Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 234 of 253
Found at i:76148440 original size:45 final size:45
Alignment explanation
Indices: 76148338--76148556 Score: 329
Period size: 45 Copynumber: 4.9 Consensus size: 45
76148328 CGAATTCATC
* * *
76148338 CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCT
*
76148380 CACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
76148425 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* *
76148470 CACAGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
* *
76148515 CACCGGCATCATAACCTGCTAGGCTCAAAGGCCCGAATAGTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
76148557 CCGTATGATA
Statistics
Matches: 166, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
42 10 0.06
43 17 0.10
44 5 0.03
45 133 0.80
46 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.21
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
Found at i:76150713 original size:14 final size:14
Alignment explanation
Indices: 76150694--76150724 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
76150684 ATAATATAAA
76150694 ATGATCCATAAAAT
1 ATGATCCATAAAAT
76150708 ATGATCCATAAAAT
1 ATGATCCATAAAAT
76150722 ATG
1 ATG
76150725 TACAAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (14 bp):
ATGATCCATAAAAT
Found at i:76154655 original size:33 final size:34
Alignment explanation
Indices: 76154601--76154688 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 34
76154591 TTATTCTAAA
**
76154601 TTTTTTTATAACATTT-A-AAATTTGTCTATA-C
1 TTTTTTTATAATTTTTAATAAATTTGTCTATAGC
* *
76154632 TTTTTTTATAATTTTTAATAAATTTTTCTATATGT
1 TTTTTTTATAATTTTTAATAAATTTGTCTATA-GC
76154667 TTTTTTTATAAATTTTGTAATA
1 TTTTTTTAT-AATTTT-TAATA
76154689 TTTTTTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 14 0.30
32 1 0.02
33 12 0.26
35 9 0.19
36 6 0.13
37 5 0.11
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (34 bp):
TTTTTTTATAATTTTTAATAAATTTGTCTATAGC
Found at i:76154689 original size:25 final size:24
Alignment explanation
Indices: 76154643--76154694 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
76154633 TTTTTTATAA
*
76154643 TTTTTAATAAATTTTTCTATATGTT
1 TTTTTAATAAATTTTTCAATAT-TT
*
76154668 TTTTTTATAAATTTTGT-AATATTT
1 TTTTTAATAAATTTT-TCAATATTT
76154692 TTT
1 TTT
76154695 AAAAAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 18 0.75
26 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTTTAATAAATTTTTCAATATTT
Found at i:76154731 original size:10 final size:10
Alignment explanation
Indices: 76154720--76154772 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
76154710 ATTTAAATAT
76154720 TTTTTTAT-A
1 TTTTTTATAA
76154729 -TTTTTATAA
1 TTTTTTATAA
*
76154738 TTATTTATAA
1 TTTTTTATAA
* *
76154748 TTTTCTATTA
1 TTTTTTATAA
76154758 TTTTTTATGAA
1 TTTTTTAT-AA
76154769 TTTT
1 TTTT
76154773 ATAATTTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
8 7 0.20
9 1 0.03
10 22 0.63
11 5 0.14
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:76154732 original size:8 final size:8
Alignment explanation
Indices: 76154721--76154803 Score: 51
Period size: 8 Copynumber: 9.6 Consensus size: 8
76154711 TTTAAATATT
76154721 TTTTTATA
1 TTTTTATA
76154729 TTTTTATAA
1 TTTTTAT-A
76154738 TTATTTATAA
1 TT-TTTAT-A
76154748 TTTTCTATTA
1 TTTT-TA-TA
76154758 TTTTTTATGA
1 -TTTTTAT-A
*
76154768 ATTTTATA
1 TTTTTATA
*
76154776 -ATTTATA
1 TTTTTATA
*
76154783 TTTTTAAA
1 TTTTTATA
* *
76154791 ATTATATA
1 TTTTTATA
76154799 TTTTT
1 TTTTT
76154804 TAGAATTTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.10
8 21 0.36
9 12 0.20
10 15 0.25
11 5 0.08
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (8 bp):
TTTTTATA
Found at i:76154744 original size:18 final size:18
Alignment explanation
Indices: 76154723--76154810 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 18
76154713 TAAATATTTT
76154723 TTTATATTTTTATAATTA
1 TTTATATTTTTATAATTA
* *
76154741 TTTATAATTTTCTATTATTT
1 TTTAT-ATTTT-TATAATTA
*
76154761 TTTATGAATTTTAT-A--A
1 TTTAT-ATTTTTATAATTA
*
76154777 TTTATATTTTTAAAATTA
1 TTTATATTTTTATAATTA
* *
76154795 TATAT-TTTTTAGAATT
1 TTTATATTTTTATAATT
76154811 TTAACATTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
15 6 0.11
16 6 0.11
17 10 0.18
18 11 0.20
19 8 0.14
20 15 0.27
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTATATTTTTATAATTA
Found at i:76154798 original size:16 final size:15
Alignment explanation
Indices: 76154769--76154803 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76154759 TTTTTATGAA
*
76154769 TTTTATAATTTATAT
1 TTTTAAAATTTATAT
76154784 TTTTAAAATTATATAT
1 TTTTAAAATT-TATAT
76154800 TTTT
1 TTTT
76154804 TAGAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTAAAATTTATAT
Found at i:76160570 original size:18 final size:17
Alignment explanation
Indices: 76160547--76160584 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
76160537 AATCGAAATT
76160547 TATTTTATAATAATATAA
1 TATTTTATAATAAT-TAA
*
76160565 TATTTTGTAATAATTAA
1 TATTTTATAATAATTAA
76160582 TAT
1 TAT
76160585 CATATATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TATTTTATAATAATTAA
Found at i:76172328 original size:19 final size:19
Alignment explanation
Indices: 76172304--76172375 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
76172294 CCAGTTCAAG
76172304 TTTTTATATTTTTTTATAA
1 TTTTTATATTTTTTTATAA
** *
76172323 TTTTTATAAATTTATATTAA
1 TTTTTATATTTTTTTA-TAA
** *
76172343 TTTCAATA-TTTTTTACAA
1 TTTTTATATTTTTTTATAA
76172361 TTTTTTATATTTTTT
1 -TTTTTATATTTTTT
76172376 AAACAATTCT
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
18 2 0.05
19 24 0.60
20 14 0.35
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTATATTTTTTTATAA
Found at i:76172444 original size:19 final size:18
Alignment explanation
Indices: 76172415--76172475 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 18
76172405 AATATTTTAA
*
76172415 ATAAGTTTTATTGTTTTT
1 ATAATTTTTATTGTTTTT
*
76172433 ATAATTTATTA-TATTTTT
1 ATAATTT-TTATTGTTTTT
* *
76172451 A-AATTTTTATAGTATTT
1 ATAATTTTTATTGTTTTT
76172468 AT-ATTTTT
1 ATAATTTTT
76172476 TTATAATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 3 0.09
17 16 0.46
18 13 0.37
19 3 0.09
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
ATAATTTTTATTGTTTTT
Found at i:76174563 original size:15 final size:14
Alignment explanation
Indices: 76174536--76174565 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
76174526 AACATTTTTT
76174536 TAATATTTATATTA
1 TAATATTTATATTA
76174550 TAATATTATATATTA
1 TAATATT-TATATTA
76174565 T
1 T
76174566 TATAGATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:76177269 original size:17 final size:17
Alignment explanation
Indices: 76177247--76177280 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
76177237 GTTGTAGGGG
76177247 GAAGCCGAGAACAGAGA
1 GAAGCCGAGAACAGAGA
76177264 GAAGCCGAGAACAGAGA
1 GAAGCCGAGAACAGAGA
76177281 CGGCGCCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.35, T:0.00
Consensus pattern (17 bp):
GAAGCCGAGAACAGAGA
Found at i:76179490 original size:17 final size:18
Alignment explanation
Indices: 76179457--76179503 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
76179447 TATTGTTTGT
76179457 GATAATTATATATTTAATA
1 GATAATTATA-ATTTAATA
76179476 -ATAATTATAATTTAATA
1 GATAATTATAATTTAATA
76179493 GA-AATTATAAT
1 GATAATTATAAT
76179504 AATTACATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (18 bp):
GATAATTATAATTTAATA
Found at i:76187802 original size:12 final size:13
Alignment explanation
Indices: 76187773--76187800 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
76187763 TTCATTGAAC
76187773 TTTCAGTTGTATT
1 TTTCAGTTGTATT
76187786 TTTCAGTTGTATT
1 TTTCAGTTGTATT
76187799 TT
1 TT
76187801 CATCACCCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64
Consensus pattern (13 bp):
TTTCAGTTGTATT
Found at i:76188437 original size:30 final size:30
Alignment explanation
Indices: 76188397--76188499 Score: 170
Period size: 30 Copynumber: 3.4 Consensus size: 30
76188387 TAACCACTCT
*
76188397 TTTTCTACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACACC
* *
76188427 TTTTCCACCACCAACTCCACTAGCCACTCT
1 TTTTCCACCACCAACTCCACTAGCCACACC
76188457 TTTTCCACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACACC
*
76188487 TTCTCCACCACCA
1 TTTTCCACCACCA
76188500 CTTGTACCTA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
TTTTCCACCACCAACTCCACTAGCCACACC
Found at i:76188458 original size:60 final size:60
Alignment explanation
Indices: 76188385--76188499 Score: 203
Period size: 60 Copynumber: 1.9 Consensus size: 60
76188375 ATTTTTCTCA
