Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 233 of 253
Found at i:75911422 original size:31 final size:31
Alignment explanation
Indices: 75911356--75911424 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
75911346 ATTTGTCTTG
* * *
75911356 TTTATTTAATTTTTTTTATTATTTTGTTTTC
1 TTTATTTAATTGTTTTTATTATTATATTTTC
75911387 TTTATTATAATTGTTTTT-TTA-TATATTTTC
1 TTTATT-TAATTGTTTTTATTATTATATTTTC
75911417 TTTTATTT
1 -TTTATTT
75911425 TATCGTTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 8 0.24
31 15 0.45
32 10 0.30
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (31 bp):
TTTATTTAATTGTTTTTATTATTATATTTTC
Found at i:75911473 original size:12 final size:12
Alignment explanation
Indices: 75911458--75911490 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
75911448 ATTTTAATTT
*
75911458 TATTATTATTAG
1 TATTAGTATTAG
75911470 TATTAGTATTAG
1 TATTAGTATTAG
75911482 TATTAGTAT
1 TATTAGTAT
75911491 GTCATTATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (12 bp):
TATTAGTATTAG
Found at i:75911670 original size:3 final size:3
Alignment explanation
Indices: 75911632--75911689 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
75911622 AAAATTCATG
* * *
75911632 TTA TTA TT- TTAA TTA TCA TTC TTA TTA TTGA -CA TTA TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
75911677 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
75911690 ATATGTGTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 3 0.07
3 39 0.87
4 3 0.07
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:75912182 original size:30 final size:30
Alignment explanation
Indices: 75912148--75912206 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
75912138 ATTCGACGTA
* *
75912148 TTATTTATTTTCAA-TATTTTCATATATATG
1 TTATTTATCTTAAACTATTTT-ATATATATG
75912178 TTATTTATCTTAAACTATTTTATATATAT
1 TTATTTATCTTAAACTATTTTATATATAT
75912207 TCCTTTCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (30 bp):
TTATTTATCTTAAACTATTTTATATATATG
Found at i:75918366 original size:147 final size:151
Alignment explanation
Indices: 75918147--75918440 Score: 524
Period size: 150 Copynumber: 2.0 Consensus size: 151
75918137 CAAAAGTTAC
*
75918147 AAATAATCTCAATTTAATTTTAATTCTAAAAAATTTCAAAGAAAATAAAAAATACATAAAAAATT
1 AAATAATCTCAATTTAATCTTAATTCTAAAAAATTTCAAAGAAAATAAAAAATACATAAAAAATT
75918212 CAAACAAATAAT-A-A-ATTAAAATTTTATATTAATATTAAATAAAAACTCTCCCCGTCTACCTC
66 CAAACAAATAATAATATATTAAAATTTTATATTAATATTAAATAAAAACTCTCCCCGTCTACCTC
* *
75918274 TTATCTCTCCCTCCCCTATAT
131 TTACCCCTCCCTCCCCTATAT
75918295 AAATAATCTCAATTTAATCTTAATTCTAAAAAA-TTCAAAGAAAATAAAAAATACATAAAAAATT
1 AAATAATCTCAATTTAATCTTAATTCTAAAAAATTTCAAAGAAAATAAAAAATACATAAAAAATT
75918359 CAAACAAATAATAATATATTAAAATTTTATATTAATATTAAATAAAAACTCTCCCCGTCTACCTC
66 CAAACAAATAATAATATATTAAAATTTTATATTAATATTAAATAAAAACTCTCCCCGTCTACCTC
*
75918424 TTACCCCTCCCTGCCCT
131 TTACCCCTCCCTCCCCT
75918441 GCCACGTCCC
Statistics
Matches: 139, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
147 43 0.31
148 33 0.24
149 1 0.01
150 62 0.45
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (151 bp):
AAATAATCTCAATTTAATCTTAATTCTAAAAAATTTCAAAGAAAATAAAAAATACATAAAAAATT
CAAACAAATAATAATATATTAAAATTTTATATTAATATTAAATAAAAACTCTCCCCGTCTACCTC
TTACCCCTCCCTCCCCTATAT
Found at i:75918776 original size:18 final size:17
Alignment explanation
Indices: 75918736--75918779 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
75918726 TTTATTTTTT
75918736 TATTTAATATTTATATAA
1 TATTTAA-ATTTATATAA
* *
75918754 AATTTAAATTTATCATTA
1 TATTTAAATTTAT-ATAA
75918772 TATTTAAA
1 TATTTAAA
75918780 AAATATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTTAAATTTATATAA
Found at i:75926676 original size:96 final size:96
Alignment explanation
Indices: 75926567--75926796 Score: 255
Period size: 96 Copynumber: 2.4 Consensus size: 96
75926557 TAACGGTGCT
* * * *
75926567 AATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCAACGCCATATCCAAGAT
1 AATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATACCAACGCCATATCCAAGAC
* ** * *
75926632 ATGGTCTTACATTGGATCTCATAC-TAATGTC
66 ATAGTCTTACACGGGATCACAT-CTTAATGCC
* * * ** * * *
75926663 GATGCCATATCCCAAACGTGGTCTTATACGGGATCTTTTATCGATACCGATGCCATATCCTAGAC
1 AATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATACCAACGCCATATCCAAGAC
*
75926728 ATAGTCTTACACGGGATCACATCTTGATGCC
66 ATAGTCTTACACGGGATCACATCTTAATGCC
** *
75926759 AATGTTATATCCCAGATATGGTCTTATACGGGATCTCA
1 AATGCCATATCCCAGACATGGTCTTATACGGGATCTCA
75926797 ATACTTGTAA
Statistics
Matches: 107, Mismatches: 26, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
95 1 0.01
96 106 0.99
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (96 bp):
AATGCCATATCCCAGACATGGTCTTATACGGGATCTCATATCGATACCAACGCCATATCCAAGAC
ATAGTCTTACACGGGATCACATCTTAATGCC
Found at i:75926697 original size:48 final size:48
Alignment explanation
Indices: 75926567--75926796 Score: 167
Period size: 48 Copynumber: 4.8 Consensus size: 48
75926557 TAACGGTGCT
* * * *
75926567 AATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCC
1 AATGCCATATCCCAAACATGGTCTTATACGGGATCTCATATCAATGCC
* * * ** *
75926615 AACGCCATAT-CCAAGATATGGTCTTACATTGGATCTCATA-CTAATGTC
1 AATGCCATATCCCAA-ACATGGTCTTATACGGGATCTCATATC-AATGCC
* * ** * *
75926663 GATGCCATATCCCAAACGTGGTCTTATACGGGATCTTTTATCGATACC
1 AATGCCATATCCCAAACATGGTCTTATACGGGATCTCATATCAATGCC
* * * * * * * **
75926711 GATGCCATATCCTAGACATAGTCTTACACGGGATCACATCTTGATGCC
1 AATGCCATATCCCAAACATGGTCTTATACGGGATCTCATATCAATGCC
** * *
75926759 AATGTTATATCCCAGATATGGTCTTATACGGGATCTCA
1 AATGCCATATCCCAAACATGGTCTTATACGGGATCTCA
75926797 ATACTTGTAA
Statistics
Matches: 137, Mismatches: 41, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
47 4 0.03
48 128 0.93
49 5 0.04
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
AATGCCATATCCCAAACATGGTCTTATACGGGATCTCATATCAATGCC
Found at i:75927530 original size:46 final size:46
Alignment explanation
Indices: 75927465--75927735 Score: 321
Period size: 46 Copynumber: 5.9 Consensus size: 46
75927455 TTATCTTCGA
* * * * *
75927465 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
* * * * *
75927511 CATGTTGCCAAGGTATCTTTCAACCATTGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
*
75927557 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTC-TGT
* * *
75927603 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
* * * *
75927649 CATGTTTCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTC-TGT
* * *
75927695 CATGTTGCTATGGTATCTTTCTACCATGGTCTTACGCATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
75927736 CATTTCAGAA
Statistics
Matches: 194, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
45 5 0.03
46 185 0.95
47 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGT
Found at i:75927627 original size:92 final size:92
Alignment explanation
Indices: 75927465--75927728 Score: 368
Period size: 92 Copynumber: 2.9 Consensus size: 92
75927455 TTATCTTCGA
* * * * * *
75927465 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGTCATGTTGCCAAGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATGGTATCT
*
75927529 TTCAACCATTGTCTTATTCATTTCCCGT
65 TTCAACCATGGTCTTATTCATTTCCCGT
* *
75927557 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTT
*
75927622 TCAACCATGGTCTTATTCATTTCCTGT
66 TCAACCATGGTCTTATTCATTTCCCGT
* * * * *
75927649 CATGTTTCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCATGTTGCTATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTT
*
75927714 TCTACCATGGTCTTA
66 TCAACCATGGTCTTA
75927729 CGCATTTCAT
Statistics
Matches: 153, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
91 4 0.03
92 149 0.97
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTATCTT
TCAACCATGGTCTTATTCATTTCCCGT
Found at i:75927721 original size:138 final size:138
Alignment explanation
Indices: 75927470--75927738 Score: 367
Period size: 138 Copynumber: 1.9 Consensus size: 138
75927460 TTCGACATGA
* * *
75927470 TGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTCTGTCATGTTGCCAAGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATAGTCTTACTCATTTCCTGTCATGTTGCCAAGGTATCTTTCAAC
* ** * * * **
75927535 CATTGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
66 CATGGTCTTACACATCTCACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACGCATTTCA
75927600 TGTCACGT
131 TGTCACGT
* * * * *
75927608 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTTCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATAGTCTTACTCATTTCCTGTCATGTTGCCAAGGTATCTTTCAAC
* * *
75927673 CATGGTCTTACACATCTCATATCATGTTGCTATGGTATCTTTCTACCATGGTCTTACGCATTTCA
66 CATGGTCTTACACATCTCACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACGCATTTCA
75927738 T
131 T
75927739 TTCAGAAAGC
Statistics
Matches: 112, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
138 112 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATAGTCTTACTCATTTCCTGTCATGTTGCCAAGGTATCTTTCAAC
CATGGTCTTACACATCTCACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACGCATTTCA
TGTCACGT
Found at i:75936098 original size:49 final size:49
Alignment explanation
Indices: 75935891--75936134 Score: 256
Period size: 49 Copynumber: 4.9 Consensus size: 49
75935881 TAGACAAGGC
* * *
75935891 TATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
** * * *
75935940 TATCTGGTACATGTA-TAGCCTGCACTTAGTACTACGCACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * ** *
75935989 CATCTGATACACATAGTAGCTTCCACTTAATACTACACACATGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
75936040 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
75936089 TATCTGGTACACGTAGTAGCCTGCACTTAGTAATACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
75936135 TCACAATAGA
Statistics
Matches: 155, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
48 27 0.17
49 65 0.42
50 28 0.18
51 35 0.23
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:75942864 original size:18 final size:19
Alignment explanation
Indices: 75942834--75942870 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
75942824 TCAATAAATA
75942834 TTTTATATAAT-AATTTAG
1 TTTTATATAATAAATTTAG
75942852 TTTTA-ATAGATAAATTTAG
1 TTTTATATA-ATAAATTTAG
75942871 AGTTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.18
18 7 0.41
19 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (19 bp):
TTTTATATAATAAATTTAG
Found at i:75943010 original size:34 final size:34
