:16
Alignment explanation
Indices: 75818444--75818497 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
75818434 ATTATATTAT
*
75818444 AATAAAAGAATAAAAA-
1 AATAAAGGAA-AAAAAG
*
75818460 AATAAAGTAAATAAAAG
1 AATAAAGGAAA-AAAAG
75818477 AATAAAGGAACAAAAAG
1 AATAAAGGAA-AAAAAG
75818494 AATA
1 AATA
75818498 GAAAAAGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
15 1 0.03
16 12 0.38
17 18 0.56
18 1 0.03
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (16 bp):
AATAAAGGAAAAAAAG
Found at i:75820494 original size:31 final size:31
Alignment explanation
Indices: 75820458--75820520 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
75820448 TAGGCCTTTA
75820458 GTGGCGCTTTTAAGCGCCGCTAAAACTATTT
1 GTGGCGCTTTTAAGCGCCGCTAAAACTATTT
* **
75820489 GTGGCGTTTTTAAGCGTTGCTAAAACTATTT
1 GTGGCGCTTTTAAGCGCCGCTAAAACTATTT
75820520 G
1 G
75820521 CGCCTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (31 bp):
GTGGCGCTTTTAAGCGCCGCTAAAACTATTT
Found at i:75820530 original size:31 final size:31
Alignment explanation
Indices: 75820465--75820531 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
75820455 TTAGTGGCGC
* *
75820465 TTTTAAGCGCCGCTAAAACTATTTGTGGCGT
1 TTTTAAGCGCCGCTAAAACTATTTGCGCCGT
** *
75820496 TTTTAAGCGTTGCTAAAACTATTTGCGCCTT
1 TTTTAAGCGCCGCTAAAACTATTTGCGCCGT
75820527 TTTTA
1 TTTTA
75820532 CAAGCACTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (31 bp):
TTTTAAGCGCCGCTAAAACTATTTGCGCCGT
Found at i:75820808 original size:11 final size:11
Alignment explanation
Indices: 75820792--75820820 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
75820782 TATAAAAATT
75820792 TTCTATTAAAA
1 TTCTATTAAAA
75820803 TTCTATTAAAA
1 TTCTATTAAAA
75820814 TTC-ATTA
1 TTCTATTA
75820821 TCAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:75820834 original size:6 final size:6
Alignment explanation
Indices: 75820823--75820876 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
75820813 ATTCATTATC
* *
75820823 AAATAA AAATAA AAATAA AAATATA GAATCAA AACT-A AAATAA ATAATAA
1 AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA AAATAA A-AATAA
75820873 AAAT
1 AAAT
75820877 TAGATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.10
6 22 0.55
7 13 0.32
8 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:75820900 original size:31 final size:31
Alignment explanation
Indices: 75820823--75820900 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
75820813 ATTCATTATC
75820823 AAATAAAAATAAA-AATAAAAATATAGAATCA
1 AAAT-AAAATAAATAATAAAAATATAGAATCA
*
75820854 AAACTAAAATAAATAATAAAAAT-TAG-ATTA
1 AAA-TAAAATAAATAATAAAAATATAGAATCA
75820884 AATATAAATATAAATAA
1 AA-ATAAA-ATAAATAA
75820901 AATACAACAA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
30 9 0.21
31 23 0.55
32 10 0.24
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (31 bp):
AAATAAAATAAATAATAAAAATATAGAATCA
Found at i:75823951 original size:6 final size:6
Alignment explanation
Indices: 75823940--75823992 Score: 79
Period size: 6 Copynumber: 8.8 Consensus size: 6
75823930 TCATAAGAAA
* * *
75823940 ACACAC ACACAC ACACAT ACACAC ACACAT ACACAT ACACAT ACACAT
1 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT
75823988 ACACA
1 ACACA
75823993 CAGAAATACC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (6 bp):
ACACAT
Found at i:75823963 original size:18 final size:18
Alignment explanation
Indices: 75823940--75823992 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
75823930 TCATAAGAAA
*
75823940 ACACACACACACACACAT
1 ACACACACACATACACAT
75823958 ACACACACACATACACAT
1 ACACACACACATACACAT
*
75823976 ACACATACACATACACA
1 ACACACACACATACACA