* *
76188385 ACTAACCACTCTTTTTCTACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAACCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
*
76188445 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAACCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
76188500 CTTGTACCTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (60 bp):
ACTAACCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:76188704 original size:16 final size:17
Alignment explanation
Indices: 76188685--76188716 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76188675 TATTGTGAAG
76188685 GCTAG-TTTTTGGAGAA
1 GCTAGTTTTTTGGAGAA
76188701 GCTAGTTTTTTGGAGA
1 GCTAGTTTTTTGGAGA
76188717 TTAATCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.22, C:0.06, G:0.31, T:0.41
Consensus pattern (17 bp):
GCTAGTTTTTTGGAGAA
Found at i:76189087 original size:32 final size:32
Alignment explanation
Indices: 76189051--76189114 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
76189041 ACGTATATAT
* *
76189051 ATATTTTA-TACTATTTTATGTATATATCTTTA
1 ATATTATATTACTA-TTTATATATATATCTTTA
* *
76189083 ATATTATATTATTATTTATATATATATTTTTA
1 ATATTATATTACTATTTATATATATATCTTTA
76189115 CATGTTATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (32 bp):
ATATTATATTACTATTTATATATATATCTTTA
Found at i:76189354 original size:8 final size:7
Alignment explanation
Indices: 76189327--76189370 Score: 52
Period size: 7 Copynumber: 5.9 Consensus size: 7
76189317 ATATTAATTA
76189327 TTATATCT
1 TTATAT-T
76189335 TCTATATT
1 T-TATATT
*
76189343 TGATATT
1 TTATATT
76189350 TTGATATT
1 TT-ATATT
76189358 TTATATT
1 TTATATT
76189365 TTATAT
1 TTATAT
76189371 ATTTTATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 17 0.53
8 10 0.31
9 5 0.16
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (7 bp):
TTATATT
Found at i:76189358 original size:15 final size:14
Alignment explanation
Indices: 76189337--76189370 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
76189327 TTATATCTTC
76189337 TATATTTGATATTT
1 TATATTTGATATTT
*
76189351 TGATATTTTATATTT
1 T-ATATTTGATATTT
76189366 TATAT
1 TATAT
76189371 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
TATATTTGATATTT
Found at i:76279909 original size:23 final size:22
Alignment explanation
Indices: 76279883--76279927 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 22
76279873 GAAGACAAAG
76279883 AAAGAAGCAGTGTTTCAAGTAAT
1 AAAGAAGCAGTGTTTCAA-TAAT
76279906 AAAGAAGCAGTGTTTCAATAAT
1 AAAGAAGCAGTGTTTCAATAAT
76279928 CTTTCTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (22 bp):
AAAGAAGCAGTGTTTCAATAAT
Found at i:76287949 original size:80 final size:82
Alignment explanation
Indices: 76287638--76287947 Score: 449
Period size: 80 Copynumber: 3.8 Consensus size: 82
76287628 GCAAATCAAC
*
76287638 TTGAATCTGTTTTGAGAACATCTGAGAGTCAAATCTGCTACGTCCTTGATTTGTTCTTTGTAAGC
1 TTGAGTCTG-TTTGAGAACATCTGAGAGTCAAATCTGCTACGTCCTTGATTTGTTCTTTGTAAGC
76287703 ACAAAGATGCCAAACCAT
65 ACAAAGATGCCAAACCAT
*
76287721 TTGAGTCTGTTTGAGAACATCTGAGAGTC-AATCTGCTACAT-CTTGATTTGTTCTTTGTAAGCA
1 TTGAGTCTGTTTGAGAACATCTGAGAGTCAAATCTGCTACGTCCTTGATTTGTTCTTTGTAAGCA
76287784 CAAAGATGCC-AACCAT
66 CAAAGATGCCAAACCAT
*
76287800 CTTGAGTCTATTTGA-AA-ATCTGAGAGTCCAAATCTGCTACGTCCTTGATTTGTTCTTTGTAAG
1 -TTGAGTCTGTTTGAGAACATCTGAGAGT-CAAATCTGCTACGTCCTTGATTTGTTCTTTGTAAG
76287863 CAC-AAGATGCCAAACCAT
64 CACAAAGATGCCAAACCAT
* * * *
76287881 TTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGC-ATGTCCTCT-A-TTGTTTCCTTGTAAG
1 TTGAGTCTGTTTGAGAACATCTGAGAGTCAAATCTGCTACGTCCT-TGATTTG-TTCTTTGTAAG
76287943 CACAA
64 CACAA
76287948 GAATACCAAA
Statistics
Matches: 208, Mismatches: 9, Indels: 22
0.87 0.04 0.09
Matches are distributed among these distances:
78 10 0.05
79 12 0.06
80 97 0.47
81 52 0.25
82 29 0.14
83 8 0.04
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (82 bp):
TTGAGTCTGTTTGAGAACATCTGAGAGTCAAATCTGCTACGTCCTTGATTTGTTCTTTGTAAGCA
CAAAGATGCCAAACCAT
Found at i:76288284 original size:119 final size:118
Alignment explanation
Indices: 76287890--76288463 Score: 878
Period size: 119 Copynumber: 5.0 Consensus size: 118
76287880 TTTGAGTCTG
* * * * *
76287890 TTTGAGAACATTTGAGAGTCATATCTGC-ATGTCCTCTA-TTGTTTCCTTGTAAGCACAAGAATA
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTG-TTCCTTGTAAACACAAGAATA
*
76287953 CCAAATCATCTTGGATCTG-TTCAGTATAATCATCTGAAGGTTAGATCTG--T-
65 CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTTA
*
76288003 TTTGAG-ACATCTGAGAGTCAAA-CTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATA-
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
76288065 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG-TTA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTTA
76288117 -TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
76288181 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCT-TA
76288235 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
76288300 CAAATCATCTTGGATCTGCTTCAGT-TAAACATCTGAAGG-TAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCT-TA
*
76288352 TTTGAGAACGTCTGAGAGTCAAA--T-CTATGTCCTCGACTTGTT-CTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* **
76288413 CAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAA-GTCTAGATCTGCT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGT-TAGATCTGCT
76288464 GTCTTCATTT
Statistics
Matches: 436, Mismatches: 11, Indels: 26
0.92 0.02 0.05
Matches are distributed among these distances:
111 22 0.05
112 72 0.17
113 59 0.14
114 42 0.10
115 51 0.12
116 49 0.11
117 36 0.08
118 16 0.04
119 89 0.20
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (118 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTTA
Found at i:76288451 original size:232 final size:226
Alignment explanation
Indices: 76287890--76288463 Score: 840
Period size: 232 Copynumber: 2.5 Consensus size: 226
76287880 TTTGAGTCTG
* * * * *
76287890 TTTGAGAACATTTGAGAGTCATATCTGCATGTCCTCTATTGTTTCCTTGTAAGCACAAGAATACC
1 TTTGAGAACGTCTGAGAGTCAAATCT--ATGTCCTCGATTG-TTCCTTGTAAACACAAGAATACC
76287955 AAATCATCTTGGATCTG-TTCAGTAT-AATCATCTGAAGGTTAGATCTG--TTTTGAGACATCTG
63 AAATCATCTTGGATCTGCTTCAGTATAAAT-ATCTGAAGGTTAGATCTGCTTTTTGAGACATCTG
76288016 AGAGTCAAACTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACAAATCATCTTGGATC
127 AGAGTCAAACTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACAAATCATCTTGGATC
76288081 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGTT
192 TGCTTCAGTATAAACATCTGAAGGTTAGATCTGTT
*
76288116 ATTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAA--T-CTATGTCCTCGA-TTGTTCCTTGTAAACACAAGAATAC
* *
76288181 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
62 CAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCT-T-TTTGAG-ACAT
76288246 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
124 CTGAGAGTCAAA-CTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATA-CAAATCATCTT
76288311 GGATCTGCTTCAGT-TAAACATCTGAAGG-TAGATCTGCTAT
187 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG-T-T
76288351 CTTTGAGAACGTCTGAGAGTCAAATCTATGTCCTCGACTTGTT-CTTGTAAACACAAGAATACCA
1 -TTTGAGAACGTCTGAGAGTCAAATCTATGTCCTCGA-TTGTTCCTTGTAAACACAAGAATACCA
* *
76288415 AATCATCTTGGATCTGCTTCAGCATAAATGTCTGAA-GTCTAGATCTGCT
64 AATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGT-TAGATCTGCT
76288464 GTCTTCATTT
Statistics
Matches: 318, Mismatches: 13, Indels: 28
0.89 0.04 0.08
Matches are distributed among these distances:
226 19 0.06
227 48 0.15
228 30 0.09
229 4 0.01
231 3 0.01
232 70 0.22
233 40 0.13
234 56 0.18
235 26 0.08
236 22 0.07
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (226 bp):
TTTGAGAACGTCTGAGAGTCAAATCTATGTCCTCGATTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTTTTTGAGACATCTGAGAG
TCAAACTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACAAATCATCTTGGATCTGCT
TCAGTATAAACATCTGAAGGTTAGATCTGTT
Found at i:76299867 original size:18 final size:18
Alignment explanation
Indices: 76299826--76299860 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
76299816 GTACTAGGTA
*
76299826 GATAAAAATGAATACTAC
1 GATAAAAATGAATAATAC
76299844 GATAAAAA-GAATAATAC
1 GATAAAAATGAATAATAC
76299861 ATATAAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (18 bp):
GATAAAAATGAATAATAC
Found at i:76300188 original size:7 final size:7
Alignment explanation
Indices: 76300176--76300201 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
76300166 AAATAGTATT
76300176 TAATATA
1 TAATATA
76300183 TAATATA
1 TAATATA
76300190 TAATATA
1 TAATATA
76300197 TAATA
1 TAATA
76300202 ACAAGAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAATATA
Found at i:76300291 original size:25 final size:24
Alignment explanation
Indices: 76300245--76300299 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
76300235 TATAATATTT
*
76300245 ATAAAAAATAATAAGTGGTATAAAA
1 ATAAAAAATAATAAATGGTAT-AAA
* * *
76300270 ATAAAACATAATAAATGTTATATA
1 ATAAAAAATAATAAATGGTATAAA
76300294 ATAAAA
1 ATAAAA
76300300 TACATAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (24 bp):
ATAAAAAATAATAAATGGTATAAA
Found at i:76300503 original size:16 final size:18
Alignment explanation
Indices: 76300466--76300505 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
76300456 TAATAATACA
76300466 TATAATAAAAATAACACT
1 TATAATAAAAATAACACT
*
76300484 TATAAT-AAAATAA-TCT
1 TATAATAAAAATAACACT
76300500 TATAAT
1 TATAAT
76300506 GTATAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 7 0.33
18 6 0.29
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (18 bp):
TATAATAAAAATAACACT
Found at i:76303702 original size:16 final size:15
Alignment explanation
Indices: 76303681--76303776 Score: 69
Period size: 16 Copynumber: 6.3 Consensus size: 15
76303671 ATTTTTACTT
76303681 TTATTATATATATTA
1 TTATTATATATATTA
76303696 CTTATTATAT-TATT-
1 -TTATTATATATATTA
*
76303710 TTTTTATTATATATTA
1 TTATTA-TATATATTA
76303726 TGTA-TATAATATATTA
1 T-TATTAT-ATATATTA
76303742 TTTATTATAT-TATTTA
1 -TTATTATATATA-TTA
76303758 TGT-TTATAT-TATTCA
1 T-TATTATATATATT-A
76303773 TTAT
1 TTAT
76303777 ATTTTTTATA
Statistics
Matches: 67, Mismatches: 2, Indels: 23
0.73 0.02 0.25
Matches are distributed among these distances:
13 5 0.07
14 6 0.09
15 23 0.34
16 28 0.42
17 5 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TTATTATATATATTA
Found at i:76303723 original size:30 final size:29
Alignment explanation
Indices: 76303648--76303770 Score: 90
Period size: 30 Copynumber: 4.0 Consensus size: 29
76303638 TTATATTGTA
**
76303648 TTTTATTATATAGCATTTATTATATT-TTT
1 TTTTATTATATATTA-TTATTATATTATTT
76303677 ACTTTTATTATATATATTACTTATTATATTATTT
1 --TTTTA-T-TATATATTA-TTATTATATTATTT
*
76303711 TTTTATTATATATTATGTA-TATAATATATT
1 TTTTATTATATATTAT-TATTATATTAT-TT
*
76303741 ATTTATTATATTATTTATGT-TTATATTATT
1 TTTTATTATA-TA-TTAT-TATTATATTATT
76303771 CATTATATTT
Statistics
Matches: 78, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
29 8 0.10
30 22 0.28
31 9 0.12
32 19 0.24
33 17 0.22
34 3 0.04
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTTATTATATATTATTATTATATTATTT
Found at i:76303776 original size:12 final size:12
Alignment explanation
Indices: 76303662--76303785 Score: 89
Period size: 12 Copynumber: 10.5 Consensus size: 12
76303652 ATTATATAGC
76303662 ATTTATTATATT
1 ATTTATTATATT
*
76303674 -TTTACT-T-TT
1 ATTTATTATATT
76303683 A-TTATATATATT
1 ATTTAT-TATATT
*
76303695 ACTTATTATATT
1 ATTTATTATATT
*
76303707 ATTT-TTTTATT
1 ATTTATTATATT
* *
76303718 ATATATTAT-GT
1 ATTTATTATATT
* *
76303729 ATATAATATATT
1 ATTTATTATATT
76303741 ATTTATTATATT
1 ATTTATTATATT
76303753 ATTTATGTTTATATT
1 ATTTA---TTATATT
*
76303768 ATTCATTATATT
1 ATTTATTATATT
*
76303780 TTTTAT
1 ATTTAT
76303786 AATTTTAAGA
Statistics
Matches: 88, Mismatches: 14, Indels: 20
0.72 0.11 0.16
Matches are distributed among these distances:
9 5 0.06
10 2 0.02
11 24 0.27
12 42 0.48
13 4 0.05
15 11 0.12
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (12 bp):
ATTTATTATATT
Found at i:76316400 original size:44 final size:45
Alignment explanation
Indices: 76316352--76316670 Score: 251
Period size: 44 Copynumber: 7.2 Consensus size: 45
76316342 TTAGTAGAGT
* *
76316352 AGATTAAAGTTA-TAAACCTTATCTCCTTGAAGTTGTC-GTGG-GAC
1 AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTG-CAGTGGAG-C
*
76316396 AGATTGAAGTTATTGTAGACCTTATCTCCCTGAAGTTGCAGTGGAGC
1 AGATTGAAGTTA-T-TAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * * *
76316443 AGATTGAAG---TTAGATCTTGTCTCCCTGAAGTTACAGGGGAGT
1 AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
* ** * ** * * * *
76316485 AGATCGGGGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGC
1 AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
76316530 AGATTAAAGCTA-TAAACCTTATCTCCCTGAAGTTGTAGTGGAGT
1 AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
* * **
76316574 AGATTGAAGTCA-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
1 AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * *
76316618 AGGTTGAAGTTA-TGAATCTCAACTCCCTGAAGTTGCAGTGGAGC
1 AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
76316662 AGATTGAAG
1 AGATTGAAG
76316671 CAACAATTCC
Statistics
Matches: 218, Mismatches: 49, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
42 33 0.15
43 1 0.00
44 117 0.54
45 30 0.14
46 1 0.00
47 35 0.16
48 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (45 bp):
AGATTGAAGTTATTAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
Found at i:76316549 original size:178 final size:175
Alignment explanation
Indices: 76316250--76316665 Score: 548
Period size: 178 Copynumber: 2.3 Consensus size: 175
76316240 CAACTTCCTA
* * *
76316250 AAGTTGC-GATGGAGCAGATTGAAGCTAGATCTTGTCTCCCTAAAGTTATAGGGGAGTAGATCGG
1 AAGTTGCAG-TGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTACAGGGGAGTAGATCGG
* ** * * *
76316314 GGATAACAAATCTTATCTCTTTAAAGTTTTAGTAGAGTAGATTAAAGTTATAAACCTTATCTCCT
65 GGATAACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCC
* * **
76316379 TGAAGTTGTCGTGG-GACAGATTGAAGTTATTGTAGACCTTATCTCCCTG
130 TGAAGTTGTAGTGGAG-CAGATTGAAGTCA--CAAG-CCTTATCTCCCTG
76316428 AAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTACAGGGGAGTAGATCGGG
1 AAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTACAGGGGAGTAGATCGGG
*
76316493 GATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
66 GATAACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
* *
76316558 GAAGTTGTAGTGGAGTAGATTGAAGTCACAAGTCTTATCTCCCTG
131 GAAGTTGTAGTGGAGCAGATTGAAGTCACAAGCCTTATCTCCCTG
* *** * * *
76316603 AAGTTGCAGTGGAGCAGGTTGAAGTTATGAATCTCAACTCCCTGAAGTTGCAGTGGAGCAGAT
1 AAGTTGCAGTGGAGCAGATTGAAGTTA-G-ATCTTGTCTCCCTGAAGTTACAGGGGAGTAGAT
76316666 TGAAGCAACA
Statistics
Matches: 211, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
175 38 0.18
176 3 0.01
177 27 0.13
178 141 0.67
179 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (175 bp):
AAGTTGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTGAAGTTACAGGGGAGTAGATCGGG
GATAACAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCT
GAAGTTGTAGTGGAGCAGATTGAAGTCACAAGCCTTATCTCCCTG
Found at i:76316618 original size:88 final size:89
Alignment explanation
Indices: 76316352--76316703 Score: 297
Period size: 88 Copynumber: 4.0 Consensus size: 89
76316342 TTAGTAGAGT
* * **
76316352 AGATTAAAGTTATAAACCTTATCTCCTTGAAGTTGTC-GTGG-GACAGATTGAAGTTATTGTAGA
1 AGATTAAAGTTATAAACCTTATCTCCCTGAAGTTG-CAGTGGAG-CAGATTGAAGTCA-TCAAG-
*
76316415 CCTTATCTCCCTGAAGTTGCAGTGGAGC
62 TCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * * * * * * ** * *
76316443 AGATTGAAG-T-TAGATCTTGTCTCCCTGAAGTTACAGGGGAGTAGATCGGGGAT-AGCAAATCT
1 AGATTAAAGTTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TCATCAAGTCT
* * *
76316505 TATCTCTCTAAAGTTGCAGTAGAGC
65 TATCTCCCTGAAGTTGCAGTGGAGC
* * *
76316530 AGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTCA-CAAGTCTT
1 AGATTAAAGTTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCATCAAGTCTT
76316594 ATCTCCCTGAAGTTGCAGTGGAGC
66 ATCTCCCTGAAGTTGCAGTGGAGC
* * * * * * * * *
76316618 AGGTTGAAGTTATGAATCTCAACTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CAACAATTCCT
1 AGATTAAAGTTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCATCAAGTCTT
*
76316682 ATACT-CCTGAAGTTGTAGTGGA
66 AT-CTCCCTGAAGTTGCAGTGGA
76316704 ATAGATTGAA
Statistics
Matches: 208, Mismatches: 45, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
87 34 0.16
88 100 0.48
89 63 0.30
90 3 0.01
91 8 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (89 bp):
AGATTAAAGTTATAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCATCAAGTCTT
ATCTCCCTGAAGTTGCAGTGGAGC
Found at i:76316691 original size:44 final size:44
Alignment explanation
Indices: 76316421--76316745 Score: 190
Period size: 44 Copynumber: 7.4 Consensus size: 44
76316411 TAGACCTTAT
** * * *
76316421 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-GATCTTGT-
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAATCCTATA
* * * * *
76316463 CTCCCTGAAGTTACAGGGGAGTAGATCGGGGATAGC-A-AATCTTAT-
1 CTCCCTGAAGTTGCAGTGGAGCAGAT---TGA-AGCAACAATCCTATA
* * * * * * *
76316508 CTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCT-TA