Alignment explanation
Indices: 75942967--75943031 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
75942957 GGAGAGGTGT
*
75942967 GGTAGATGGTAATGAAAAGTTAAATGTGGGTAGG
1 GGTAGATGGTAATGAAAAGTTAAATGAGGGTAGG
** *
75943001 GGTAGATGGTCCTGAAAATTTAAATGAGGGT
1 GGTAGATGGTAATGAAAAGTTAAATGAGGGT
75943032 TTAGTAGAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.35, T:0.28
Consensus pattern (34 bp):
GGTAGATGGTAATGAAAAGTTAAATGAGGGTAGG
Found at i:75944581 original size:11 final size:11
Alignment explanation
Indices: 75944548--75944584 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
75944538 ATTAATTAAG
75944548 TAAAAATGAAA
1 TAAAAATGAAA
75944559 TAAATAAT--AA
1 TAAA-AATGAAA
75944569 TAAAAATGAAA
1 TAAAAATGAAA
75944580 TAAAA
1 TAAAA
75944585 TGGTGATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 3 0.13
10 6 0.26
11 11 0.48
12 3 0.13
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (11 bp):
TAAAAATGAAA
Found at i:75945303 original size:12 final size:11
Alignment explanation
Indices: 75945281--75945323 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
75945271 AATTTGAAAG
75945281 TATATAA-AAA
1 TATATAATAAA
75945291 TATATAAATAAA
1 TATAT-AATAAA
75945303 TATATAATAAA
1 TATATAATAAA
75945314 -ATGATAATAA
1 TAT-ATAATAA
75945324 TAAGGGTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 7 0.23
11 15 0.50
12 8 0.27
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
TATATAATAAA
Found at i:75945447 original size:15 final size:14
Alignment explanation
Indices: 75945420--75945451 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
75945410 TAAATCAGTT
75945420 TAATAGTATAATAA
1 TAATAGTATAATAA
75945434 TAATAGTGATAATAA
1 TAATAGT-ATAATAA
75945449 TAA
1 TAA
75945452 AAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.34
Consensus pattern (14 bp):
TAATAGTATAATAA
Found at i:75954493 original size:31 final size:31
Alignment explanation
Indices: 75954456--75954515 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
75954446 AGTTATTTAA
*
75954456 TTAAAAAATTATATTTTAATCATTAAACTAT
1 TTAAAAAATTATATTTAAATCATTAAACTAT
* *
75954487 TTAAAAATTTTTATTTAAATCATTAAACT
1 TTAAAAAATTATATTTAAATCATTAAACT
75954516 GTTTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (31 bp):
TTAAAAAATTATATTTAAATCATTAAACTAT
Found at i:75961915 original size:20 final size:21
Alignment explanation
Indices: 75961878--75961928 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
75961868 GAAAATTGTT
75961878 TAAAAAT-TCTTAAGAATTATA
1 TAAAAATAT-TTAAGAATTATA
75961899 TAAAAATATTTAA-AATTATA
1 TAAAAATATTTAAGAATTATA
*
75961919 -ATAAATATTT
1 TAAAAATATTT
75961929 GAATTGCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 9 0.32
20 7 0.25
21 11 0.39
22 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TAAAAATATTTAAGAATTATA
Found at i:75961933 original size:18 final size:20
Alignment explanation
Indices: 75961890--75961933 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
75961880 AAAATTCTTA
75961890 AGAATTATATAAAAATATTT
1 AGAATTATATAAAAATATTT
* *
75961910 AAAATTATA-ATAAATATTT
1 AGAATTATATAAAAATATTT
75961929 -GAATT
1 AGAATT
75961934 GCAAATTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 4 0.19
19 9 0.43
20 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (20 bp):
AGAATTATATAAAAATATTT
Found at i:75963178 original size:23 final size:22
Alignment explanation
Indices: 75963142--75963204 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 22
75963132 TTCTTTCAAT
* *
75963142 TTTTTTTATTTTTTTTATTTCT-
1 TTTTTTTCTATTTTTTATTT-TA
75963164 TTGTTTTTCTA-TTTTTATTTTA
1 TT-TTTTTCTATTTTTTATTTTA
*
75963186 TTTTTTTCTCTCTTTTTAT
1 TTTTTTTCTAT-TTTTTAT
75963205 GCACATATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 8 0.24
22 13 0.38
23 13 0.38
ACGTcount: A:0.10, C:0.08, G:0.02, T:0.81
Consensus pattern (22 bp):
TTTTTTTCTATTTTTTATTTTA
Found at i:75963192 original size:22 final size:23
Alignment explanation
Indices: 75963153--75963204 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
75963143 TTTTTTATTT
75963153 TTTTTATTTCTTTGTTTT-TCTA
1 TTTTTATTTCTTTGTTTTCTCTA
* *
75963175 TTTTTATTT-TATTTTTTTCTCTC
1 TTTTTATTTCT-TTGTTTTCTCTA
75963198 TTTTTAT
1 TTTTTAT
75963205 GCACATATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 15 0.58
23 10 0.38
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTTTATTTCTTTGTTTTCTCTA
Found at i:75963202 original size:31 final size:31
Alignment explanation
Indices: 75963144--75963202 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
75963134 CTTTCAATTT
* *
75963144 TTTTTATTTTTTTTATTTCTTTGTTTTTCTA
1 TTTTTATTTTTTTTATTTCTCTCTTTTTCTA
75963175 TTTTTATTTTATTTT-TTTCTCTCTTTTT
1 TTTTTATTTT-TTTTATTTCTCTCTTTTT
75963203 ATGCACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.81
Consensus pattern (31 bp):
TTTTTATTTTTTTTATTTCTCTCTTTTTCTA
Found at i:75963822 original size:3 final size:3
Alignment explanation
Indices: 75963814--75963856 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
75963804 TGATATTTTC
*
75963814 TAT TAT TA- TATT TAC TAT TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
75963857 ATACGTATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 28 0.80
4 5 0.14
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:75963840 original size:19 final size:19
Alignment explanation
Indices: 75963816--75963854 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75963806 ATATTTTCTA
75963816 TTATTA-TATTTACTATTAT
1 TTATTATTA-TTACTATTAT
*
75963835 TTATTATTATTATTATTAT
1 TTATTATTATTACTATTAT
75963854 T
1 T
75963855 ATATACGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTATTATTACTATTAT
Found at i:75963972 original size:27 final size:26
Alignment explanation
Indices: 75963880--75963973 Score: 86
Period size: 28 Copynumber: 3.5 Consensus size: 26
75963870 TACTTTTTAC
*
75963880 TATTT-TACATTATTATATTTATTATT
1 TATTTATATATTATTATATTTATT-TT
*
75963906 TATTTTAACATATTATTAT-TTTA-TTT
1 TA-TTT-ATATATTATTATATTTATTTT
* *
75963932 TCTTTATATCATTATTATACTTAGTTTT
1 TATTTATAT-ATTATTATATTTA-TTTT
75963960 TATTTATATATTAT
1 TATTTATATATTAT
75963974 ATTTTCTCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
24 3 0.05
25 11 0.20
26 8 0.15
27 9 0.16
28 15 0.27
29 9 0.16
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (26 bp):
TATTTATATATTATTATATTTATTTT
Found at i:75964229 original size:21 final size:18
Alignment explanation
Indices: 75964205--75964249 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 18
75964195 ATATTATGTA
75964205 TATGTATTTCTAATGCTATAT
1 TATGTATTTC--ATG-TATAT
75964226 TATGT-TTTCATGTATAT
1 TATGTATTTCATGTATAT
75964243 TATGTAT
1 TATGTAT
75964250 ATATTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.43
18 4 0.17
20 4 0.17
21 5 0.22
ACGTcount: A:0.27, C:0.07, G:0.11, T:0.56
Consensus pattern (18 bp):
TATGTATTTCATGTATAT
Found at i:75968813 original size:18 final size:19
Alignment explanation
Indices: 75968774--75968814 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
75968764 TTACAAAAAA
* *
75968774 AAAATTCAAAATAATTTTT
1 AAAATACAAAATAATTTAT
75968793 AAAATACAAAAT-ATTTAT
1 AAAATACAAAATAATTTAT
75968811 AAAA
1 AAAA
75968815 GTTCTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATACAAAATAATTTAT
Found at i:75977790 original size:21 final size:21
Alignment explanation
Indices: 75977765--75977809 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
75977755 TTATGTAATT
*
75977765 TATATTATATATATAATTAAATA
1 TATATTAT-TATA-ATTTAAATA
75977788 TATATTATTATAATTTAAATA
1 TATATTATTATAATTTAAATA
75977809 T
1 T
75977810 TAAAATACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 4 0.19
23 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATTATTATAATTTAAATA
Found at i:75981799 original size:21 final size:21
Alignment explanation
Indices: 75981770--75981818 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
75981760 TAACTCAAAT
75981770 TATT-TTTAAAATTATTATT-
1 TATTATTTAAAATTATTATTA
* *
75981789 TATCTATTTAAATTTTTTATTA
1 TAT-TATTTAAAATTATTATTA
75981811 TATTATTT
1 TATTATTT
75981819 GCTAGAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 3 0.12
20 1 0.04
21 18 0.72
22 3 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTATTTAAAATTATTATTA
Found at i:75992458 original size:93 final size:93
Alignment explanation
Indices: 75992345--75992516 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75992335 CGCCCATAAG
* *
75992345 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75992410 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75992438 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75992503 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75992517 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75992513 original size:46 final size:46
Alignment explanation
Indices: 75992338--75992513 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75992328 ATGTAACCGC
* * *
75992338 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75992384 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75992434 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75992477 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75992514 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76000020 original size:93 final size:93
Alignment explanation
Indices: 75999907--76000078 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75999897 CGCCCATAAG
* *
75999907 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75999972 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
76000000 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76000065 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76000079 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76000075 original size:46 final size:46
Alignment explanation
Indices: 75999900--76000075 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75999890 TGTAACCCGC
* * *
75999900 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75999946 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75999996 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
76000039 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
76000076 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76002238 original size:9 final size:8
Alignment explanation
Indices: 76002210--76002254 Score: 58
Period size: 7 Copynumber: 5.8 Consensus size: 8