75823993 CAGAAATACC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (18 bp):
ACACACACACATACACAT
Found at i:75827085 original size:16 final size:17
Alignment explanation
Indices: 75827064--75827098 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
75827054 ACTATTTATT
75827064 ATATAAATT-AAAAACA
1 ATATAAATTAAAAAACA
75827080 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
75827097 AT
1 AT
75827099 CACTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:75827860 original size:15 final size:14
Alignment explanation
Indices: 75827841--75827881 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
75827831 CCATGGCCAT
75827841 TAAACCTTAAACCA
1 TAAACCTTAAACCA
*
75827855 TAAAACTCTAAACCA
1 TAAACCT-TAAACCA
*
75827870 TAGACCTTAAAC
1 TAAACCTTAAAC
75827882 TTTAAATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.49, C:0.27, G:0.02, T:0.22
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:75828042 original size:14 final size:14
Alignment explanation
Indices: 75828025--75828055 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
75828015 GGTTTAAGTT
75828025 TTTAGTGGTTATAG
1 TTTAGTGGTTATAG
*
75828039 TTTAGTGTTTATAG
1 TTTAGTGGTTATAG
75828053 TTT
1 TTT
75828056 TTTAGGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (14 bp):
TTTAGTGGTTATAG
Found at i:75828112 original size:45 final size:44
Alignment explanation
Indices: 75828008--75828120 Score: 121
Period size: 38 Copynumber: 2.7 Consensus size: 44
75827998 CCATCTGATT
* * * *
75828008 TTTTTGGGGTTTAAGTTTTTAGTGGTTATAGTTTAGTGTTTATA
1 TTTTTGGGGTTTAGGGTTTTAGAGGTTATAGATTAGTGTTTATA
* *
75828052 -GTTT----TTTAGGG-TTTAGGGGTTATAGATTAGTGTTTATGA
1 TTTTTGGGGTTTAGGGTTTTAGAGGTTATAGATTAGTGTTTAT-A
75828091 TTTTTGGGGTTTAGGGTTTTAGAGGTTATA
1 TTTTTGGGGTTTAGGGTTTTAGAGGTTATA
75828121 TGACTTTTAG
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
38 24 0.44
39 6 0.11
40 3 0.05
43 3 0.05
44 7 0.13
45 12 0.22
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (44 bp):
TTTTTGGGGTTTAGGGTTTTAGAGGTTATAGATTAGTGTTTATA
Found at i:75828201 original size:41 final size:42
Alignment explanation
Indices: 75828125--75828213 Score: 135
Period size: 41 Copynumber: 2.1 Consensus size: 42
75828115 GTTATATGAC
* * *
75828125 TTTTAGCGGCGTTTTGACCACAAACGCCACTATTGCTCTATT
1 TTTTAGCGACGTTTTGACCAAAAACGCCACTATTGCTCTAGT
*
75828167 TTTTAGCGACGTTTT-ACCAAAAACGCCGCTATTGCTCTAGT
1 TTTTAGCGACGTTTTGACCAAAAACGCCACTATTGCTCTAGT
75828208 TTTTAG
1 TTTTAG
75828214 TGGAACGCCG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 29 0.67
42 14 0.33
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (42 bp):
TTTTAGCGACGTTTTGACCAAAAACGCCACTATTGCTCTAGT
Found at i:75828228 original size:70 final size:66
Alignment explanation
Indices: 75828147--75828279 Score: 194
Period size: 70 Copynumber: 2.0 Consensus size: 66
75828137 TTTGACCACA
*
75828147 AACGCCACTATTGCTCTATTTTTTAGCGACGTTTTACCAAAAACGCCGCTATTGCTCTAGTTTTT
1 AACGCCACTATTGCTCTATTTTTAAG-G-CGTTTTACCAAAAACGCCGC-ATTGCTCT-GTTTTT
75828212 AGTGG
62 AGTGG
* * *
75828217 AACGCCGCTATTGCTCTGTTTTTAAGGCGTTTTACCAAAAACGCCGCATTGTTCTGTTTTTAG
1 AACGCCACTATTGCTCTATTTTTAAGGCGTTTTACCAAAAACGCCGCATTGCTCTGTTTTTAG
75828280 CGGCGTTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
66 8 0.14
67 7 0.12
68 20 0.34
69 1 0.02
70 23 0.39
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.38
Consensus pattern (66 bp):
AACGCCACTATTGCTCTATTTTTAAGGCGTTTTACCAAAAACGCCGCATTGCTCTGTTTTTAGTG
G
Found at i:75828659 original size:8 final size:8
Alignment explanation
Indices: 75828646--75828671 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