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAATCCTATA
* * *
76316551 TCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGTC-ACAAGTCTTAT-
1 -CTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CAACAA-TCCTATA
* * **
76316596 CTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTATGAAT-CTCA-A
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CAACAATCCT-ATA
76316640 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAATTCCTATA
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAA-TCCTATA
* ** *
76316685 CT-CCTGAAGTTGTAGTGGAATAGATTGAAGCGACAAAGT-CTATA
1 CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAAC-AA-TCCTATA
*
76316729 C-CTCTGAAGTTGCAGTG
1 CTCCCTGAAGTTGCAGTG
76316746 AGTTAGAACG
Statistics
Matches: 220, Mismatches: 44, Indels: 36
0.73 0.15 0.12
Matches are distributed among these distances:
41 3 0.01
42 26 0.12
43 8 0.04
44 138 0.63
45 42 0.19
46 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
CTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCAACAATCCTATA
Found at i:76326225 original size:55 final size:54
Alignment explanation
Indices: 76326138--76326371 Score: 243
Period size: 55 Copynumber: 4.4 Consensus size: 54
76326128 ATTAGGGTTT
* *
76326138 AAGGATACCATGTAAGACCATGCCAAGTCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAA-GTTTCATAAGGC
* * * * *
76326193 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTT-TCATAAGGC
* * * * *
76326248 AAAGG-TCCCATGTAAGACCATGGCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCATAAGGC
*
76326301 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAAGTTTCATAAGGC
76326350 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
76326372 AGAAGTCATG
Statistics
Matches: 152, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 22 0.14
52 6 0.04
53 41 0.27
54 13 0.09
55 66 0.43
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCATAAGGC
Found at i:76326344 original size:108 final size:110
Alignment explanation
Indices: 76326145--76326345 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
76326135 TTTAAGGATA
* *
76326145 CCATGTAAGACCATGCCAAGTCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
76326210 CCATGTCAAGACATGGCATTGATAAGTTACCATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
* * * *
76326255 CCATGTAAGACCATGGCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
76326317 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
76326346 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
Found at i:76326498 original size:23 final size:24
Alignment explanation
Indices: 76326461--76326505 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
76326451 AAGGTAAGGT
**
76326461 AAGGTAAGATGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
76326484 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
76326506 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:76331503 original size:14 final size:13
Alignment explanation
Indices: 76331474--76331515 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
76331464 AAAAATTATA
76331474 AAATTTGAATTAC
1 AAATTTGAATTAC
76331487 AAATTT-AATTAGCC
1 AAATTTGAATTA--C
*
76331501 AAATTTGAATCAC
1 AAATTTGAATTAC
76331514 AA
1 AA
76331516 GTTTTAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 5 0.20
13 9 0.36
14 7 0.28
15 4 0.16
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (13 bp):
AAATTTGAATTAC
Found at i:76333070 original size:21 final size:22
Alignment explanation
Indices: 76333045--76333093 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
76333035 GGTAAAAAGG
*
76333045 GGCACACAGCCC-TGTGGA-AGA
1 GGCACACA-CCCGTGTGAAGAGA
76333066 GGCACACACCCGTGTGAAGAGA
1 GGCACACACCCGTGTGAAGAGA
76333088 GGCACA
1 GGCACA
76333094 TGGCCGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 13 0.52
22 9 0.36
ACGTcount: A:0.31, C:0.29, G:0.33, T:0.08
Consensus pattern (22 bp):
GGCACACACCCGTGTGAAGAGA
Found at i:76333960 original size:22 final size:23
Alignment explanation
Indices: 76333935--76333990 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
76333925 TTCAACTTCT
76333935 AAAAAAAGAAAT-AAGAAGAACC
1 AAAAAAAGAAATAAAGAAGAACC
* *
76333957 AAAAAAA-AAATAAAGGAGACCC
1 AAAAAAAGAAATAAAGAAGAACC
76333979 AAAAGAAAGAAA
1 AAAA-AAAGAAA
76333991 GGAAAAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.14
22 19 0.66
23 3 0.10
24 3 0.10
ACGTcount: A:0.73, C:0.09, G:0.14, T:0.04
Consensus pattern (23 bp):
AAAAAAAGAAATAAAGAAGAACC
Found at i:76334022 original size:13 final size:13
Alignment explanation
Indices: 76334006--76334051 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
76333996 AAAGTCCTGA
76334006 AAAAAATAAAAAT
1 AAAAAATAAAAAT
*
76334019 AAAAAGTAAAAAT
1 AAAAAATAAAAAT
*
76334032 ---AAATAAAAGT
1 AAAAAATAAAAAT
76334042 AAAAAATAAA
1 AAAAAATAAA
76334052 TAGTTACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
10 8 0.30
13 19 0.70
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:76334037 original size:17 final size:18
Alignment explanation
Indices: 76334015--76334053 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
76334005 AAAAAAATAA
76334015 AAATAAAAAGT-AAAAAT
1 AAATAAAAAGTAAAAAAT
76334032 AAAT-AAAAGTAAAAAAT
1 AAATAAAAAGTAAAAAAT
76334049 AAATA
1 AAATA
76334054 GTTACTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (18 bp):
AAATAAAAAGTAAAAAAT
Found at i:76334038 original size:23 final size:22
Alignment explanation
Indices: 76334005--76334051 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
76333995 AAAAGTCCTG
*
76334005 AAAAAAATAAAAATAAAAAGTA
1 AAAAAAATAAAAATAAAAAATA
*
76334027 AAAATAAATAAAAGTAAAAAATA
1 AAAA-AAATAAAAATAAAAAATA
76334050 AA
1 AA
76334052 TAGTTACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (22 bp):
AAAAAAATAAAAATAAAAAATA
Found at i:76334635 original size:36 final size:36
Alignment explanation
Indices: 76334594--76334689 Score: 174
Period size: 36 Copynumber: 2.6 Consensus size: 36
76334584 AATCTTTAAG
76334594 GATATGCAATCTTAGATATGATACAATCTTAGATAT
1 GATATGCAATCTTAGATATGATACAATCTTAGATAT
76334630 GATATGCAATCTTAGATATGATACAATCTTAGATAT
1 GATATGCAATCTTAGATATGATACAATCTTAGATAT
76334666 GATATGCAATCTTGAAGATATGAT
1 GATATGCAATCTT--AGATATGAT
76334690 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
36 49 0.84
38 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
GATATGCAATCTTAGATATGATACAATCTTAGATAT
Found at i:76334641 original size:19 final size:19
Alignment explanation
Indices: 76334594--76334689 Score: 146
Period size: 17 Copynumber: 5.2 Consensus size: 19
76334584 AATCTTTAAG
76334594 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76334613 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76334630 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76334649 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
76334666 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
76334687 GAT
1 GAT
76334690 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 0, Indels: 10
0.88 0.00 0.12
Matches are distributed among these distances:
17 34 0.48
19 28 0.39
21 9 0.13
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:76337344 original size:29 final size:29
Alignment explanation
Indices: 76337312--76337380 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
76337302 TTCAAAGAAA
*
76337312 CTTATTTCTTCTCCCATTCAAACTTATTT
1 CTTATTTCTTCTCCCATTCAAACTCATTT
76337341 CTTATTTCTTCTCCCATTCAAACTCATTT
1 CTTATTTCTTCTCCCATTCAAACTCATTT
*
76337370 CTT-CTTCTTCT
1 CTTATTTCTTCT
76337381 TCTTCTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 7 0.18
29 31 0.82
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.52
Consensus pattern (29 bp):
CTTATTTCTTCTCCCATTCAAACTCATTT
Found at i:76337376 original size:3 final size:3
Alignment explanation
Indices: 76337368--76337404 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
76337358 TCAAACTCAT
76337368 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
76337405 CTTTGTTAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:76345770 original size:48 final size:47
Alignment explanation
Indices: 76345718--76345841 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 47
76345708 AGTGATAATT
76345718 TTAAATTTACAATACTGTTTGATATTATT-TTAATTTATGCAAATT-TAA
1 TTAAATTT-CAATACTGTTTGATATT-TTATTAATTTATGC-AATTATAA
* *
76345766 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTGTTTGATATTTTATTAATTTATGCAATTATAA
* *
76345814 TTACAATTTCAATACTGCTTGATTTTTT
1 TTA-AATTTCAATACTGTTTGATATTTT
76345842 TTTTCATTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
47 6 0.09
48 56 0.84
49 5 0.07