76002200 GTTTTTTTTA
76002210 TAAAATA-
1 TAAAATAT
76002217 TAAAATA-
1 TAAAATAT
76002224 TAAAATAT
1 TAAAATAT
*
76002232 CTAAAATAA
1 -TAAAATAT
76002241 TAAAATAT
1 TAAAATAT
76002249 TAAAAT
1 TAAAAT
76002255 TATCAATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
7 14 0.41
8 13 0.38
9 7 0.21
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (8 bp):
TAAAATAT
Found at i:76002238 original size:16 final size:15
Alignment explanation
Indices: 76002208--76002254 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
76002198 TAGTTTTTTT
76002208 TATAAAATA-TAAAA
1 TATAAAATATTAAAA
76002222 TATAAAATATCTAAAA
1 TATAAAATAT-TAAAA
76002238 TAATAAAATATTAAAA
1 T-ATAAAATATTAAAA
76002254 T
1 T
76002255 TATCAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.30
16 12 0.40
17 9 0.30
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (15 bp):
TATAAAATATTAAAA
Found at i:76005890 original size:14 final size:14
Alignment explanation
Indices: 76005852--76005897 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
76005842 TTCCACTAAC
*
76005852 TTTGGTTAATTAAAG
1 TTTGATTAATT-AAG
* *
76005867 TTTAATTAATTAAT
1 TTTGATTAATTAAG
76005881 TTTGATTAATTAAG
1 TTTGATTAATTAAG
76005895 TTT
1 TTT
76005898 AATCCAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (14 bp):
TTTGATTAATTAAG
Found at i:76005906 original size:29 final size:29
Alignment explanation
Indices: 76005852--76005907 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
76005842 TTCCACTAAC
* *
76005852 TTTGGTTAATTAAAGTTTAATTAATTAAT
1 TTTGATTAATTAAAGTTTAATCAATTAAT
76005881 TTTGATTAATT-AAGTTTAATCCAATTA
1 TTTGATTAATTAAAGTTTAAT-CAATTA
76005908 TCTAAAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.50
Consensus pattern (29 bp):
TTTGATTAATTAAAGTTTAATCAATTAAT
Found at i:76008524 original size:28 final size:26
Alignment explanation
Indices: 76008493--76008552 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
76008483 TAAAACTCTA
76008493 AAATA-GAATATACATAAAGATTTAAAAT
1 AAATATGAATATA-A-AAA-ATTTAAAAT
*
76008521 AAATCATGTATATAAAAAATTTAAAAT
1 AAAT-ATGAATATAAAAAATTTAAAAT
76008548 AAATA
1 AAATA
76008553 ATGTAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
26 1 0.03
27 13 0.45
28 7 0.24
29 2 0.07
30 6 0.21
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (26 bp):
AAATATGAATATAAAAAATTTAAAAT
Found at i:76009348 original size:26 final size:22
Alignment explanation
Indices: 76009315--76009371 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
76009305 CAATAATAGA
*
76009315 ATTAA-TAATAAAAATAAAGTTG
1 ATTAATTAATAAAAA-ATAGTTG
*
76009337 ATTAATTAATAAAAAATGGTTG
1 ATTAATTAATAAAAAATAGTTG
76009359 ATTAATTAA-AAAA
1 ATTAATTAATAAAA
76009372 GGACTATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 19 0.59
23 9 0.28
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (22 bp):
ATTAATTAATAAAAAATAGTTG
Found at i:76010843 original size:26 final size:25
Alignment explanation
Indices: 76010814--76010884 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 25
76010804 GAAAATTTTG
76010814 AATAGATAATATATGAAATAATCTAA
1 AATA-ATAATATATGAAATAATCTAA
* * * *
76010840 AATAAAATATATATAAAAATATTTTAA
1 AATAATA-ATATAT-GAAATAATCTAA
76010867 AATAAATAATATATGAAA
1 AAT-AATAATATATGAAA
76010885 GGTTTAAAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
25 2 0.06
26 13 0.36
27 18 0.50
28 3 0.08
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (25 bp):
AATAATAATATATGAAATAATCTAA
Found at i:76010915 original size:25 final size:24
Alignment explanation
Indices: 76010710--76010917 Score: 105
Period size: 25 Copynumber: 8.2 Consensus size: 24
76010700 GTATAAAAAC
* * **
76010710 TTAAAATAAATAATAAAAGAGCTT
1 TTAAAATAAATAATATATGAAATT
* *
76010734 TTAAAATAAACAATATATATAAATT
1 TTAAAATAAATAATATAT-GAAATT
* * * *
76010759 TTAAAATTAATAACATATAAACAGT
1 TTAAAATAAATAATATATGAA-ATT
* * *
76010784 TTAAATTAAACACTATACATGAAAATT
1 TTAAAATAAATA--ATATATG-AAATT
* *
76010811 TT-GAATAGATAATATATGAAATAAT
1 TTAAAATAAATAATATATGAAAT--T
* **
76010836 CTAAAATAAAATATATATAAAAATATT
1 TTAAAAT-AAATA-ATATATGAA-ATT
*
76010863 TTAAAATAAATAATATATGAAAGGT
1 TTAAAATAAATAATATATGAAA-TT
*
76010888 TTAAAGTAAATAATA-ATGATGAATT
1 TTAAAATAAATAATATATGA--AATT
76010913 TTAAA
1 TTAAA
76010918 CGATTAACAT
Statistics
Matches: 136, Mismatches: 34, Indels: 27
0.69 0.17 0.14
Matches are distributed among these distances:
23 4 0.03
24 28 0.21
25 59 0.43
26 15 0.11
27 19 0.14
28 9 0.07
29 2 0.01
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (24 bp):
TTAAAATAAATAATATATGAAATT
Found at i:76013113 original size:2 final size:2
Alignment explanation
Indices: 76013106--76013132 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76013096 TTCAAACATG
76013106 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
76013133 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:76014182 original size:11 final size:11
Alignment explanation
Indices: 76014168--76014206 Score: 51
Period size: 11 Copynumber: 3.3 Consensus size: 11
76014158 TTGTTTTTTA
76014168 TTTTTTAAAAT
1 TTTTTTAAAAT
76014179 TTTTTTAATAATT
1 TTTTTTAA-AA-T
76014192 GTTTTTTAAAAT
1 -TTTTTTAAAAT
76014204 TTT
1 TTT
76014207 ATTTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.44
12 3 0.12
13 3 0.12
14 8 0.32
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (11 bp):
TTTTTTAAAAT
Found at i:76019709 original size:26 final size:24
Alignment explanation
Indices: 76019671--76019736 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 24
76019661 GCTAAAATCC
*
76019671 TTTTTTGTCTCATTTCTGGTGTAGGG
1 TTTTTT-TTTCATTTCTGGTGTA-GG
*
76019697 TATTTTTTTTCATTGCTGGTGTAGG
1 T-TTTTTTTTCATTTCTGGTGTAGG
*
76019722 TTTTTTTTTCTTTTC
1 TTTTTTTTTCATTTC
76019737 ATAGATAGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 12 0.34
25 3 0.09
26 15 0.43
27 5 0.14
ACGTcount: A:0.08, C:0.11, G:0.20, T:0.62
Consensus pattern (24 bp):
TTTTTTTTTCATTTCTGGTGTAGG
Found at i:76023231 original size:16 final size:16
Alignment explanation
Indices: 76023206--76023237 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76023196 TGTTAATATA
76023206 TCTTTCTTTCTTTTTT
1 TCTTTCTTTCTTTTTT
*
76023222 TCTTTGTTTCTTTTTT
1 TCTTTCTTTCTTTTTT
76023238 ATTTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (16 bp):
TCTTTCTTTCTTTTTT
Found at i:76025902 original size:81 final size:81
Alignment explanation
Indices: 76025792--76026135 Score: 487
Period size: 81 Copynumber: 4.2 Consensus size: 81
76025782 CTTTGACATA
*** *
76025792 TATTCATCCAAGGGTTAAAAGAAGTATTACAAACTAGTATAATACAGGACAGGATTCTTAATGTT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
76025857 TTTGACATATAACTAG
66 TTTGACATATAACTAG
* ** *
76025873 CATTCATCTGAGGGTTAAAAGATCCATTACGAACTAGTATCATACA-GATCAGGATTCTTAATGT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGA-CAGGATTCTTAATGT
* *
76025937 TTTTCAACATATAACTCG
65 TTTT-GACATATAACTAG
* *
76025955 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACATGACTCTTAATGTT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
* *
76026020 TTAGACGTATAACTCA-
66 TTTGACATATAACT-AG
* *
76026036 TATTCATCCCA-GGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATTTT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
*
76026100 TTTGACATATAACTCG
66 TTTGACATATAACTAG
76026116 TATTCATCCAAGGGTTAAAA
1 TATTCATCCAAGGGTTAAAA
76026136 AAGTCACCTT
Statistics
Matches: 229, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
80 74 0.32
81 84 0.37
82 69 0.30
83 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (81 bp):
TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
TTTGACATATAACTAG
Found at i:76026002 original size:163 final size:161
Alignment explanation
Indices: 76025792--76026135 Score: 512
Period size: 163 Copynumber: 2.1 Consensus size: 161
76025782 CTTTGACATA
** *
76025792 TATTCATCCAAGGGTTAAAAGAAGTATTACAAACTAGTATAATACAGGACAGGATTCTTAATGTT
1 TATTCATCCAAGGGTTAAAAGAACCATTACAAACTAGTATAATACAGGACAGGACTCTTAATGTT
* ** *
76025857 TTTGACATATAACT-AGCATTCATCTGAGGGTTAAAAGATCCATTACGAACTAGTATCATACA-G
66 TTAGACATATAACTCA-CATTCATCCCA-GGTTAAAAGATCCATTACAAACTAGTATCATACAGG
76025920 ATCAGGATTCTTAATGTTTTTCAACATATAACTCG
129 A-CAGGATTCTTAAT-TTTTTCAACATATAACTCG
* * *
76025955 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACATGACTCTTAATGTT
1 TATTCATCCAAGGGTTAAAAGAACCATTACAAACTAGTATAATACAGGACAGGACTCTTAATGTT
* *
76026020 TTAGACGTATAACTCATATTCATCCCAGGTTAAAAGATCCATTACAAACTAGTATCATACAGGAC
66 TTAGACATATAACTCACATTCATCCCAGGTTAAAAGATCCATTACAAACTAGTATCATACAGGAC
**
76026085 AGGATTCTTAATTTTTTTGACATATAACTCG
131 AGGATTCTTAATTTTTTCAACATATAACTCG
76026116 TATTCATCCAAGGGTTAAAA
1 TATTCATCCAAGGGTTAAAA
76026136 AAGTCACCTT
Statistics
Matches: 165, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
161 37 0.22
162 46 0.28
163 81 0.49
164 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (161 bp):
TATTCATCCAAGGGTTAAAAGAACCATTACAAACTAGTATAATACAGGACAGGACTCTTAATGTT
TTAGACATATAACTCACATTCATCCCAGGTTAAAAGATCCATTACAAACTAGTATCATACAGGAC
AGGATTCTTAATTTTTTCAACATATAACTCG
Found at i:76029401 original size:21 final size:21
Alignment explanation
Indices: 76029375--76029414 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76029365 ACGAATTGAT
*
76029375 AACAACAAAGACCAAAACAGC
1 AACAACAAACACCAAAACAGC
*
76029396 AACAACAAACTCCAAAACA
1 AACAACAAACACCAAAACA
76029415 TGGAGATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.30, G:0.05, T:0.03
Consensus pattern (21 bp):
AACAACAAACACCAAAACAGC
Found at i:76030838 original size:16 final size:16
Alignment explanation
Indices: 76030814--76030844 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76030804 ATTAAAATTG
*
76030814 TTATGAAATATATTTA
1 TTATAAAATATATTTA
76030830 TTATAAAATATATTT
1 TTATAAAATATATTT
76030845 TTAAAATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TTATAAAATATATTTA
Found at i:76031719 original size:28 final size:28
Alignment explanation
Indices: 76031686--76031742 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
76031676 CTAATATAAG
76031686 AACAAACTCATAAGATCTGATAATATCT
1 AACAAACTCATAAGATCTGATAATATCT
* *
76031714 AACAAACTCATAATATTTGATAATATCT
1 AACAAACTCATAAGATCTGATAATATCT
76031742 A
1 A
76031743 TTCTCTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (28 bp):
AACAAACTCATAAGATCTGATAATATCT
Found at i:76032663 original size:21 final size:21
Alignment explanation