75828636 AATGGATTCG
75828646 CCAAGCTA
1 CCAAGCTA
75828654 CCAAGCTA
1 CCAAGCTA
75828662 CCAAGCTA
1 CCAAGCTA
75828670 CC
1 CC
75828672 TCATTCTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.42, G:0.12, T:0.12
Consensus pattern (8 bp):
CCAAGCTA
Found at i:75834114 original size:40 final size:40
Alignment explanation
Indices: 75834068--75834144 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
75834058 ACACACCTTG
* * *
75834068 TGGGGATAGAATCGACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
** *
75834108 TGGGGATAAAATCAACCCATTCAACCCTACAGACCAA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAA
75834145 ATGGTATCGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.32, G:0.17, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:75837740 original size:24 final size:24
Alignment explanation
Indices: 75837713--75837767 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
75837703 TGTTTTAATG
* * *
75837713 ATTTATTCATTTTTTATGTTATTT
1 ATTTATTCATTGTTCATATTATTT
* *
75837737 ATTTGTTTATTGTTCATATTATTT
1 ATTTATTCATTGTTCATATTATTT
75837761 ATTTATT
1 ATTTATT
75837768 ACTTCTACTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.05, T:0.69
Consensus pattern (24 bp):
ATTTATTCATTGTTCATATTATTT
Found at i:75837758 original size:20 final size:18
Alignment explanation
Indices: 75837716--75837767 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
75837706 TTTAATGATT
75837716 TATTCATTTTTTA-TGTTA
1 TATT-ATTTTTTATTGTTA
75837734 T-TTATTTGTTTATTGTTCA
1 TATTATTT-TTTATTGTT-A
75837753 TATTATTTATTTATT
1 TATTATTT-TTTATT
75837768 ACTTCTACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
16 4 0.14
17 6 0.21
18 5 0.17
19 2 0.07
20 12 0.41
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.69
Consensus pattern (18 bp):
TATTATTTTTTATTGTTA
Found at i:75862520 original size:30 final size:30
Alignment explanation
Indices: 75862486--75862546 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75862476 TCCTTAACTC
75862486 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75862516 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75862546 A
1 A
75862547 CGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75869007 original size:133 final size:133
Alignment explanation
Indices: 75868805--75869261 Score: 430
Period size: 133 Copynumber: 3.4 Consensus size: 133
75868795 CTTATCTCTT
* * ** ** *
75868805 TGAAGTTGCAGTGGAGCAGATCGAAAATAGCAAATCTTATCT-CTCTGAAGTTACAA--TAGAGC
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCT-TGAAGTTGCAATGTAGAGC
* *
75868867 AGATTAAACCTATAAACCTTATCTCCCTGAAGTTGCAATAGG-GCTGGTTGAAGTTACAAGTCTT
65 AGATTAAAACTATAAACCTTATCTCCCTGAAGTTGCAGT-GGAGCT-GTTGAAGTTACAAGTCTT
75868931 ATATCCC
128 AT-TCCC
** * * * * * *
75868938 TGAAGTTATAGTAGAGCAAACTGAGGATAGTGAATCTTATTTCCTTGAGGTTGCAATGTA-A-CA
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTAGAGCA
* * * * ** * **
75869001 GATTAAAATTACAAATCTGATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTA-TAGATCTGC
66 GATTAAAACTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGC-TGTTGAAGTTACAAG-TCTTA
75869065 TCTCCC
129 T-TCCC
* * ** * *
75869071 TAAAGTTGCAGTGGAGTAGATTAAGGATAGCAAATCTTATCTCTTTGAAGTTG-TA-GTAGAGCA
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTAGAGCA
* *
75869134 GA-TAAAAGCTATAAACCTTATCTTCCTGAAGTTACAGTGGAGCATGTTGAAGTTACAAGTCTTA
66 GATTAAAA-CTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGC-TGTTGAAGTTACAAGTCTTA
*
75869198 CTTCCG
129 -TTCCC
*
75869204 TGAAGTTGCAGTGGAGTAGATTGAAGATAGTGAATCTTATCTCCTTGAAGTTGCAATG
1 TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATG
75869262 GAGTAGATTG