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (47 bp):
TTAAATTTCAATACTGTTTGATATTTTATTAATTTATGCAATTATAA
Found at i:76347464 original size:18 final size:18
Alignment explanation
Indices: 76347441--76347483 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
76347431 TGCCAAGTGC
* *
76347441 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCATATAT
76347459 GTATCCTAACCCATATAT
1 GTATCCTAACCCATATAT
*
76347477 GTTTCCT
1 GTATCCT
76347484 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.40
Consensus pattern (18 bp):
GTATCCTAACCCATATAT
Found at i:76351586 original size:20 final size:20
Alignment explanation
Indices: 76351561--76351633 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
76351551 TCGTGTATGT
76351561 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAATTTA
* *
76351581 ATCAATTAACCCTAAAACCTAA
1 ATCAATTAACCCT-AAA-TTTA
*
76351603 ATCAATT---CAT-AATTTA
1 ATCAATTAACCCTAAATTTA
76351619 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
76351634 TACCCTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
16 9 0.22
17 2 0.05
19 4 0.10
20 14 0.34
21 3 0.07
22 9 0.22
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.32
Consensus pattern (20 bp):
ATCAATTAACCCTAAATTTA
Found at i:76352744 original size:2 final size:2
Alignment explanation
Indices: 76352737--76352767 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
76352727 AACTCGAATT
76352737 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76352768 GCAGCCCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76356982 original size:14 final size:14
Alignment explanation
Indices: 76356963--76357015 Score: 60
Period size: 14 Copynumber: 4.1 Consensus size: 14
76356953 ATATAAAAGA
76356963 GAAAGTATTCTTTT
1 GAAAGTATTCTTTT
*
76356977 GAAAGTGTTCTTTT
1 GAAAGTATTCTTTT
76356991 G---G-ATTCTTTT
1 GAAAGTATTCTTTT
*
76357001 GAAAGTGTTCTTTT
1 GAAAGTATTCTTTT
76357015 G
1 G
76357016 GAGTCCTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
10 8 0.25
11 1 0.03
13 1 0.03
14 22 0.69
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.51
Consensus pattern (14 bp):
GAAAGTATTCTTTT
Found at i:76357001 original size:24 final size:24
Alignment explanation
Indices: 76356969--76357017 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
76356959 AAGAGAAAGT
76356969 ATTCTTTTGAAAGTGTTCTTTTGG
1 ATTCTTTTGAAAGTGTTCTTTTGG
76356993 ATTCTTTTGAAAGTGTTCTTTTGG
1 ATTCTTTTGAAAGTGTTCTTTTGG
76357017 A
1 A
76357018 GTCCTATTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.18, C:0.08, G:0.20, T:0.53
Consensus pattern (24 bp):
ATTCTTTTGAAAGTGTTCTTTTGG
Found at i:76358790 original size:24 final size:24
Alignment explanation
Indices: 76358763--76358813 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
76358753 TATTTGTTCA
*
76358763 TTTATATGTTCACTTATTCCTTTG
1 TTTATATATTCACTTATTCCTTTG
* * *
76358787 TTTATTTATTTATTTATTCCTTTG
1 TTTATATATTCACTTATTCCTTTG
76358811 TTT
1 TTT
76358814 GTTTACTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTATATATTCACTTATTCCTTTG
Found at i:76367389 original size:31 final size:32
Alignment explanation
Indices: 76367353--76367413 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
76367343 ATCGCATGTG
* * *
76367353 GAGCTAAACGC-ATTTGTTCAGCTATTCTACA
1 GAGCTAAACACAAGTTGCTCAGCTATTCTACA
76367384 GAGCTAAACACAAGTTGCTCAGCTATTCTA
1 GAGCTAAACACAAGTTGCTCAGCTATTCTA
76367414 TAGAATAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (32 bp):
GAGCTAAACACAAGTTGCTCAGCTATTCTACA
Found at i:76368337 original size:42 final size:42
Alignment explanation
Indices: 76368278--76368365 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
76368268 TAGCAGGAAT
76368278 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
1 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
76368320 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
1 GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
76368362 GAGG
1 GAGG
76368366 TCAGTCGAGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (42 bp):
GAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGA
Found at i:76368571 original size:13 final size:13
Alignment explanation
Indices: 76368553--76368577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76368543 GGACAGAAAC
76368553 ACGGCCGTGCGAT
1 ACGGCCGTGCGAT
76368566 ACGGCCGTGCGA
1 ACGGCCGTGCGA
76368578 AAATAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
ACGGCCGTGCGAT
Found at i:76378605 original size:91 final size:95
Alignment explanation
Indices: 76378446--76378646 Score: 225
Period size: 91 Copynumber: 2.2 Consensus size: 95
76378436 TCTTATTCCC
* * * * *
76378446 TGAAGTTGCAGTGGAACGGATTGAAGTTATCATGGCGAATCTTATCTCCCCGAAGTTGCAGTGGA
1 TGAAGTTGTAGTGGAACGAATTGAAGTTATCATGGCGAACCTTATCTCCCCAAAGTTGCAGTGAA
**
76378511 GCAGAT-TGAAGCCACAAATCCCATACT-CT
66 GCAGATCAAAAGCCACAAATCCCA-ACTCCT
* *
76378540 TGAAGTTGTAGTGGGACGAATTGAAG-T-T-ATGGC-AAGCCTTATCTCCCTAAAGTTGCAGTGA
1 TGAAGTTGTAGTGGAACGAATTGAAGTTATCATGGCGAA-CCTTATCTCCCCAAAGTTGCAGTGA
* ** *
76378601 AGCAGGTCAAAAGTTACAAATCTCAACTCCT
65 AGCAGATCAAAAGCCACAAATCCCAACTCCT
76378632 TGAAGTTGTAGTGGA
1 TGAAGTTGTAGTGGA
76378647 GCAGATTAAA
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
90 2 0.02
91 35 0.39
92 29 0.32
93 1 0.01
94 23 0.26
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (95 bp):
TGAAGTTGTAGTGGAACGAATTGAAGTTATCATGGCGAACCTTATCTCCCCAAAGTTGCAGTGAA
GCAGATCAAAAGCCACAAATCCCAACTCCT
Found at i:76378726 original size:87 final size:89
Alignment explanation
Indices: 76378632--76378961 Score: 319
Period size: 89 Copynumber: 3.7 Consensus size: 89
76378622 CTCAACTCCT
* * * * * * *
76378632 TGAAGTTGTAGTGGAGCAGATTAAAG-T-TAGATCTTGTCTCCCTAAAGTTGTAGGGGAGTAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCCCTAAAGTTGCAGGGGAGCAGAT
76378695 CGGGGATAGCAAATCTTATCTCTC
66 CGGGGATAGCAAATCTTATCTCTC
* ** *
76378719 TAAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCTGTGAAGTTGCAGTGGGA-CAGA
1 TGAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCCCTAAAGTTGCAG-GGGAGCAGA
* ** * *** *
76378783 TTGAAGTTATGGCAGGCCTTATCTCCC
65 TCG--GGGATAGCAAATCTTATCTCTC
* * * * * *
76378810 TGAAGTTGCAGTAGAGCATATTGAAG-T-TAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCCCTAAAGTTGCAGGGGAGCAGAT
*
76378873 CAGGGATAGCAAATCTTATCTCTC
66 CGGGGATAGCAAATCTTATCTCTC
* * * * *
76378897 TGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGAT
1 TGAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCCCTAAAGTTGCAGGGGAGCAGAT
76378962 TAAAGTCACA
Statistics
Matches: 187, Mismatches: 48, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
87 61 0.33
88 6 0.03
89 77 0.41
90 5 0.03
91 38 0.20
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (89 bp):
TGAAGTTGCAGTAGAGCAGATTAAAGATATAAACCTTATCTCCCTAAAGTTGCAGGGGAGCAGAT
CGGGGATAGCAAATCTTATCTCTC
Found at i:76378761 original size:44 final size:44
Alignment explanation
Indices: 76378709--76379003 Score: 211
Period size: 44 Copynumber: 6.7 Consensus size: 44
76378699 GATAGCAAAT
* *
76378709 CTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
** * * * **
76378753 CTTATCTCTGTGAAGTTGCAGT-GGGACAGATTGAAGTTATGGCAGGC
1 CTTATCTCCCTGAAGTTGCAGTAGAG-CAGATTAAAGATAT---AAAC
* * * *
76378800 CTTATCTCCCTGAAGTTGCAGTAGAGCATATTGAAG-T-TAGAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
* * ** * * ** * *
76378842 CTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATA-TAAAC
* * *
76378887 CTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
* * * **
76378931 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG-TCACAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGAT-ATAAAC
* *
76378975 CTTATCTCCCTGAAGTTGCGGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAG
76379004 GTTGAAGTTA
Statistics
Matches: 197, Mismatches: 45, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
42 28 0.14
43 4 0.02
44 97 0.49
45 34 0.17
46 1 0.01
47 31 0.16
48 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGATATAAAC
Found at i:76378873 original size:178 final size:175
Alignment explanation
Indices: 76378576--76379013 Score: 572
Period size: 178 Copynumber: 2.5 Consensus size: 175
76378566 TTATGGCAAG
* * * * * ** * * * *
76378576 CCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTCAAAAGTTACAAATCTCAACTCCTTGAAGTTGT
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAGTCACAAGCCTTATCTCCCTGAAGTTGC
* * *
76378641 AGTGGAGCAGATTAAAGTTAGATCTTGTCTCCCTAAAGTTGTAGGGGAGTAGATCGGGGATAGCA
65 AGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCA
76378706 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