Indices: 76032637--76032689 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
76032627 CGCTGTTTCT
*
76032637 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
76032658 AATCTCACTGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
76032679 AATCTCACCGC
1 AATCTCACCGC
76032690 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:76035967 original size:18 final size:16
Alignment explanation
Indices: 76035944--76035979 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
76035934 AATTTATTTG
76035944 AATTTTTTATATATTTTT
1 AATTTTTTA-A-ATTTTT
76035962 AATTTTTTAAATTTTT
1 AATTTTTTAAATTTTT
76035978 AA
1 AA
76035980 AGTTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
AATTTTTTAAATTTTT
Found at i:76036236 original size:17 final size:17
Alignment explanation
Indices: 76036216--76036249 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76036206 AAATAGATTT
76036216 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
76036233 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
76036250 ACTTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:76037499 original size:27 final size:27
Alignment explanation
Indices: 76037461--76037514 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
76037451 TATTAAGAGT
*
76037461 TTGTTTAGTAGTGTTTAAAAAAAAGTA
1 TTGTTTAGTAGTGCTTAAAAAAAAGTA
76037488 TTGTTTAGTAGTGCTTAAAAAAAAGTA
1 TTGTTTAGTAGTGCTTAAAAAAAAGTA
76037515 GTTTTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.39
Consensus pattern (27 bp):
TTGTTTAGTAGTGCTTAAAAAAAAGTA
Found at i:76037869 original size:33 final size:35
Alignment explanation
Indices: 76037832--76037928 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
76037822 ATGGTTATAT
76037832 TTAAATATTTAAAATATAGTTTATATATT-C-TAA
1 TTAAATATTTAAAATATAGTTTATATATTGCTTAA
* *
76037865 TTAAAT-TTTATAA-ATAGTTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAGTT--TATATATTGCTTAA
*
76037900 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATAGTTTATATATT
76037929 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.14
35 10 0.20
37 5 0.10
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATAGTTTATATATTGCTTAA
Found at i:76040151 original size:15 final size:16
Alignment explanation
Indices: 76040122--76040160 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
76040112 AAGTTTGATA
76040122 ATTTAAAAAATTAAGT
1 ATTTAAAAAATTAAGT
*
76040138 GTTTAAAAAA-TAAGT
1 ATTTAAAAAATTAAGT
76040153 ATTTAAAA
1 ATTTAAAA
76040161 GTTAAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTTAAAAAATTAAGT
Found at i:76040166 original size:15 final size:15
Alignment explanation
Indices: 76040122--76040167 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
76040112 AAGTTTGATA
76040122 ATTTAAAAAATTAAGT
1 ATTT-AAAAATTAAGT
* *
76040138 GTTTAAAAAATAAGT
1 ATTTAAAAATTAAGT
*
76040153 ATTTAAAAGTTAAGT
1 ATTTAAAAATTAAGT
76040168 TATAAAATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 22 0.88
16 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (15 bp):
ATTTAAAAATTAAGT
Found at i:76040989 original size:21 final size:21
Alignment explanation
Indices: 76040957--76040996 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
76040947 TTAGTTACTA
*
76040957 TTTAAGAATTTAATATTTATT
1 TTTAAGAATTTAAAATTTATT
76040978 TTTAA-AATTTTAAAATTTA
1 TTTAAGAA-TTTAAAATTTA
76040997 AATTTAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTAAGAATTTAAAATTTATT
Found at i:76041002 original size:21 final size:21
Alignment explanation
Indices: 76040956--76041003 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
76040946 TTTAGTTACT
* *
76040956 ATTTAAGAATTTAATATTTAT
1 ATTTAAGAATTTAAAATTTAA
*
76040977 TTTTAA-AATTTTAAAATTTAA
1 ATTTAAGAA-TTTAAAATTTAA
76040998 ATTTAA
1 ATTTAA
76041004 TTGTTAACAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
ATTTAAGAATTTAAAATTTAA
Found at i:76044086 original size:4 final size:4
Alignment explanation
Indices: 76044077--76044105 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
76044067 GATTTACAGG
76044077 TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA T
76044106 TTACAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:76048394 original size:38 final size:38
Alignment explanation
Indices: 76048321--76048432 Score: 134
Period size: 38 Copynumber: 2.9 Consensus size: 38
76048311 ATTTAATGAT
* * *
76048321 TACATGTTAAACATGTCTATTGCTAGTAATGAATTGAG
1 TACATGTTAAATATGTCTATTACTAGTGATGAATTGAG
** * *
76048359 TGTATGTAAAATATGTTTATTACTAGTGATGAATTGAG
1 TACATGTTAAATATGTCTATTACTAGTGATGAATTGAG
** *
76048397 TACATGTTAAATATGTCTATTTTTAGTGTTGAATTG
1 TACATGTTAAATATGTCTATTACTAGTGATGAATTG
76048433 TTCTATTACA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (38 bp):
TACATGTTAAATATGTCTATTACTAGTGATGAATTGAG
Found at i:76048923 original size:17 final size:18
Alignment explanation
Indices: 76048890--76048924 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
76048880 ATAAAAATAT
*
76048890 ATAACCCAATTAGCCCAA
1 ATAACCCAATTACCCCAA
76048908 ATAACCC-ATTACCCCAA
1 ATAACCCAATTACCCCAA
76048925 GCCCAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.43, C:0.37, G:0.03, T:0.17
Consensus pattern (18 bp):
ATAACCCAATTACCCCAA
Found at i:76057693 original size:5 final size:5
Alignment explanation
Indices: 76057683--76057714 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
76057673 TTGTGTGTTC
76057683 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
76057715 TCACAGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:76057697 original size:9 final size:9
Alignment explanation
Indices: 76057683--76057713 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
76057673 TTGTGTGTTC
76057683 TTTATTTTA
1 TTTATTTTA
76057692 TTTATTTTA
1 TTTATTTTA
76057701 TTTTATTTTA
1 -TTTATTTTA
76057711 TTT
1 TTT
76057714 TTCACAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:76061047 original size:5 final size:5
Alignment explanation
Indices: 76061037--76061064 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
76061027 TTGTGTGTTC
76061037 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
76061065 CACACAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:76064127 original size:18 final size:18
Alignment explanation
Indices: 76064104--76064145 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
76064094 TTAGTTGGGC
76064104 AAGAATCCATCTCGAGTT
1 AAGAATCCATCTCGAGTT
76064122 AAGAATCCATCTCGAGTT
1 AAGAATCCATCTCGAGTT
76064140 AAGAAT
1 AAGAAT
76064146 TTACTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (18 bp):
AAGAATCCATCTCGAGTT
Found at i:76066149 original size:25 final size:25
Alignment explanation
Indices: 76066126--76066173 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76066116 AATTTATATT
* *
76066126 TATA-ATAAA-ATAATTATATAATA
1 TATATATAAATATAAGTATAAAATA
76066149 TATATATAAATATAAGTATAAAATA
1 TATATATAAATATAAGTATAAAATA
76066174 AGTAATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 5 0.24
25 12 0.57
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
TATATATAAATATAAGTATAAAATA
Found at i:76066425 original size:20 final size:21
Alignment explanation
Indices: 76066395--76066434 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
76066385 AATATGAAAG
76066395 TATACATATGTAAAAATAATA
1 TATACATATGTAAAAATAATA
*
76066416 TATA-ATATGTATAAATAAT
1 TATACATATGTAAAAATAAT
76066435 TAATAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (21 bp):
TATACATATGTAAAAATAATA
Found at i:76067107 original size:19 final size:19
Alignment explanation
Indices: 76067072--76067169 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
76067062 AGATTACAAG
76067072 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
76067093 ATCATATCTAAGATTACAT
1 ATCATATCTAAGATTGCAT
76067112 ATCATATCTAAGATT--AT
1 ATCATATCTAAGATTGCAT
76067129 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76067148 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76067167 ATC
1 ATC
76067170 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:76067179 original size:36 final size:38
Alignment explanation
Indices: 76067061--76067169 Score: 159
Period size: 36 Copynumber: 2.8 Consensus size: 38
76067051 TTAAATCTCC
*
76067061 AAGATTACAAGATCATATCTTCAAGATTGCATATCATATCT
1 AAGATTAC-ATATCATATC-T-AAGATTGCATATCATATCT
76067102 AAGATTACATATCATATCTAAGATT--ATATCATATCT
1 AAGATTACATATCATATCTAAGATTGCATATCATATCT
*
76067138 AAGATTGCATATCATATCTAAGATTGCATATC
1 AAGATTACATATCATATCTAAGATTGCATATC
76067170 CTTAAAGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
36 35 0.55
38 11 0.17
39 1 0.02
40 9 0.14
41 8 0.12
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (38 bp):
AAGATTACATATCATATCTAAGATTGCATATCATATCT
Found at i:76068058 original size:205 final size:205
Alignment explanation
Indices: 76067530--76068035 Score: 913
Period size: 205 Copynumber: 2.5 Consensus size: 205
76067520 CTGCTTCTTT
* *
76067530 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAACGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGA
76067595 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* *
76067660 CTGCTTCAGTATAAACATCTAAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGAT
131 CTACTTCAGTATAAACATCTAAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGAA
76067725 GCCAGACTTC
196 GCCAGACTTC
*
76067735 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGA
76067800 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
* * *
76067865 CTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTGTGTGTCTGCCCTTCGTCGAAGTGGAGAA
131 CTACTTCAGTATAAACATCTAAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGAA
76067930 GCCAGACTTC
196 GCCAGACTTC
* *
76067940 GATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGA
*
76068005 AAGCCAAATCAGCTATGTCTTCGATCTGCTC
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTC
76068036 TCTGCCAATA
Statistics
Matches: 289, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
205 289 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (205 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
CTACTTCAGTATAAACATCTAAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGAA
GCCAGACTTC
Found at i:76068073 original size:44 final size:44
Alignment explanation
Indices: 76068007--76068114 Score: 162
Period size: 44 Copynumber: 2.4 Consensus size: 44
76067997 ACACGTGAAA
* *
76068007 GCCAAATCAGCTATGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTCTGACAATACAGAGAT
*
76068053 GCCAAATCTGGTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
76068097 GCCAACTCTGCTATCTTC
1 GCCAAATCTGCTATCTTC
76068115 AACTTGTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 46 0.81
46 11 0.19
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:76068142 original size:44 final size:43
Alignment explanation
Indices: 76068045--76068497 Score: 318
Period size: 44 Copynumber: 10.3 Consensus size: 43
76068035 CTCTGCCAAT
* * * * * *
76068045 ACAGAGATGCCAAATCTGGTATCTTCGATCTGCTCTCTGA-CAAT
1 ACAGGGATGCC-AATCTGATATCTTCGATCTGTTCCCT-ATAAAC
* * *
76068089 ACAGAGATGCCAACTCTGCTATCTTC-AACTTGTTCCCTATAAAC
1 ACAGGGATGCCAA-TCTGATATCTTCGATC-TGTTCCCTATAAAC
* * * *
76068133 ACAGGGATGCC-ATGCTGAAATCCTT-GATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAT-CTGATAT-CTTCGATCTG-TTCCCTATAAAC
76068177 ACA-GGAGTGCCAGATCT-ATTATCTTCGATCTGTTCCCTATAAAC
1 ACAGGGA-TGCCA-ATCTGA-TATCTTCGATCTGTTCCCTATAAAC
* * *
76068221 ACAGGGATGCCAAATCTGCTATCTT-TAACTTGTTCCCTATAAAC
1 ACAGGGATGCC-AATCTGATATCTTCGATC-TGTTCCCTATAAAC
* * * * *
76068265 ACAGGGATGCC-ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAT-CTGATATCTTCGATCTG-TTCCCTATAAAC
** * *
76068309 ACA-TTAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAAC
1 ACAGGGA-TGCCA-ATCTGATATCTTCGATCTGTTCCCTATAAAC
* *
76068353 ACAGGGATGCCAAATCT-ATTATCTTC-AACTTGTTCCCTATAAAT
1 ACAGGGATGCC-AATCTGA-TATCTTCGATC-TGTTCCCTATAAAC
* * * *
76068397 ACAGGGATGCC-ATGCTGAAATCTTCGATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAT-CTGATATCTTCGATCTG-TTCCCTATAAAC
* * *
76068441 ACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAAC
1 ACAGGGATGCCA-ATCTGATATCTTCGATCTGTTCCCTATAAAC
76068485 ACAGGGATGCCAA
1 ACAGGGATGCCAA
76068498 ATCTTGTTTC
Statistics
Matches: 319, Mismatches: 58, Indels: 65
0.72 0.13 0.15
Matches are distributed among these distances:
42 5 0.02
43 41 0.13
44 222 0.70
45 45 0.14
46 6 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (43 bp):
ACAGGGATGCCAATCTGATATCTTCGATCTGTTCCCTATAAAC
Found at i:76068294 original size:132 final size:132
Alignment explanation
Indices: 76068058--76068501 Score: 701
Period size: 132 Copynumber: 3.4 Consensus size: 132
76068048 GAGATGCCAA
* * * * * * *
76068058 ATCTGGTATCTTCGATCTGCTCTCTGA-CAATACAGAGATGCCAACTCTGCTATCTTCAACTTGT
1 ATCTGTTATCTTCGATCTGTTCCCT-ATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
* *
76068122 TCCCTATAAACACAGGGATGCCATGCTGAAATCCTTGATCTGCTTCGCTGTAAGCACAGGAGTGC
65 TCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGT
76068187 CAG
130 CAG
* *
76068190 ATCTATTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTTAACTTGTT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
**
76068255 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACATTAGTGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
76068320 AG
131 AG
**
76068322 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTATTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
* * *
76068387 CCCTATAAATACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
76068452 AG
131 AG
*
76068454 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
76068502 TGTTTCTTTG
Statistics
Matches: 288, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 287 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
AG
Found at i:76069417 original size:7 final size:7
Alignment explanation
Indices: 76069384--76069415 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
76069374 GGCCTCTCTA
76069384 TTTTTCT
1 TTTTTCT
76069391 TTTTTCT
1 TTTTTCT
76069398 TTTTTCT
1 TTTTTCT
76069405 TTTTT-T
1 TTTTTCT
76069411 TTTTT
1 TTTTT
76069416 TTGAAATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTCT
Found at i:76074363 original size:19 final size:19
Alignment explanation
Indices: 76074335--76074388 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
76074325 CGAAACCATT
* *
76074335 TCTAAAATTGCGTATCATA
1 TCTAAGATTGCATATCATA
76074354 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76074373 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
76074389 CTTAAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76077103 original size:22 final size:22
Alignment explanation
Indices: 76077075--76077119 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
76077065 AAAGAGAGGA
76077075 AGAAGAAATAAGTTTGAATGGG
1 AGAAGAAATAAGTTTGAATGGG
76077097 AGAAGAAATAAGTTTGAATGGG
1 AGAAGAAATAAGTTTGAATGGG
76077119 A
1 A
76077120 AAAAAGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (22 bp):
AGAAGAAATAAGTTTGAATGGG
Found at i:76085719 original size:22 final size:21
Alignment explanation
Indices: 76085693--76085739 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
76085683 GAATCTATTG
* *
76085693 TTTTGTTGTTGTTTTGCTACTA
1 TTTTGTTGTTATATTGCTA-TA
76085715 TTTTGTTGTTATATTGCTATA
1 TTTTGTTGTTATATTGCTATA
76085736 TTTT
1 TTTT
76085740 CTTATTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.13, C:0.06, G:0.15, T:0.66
Consensus pattern (21 bp):
TTTTGTTGTTATATTGCTATA
Found at i:76085751 original size:22 final size:22
Alignment explanation
Indices: 76085706--76085747 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
76085696 TGTTGTTGTT
* *
76085706 TTGCTACTATTTTGTTGTTATA
1 TTGCTACTATTTTCTTATTATA
76085728 TTGCTA-TATTTTCTTATTAT
1 TTGCTACTATTTTCTTATTAT
76085748 TATTTGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.62
Consensus pattern (22 bp):
TTGCTACTATTTTCTTATTATA
Found at i:76086973 original size:17 final size:17
Alignment explanation
Indices: 76086951--76086983 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76086941 TGACCGTGCA
76086951 GTGAAGCAATGAAGAAT
1 GTGAAGCAATGAAGAAT
*
76086968 GTGAAGCAGTGAAGAA
1 GTGAAGCAATGAAGAA
76086984 AGAAAGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.33, T:0.15
Consensus pattern (17 bp):
GTGAAGCAATGAAGAAT
Found at i:76090870 original size:18 final size:19
Alignment explanation
Indices: 76090847--76090901 Score: 76
Period size: 18 Copynumber: 2.8 Consensus size: 19
76090837 AATATAATGC
76090847 AAAAAAATAATTTACAT-A
1 AAAAAAATAATTTACATAA
*
76090865 AAAAAAGTAATTTACATAA
1 AAAAAAATAATTTACATAA
76090884 AAAATAAACTAATTTACA
1 AAAA-AAA-TAATTTACA
76090902 ATACAAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 16 0.50
19 5 0.16
20 2 0.06
21 9 0.28
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAAAATAATTTACATAA
Found at i:76093653 original size:26 final size:29
Alignment explanation
Indices: 76093623--76093684 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 29
76093613 ACTAATAAAT
76093623 TAATTT-TAAAATAATTACT-AAC-ACAAA
1 TAATTTATAAAATAATT-CTAAACTACAAA
*
76093650 -AATTTATCAAATAATTCTAAACTACAAA
1 TAATTTATAAAATAATTCTAAACTACAAA
76093678 TAATTTA
1 TAATTTA
76093685 ATTTTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 7 0.23
27 12 0.40
28 5 0.17
29 6 0.20
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.35
Consensus pattern (29 bp):
TAATTTATAAAATAATTCTAAACTACAAA
Found at i:76098445 original size:20 final size:19
Alignment explanation
Indices: 76098417--76098459 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
76098407 CATCACATAA
76098417 AAAACTATTTATAATAAAAT
1 AAAACTATTT-TAATAAAAT
* **
76098437 AAAATTATTTTTTTAAAAT
1 AAAACTATTTTAATAAAAT
76098456 AAAA
1 AAAA
76098460 GAAAATATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAACTATTTTAATAAAAT
Found at i:76105967 original size:13 final size:14
Alignment explanation
Indices: 76105944--76105972 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
76105934 TAAATTGATT
76105944 AAGATAATAAAATA
1 AAGATAATAAAATA
76105958 AAGA-AATAAAATA
1 AAGATAATAAAATA
76105971 AA
1 AA
76105973 TGGGTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAGATAATAAAATA
Found at i:76106718 original size:23 final size:23
Alignment explanation
Indices: 76106692--76106743 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
76106682 TAGAATTTTA
76106692 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
76106715 CTAAATATTATCATTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
76106738 CAAAAT
1 CTAAAT
76106744 TTAAAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:76107486 original size:23 final size:24
Alignment explanation
Indices: 76107425--76107487 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
76107415 TAAAATTAAA
*
76107425 ATTTTGATATGTTTGTATATGATCAG
1 ATTTTGATAT-ATT-TATATGATCAG
*
76107451 ATTTGTG-TA-ATTTATGTGATC-G
1 ATTT-TGATATATTTATATGATCAG
76107473 ATTTTGATATATTTA
1 ATTTTGATATATTTA
76107488 GTTTCTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 2 0.06
22 7 0.22
23 13 0.41
24 2 0.06
26 6 0.19
27 2 0.06
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.52
Consensus pattern (24 bp):
ATTTTGATATATTTATATGATCAG
Found at i:76116521 original size:15 final size:16
Alignment explanation
Indices: 76116490--76116522 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
76116480 AAATCTTAAA
76116490 ATATTTACATATATTT
1 ATATTTACATATATTT
*
76116506 ATATTTA-ATATTTTT
1 ATATTTACATATATTT
76116521 AT
1 AT
76116523 GTGATTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTTACATATATTT
Found at i:76117012 original size:14 final size:14
Alignment explanation
Indices: 76116993--76117022 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76116983 TTATTATTCA
76116993 TAAAAAATTAATAAT
1 TAAAAAA-TAATAAT
76117008 TAAAAAATAATAAT
1 TAAAAAATAATAAT
76117022 T
1 T
76117023 TTATCTTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAAAATAATAAT
Found at i:76121879 original size:7 final size:7
Alignment explanation
Indices: 76121867--76121898 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
76121857 ATAATAAAAT
76121867 ATATAAA
1 ATATAAA
76121874 ATATAAA
1 ATATAAA
76121881 ATATAAA
1 ATATAAA
*
76121888 ATATCAA
1 ATATAAA
76121895 ATAT
1 ATAT
76121899 TAGAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (7 bp):
ATATAAA
Found at i:76121909 original size:23 final size:24
Alignment explanation
Indices: 76121855--76121909 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 24
76121845 ATAATGATGT
76121855 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATATAAAATATA
* *
76121879 AAAT-AT-AAA-ATATCAAATATTA
1 GAATAATAAAATATATAAAATA-TA
76121901 GAATAATAA
1 GAATAATAA
76121910 TAATTAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