Statistics
Matches: 253, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
131 3 0.01
132 11 0.04
133 229 0.91
134 7 0.03
135 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (133 bp):
TGAAGTTGCAGTGGAGTAGATTGAGGATAGTGAATCTTATCTCCTTGAAGTTGCAATGTAGAGCA
GATTAAAACTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCTGTTGAAGTTACAAGTCTTATT
CCC
Found at i:75869228 original size:44 final size:45
Alignment explanation
Indices: 75868792--75869950 Score: 363
Period size: 44 Copynumber: 25.6 Consensus size: 45
75868782 AATCGTGGCG
* * *
75868792 AATCTTA-TCTCTTTGAAGTTGCAGTGGAGCAGATCGAAAATAGCA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * ** *
75868837 AATCTTA-TCT-CTCTGAAGTTACAATAGAGCAGATTAAACCTATA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * *
75868881 AACCTTA-TCTCCCTGAAGTTGCAATAGG-GCTGGTTGAAGTTACA
1 AATCTTACTCTCCTTGAAGTTGCAGT-GGAGCAGATTGAAGATACA
* * * ** * * * * **
75868925 AGTCTTA-TATCCCTGAAGTTATAGTAGAGCAAACTGAGGATAGTG
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * *
75868970 AATCTTA-TTTCCTTGAGGTTGCAATGTAACAGATT-AAAATTACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGA-TACA
* * * * *
75869014 AATCTGA-TCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGTTATA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
75869058 GATC-TGCTCTCCCTAAAGTTGCAGTGGAGTAGATT-AAGGATAGCA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAA-GATA-CA
* * * ** * *
75869103 AATCTTA-TCTCTTTGAAGTTGTAGTAGAGCAGATAAAAGCTATA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
75869147 AACCTTA-TCTTCC-TGAAGTTACAGTGGAGCATG-TTGAAGTTACA
1 AATCTTACTC-TCCTTGAAGTTGCAGTGGAGCA-GATTGAAGATACA
* * * **
75869191 AGTCTTACT-TCCGTGAAGTTGCAGTGGAGTAGATTGAAGATAGTG
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
75869236 AATCTTA-TCTCCTTGAAGTTGCAATGGAGTAGATTGAATATAGCG
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
75869281 AATATTA-TCT-CTCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGGAGCAGATT---G--A-AGA-TACA
*
75869332 AATCTTA-TCTCCTTAAAGTTGCAGAT-GAGCAGATTGAA-ACTACA
1 AATCTTACTCTCCTTGAAGTTGCAG-TGGAGCAGATTGAAGA-TACA
* * * *
75869376 AATCTTA-TCTTTCTT-AAGTTGCAGTGAAGAAGATTGAAGATACG
1 AATCTTACTC-TCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * ** *
75869420 AGTCTTA-TCT-CTCTAAAGTTGCAATGGAATAGACTAAAGCTACAAGCTACA
1 AATCTTACTCTCCT-TGAAGTTGCAGTGG---AG-C---AGATTGAAGATACA
* * * * * * *
75869471 AATTTTA-TCTCCCTAAAGTTACAGTGGAGCAGATTGAAAATGCT
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * ** * *
75869515 AATCTTA-TTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATAC-A
* * * *
75869560 GTTATGAGTCTTATTC-CCCTGAAGTTGCAGTAGGATG--GATTGAAATCATTATGGGA
1 ---A--A-TCTTACTCTCCTTGAAGTTGCAGT-GGA-GCAGATTG-AA-GA-TA---CA
* * * ** *
75869616 AATCTTA-TCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGCCACT
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * **
75869660 AATCTTA-TCTCCCTGAAGTTGCAGTGGAGCTGATTAAAGCCACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * ** * **
75869704 GATCTTA-TCTCCCTGAAGTTATAGTGGAGTAGATTGAAGCCACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
75869748 AATGTTA-TCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAATAGCA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * ** * * *
75869793 AATTTTA-TCACCTTGAAGTTGTAGTGGAATAGATTAAAGCTATA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
75869837 AACCTTA-TCTCCTTGAA-TTGCCGTGGAGCAGATTGAAGTTACA
1 AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
75869880 AATCTTA-TCTCCCTG-AGATTGCAGTAGTGTAGATTGAA-ACAACA
1 AATCTTACTCTCCTTGAAG-TTGCAGTGGAGCAGATTGAAGA-TACA