130 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
** * * *
76378752 CCTTATCTCTGTGAAGTTGCAGTGG-GACAGATTGAAGTTATGGCAGGCCTTATCTCCCTGAAGT
1 CCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGTCA---CAAGCCTTATCTCCCTGAAGT
* *
76378816 TGCAGTAGAGCATATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATA
62 TGCAGTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATA
* * *
76378881 GCAAATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAA
127 GCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
* * *
76378930 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAAGTCTTATCTCCCTGAAGTTGCG
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGCCTTATCTCCCTGAAGTTGCA
*
76378995 GTGGAGCAGGTTGAAGTTA
66 GTGGAGCAGATTGAAGTTA
76379014 CGAATCTCAA
Statistics
Matches: 224, Mismatches: 33, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
175 45 0.20
176 25 0.11
178 153 0.68
179 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (175 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCACAAGCCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTGAAGTTAGATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAA
ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATATAAA
Found at i:76378903 original size:45 final size:45
Alignment explanation
Indices: 76378662--76378917 Score: 112
Period size: 45 Copynumber: 5.7 Consensus size: 45
76378652 TTAAAGTTAG
* * *
76378662 ATCTTGTCTCCCTAAAGTTGTAGGGGAGTAGATCGGGGATAGCAA
1 ATCTTATCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAA
* ** * * ** *
76378707 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGATA-TAA
1 ATCTTATCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAA
* ** * * * ** * *
76378751 ACCTTATCTCTGTGAAGTTGCAGTGGGA-CAGATTGAAGTTATGGCAG
1 ATCTTATCTCCCTAAAGTTGCAG-GGGAGTAGA-T-CAGGGATAGCAA
** * * ** * *
76378798 GCCTTATCTCCCTGAAGTTGCA--GTAG-AGCAT-ATTGA-AGTTAG
1 ATCTTATCTCCCTAAAGTTGCAGGGGAGTAG-ATCAGGGATAG-CAA
*
76378840 ATCTTGTCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAA
1 ATCTTATCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAA
* * **
76378885 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 ATCTTATCTCCCTAAAGTTGCAGGGGAGTAGAT
76378918 TAAAGCTATA
Statistics
Matches: 154, Mismatches: 45, Indels: 24
0.69 0.20 0.11
Matches are distributed among these distances:
41 1 0.01
42 23 0.15
44 36 0.23
45 69 0.45
46 5 0.03
47 20 0.13
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCCTAAAGTTGCAGGGGAGTAGATCAGGGATAGCAA
Found at i:76379097 original size:88 final size:88
Alignment explanation
Indices: 76378936--76379099 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 88
76378926 TAAACCTTAT
* * * * *
76378936 CTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAAGTCTTATCTCCCTGAAGTTGCGGTGGAG
1 CTCCCTGAAGTTGCAATGGAGCAGATTAAAGTCACAAGTCCTATCTCCCTGAAGTTGCAGTGGAA
*
76379001 CAGGTTGAAGTTACGAATCTCAA
66 CAGATTGAAGTTACGAATCTCAA
* * *
76379024 CTCCTTGAAGTTGCAATGGAGCAGATTGAAG-CAACAATTCCTATACT-CCTGAAGTTGCAGTGG
1 CTCCCTGAAGTTGCAATGGAGCAGATTAAAGTC-ACAAGTCCTAT-CTCCCTGAAGTTGCAGTGG
*
76379087 AATAGATTGAAGT
64 AACAGATTGAAGT
76379100 GACTAAGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 1 0.02
88 61 0.95
89 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (88 bp):
CTCCCTGAAGTTGCAATGGAGCAGATTAAAGTCACAAGTCCTATCTCCCTGAAGTTGCAGTGGAA
CAGATTGAAGTTACGAATCTCAA
Found at i:76379112 original size:44 final size:43
Alignment explanation
Indices: 76378939--76379113 Score: 158
Period size: 44 Copynumber: 4.0 Consensus size: 43
76378929 ACCTTATCTC
* * *
76378939 CCTGAAGTTGTAGTGGAGCAGATTAAAGTCACAAGTCT-TATCT
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTATA-CT
* * *
76378982 CCCTGAAGTTGCGGTGGAGCAGGTTGAAGTTACGAA-TCTCA-ACT
1 -CCTGAAGTTGCAGTGGAGCAGATTGAAGTAAC-AAGTCT-ATACT
* * *
76379026 CCTTGAAGTTGCAATGGAGCAGATTGAAGCAACAATTCCTATACT
1 CC-TGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGT-CTATACT
** *
76379071 CCTGAAGTTGCAGTGGAATAGATTGAAGTGACTAAGTCTATAC
1 CCTGAAGTTGCAGTGGAGCAGATTGAAGTAAC-AAGTCTATAC
76379114 CTTTAAAGTT
Statistics
Matches: 107, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 4 0.04
44 90 0.84
45 13 0.12
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (43 bp):
CCTGAAGTTGCAGTGGAGCAGATTGAAGTAACAAGTCTATACT
Found at i:76379449 original size:17 final size:17
Alignment explanation
Indices: 76379429--76379465 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
76379419 GACCCTAGCT
76379429 CAATTA-AAACCCAATAA
1 CAATTACAAACCCAA-AA
76379446 CAATTACAAACCCAAAA
1 CAATTACAAACCCAAAA
76379463 CAA
1 CAA
76379466 AAAAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.14
Consensus pattern (17 bp):
CAATTACAAACCCAAAA
Found at i:76384557 original size:13 final size:13
Alignment explanation
Indices: 76384539--76384564 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76384529 AGGAAGAGAT
76384539 TGCTGCATTGGAA
1 TGCTGCATTGGAA
76384552 TGCTGCATTGGAA
1 TGCTGCATTGGAA
76384565 CAAAACCAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (13 bp):
TGCTGCATTGGAA
Found at i:76400142 original size:26 final size:26
Alignment explanation
Indices: 76400096--76400148 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
76400086 TCAAACATGC
*
76400096 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
76400122 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
76400148 A
1 A
76400149 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:76401665 original size:26 final size:26
Alignment explanation
Indices: 76401634--76401741 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
76401624 TGAAATGCCC
* *
76401634 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
76401660 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
76401686 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
76401712 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76401738 ATCA
1 ATCA
76401742 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76404121 original size:26 final size:26
Alignment explanation
Indices: 76404092--76404171 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
76404082 GAAACATTTA
76404092 CATGGAACATTTACCTAACCCATTAT
1 CATGGAACATTTACCTAACCCATTAT
* *
76404118 CATGGAATATTTACCTAATCCATTAT
1 CATGGAACATTTACCTAACCCATTAT
76404144 CATGGAACATTTACCTAACCCATTAT
1 CATGGAACATTTACCTAACCCATTAT
76404170 CA
1 CA
76404172 ATTTGTACCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.33
Consensus pattern (26 bp):
CATGGAACATTTACCTAACCCATTAT
Found at i:76405466 original size:14 final size:13
Alignment explanation
Indices: 76405437--76405478 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
76405427 AAAAATTATA
76405437 AAATTTGAATTAC
1 AAATTTGAATTAC
76405450 AAATTT-AATTAGCC
1 AAATTTGAATTA--C
*
76405464 AAATTTGAATCAC
1 AAATTTGAATTAC
76405477 AA
1 AA
76405479 GTTTTAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 5 0.20
13 9 0.36
14 7 0.28
15 4 0.16
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (13 bp):
AAATTTGAATTAC
Found at i:76406941 original size:50 final size:51
Alignment explanation
Indices: 76406878--76406984 Score: 171
Period size: 50 Copynumber: 2.1 Consensus size: 51
76406868 ATAAGTGATA
* * *
76406878 GGCTACACTTATCTGATCAAGGATAAGTGA-AAGTGATAAGTGATAGCTTC
1 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
*
76406928 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGGTAGCTTC
1 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
76406979 GGCTAC
1 GGCTAC
76406985 CTGATCAGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 28 0.54
51 24 0.46
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (51 bp):
GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
Found at i:76406998 original size:31 final size:31
Alignment explanation
Indices: 76406960--76407046 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
76406950 ACAAATGACA
76406960 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
76406991 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
76407022 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
76407047 AAGTGACAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:76407176 original size:93 final size:95
Alignment explanation
Indices: 76407062--76407298 Score: 250
Period size: 93 Copynumber: 2.5 Consensus size: 95
76407052 ACAAATGATT
* * * *
76407062 TTCGTATAAGACCATATCTGGGATATGGCATCGATATGAT-ATATGCT-A-CTGTATAAGGCCAT
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATG-TGATATG-TGATCTGTATAAGACCAT
* * *
76407124 ATCTGGGATATGGCATC-A-GTGAGATATGTGA