21 9 0.36
22 8 0.32
23 4 0.16
24 4 0.16
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (24 bp):
GAATAATAAAATATATAAAATATA
Found at i:76122068 original size:20 final size:21
Alignment explanation
Indices: 76122017--76122072 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
76122007 ATACTACATC
76122017 AATATGTACAT-ATATAAAAA
1 AATATGTACATAATATAAAAA
* * *
76122037 AATACGT-GATAATAT-TAAA
1 AATATGTACATAATATAAAAA
76122056 AATATGTACATAATATA
1 AATATGTACATAATATA
76122073 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AATATGTACATAATATAAAAA
Found at i:76122144 original size:29 final size:29
Alignment explanation
Indices: 76122104--76122170 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
76122094 TATAGTTAAG
*
76122104 ATATATACATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* *
76122133 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
76122162 ATACATAAA
1 ATATATAAA
76122171 ATAGTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:76122161 original size:25 final size:25
Alignment explanation
Indices: 76122045--76122264 Score: 129
Period size: 25 Copynumber: 9.0 Consensus size: 25
76122035 AAAATACGTG
* *
76122045 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
76122070 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
76122095 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
76122117 ATAACATGTAAAATATATATATAAATAAT
1 ATAATAT-T--AA-AGATATATACATAAT
*
76122146 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
76122171 ATAGTATAAATATATATATACGTAAT
1 ATAATATTAA-AGATATATACATAAT
* *
76122197 ATAA-ATTTAA-A-ATATACCTAAT
1 ATAATATTAAAGATATATACATAAT
* *
76122219 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
76122241 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
76122264 A
1 A
76122265 ACAAAAAAAG
Statistics
Matches: 152, Mismatches: 30, Indels: 28
0.72 0.14 0.13
Matches are distributed among these distances:
21 4 0.03
22 39 0.26
23 17 0.11
24 8 0.05
25 47 0.31
26 17 0.11
28 2 0.01
29 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:76122257 original size:22 final size:22
Alignment explanation
Indices: 76122193--76122264 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
76122183 TATATATACG
*
76122193 TAATATAA-ATTTA-AAATATA
1 TAATATAATATTAAGAAATATA
* *
76122213 CCTAATATATTA-AAAGAATATATA
1 --TAATATAATATTAAGAA-ATATA
76122237 TAATATAATATTAAGAAATATAA
1 TAATATAATATTAAGAAATAT-A
76122260 TAATA
1 TAATA
76122265 ACAAAAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
22 21 0.52
23 14 0.35
24 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (22 bp):
TAATATAATATTAAGAAATATA
Found at i:76122779 original size:30 final size:30
Alignment explanation
Indices: 76122743--76122887 Score: 245
Period size: 30 Copynumber: 4.8 Consensus size: 30
76122733 TAGGTACAAG
* *
76122743 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
76122773 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
76122803 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
76122833 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
76122863 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
76122888 TGAGAAAAGT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 107 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:76122836 original size:60 final size:60
Alignment explanation
Indices: 76122743--76122887 Score: 272
Period size: 60 Copynumber: 2.4 Consensus size: 60
76122733 TAGGTACAAG
*
76122743 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
76122803 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
76122863 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
76122888 TGAGAAAAGT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 83 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:76123665 original size:14 final size:14
Alignment explanation
Indices: 76123631--76123679 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
76123621 TGAGTTGATT
*
76123631 TTGAAAAATA-AAA
1 TTGAAAAACAGAAA
76123644 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
76123659 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
76123673 TT-AAAAA
1 TTGAAAAA
76123680 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 7 0.23
14 18 0.58
15 6 0.19
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:76123866 original size:75 final size:73
Alignment explanation
Indices: 76123701--76124158 Score: 523
Period size: 75 Copynumber: 6.5 Consensus size: 73
76123691 GTGAGCGAGA
* * *
76123701 CTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACGAAAATTGAAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAG-AAATTGAAAA-TACCTCAGCG
76123765 TGTCC-GAGG
64 TGTCCTGAGG
* *
76123774 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAAAGAAATTTAAAATACCTCAGCGA
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAAGAAATTGAAAATACCTCAGCG-
76123839 TGTCCTGAGG
64 TGTCCTGAGG
* * * *
76123849 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAATTGAAAAGACCTCAGCAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAAAAGAAATTGAAAATACCTCAGC--
*
76123914 GTGAGCC-GA-G
63 GTG-TCCTGAGG
* *
76123924 CTCAACTCACCTCTCGCAATATGAGTT-A-------ACAAACAGAAATTGAAATTACCTCAG-GT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAAAAGAAATTGAAAATACCTCAGCGT
*
76123980 GTCCCGAGG
65 GTCCTGAGG
*
76123989 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAA-AAATTAAAAATACCTCAGCGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAGAAATTGAAAATACCTCAGCGTG
76124052 TCCTGAGG
66 TCCTGAGG
*
76124060 CTCAA---ACCTCTCGCAATATGA-TTGATTTTTTGAAAAATAGAAATTGAAAA-ACCTCAGCAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA-AGAAATTGAAAATACCTCAGCGT
76124120 G---TGA-G
65 GTCCTGAGG
76124125 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
76124159 NNNNNNNNNN
Statistics
Matches: 338, Mismatches: 22, Indels: 54
0.82 0.05 0.13
Matches are distributed among these distances:
63 2 0.01
64 5 0.01
65 34 0.10
66 4 0.01
67 27 0.08
68 43 0.13
69 20 0.06
70 25 0.07
71 19 0.06
72 1 0.00
73 36 0.11
74 23 0.07
75 92 0.27
76 4 0.01
77 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (73 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAGAAATTGAAAATACCTCAGCGTG
TCCTGAGG
Found at i:76124102 original size:140 final size:140
Alignment explanation
Indices: 76123696--76124158 Score: 499
Period size: 140 Copynumber: 3.3 Consensus size: 140
76123686 AGCATGTGAG
* * * *
76123696 CGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACGAAAATTGAAAATTACCTC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-AAAAATT-AAAAATACCTC
* *
76123761 AGCGTGTCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAAAGAAATTTAA
64 AGCGTGTCCGAGGCTCAA--CACCTCTCGCAATATGA-TTGA-TTTTTTGAAAAAAGAAA-TTGA
76123826 AATACCTCAGCGATGTCC
124 AATACCTCAGCG-TGTCC
* * * * * *
76123844 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAATTGAAAAGACCTC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAC-AAAAAAAATTAAAAATACCTC
*
76123909 AGCATGTGAGCCGA-GCTCAACTCACCTCTCGCAATATGA--G-----TT-AACAAACAGAAATT
64 AGC--GTG-TCCGAGGCTCAA--CACCTCTCGCAATATGATTGATTTTTTGAA-AAA-AGAAATT
76123965 GAAATTACCTCAG-GTGTCC
122 GAAA-TACCTCAGCGTGTCC
76123984 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAAAAAATTAAAAATACCTCAG
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAAAAAATTAAAAATACCTCAG
*
76124048 CGTGTCCTGAGGCTCAA-ACCTCTCGCAATATGATTGATTTTTTGAAAAATAGAAATTGAAAAAC
66 CGTGTCC-GAGGCTCAACACCTCTCGCAATATGATTGATTTTTTGAAAAA-AGAAATTGAAATAC
*
76124112 CTCAGCATGT--
129 CTCAGCGTGTCC
76124122 -GA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
76124159 NNNNNNNNNN
Statistics
Matches: 273, Mismatches: 23, Indels: 50
0.79 0.07 0.14
Matches are distributed among these distances:
133 16 0.06
134 2 0.01
135 6 0.02
136 41 0.15
137 22 0.08
139 13 0.05
140 59 0.22
141 13 0.05
142 13 0.05
147 1 0.00
148 42 0.15
149 12 0.04
150 29 0.11
151 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (140 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAAAAAATTAAAAATACCTCAG
CGTGTCCGAGGCTCAACACCTCTCGCAATATGATTGATTTTTTGAAAAAAGAAATTGAAATACCT
CAGCGTGTCC
Found at i:76124677 original size:19 final size:19
Alignment explanation
Indices: 76124653--76124698 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
76124643 CTCTCTTTCT
76124653 TTTGCATT-CATCCCATACA
1 TTTGCATTGCATCCCAT-CA
**
76124672 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCCCATCA
76124691 TTTGCATT
1 TTTGCATT
76124699 AAATTTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCCCATCA
Found at i:76127120 original size:21 final size:22
Alignment explanation
Indices: 76127083--76127125 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
76127073 ACAAAAGTAC
76127083 AAAAATAGAAAAAAGAA-AAGG
1 AAAAATAGAAAAAAGAACAAGG
*
76127104 AAAAATA-AACAACAGAACAAGG
1 AAAAATAGAA-AAAAGAACAAGG
76127126 GTCATAGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.11
21 13 0.68
22 4 0.21
ACGTcount: A:0.72, C:0.07, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAATAGAAAAAAGAACAAGG
Found at i:76127663 original size:8 final size:8
Alignment explanation
Indices: 76127650--76127727 Score: 60
Period size: 8 Copynumber: 10.4 Consensus size: 8
76127640 CTTGAGACCT
76127650 TAAAAAAA
1 TAAAAAAA
*
76127658 -ATAAAAA
1 TAAAAAAA
76127665 T-AAAAAA
1 TAAAAAAA
* *
76127672 -ACAGAAA
1 TAAAAAAA
76127679 TAAAAAAA
1 TAAAAAAA
76127687 T--AAAAA
1 TAAAAAAA
**
76127693 TTTAAAAA
1 TAAAAAAA
76127701 TAAAAATAA
1 TAAAAA-AA
76127710 -AAAAAAA
1 TAAAAAAA
76127717 TAAAAAAA
1 TAAAAAAA
76127725 TAA
1 TAA
76127728 GAAAGAAAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
6 6 0.11
7 17 0.31
8 30 0.55
9 2 0.04
ACGTcount: A:0.82, C:0.01, G:0.01, T:0.15
Consensus pattern (8 bp):
TAAAAAAA
Found at i:76127665 original size:6 final size:6
Alignment explanation
Indices: 76127654--76127722 Score: 61
Period size: 6 Copynumber: 10.8 Consensus size: 6
76127644 AGACCTTAAA
*
76127654 AAAAAT AAAAAT AAAAAA ACAGAAAT AAAAAAAT AAAAATTT AAAAAT
1 AAAAAT AAAAAT AAAAAT A-A-AAAT --AAAAAT AAAAA--T AAAAAT
76127702 AAAAAT -AAAA- AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAA
76127723 AATAAGAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
5 8 0.15
6 29 0.55
7 1 0.02
8 13 0.25
9 1 0.02
10 1 0.02