75869924 AATTCTATAC-CT-C-TGAAGTTGCAGTGG
1 AA-TCT-TACTCTCCTTGAAGTTGCAGTGG
75869951 GTTATAAAGA
Statistics
Matches: 837, Mismatches: 208, Indels: 139
0.71 0.18 0.12
Matches are distributed among these distances:
42 3 0.00
43 42 0.05
44 437 0.52
45 206 0.25
46 8 0.01
47 4 0.00
48 6 0.01
49 6 0.01
50 26 0.03
51 83 0.10
52 12 0.01
53 1 0.00
54 2 0.00
56 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (45 bp):
AATCTTACTCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:75869273 original size:89 final size:88
Alignment explanation
Indices: 75868791--75869917 Score: 431
Period size: 89 Copynumber: 12.4 Consensus size: 88
75868781 TAATCGTGGC
** * * * ** *
75868791 GAATCTTATCTCTTTGAAGTTGCAGTGGAGCAGATCGAAAATAGCAAATCTTATCTCTCTGAAGT
1 GAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTA-CAAATCTTATCTCCCTGAAGT
* * * * **
75868856 TACAATAGAGCAGATTAAACCTAT
65 TGCAGTAGAGCAAATTGAAGATAT
* * * * *
75868880 AAACCTTATCTCCCTGAAGTTGCAATAGG-GCT-GGTTGAAGTTACAAGTCTTATATCCCTGAAG
1 GAATCTTATCTCCCTGAAGTTGCAAT-GGAG-TAGATTGAAGTTACAAATCTTATCTCCCTGAAG
** * *
75868943 TTATAGTAGAGCAAACTGAGGATAGT
64 TTGCAGTAGAGCAAATTGAAGATA-T
* * * * ** * * *
75868969 GAATCTTATTTCCTTGAGGTTGCAATGTAACAGATTAAAATTACAAATCTGATCTCCCTGAAGTT
1 GAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
* *
75869034 GCAGTGGAGCAAATTGAAGTTAT
66 GCAGTAGAGCAAATTGAAGATAT
** * * * **
75869057 -AGATCTGCTCTCCCTAAAGTTGCAGTGGAGTAGATT-AAGGATAGCAAATCTTATCTCTTTGAA
1 GA-ATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAA-GTTA-CAAATCTTATCTCCCTGAA
* * ** *
75869120 GTTGTAGTAGAGCAGATAAAAGCTAT
63 GTTGCAGTAGAGCAAATTGAAGATAT
* * * * * * * *
75869146 AAACCTTATCTTCCTGAAGTTACAGTGGAGCATG-TTGAAGTTACAAGTCTTA-CTTCCGTGAAG
1 GAATCTTATCTCCCTGAAGTTGCAATGGAGTA-GATTGAAGTTACAAATCTTATC-TCCCTGAAG
* * *
75869209 TTGCAGTGGAGTAGATTGAAGATAGT
64 TTGCAGTAGAGCAAATTGAAGATA-T
* * * *
75869235 GAATCTTATCTCCTTGAAGTTGCAATGGAGTAGATTGAA-TATAGCGAATATTATCTCTCTGAAG
1 GAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGT-TA-CAAATCTTATCTCCCTGAAG
* * * *
75869299 TTGCAGTGGAACAAATTAAAGCTACAAATTAC
64 TTGCAGTAGAGCAAATT---G--A-AGA-TAT
* * * * ** ** *
75869331 AAATCTTATCTCCTTAAAGTTGCAGAT-GAGCAGATTGAAACTACAAATCTTATCTTTCTTAAGT
1 GAATCTTATCTCCCTGAAGTTGCA-ATGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAGT
*
75869395 TGCAGT-GAAG-AAGATTGAAGATAC
65 TGCAGTAG-AGCAA-ATTGAAGATAT
* * * * * * *
75869419 GAGTCTTATCTCTCTAAAGTTGCAATGGAATAGACTAAAGCTACAAGCTACAAATTTTATCTCCC
1 GAATCTTATCTCCCTGAAGTTGCAATGGAGTAGA-T-----T-GAAGTTACAAATCTTATCTCCC
* * * *
75869484 TAAAGTTACAGTGGAGCAGATTGAA-A-AT
59 TGAAGTTGCAGTAGAGCAAATTGAAGATAT
* * * * *
75869512 GCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTATGAGTCTTAT-TC
1 G--AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTAC-A---A--A-TCTTATCT-
* *
75869576 CCCTGAAGTTGCAGTAG-G-ATGGATTGAAATCATTAT
56 CCCTGAAGTTGCAGTAGAGCA--AATTG-AA-GA-TAT
* * * * ** *
75869612 GGGAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGCCACTAATCTTATCTCCCTGAA
1 --G-AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAA
* ** * *
75869677 GTTGCAGTGGAGCTGATTAAAGCCACA-
63 GTTGCAGTAGAGCAAATTGAAG--ATAT
** * ** *
75869704 G-ATCTTATCTCCCTGAAGTTATAGTGGAGTAGATTGAAGCCACAAATGTTATCTCCCTGAAGTT
1 GAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
* * * *
75869768 GCAGTGGAGTAGATTGAAAATA-
66 GCAGTAGAGCAAATTGAAGATAT
* * * * * * * * * * *
75869790 GCAAATTTTATCACCTTGAAGTTGTAGTGGAATAGATTAAAGCTATAAACCTTATCTCCTTGAA-
1 G--AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAG
* * * * *
75869854 TTGCCGTGGAGCAGATTGAAGTTAC
64 TTGCAGTAGAGCAAATTGAAGATAT
* * * *