64 AGCTGGGAT-TAGCATCGATATGAGATATGTGA
* * *
76407155 TTCGTGTAAGACCATAGCTGGGCTATGCCATCAATATGTGATATGTGATCTGTGTAAGACCATAG
1 TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCTGTATAAGACCATAG
* *
76407220 CTGGGCTTAGCATCGATATGTGATATGTGA
66 CTGGGATTAGCATCGATATGAGATATGTGA
* * * *
76407250 TTACGTGTAAGACCGTAGCTAGGCTATGGCATTGATATATGAATATGTG
1 TT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTG-ATATGTG
76407299 TAAGACCATA
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
92 2 0.02
93 45 0.38
94 20 0.17
95 13 0.11
96 32 0.27
97 7 0.06
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (95 bp):
TTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCTGTATAAGACCATAG
CTGGGATTAGCATCGATATGAGATATGTGA
Found at i:76407210 original size:48 final size:47
Alignment explanation
Indices: 76407068--76407368 Score: 256
Period size: 42 Copynumber: 6.6 Consensus size: 47
76407058 GATTTTCGTA
* * * *
76407068 TAAGACCATATCTGGGATATGGCATCGATATGAT-ATATGCT-ACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATG-TGATATG-TGATTGTG
* * * * *
76407115 TAAGGCCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-GTG
* *
76407161 TAAGACCATAGCTGGGCTATGCCATCAATATGTGATATGTGATCTGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAT-TGTG
*
76407209 TAAGACCATAGCTGGGCT-TAGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT--GTG
* * * *
76407257 TAAGACCGTAGCTAGGCTATGGCATTGATATATGA-A--T-A-TGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTGTG
76407299 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA-A---GA-TGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATTGTG
* **
76407341 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
76407369 GAAAACGAAG
Statistics
Matches: 216, Mismatches: 26, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.00
42 61 0.28
43 1 0.00
44 2 0.01
45 10 0.05
46 27 0.12
47 47 0.22
48 53 0.25
49 14 0.06
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTGTG
Found at i:76411257 original size:32 final size:32
Alignment explanation
Indices: 76411216--76411277 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
76411206 AATCTCTCAC
*
76411216 CTTTTTCCATAGATTAGAAAAAAAATTGGACT
1 CTTTTTCCATAGATTAAAAAAAAAATTGGACT
76411248 CTTTTTCCATAGATTAAAAAAAAAATTGGA
1 CTTTTTCCATAGATTAAAAAAAAAATTGGA
76411278 TTTACATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (32 bp):
CTTTTTCCATAGATTAAAAAAAAAATTGGACT
Found at i:76427048 original size:24 final size:23
Alignment explanation
Indices: 76426992--76427048 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
76426982 CCTTCCCCTT
* * *
76426992 TCTTTTCCTTTTCTCTTCTTTCC
1 TCTTTTCCCTCTCTATTCTTTCC
*
76427015 TCCTTCTCCCTCTCTATTCTTTTCC
1 T-CTTTTCCCTCTCTATTC-TTTCC
76427040 TCTTTTCCC
1 TCTTTTCCC
76427049 CTTTTCTTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 1 0.04
24 20 0.74
25 6 0.22
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.58
Consensus pattern (23 bp):
TCTTTTCCCTCTCTATTCTTTCC
Found at i:76429031 original size:15 final size:15
Alignment explanation
Indices: 76429011--76429047 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
76429001 GTTCTACTCG
76429011 ACCACGACACCGACC
1 ACCACGACACCGACC
*
76429026 ACCACGACACTGACC
1 ACCACGACACCGACC
76429041 ACCACGA
1 ACCACGA
76429048 TAACCTCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.35, C:0.49, G:0.14, T:0.03
Consensus pattern (15 bp):
ACCACGACACCGACC
Found at i:76430858 original size:30 final size:30
Alignment explanation
Indices: 76430823--76430880 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76430813 TAGGCACTTC
*
76430823 CACACGGATAATCCACATGCCCGTGTGTGA
1 CACACGGATAAGCCACATGCCCGTGTGTGA
* *
76430853 CACACGGGTAGGCCACATGCCCGTGTGT
1 CACACGGATAAGCCACATGCCCGTGTGT
76430881 CATGGCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGATAAGCCACATGCCCGTGTGTGA
Found at i:76434072 original size:25 final size:25
Alignment explanation
Indices: 76434044--76434096 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
76434034 TAGGTTTAAG
76434044 CTTATGAGTAAGATCATTCAAAATT
1 CTTATGAGTAAGATCATTCAAAATT
76434069 CTTATGAGTAAGATCATTCAAAATT
1 CTTATGAGTAAGATCATTCAAAATT
76434094 CTT
1 CTT
76434097 TCTTAATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (25 bp):
CTTATGAGTAAGATCATTCAAAATT
Found at i:76445103 original size:14 final size:13
Alignment explanation
Indices: 76445074--76445115 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
76445064 AAAAATTATA
76445074 AAATTTGAATTAC
1 AAATTTGAATTAC
76445087 AAATTT-AATTAGCC
1 AAATTTGAATTA--C
76445101 AAATTTGAATTAC
1 AAATTTGAATTAC
76445114 AA
1 AA
76445116 GTTTTAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.19
13 9 0.35
14 7 0.27
15 5 0.19
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.36
Consensus pattern (13 bp):
AAATTTGAATTAC
Found at i:76447697 original size:11 final size:11
Alignment explanation
Indices: 76447681--76447715 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
76447671 CCCTTCCCCC
76447681 CTCCCTTCTCT
1 CTCCCTTCTCT
76447692 CTCCCTTCTCT
1 CTCCCTTCTCT
76447703 CTTCCC-TCTCT
1 C-TCCCTTCTCT
76447714 CT
1 CT
76447716 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:76460489 original size:166 final size:164
Alignment explanation
Indices: 76460217--76460542 Score: 424
Period size: 166 Copynumber: 2.0 Consensus size: 164
76460207 TGTTCCAAAG
* * * *
76460217 ATCAACTCATAGGGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTGAGGTATTTTTGATTTCTGCT
1 ATCAACTCATAGCGCGAGAGGTGAGTTGAGCCTCAGGCAACGCTGAGGTATTTTTAATTTCTACT
* *
76460282 TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 TTCCAATTTCTGCTCGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACAC
76460347 GCTAAGGTAATTTCAATTTCTG-TTTGTCAAAAAA
131 GCTAAGGTAATTTCAATTTCTGCTTT-TCAAAAAA
* * * *
76460381 ATCAACTCATATCGCGAGAGGTGAGTTGAGCCT-TGGCTCACATGCTGAGGT-TTTTTCAATTTT
1 ATCAACTCATAGCGCGAGAGGTGAGTTGAGCCTCAGG--CA-ACGCTGAGGTATTTTT-AATTTC
* * * *
76460444 TATTTTTCAATTTCTGTTCGTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
62 TACTTTCCAATTTCTGCTCGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
* * * *
76460509 GCACGCTGAGGTATTTTCGATTTCTGCTTTTCAA
127 ACACGCTAAGGTAATTTCAATTTCTGCTTTTCAA
76460543 TTTCTGTCTT
Statistics
Matches: 139, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
163 2 0.01
164 31 0.22
165 6 0.04
166 97 0.70
167 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33
Consensus pattern (164 bp):
ATCAACTCATAGCGCGAGAGGTGAGTTGAGCCTCAGGCAACGCTGAGGTATTTTTAATTTCTACT
TTCCAATTTCTGCTCGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACAC
GCTAAGGTAATTTCAATTTCTGCTTTTCAAAAAA
Found at i:76460566 original size:89 final size:87
Alignment explanation
Indices: 76460357--76460695 Score: 369
Period size: 89 Copynumber: 3.9 Consensus size: 87
76460347 GCTAAGGTAA
* * *
76460357 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCT-TGGCTCA
1 TTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCA
* * *
76460421 CATGCTGAGGTTTTTTCAATTTTTATT
64 C--GCTGAGGTATTTTCAATTTCT-GT
* * *
76460448 TTTCAATTTCTGTTCGTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCAC
1 TTTCAATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
76460513 GCTGAGGTATTTTCGATTTCTGCT
65 GCTGAGGTATTTTCAATTTCTG-T
* * *
76460537 TTTCAATTTCTGTCTTTCAAAATAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
76460602 GCTGAGGTAATTTCAATTTCTGT
65 GCTGAGGTATTTTCAATTTCTGT
* *
76460625 TTGTCAA-----------AAAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCAC
1 TT-TCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
76460679 GCTGAGGTATTTTCAAT
65 GCTGAGGTATTTTCAAT
76460696 CATTGTTTTT
Statistics
Matches: 219, Mismatches: 24, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
77 58 0.26
88 3 0.01
89 100 0.46
90 1 0.00
91 55 0.25
92 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (87 bp):
TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTATTTTCAATTTCTGT
Found at i:76460665 original size:77 final size:75
Alignment explanation
Indices: 76460537--76460748 Score: 236
Period size: 77 Copynumber: 2.8 Consensus size: 75
76460527 GATTTCTGCT
*
76460537 TTTCAATTTCTGTCTTTCAAAATAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC
76460602 GCTGAGGTAA
66 GCTGAGGTAA
* * * *
76460612 TTTCAATTTCTGT-TTGTCAAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGG
1 TTTCAATTTCTGTCTT-TC--AAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGA
*
76460676 CACGCTGAGGTAT
63 CACGCTGAGGTAA
* * * * * *
76460689 TTTCAATCAT-TGTTTTTC--AAGAATTAATTCATATTGCTAGAGGTGAA-TTGAGCCTCAGGA