ACGTcount: A:0.83, C:0.01, G:0.01, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:76127671 original size:14 final size:14
Alignment explanation
Indices: 76127652--76127714 Score: 90
Period size: 14 Copynumber: 4.5 Consensus size: 14
76127642 TGAGACCTTA
76127652 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
* *
76127666 AAAAAAACAGAAAT
1 AAAAAAATAAAAAT
76127680 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
**
76127694 TTAAAAATAAAAAT
1 AAAAAAATAAAAAT
76127708 AAAAAAA
1 AAAAAAA
76127715 AATAAAAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 41 1.00
ACGTcount: A:0.83, C:0.02, G:0.02, T:0.14
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:76128879 original size:64 final size:66
Alignment explanation
Indices: 76128801--76128985 Score: 257
Period size: 64 Copynumber: 2.8 Consensus size: 66
76128791 TCATTCATAA
* * *
76128801 CACATCTAGTTAGGAGAATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCA-GC-A
1 CACATCTAGTTAGGAGCATTCGATTCATTTCGATCATAGCATCCTAATTATTTGACATCACACAA
76128864 T
66 T
* *
76128865 CACATCTAGTTAGGAGCATTCGATTCATTTTGATCGTAGCATCCTAATTATTTGACATCACACAT
1 CACATCTAGTTAGGAGCATTCGATTCATTTCGATCATAGCATCCTAATTATTTGACATCACACA-
76128930 AT
65 AT
* * * * *
76128932 CTCATTTAGTTAGGAGCGTTGGATTCATTTCAATCATAGCATCCTAATTATTTG
1 CACATCTAGTTAGGAGCATTCGATTCATTTCGATCATAGCATCCTAATTATTTG
76128986 GCACAAACAC
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
64 56 0.53
65 1 0.01
67 49 0.46
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (66 bp):
CACATCTAGTTAGGAGCATTCGATTCATTTCGATCATAGCATCCTAATTATTTGACATCACACAA
T
Found at i:76129422 original size:44 final size:45
Alignment explanation
Indices: 76129350--76129452 Score: 124
Period size: 44 Copynumber: 2.3 Consensus size: 45
76129340 AGCCCCAAGC
**
76129350 CTTATC-TCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA-TGATAG-T
1 CTTATCTTC-CTAAGGTAGCAAGAGAGCAGACTGAAGATTGA-AGAT
76129394 CTTATCTTCCTAAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCCTAAGGTAGCAAGAG-AGCAGACTGAAGATTGAAGAT
*
76129439 ATTATCTTCCTAAG
1 CTTATCTTCCTAAG
76129453 CAGTAGTGGA
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
43 1 0.02
44 32 0.62
45 19 0.37
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (45 bp):
CTTATCTTCCTAAGGTAGCAAGAGAGCAGACTGAAGATTGAAGAT
Found at i:76129423 original size:147 final size:147
Alignment explanation
Indices: 76129156--76129439 Score: 378
Period size: 147 Copynumber: 1.9 Consensus size: 147
76129146 ACAGATGGTG
* * *
76129156 AATCTTATCTCCATGTATCGGCAATGGAGCGGATTTAAGCCACGAGCCTTATCTTCCTGAGGTTG
1 AATCTTATCTCCATGTATCGGCAATGGAGCGGATTTAAGCCACAAGCCTTATCTTCCTAAGGTAG
* * * * *
76129221 CAGTGGGGCAGGCTCAATATACAGGTCTTATCTCCCTAAGGTTGCAGTGGAGCAGACTGAAGATT
66 CAGTAGAGCAGGCTCAAGATACAGGTCTTATCTCCCTAAGGTAGCAGTGAAGCAGACTGAAGATT
76129286 GAAGATAGGAAGAGGCA
131 GAAGATAGGAAGAGGCA
* *
76129303 AATCTTATCTCCATGTATCGGTAATGGAGCGGATTTAAGCCCCAAGCCTTATC-TCTCTAAGGTA
1 AATCTTATCTCCATGTATCGGCAATGGAGCGGATTTAAGCCACAAGCCTTATCTTC-CTAAGGTA
* * * *
76129367 GCAAG-AGAGCAGGTTGAAGATGATA-GTCTTATCTTCCTAAGGTAGCAAG-GAAGCAGACTGAA
65 GC-AGTAGAGCAGGCTCAAGAT-ACAGGTCTTATCTCCCTAAGGTAGC-AGTGAAGCAGACTGAA
76129429 GATTGAAGATA
127 GATTGAAGATA
76129440 TTATCTTCCT
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
146 2 0.02
147 111 0.93
148 6 0.05
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (147 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCGGATTTAAGCCACAAGCCTTATCTTCCTAAGGTAG
CAGTAGAGCAGGCTCAAGATACAGGTCTTATCTCCCTAAGGTAGCAGTGAAGCAGACTGAAGATT
GAAGATAGGAAGAGGCA
Found at i:76129610 original size:177 final size:177
Alignment explanation
Indices: 76129349--76129683 Score: 489
Period size: 177 Copynumber: 1.9 Consensus size: 177
76129339 AAGCCCCAAG
76129349 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCA
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCA
* * * *
76129414 AGGAAGCAGACTGAAGATTGAAGATATTATCTTC-CTAAGCAGT-AGTGGAGCAGATCG-AGGAT
66 AGGAAGCAGACTAAAGATTGAAGATATTAT-TTCTCTAAACA-TAAGCGGAGCAGATCGAAAGA-
76129476 GGCGAATATTATCTCCATGTATCGGCAATGGGGTTGATTTTAGCTATTGA
128 GGCGAATATTATCTCCATGTATCGGCAATGGGGTTGATTTTAGCTATTGA
* ** *
76129526 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGACTG-TAGTCTTATCTTCCTGAGGTAGC
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA-TGATAGTCTTATCTTCCTAAGGTAGC
* * * *
76129590 AAGGAAGCAGACTAAAGATTGAAGATCTTATTTCTCTAAATATAAGCGGAGTAGATTGAAAGAGG
65 AAGGAAGCAGACTAAAGATTGAAGATATTATTTCTCTAAACATAAGCGGAGCAGATCGAAAGAGG
*
76129655 CGAATCTTATCTCCATGTATCGGCAATGG
130 CGAATATTATCTCCATGTATCGGCAATGG
76129684 AGCAGATTTA
Statistics
Matches: 141, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
176 4 0.03
177 132 0.94
178 5 0.04
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (177 bp):
CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCA
AGGAAGCAGACTAAAGATTGAAGATATTATTTCTCTAAACATAAGCGGAGCAGATCGAAAGAGGC
GAATATTATCTCCATGTATCGGCAATGGGGTTGATTTTAGCTATTGA
Found at i:76129754 original size:177 final size:175
Alignment explanation
Indices: 76129294--76129707 Score: 478
Period size: 177 Copynumber: 2.3 Consensus size: 175
76129284 TTGAAGATAG
* * * * *
76129294 GAAGAGGCAAATCTTATCTCCATGTATCGGTAATGGAGCGGATTTAAGCCCCAAGCCTTATCTCT
1 GAAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG-CCCTAGACTTATCTCT
* *
76129359 CT-AAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAG
65 CTGAA-GTAGCAAGAGAGCAGGTTGTAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAG
* * *
76129423 ACTGAAGATTGAAGATATTATCTTCCTAAGCAGTAGTGGAGCAGATC
129 ACTAAAGATTGAAGATATTATCTTCCTAAACAGTAGCGGAGCAGATC
* * * ** * ** *
76129470 GAGGATGGCGAATATTATCTCCATGTATCGGCAATGGGGTTGATTTTAGCTATTGACCTTATCTC
1 GAAGA-GGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCTAGA-CTTATCTC
* *
76129535 TCTGAGGTAGCAAGAGAGCAGGTTGGT-GACT-GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGC
64 TCTGAAGTAGCAAGAGAGCAGGTT-GTAGA-TGGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGC
* * * *
76129598 AGACTAAAGATTGAAGATCTTAT-TTCTCTAAATA-TAAGCGGAGTAGATT
127 AGACTAAAGATTGAAGATATTATCTTC-CTAAACAGT-AGCGGAGCAGATC
*
76129647 GAAAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCTAGATTTAT
1 G-AAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCTAGACTTAT
76129708 TTTCTTGAAG
Statistics
Matches: 196, Mismatches: 34, Indels: 16
0.80 0.14 0.07
Matches are distributed among these distances:
176 14 0.07
177 176 0.90
178 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (175 bp):
GAAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCTAGACTTATCTCTC
TGAAGTAGCAAGAGAGCAGGTTGTAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGAC
TAAAGATTGAAGATATTATCTTCCTAAACAGTAGCGGAGCAGATC
Found at i:76130017 original size:264 final size:265
Alignment explanation
Indices: 76129526--76130018 Score: 554
Period size: 264 Copynumber: 1.9 Consensus size: 265
76129516 TAGCTATTGA
* * * * *
76129526 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGACTGTAGTCTTATCTTCCTGAGGTAGCA
1 CCTTATCTCTATGAGGTAACAAGAGAGCAGGCTGATGACTGTAGTCTTATCTTCCTAAGGTAGCA
* * * * * *
76129591 AGGAAGCAGACTAAAGATTGAAGATCTTATTTCTCTAAATATAAGCGGAGTAGATTGAAAGAGGC
66 AGAAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAACATAAGCGGAGCAGATCGAAAGAGGC
* * * * *
76129656 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCTAGATTTATTTTCTTGAAGTTG
131 GAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAAGCACTAGACTTATTCTCTTGAAGTAG
* *
76129721 AAGCAGAACAAATTGTAGATGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACC
196 AAGCAGAACAAATTGAAGATGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACC
76129786 ATCAG
261 ATCAG
* * *
76129791 CCTTATCTCTATGTA-GTAACAAGAGAGCATGCTGATGATTG-AGTCTTATCTTTCTAAGGTAGC
1 CCTTATCTCTATG-AGGTAACAAGAGAGCAGGCTGATGACTGTAGTCTTATCTTCCTAAGGTAGC
* * * * *
76129854 AAGAAAGTAGACTGAAGATTTAAGATCTTATCTCCCTAGACAGT-AGTGGAGCAGATCG-AAGAT
65 AAGAAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAACA-TAAGCGGAGCAGATCGAAAGA-
* * *
76129917 GGTGAATTTTATCTCCATGTATCGGCAATAGAGTAGA-TTATAGTCACT-GACCTTA-TCTCTCT
128 GGCGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTA-AG-CACTAGA-CTTATTCTCT-T
* * * *
76129979 GAGGTAGCAAG-AGAGCAAGTTGAAGATGAT-AGTCTTATCT
189 GAAGTAG-AAGCAGAACAAATTGAAGATGATGAATCTTATCT
76130019 TCCTGAGGTA
Statistics
Matches: 187, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
263 7 0.04
264 115 0.61
265 61 0.33
266 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (265 bp):
CCTTATCTCTATGAGGTAACAAGAGAGCAGGCTGATGACTGTAGTCTTATCTTCCTAAGGTAGCA
AGAAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAACATAAGCGGAGCAGATCGAAAGAGGC
GAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAAGCACTAGACTTATTCTCTTGAAGTAG
AAGCAGAACAAATTGAAGATGATGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACC
ATCAG
Found at i:76130049 original size:44 final size:46
Alignment explanation
Indices: 76129968--76130063 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 46
76129958 AGTCACTGAC
* * *
76129968 CTTATC-TCTCTGAGGTAGCAAGAGAGCAAGTTGAAGATGATAG-T
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAAGCTAAAGATGAAAGAT
*
76130012 CTTATCTTC-CTGAGGTAGCAAG-GAAGC-AGACTAAAGATTAAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAAG-CTAAAGATGAAAGAT
76130057 CTTATCT
1 CTTATCT
76130064 CCCAAAGCAG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
43 3 0.07
44 31 0.70
45 10 0.23
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAAGCTAAAGATGAAAGAT
Found at i:76130091 original size:177 final size:177
Alignment explanation
Indices: 76129737--76130495 Score: 786
Period size: 177 Copynumber: 4.3 Consensus size: 177
76129727 AACAAATTGT
* * **
76129737 AGATGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAAC-CATCAGCCTTATCTCT
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAGTCAC-TCAGCCTTATCTCT
* * * * * * * *
76129801 ATGTA-GTAACAAGAGAGCATGCTGATGAT--TGAGTCTTATCTTTCTAAGGTAGCAAGAAAGTA
65 CTG-AGGTAGCAAGAGAGCAGGTTGAAGATGAT-AGTCTTATCTTCCTAAGGTAGCAAGGAAGCA
* * * **
76129863 GACTGAAGATTTAAGATCTTATCTCCC-TAGACAGTAGTGGAGCAGATCGA
128 GACTAAAGATTGAAGATCTTATCTCCCAAAG-CAGTAGCAGAGCAGATCGA
* * *
76129913 AGATGGTGAATTTTATCTCCATGTATCGGCAATAGAGTAGATTATAGTCACTGA-CCTTATCTCT
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATT-TAGTCACTCAGCCTTATCTCT
* *
76129977 CTGAGGTAGCAAGAGAGCAAGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