75869879 AAATCTTATCTCCCTG-AGATTGCAGTAGTGTAGATTGAA
1 GAATCTTATCTCCCTGAAG-TTGCAATGGAGTAGATTGAA
75869918 ACAACAAATT
Statistics
Matches: 790, Mismatches: 181, Indels: 136
0.71 0.16 0.12
Matches are distributed among these distances:
86 5 0.01
87 33 0.04
88 222 0.28
89 245 0.31
90 35 0.04
91 1 0.00
92 2 0.00
93 7 0.01
94 36 0.05
95 118 0.15
96 41 0.05
97 5 0.01
98 1 0.00
100 2 0.00
101 36 0.05
102 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (88 bp):
GAATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
GCAGTAGAGCAAATTGAAGATAT
Found at i:75869473 original size:95 final size:95
Alignment explanation
Indices: 75869371--75869560 Score: 236
Period size: 95 Copynumber: 2.0 Consensus size: 95
75869361 CAGATTGAAA
** * * * * *
75869371 CTACAAATCTTATCTTTCTTAAGTTGCAGTGAAGAAGATTGAAGATACGAGTCTTATCTCTCTAA
1 CTACAAATCTTATCTCCCTAAAGTTACAGTGAAGAAGATTGAAAATACGAATCTTATCTCCCTAA
75869436 AGTTGCAATGGAATAGACTAAAGCTACAAG
66 AGTTGCAATGGAATAGACTAAAGCTACAAG
* * * * * * *
75869466 CTACAAATTTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGA
1 CTACAAATCTTATCTCCCTAAAGTTACAGTGAAGAAGATTGAAAATACGAATCTTATCTCCCTAA
* *
75869531 AGTTGCAGTGGAATAGATTAAAGCTACAAG
66 AGTTGCAATGGAATAGACTAAAGCTACAAG
75869561 TTATGAGTCT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
95 79 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (95 bp):
CTACAAATCTTATCTCCCTAAAGTTACAGTGAAGAAGATTGAAAATACGAATCTTATCTCCCTAA
AGTTGCAATGGAATAGACTAAAGCTACAAG
Found at i:75869549 original size:139 final size:140
Alignment explanation
Indices: 75869206--75869549 Score: 383
Period size: 139 Copynumber: 2.5 Consensus size: 140
75869196 TACTTCCGTG
* * * * * *
75869206 AAGTTGCAGTGGAGTAGATTGAAGATAG-TGAATCTTATCTCCTTGAAGTTGCAATGGAGTAGAT
1 AAGTTGCAGTGGAGCAGATTGAAAAT-GCT-AATCTTATTTCCCTGAAGTTGCAGTGGAATAGAT
* * * * *
75869270 TGAATATAGCGAATATTATCTCTCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAAAT
64 TGAAGATAGCGAATATTATCTCTCTAAAGTTGCAATGGAACAAACTAAAGCTACAAACTACAAAT
*
75869335 CTTATCTCCTTA
129 CTTATCTCCCTA
* * * * * *
75869347 AAGTTGCAGAT-GAGCAGATTGAAACTACAAATCTTATCTT-TCTTAAGTTGCAGT-GAAGAAGA
1 AAGTTGCAG-TGGAGCAGATTGAAAATGCTAATCTTAT-TTCCCTGAAGTTGCAGTGGAA-TAGA
* * * * *
75869409 TTGAAGATA-CGAGTCTTATCTCTCTAAAGTTGCAATGGAATAGACTAAAGCTACAAGCTACAAA
63 TTGAAGATAGCGAATATTATCTCTCTAAAGTTGCAATGGAACAAACTAAAGCTACAAACTACAAA
*
75869473 TTTTATCTCCCTA
128 TCTTATCTCCCTA
*
75869486 AAGTTACAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATT
1 AAGTTGCAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATT
75869550 AAAGCTACAA
Statistics
Matches: 165, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
138 3 0.02
139 107 0.65
140 32 0.19
141 22 0.13
142 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (140 bp):
AAGTTGCAGTGGAGCAGATTGAAAATGCTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTG
AAGATAGCGAATATTATCTCTCTAAAGTTGCAATGGAACAAACTAAAGCTACAAACTACAAATCT
TATCTCCCTA
Found at i:75871726 original size:3 final size:3
Alignment explanation
Indices: 75871706--75871757 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
75871696 TAAAAATTAG
* * * *
75871706 ATT ATTT ATT ATT GTT ATT ATT -TT TTT ATT ATT TTT ATT AGT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
75871751 ATT ATT A
1 ATT ATT A
75871758 ACATTATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:75872494 original size:16 final size:19
Alignment explanation
Indices: 75872456--75872496 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
75872446 CCCATTTCAT
*
75872456 TTTCAAAATAAAAAGTCGA
1 TTTCAAAATAAAAAGTAGA
75872475 TTTCAAAA-AAAAA-TAG-
1 TTTCAAAATAAAAAGTAGA
75872491 TTTCAA
1 TTTCAA