65 CTGAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGA
* *
76130042 CTAAAGATTAAAGATCTTATCTCCCAAAGCAGTAGCAGAACAGATCGA
130 CTAAAGATTGAAGATCTTATCTCCCAAAGCAGTAGCAGAGCAGATCGA
* * *
76130090 AGATTGTGAATCTTATCTCCATGTATCGGCAATATAGCAGATTTAATCCAC-CAGCCTTATCTCT
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAGT-CACTCAGCCTTATCTCT
* * * ** * * *
76130154 CTGAGGTAGTAGGAGAGCCGGTTGGTGATTATTGTCTTATCTTCCTAAGGTAGCACGGAAGCAGA
65 CTGAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAG-
*** *
76130219 AC-AAAGATTGAAGATCTTATCTCCCAAAGCAGTAATGGAGCAGATCAAA
129 ACTAAAGATTGAAGATCTTATCTCCCAAAGCAGTAGCAGAGCAGATC-GA
* * * * * *
76130268 AGATGGCGAATCTTATATCCATGTATCAGCAATGGAGCAGATTTTAG-CTACT-GGCCTTATTTC
1 AGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGA-TTTAGTC-ACTCAGCCTTATCTC
* * * * *
76130331 TTTGAGGTAGCAAGAGAGTAGGTTAAAGATGATAGTCTTATCTTCCTAAAGTAGCAAGGAAGCAA
64 TCTGAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAG
** * ** * *
76130396 ACCGAAGATTGAAGATC-TATTTCCCTAAAATAGTTGCAGAGCAGATTGA
129 ACTAAAGATTGAAGATCTTATCTCCC-AAAGCAGTAGCAGAGCAGATCGA
* *
76130445 GGACGGTGAATCTTATCTCCATGTAAT-GGCAATAGAGCAGATTTAAGTCAC
1 AGATGGTGAATCTTATCTCCATGT-ATCGGCAATAGAGCAGATTT-AGTCAC
76130496 CAGTCCTATT
Statistics
Matches: 483, Mismatches: 82, Indels: 35
0.81 0.14 0.06
Matches are distributed among these distances:
175 1 0.00
176 78 0.16
177 265 0.55
178 135 0.28
179 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (177 bp):
AGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAGTCACTCAGCCTTATCTCTC
TGAGGTAGCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGAC
TAAAGATTGAAGATCTTATCTCCCAAAGCAGTAGCAGAGCAGATCGA
Found at i:76130131 original size:441 final size:441
Alignment explanation
Indices: 76129303--76130135 Score: 1153
Period size: 441 Copynumber: 1.9 Consensus size: 441
76129293 GGAAGAGGCA
* * * * * *
76129303 AATCTTATCTCCATGTATCGGTAATGGAGCGGATTTAAGCCCCAAGCCTTATCTCTCTAAGGTAG
1 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACCCCAAGCCTTATCTCTATAAGGTAA
* *
76129368 CAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGCTGAAGATGA-AGTCTTATCTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATT
* *
76129433 GAAGATATTATCTTCCTAAGCAGTAGTGGAGCAGATCGAGGATGGCGAATATTATCTCCATGTAT
130 GAAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATATTATCTCCATGTAT
* * * * * * **
76129498 CGGCAATGGGGTTGATTTTAGCTATTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTG
195 CGGCAATAGAGTAGATTATAGCTACTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAG
* * *
76129563 ACTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATTTCTCTA
260 ACTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTAAAGATCTTATCTCTCCA
* * ** * *
76129628 AATATAAGCGGAGTAGATTGAAAGAGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
325 AACATAAGCAGAACAGATCGAAAGAGGCGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTT
76129693 AAGCCCTAGATTTATTTTCTTGAAGTTGAAGCAGAACAAATTGTAGATGGTG
390 AAGCCCTAGATTTATTTTCTTGAAGTTGAAGCAGAACAAATTGTAGATGGTG
* *
76129745 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACCATC-AGCCTTATCTCTATGTA-GT
1 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACC-CCAAGCCTTATCTCTAT-AAGGT
* * * *
76129808 AACAAGAGAGCATGCTGATGATTG-AGTCTTATCTTTCTAAGGTAGCAAGAAAGTAGACTGAAGA
64 AACAAGAGAGCAGGCTGAAGA-TGAAGTCTTATCTTCCTAAGGTAGCAAGAAAGCAGACTGAAGA
* * * *
76129872 TTTAAGATCTTATCTCCCT-AGACAGTAGTGGAGCAGATCGAAGATGGTGAATTTTATCTCCATG
128 TTGAAGATATTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGATGGCGAATATTATCTCCATG
76129936 TATCGGCAATAGAGTAGATTATAG-TCACTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTT
192 TATCGGCAATAGAGTAGATTATAGCT-ACTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTT
76130000 GAAGA-TGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTAAAGATCTTATCT
256 GAAGACTG-TAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTAAAGATCTTATCT
* * *
76130064 C-CCAAAGCAGT-AGCAGAACAGATCG-AAGATTGTGAATCTTATCTCCATGTATCGGCAATATA
320 CTCCAAA-CA-TAAGCAGAACAGATCGAAAGA-GGCGAATCTTATCTCCATGTATCGGCAATAGA
76130126 GCAGATTTAA
382 GCAGATTTAA
76130136 TCCACCAGCC
Statistics
Matches: 342, Mismatches: 40, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
440 13 0.04
441 255 0.75
442 70 0.20
443 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (441 bp):
AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACCCCAAGCCTTATCTCTATAAGGTAA
CAAGAGAGCAGGCTGAAGATGAAGTCTTATCTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTG
AAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATATTATCTCCATGTATC
GGCAATAGAGTAGATTATAGCTACTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAAGTTGAAGA
CTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTAAAGATCTTATCTCTCCAA
ACATAAGCAGAACAGATCGAAAGAGGCGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTA
AGCCCTAGATTTATTTTCTTGAAGTTGAAGCAGAACAAATTGTAGATGGTG
Found at i:76130377 original size:355 final size:353
Alignment explanation
Indices: 76129722--76130498 Score: 940
Period size: 355 Copynumber: 2.2 Consensus size: 353
76129712 TTGAAGTTGA
* * * * *
76129722 AGCAGAACAAATTGTAGATGGTGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAACCA
1 AGCAGAACAGATTGAAGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAATCCA
* * *
76129787 TCAGCCTTATCTCTATGTAGTAACAAGAGAGCATGCTGATGATTGAGTCTTATCTTTCTAAGGTA
66 CCAGCCTTATCTCTATGTAGTAACAAGAGAGCAGGCTGATGATTGAGTCTTATCTTCCTAAGGTA
* * * * * *
76129852 GCAAGAAAGTAGACTGAAGATTTAAGATCTTATCTCCCTAGACAGTAGTGGAGCAGATCGAAGAT
131 GCAAGAAAGCAGACTAAAGATTGAAGATCTTATCTCCCAAGACAGTAATGGAGCAGATCAAAGAT
* * * * *
76129917 GGTGAATTTTATCTCCATGTATCGGCAATAGAGTAGATTATAGTCACTGACCTTATCTCTCTGAG
196 GGCGAATCTTATATCCATGTATCAGCAATAGAGCAGATTATAGTCACTGACCTTATCTCTCTGAG
* * * * *
76129982 GTAGCAAGAGAGCAAGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAA
261 GTAGCAAGAGAGCAAGTTAAAGATGATAGTCTTATCTTCCTAAAGTAGCAAGGAAGCAAACCAAA
*
76130047 GATTAAAGATCTTATCTCCC-AAAGCAGT
326 GATTAAAGATC-TATCTCCCTAAAACAGT
* * *
76130075 AGCAGAACAGATCGAAGATTGTGAATCTTATCTCCATGTATCGGCAATATAGCAGATTTAATCCA
1 AGCAGAACAGATTGAAGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAATCCA
* ** * * * *
76130140 CCAGCCTTATCTCTCTG-AGGTAGTAGGAGAGCCGGTTGGTGATT-ATTGTCTTATCTTCCTAAG
66 CCAGCCTTATCTCTATGTA-GTAACAAGAGAGCAGGCTGATGATTGA--GTCTTATCTTCCTAAG
* *
76130203 GTAGCACGGAAGCAGAAC-AAAGATTGAAGATCTTATCTCCCAA-AGCAGTAATGGAGCAGATCA
128 GTAGCAAGAAAGCAG-ACTAAAGATTGAAGATCTTATCTCCCAAGA-CAGTAATGGAGCAGATC-
* * * *
76130266 AAAGATGGCGAATCTTATATCCATGTATCAGCAATGGAGCAGATTTTAG-CTACTGGCCTTATTT
190 AAAGATGGCGAATCTTATATCCATGTATCAGCAATAGAGCAGATTATAGTC-ACTGACCTTATCT
* * *
76130330 CTTTGAGGTAGCAAGAGAGTAGGTTAAAGATGATAGTCTTATCTTCCTAAAGTAGCAAGGAAGCA
254 CTCTGAGGTAGCAAGAGAGCAAGTTAAAGATGATAGTCTTATCTTCCTAAAGTAGCAAGGAAGCA
* * * *
76130395 AACCGAAGATTGAAGATCTATTTCCCTAAAATAGT
319 AACCAAAGATTAAAGATCTATCTCCCTAAAACAGT
* * * *
76130430 TGCAGAGCAGATTGAGGACGGTGAATCTTATCTCCATGTAAT-GGCAATAGAGCAGATTTAAGT-
1 AGCAGAACAGATTGAAGATGGTGAATCTTATCTCCATGT-ATCGGCAATAGAGCAGATTTAA-TC
76130493 CACCAG
64 CACCAG
76130499 TCCTATTTTC
Statistics
Matches: 359, Mismatches: 55, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
352 2 0.01
353 91 0.25
354 73 0.20
355 190 0.53
356 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (353 bp):
AGCAGAACAGATTGAAGATGGTGAATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAATCCA
CCAGCCTTATCTCTATGTAGTAACAAGAGAGCAGGCTGATGATTGAGTCTTATCTTCCTAAGGTA
GCAAGAAAGCAGACTAAAGATTGAAGATCTTATCTCCCAAGACAGTAATGGAGCAGATCAAAGAT
GGCGAATCTTATATCCATGTATCAGCAATAGAGCAGATTATAGTCACTGACCTTATCTCTCTGAG
GTAGCAAGAGAGCAAGTTAAAGATGATAGTCTTATCTTCCTAAAGTAGCAAGGAAGCAAACCAAA
GATTAAAGATCTATCTCCCTAAAACAGT
Found at i:76130782 original size:17 final size:18
Alignment explanation
Indices: 76130749--76130783 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
76130739 ATAAAAATAT
*
76130749 ATAACCCAATTAGCCCAA
1 ATAACCCAATTACCCCAA
76130767 ATAACCC-ATTACCCCAA
1 ATAACCCAATTACCCCAA
76130784 GCCCAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.43, C:0.37, G:0.03, T:0.17
Consensus pattern (18 bp):
ATAACCCAATTACCCCAA
Found at i:76135089 original size:35 final size:36
Alignment explanation
Indices: 76135049--76135131 Score: 123
Period size: 35 Copynumber: 2.3 Consensus size: 36
76135039 ATACTCTTTG
*
76135049 TTTGGCGTGTTTCGGTTGGACTATCTCTTATGAGCA
1 TTTGGCGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
76135085 -TTGGCTTGTTTCGGTTGGACTAGCTCTTGTGAGCA
1 TTTGGCGTGTTTCGGTTGGACTAGCTCTTATGAGCA
*
76135120 TTTGGTGTGTTT
1 TTTGGCGTGTTT
76135132 TGGAGGGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
35 32 0.78
36 9 0.22
ACGTcount: A:0.11, C:0.14, G:0.30, T:0.45
Consensus pattern (36 bp):
TTTGGCGTGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:76147217 original size:30 final size:29
Alignment explanation
Indices: 76147183--76147268 Score: 79
Period size: 30 Copynumber: 2.9 Consensus size: 29
76147173 TAAATATAAA
76147183 TTATAAAATTCATAAAATTTTATTAGAAAT
1 TTATAAAATT-ATAAAATTTTATTAGAAAT
*
76147213 TTATAAATAATTATAAAA-GTTA-TAGAAAAT
1 TTAT-AA-AATTATAAAATTTTATTAG-AAAT
* *
76147243 TTTTAAATGTTAT-AAATTTTATTAGA
1 TTATAAA-ATTATAAAATTTTATTAGA
76147269 GGTATATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
28 4 0.09
29 13 0.28
30 17 0.37
31 8 0.17
32 4 0.09
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (29 bp):
TTATAAAATTATAAAATTTTATTAGAAAT
Found at i:76147473 original size:3 final size:3
Alignment explanation
Indices: 76147465--76147496 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
76147455 AGTTATAAAA
76147465 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
76147497 ATTGGTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:76147475 original size:27 final size:30
Alignment explanation
Indices: 76147405--76147476 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 30
76147395 TAAGTCCGAG
**
76147405 AAAATTATTAAAATTTAATAGAAGTTTATA
1 AAAATTATTATTATTTAATAGAAGTTTATA
**
76147435 AAATAAAATT-TTATTTAA-A-AAG-TTATA
1 AAA-ATTATTATTATTTAATAGAAGTTTATA
76147462 AAAATTATTATTATT
1 AAAATTATTATTATT
76147477 ATTATTATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
26 4 0.12
27 13 0.38
28 3 0.09
29 1 0.03
30 9 0.26
31 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (30 bp):
AAAATTATTATTATTTAATAGAAGTTTATA
Done.