75872497 CACTAGGTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 2 0.10
18 5 0.24
19 8 0.38
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (19 bp):
TTTCAAAATAAAAAGTAGA
Found at i:75873452 original size:14 final size:15
Alignment explanation
Indices: 75873427--75873455 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75873417 ACATTCAATT
75873427 AATCAGTTCATAACA
1 AATCAGTTCATAACA
75873442 AATCA-TTCATAACA
1 AATCAGTTCATAACA
75873456 TATTCAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
AATCAGTTCATAACA
Found at i:75874736 original size:43 final size:43
Alignment explanation
Indices: 75874674--75874764 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
75874664 ATTTTATTTA
*
75874674 TTTTATTTATTTAATTATTATAATATATATACTTAACTTTTAAG
1 TTTTATTTATTTAATTATTATAATATATAT-CTTAACTTTAAAG
* *
75874718 TTTTA-TTATTATAA-TATTATAATATATATTTTAACTTTAAAT
1 TTTTATTTATT-TAATTATTATAATATATATCTTAACTTTAAAG
75874760 TTTTA
1 TTTTA
75874765 AATAAATGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
42 15 0.35
43 20 0.47
44 8 0.19
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.58
Consensus pattern (43 bp):
TTTTATTTATTTAATTATTATAATATATATCTTAACTTTAAAG
Found at i:75875306 original size:25 final size:25
Alignment explanation
Indices: 75875259--75875306 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
75875249 TCTCGAGCCA
**
75875259 TATAACAGGAAGCTCATGTGAGCTG
1 TATAACAGGAAGCTCATAAGAGCTG
* *
75875284 TATAACGGGAAGCTGATAAGAGC
1 TATAACAGGAAGCTCATAAGAGC
75875307 CATATTTAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (25 bp):
TATAACAGGAAGCTCATAAGAGCTG
Found at i:75875420 original size:24 final size:24
Alignment explanation
Indices: 75875387--75875448 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
75875377 AGTTATATAT
* *
75875387 ATATCGGGAAG-TTCAAGCGAGCCA
1 ATATCAGGAAGCTTC-AGAGAGCCA
75875411 ATATCAGGAAGCTTCAGAGAGCCA
1 ATATCAGGAAGCTTCAGAGAGCCA
* *
75875435 TTAATTAGGAAGCT
1 AT-ATCAGGAAGCT
75875449 CATAAAGAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 19 0.59
25 13 0.41
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (24 bp):
ATATCAGGAAGCTTCAGAGAGCCA
Found at i:75881182 original size:27 final size:27
Alignment explanation
Indices: 75881143--75881255 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 27
75881133 CCACATGAGC
** *
75881143 AATTAAATTAATTTTTAAAATTTTAAA
1 AATTAAAAAAATTTTTAAAATTTAAAA
75881170 AATTAAAAAAATTATTTAAAAATTT--AA
1 AATTAAAAAAATT-TTT-AAAATTTAAAA
* * **
75881197 ATTTAAAAAAAGTTCAAAAATTATAAAA
1 AATTAAAAAAATTTTTAAAATT-TAAAA
* **
75881225 AATTATAAATGTTTTT--AATTTAAAA
1 AATTAAAAAAATTTTTAAAATTTAAAA
75881250 AATTAA
1 AATTAA
75881256 TTAATTACTC
Statistics
Matches: 67, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
25 16 0.24
26 6 0.09
27 24 0.36
28 14 0.21
29 7 0.10
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.40
Consensus pattern (27 bp):
AATTAAAAAAATTTTTAAAATTTAAAA
Found at i:75881688 original size:16 final size:17
Alignment explanation
Indices: 75881667--75881700 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75881657 ATAAAAGAAG
*
75881667 TTAAAT-ATATTTTTTA
1 TTAAATGATAATTTTTA
75881683 TTAAATGATAATTTTTA
1 TTAAATGATAATTTTTA
75881700 T
1 T
75881701 CTACTTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTAAATGATAATTTTTA
Found at i:75884843 original size:16 final size:15
Alignment explanation
Indices: 75884811--75884840 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75884801 ACTATTGGTA
75884811 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
*
75884826 ATTTTTTTAATATTT
1 ATTTTTTAAATATTT
75884841 TATCATACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:75892491 original size:46 final size:46
Alignment explanation
Indices: 75892424--75892593 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
75892414 AACCCGCCCC
* *
75892424 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTTGCATCCA
* * * *
75892470 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC-ATTTGCATCCA
* * *
75892518 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CATTTGCATCCA
* *
75892563 TAGGTAAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
75892594 GGATGCTCAA
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 1 0.01
46 55 0.56
47 26 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTTGCATCCA
Found at i:75892536 original size:93 final size:93
Alignment explanation
Indices: 75892429--75892599 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75892419 GCCCCTAAGT
* * *
75892429 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTAAACTCGGACTCAACTCA
75892493 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
75892522 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTAAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
75892587 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75892600 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:75893054 original size:30 final size:30
Alignment explanation
Indices: 75893020--75893079 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75893010 ATTTAATATG
75893020 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
75893050 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
75893080 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75901703 original size:25 final size:25
Alignment explanation
Indices: 75901675--75901725 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
75901665 AAATTTAGAG
75901675 AGAACTTGCATACGGTAAGATTTCA
1 AGAACTTGCATACGGTAAGATTTCA
75901700 AGAACTTGCATACGGTAAGATTTCA
1 AGAACTTGCATACGGTAAGATTTCA
75901725 A
1 A
75901726 CCTAAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (25 bp):
AGAACTTGCATACGGTAAGATTTCA
Found at i:75906339 original size:19 final size:19
Alignment explanation
Indices: 75906316--75906369 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
75906306 TAGAAAGTTG
*
75906316 TAAAAATTATTTAAA-AAT
1 TAAAAATTATTAAAATAAT
*
75906334 TAAAAACTATTAAAATAAT
1 TAAAAATTATTAAAATAAT
* *
75906353 TAAAAAATATAAAAATA
1 TAAAAATTATTAAAATA
75906370 TATTTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 13 0.42
19 18 0.58
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAAATTATTAAAATAAT
Found at i:75906573 original size:27 final size:27
Alignment explanation
Indices: 75906521--75906573 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
75906511 GTGAAATTTT
* *
75906521 AAATAAAAACTAAAATATATTTTTATA
1 AAATAAAAACTAAAATATAATATTATA
*
75906548 AAATAAAAAGGTAAAATA-AATATTAT
1 AAATAAAAA-CTAAAATATAATATTAT
75906574 GCCAAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (27 bp):
AAATAAAAACTAAAATATAATATTATA
Found at i:75911377 original size:17 final size:17
Alignment explanation
Indices: 75911357--75911423 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
75911347 TTTGTCTTGT
75911357 TTATTTAATTTTTTTTA
1 TTATTTAATTTTTTTTA
** *
75911374 TTATTTTGTTTTCTTTA
1 TTATTTAATTTTTTTTA
*
75911391 TTA--TAATTGTTTTT-
1 TTATTTAATTTTTTTTA
*
75911405 TTATAT-ATTTTCTTTTA
1 TTATTTAATTTT-TTTTA
75911422 TT
1 TT
75911424 TTATCGTTGT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
14 3 0.08
15 11 0.29
16 5 0.13
17 19 0.50
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (17 bp):
TTATTTAATTTTTTTTA
Done.