1 TTTCAAT-TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCAGGA
76460749 TCATACGCCG
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
73 32 0.28
74 3 0.03
75 15 0.13
77 63 0.54
78 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (75 bp):
TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC
GCTGAGGTAA
Found at i:76460685 original size:255 final size:254
Alignment explanation
Indices: 76460217--76460695 Score: 773
Period size: 255 Copynumber: 1.9 Consensus size: 254
76460207 TGTTCCAAAG
* *
76460217 ATCAACTCATAGGGCGAGAGGTGAGTTGAGCCTCAGGGAACGCTGAGGTATTTTTGATTTCTGCT
1 ATCAACTCATAGGGCGAGAGGTGAGTTAAGCCTCAGGGAACGCTGAGGTATTTTCGATTTCTGCT
*
76460282 TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC
76460347 GCTAAGGTAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGC
131 GCTAAGGTAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGC
* * *
76460412 CTTGGCTCACATGCTGAGGTTTTTTCAATTTTTATTTTTCAATTTCTGTTCGTCAAGAAA
196 CTCGGCGCACA-GCTGAGGTATTTTCAATTTTTATTTTTCAATTTCTGTTCGTCAAGAAA
** *
76460472 ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTGCT
1 ATCAACTCATAGGGCGAGAGGTGAGTTAAGCCTCAGGGAACGCTGAGGTATTTTCGATTTCTGCT
* *
76460537 TTTCAATTTCTG-TCTTTCAAAATAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACA
66 TTCCAATTTCTGCTC-TTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACA
* * *
76460601 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTG
130 CGCTAAGGTAATTTCAATTTCTGTTTGTC--AAAAAAATCAACTCATATCGCGAGAGGTGAGTTG
*
76460666 AGCCTCGGGGCAC-GCTGAGGTATTTTCAAT
193 AGCCTCGGCGCACAGCTGAGGTATTTTCAAT
76460696 CATTGTTTTT
Statistics
Matches: 206, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
254 2 0.01
255 162 0.79
257 42 0.20
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (254 bp):
ATCAACTCATAGGGCGAGAGGTGAGTTAAGCCTCAGGGAACGCTGAGGTATTTTCGATTTCTGCT
TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAC
GCTAAGGTAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGC
CTCGGCGCACAGCTGAGGTATTTTCAATTTTTATTTTTCAATTTCTGTTCGTCAAGAAA
Found at i:76461983 original size:18 final size:18
Alignment explanation
Indices: 76461962--76462000 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
76461952 CTCCCTTCTC
*
76461962 TCTCCCTTCTCTCTCCCT
1 TCTCCCTTCCCTCTCCCT
* *
76461980 TCTCTCTTCCCTCTCTCT
1 TCTCCCTTCCCTCTCCCT
76461998 TCT
1 TCT
76462001 TTTTTTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (18 bp):
TCTCCCTTCCCTCTCCCT
Found at i:76461999 original size:11 final size:11
Alignment explanation
Indices: 76461952--76461997 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
76461942 CCCTTCCCCC
76461952 CTCCCTTCTCT
1 CTCCCTTCTCT
76461963 CTCCCTTCTCT
1 CTCCCTTCTCT
76461974 CTCCCTTCTCT
1 CTCCCTTCTCT
76461985 CTTCCC-TCTCT
1 C-TCCCTTCTCT
76461996 CT
1 CT
76461998 TCTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
10 1 0.03
11 29 0.85
12 4 0.12
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:76462953 original size:26 final size:26
Alignment explanation
Indices: 76462924--76462978 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
76462914 GTATATATTG
*
76462924 TATATGTTTT-ATA-TATGTTATATA
1 TATATATTTTAATATTATGTTATATA
76462948 TATATATTTTAATATTACTAGTTATATA
1 TATATATTTTAATATTA-T-GTTATATA
76462976 TAT
1 TAT
76462979 TTCTTATACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 9 0.35
25 3 0.12
26 2 0.08
27 1 0.04
28 11 0.42
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.56
Consensus pattern (26 bp):
TATATATTTTAATATTATGTTATATA
Found at i:76463063 original size:36 final size:35
Alignment explanation
Indices: 76463016--76463101 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 35
76463006 TTATACCATC
* *
76463016 TTATGTATATATTTTTAAATACTATATT-GTATATG
1 TTATATATATATTTTT-AATACTATATTAGTATATA
* *
76463051 TCTATATATATATTCTTAGTACTATATTACGTATATA
1 T-TATATATATATTTTTAATACTATATTA-GTATATA
*
76463088 TTATGTATATATTT
1 TTATATATATATTT
76463102 ATTTTTACCC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
35 11 0.26
36 24 0.57
37 7 0.17
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (35 bp):
TTATATATATATTTTTAATACTATATTAGTATATA
Found at i:76463299 original size:39 final size:39
Alignment explanation
Indices: 76463255--76463335 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
76463245 AGTATATACT
76463255 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
1 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
76463294 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
1 TCAAACATTATATATAAGTTTACATACATACTCTTAATA
76463333 TCA
1 TCA
76463336 TGTGTATACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.38
Consensus pattern (39 bp):
TCAAACATTATATATAAGTTTACATACATACTCTTAATA
Found at i:76476875 original size:41 final size:41
Alignment explanation
Indices: 76476591--76476867 Score: 414
Period size: 41 Copynumber: 6.8 Consensus size: 41
76476581 ACATAAAATT
* *
76476591 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
76476632 TGCTAGGCAATAAGCCTGATATAATACACTGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
76476673 TGCTAGGCAATAAACCTGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * * *
76476714 TACTAGGCAATAAGCCTGATTTAAAACACCGACACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
76476755 TACTAGGCAATAAGCCTGATTTAAAACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
76476796 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
76476837 TGCTAGGCAATAAGCCTGATATAATACACCG
1 TGCTAGGCAATAAGCCTGATATAATACACCG
76476868 ATACAAAGTC
Statistics
Matches: 220, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
41 217 0.99
42 3 0.01
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:76481996 original size:26 final size:26
Alignment explanation
Indices: 76481967--76482048 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
76481957 TGATACAAAT
76481967 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
76481993 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
76482019 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
76482045 TGAT
1 TGAT
76482049 TGAAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:76483571 original size:25 final size:27
Alignment explanation
Indices: 76483529--76483581 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
76483519 AATTACTGTT
76483529 TACCCCTAGGTGCAAAATT-ACCGAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
** *
76483555 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGCAAAATTGACCGAAA
76483581 T
1 T
76483582 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (27 bp):
TACCCCTAGGTGCAAAATTGACCGAAA
Found at i:76489020 original size:24 final size:25
Alignment explanation
Indices: 76488980--76489058 Score: 142
Period size: 24 Copynumber: 3.2 Consensus size: 25
76488970 TGATACAAAT
76488980 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
76489005 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
76489029 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
76489055 TGAT
1 TGAT
76489059 GTAATTTCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
24 24 0.46
25 22 0.42
26 6 0.12
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.37
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:76493143 original size:47 final size:47
Alignment explanation
Indices: 76493089--76493620 Score: 731
Period size: 47 Copynumber: 11.1 Consensus size: 47
76493079 TTAGGATTTT
*
76493089 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
76493136 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
76493187 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
76493234 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
76493281 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
76493332 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
76493379 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
76493430 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
76493477 ATGTGATGAATGTGAACATGCGTATGTGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
76493524 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCGGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
76493571 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
76493618 ATG
1 ATG
76493621 CGAAACATGT
Statistics
Matches: 435, Mismatches: 38, Indels: 24
0.88 0.08 0.05
Matches are distributed among these distances:
47 301 0.69
48 1 0.00
49 4 0.01
50 1 0.00
51 128 0.29
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:76493200 original size:98 final size:94
Alignment explanation
Indices: 76493089--76493620 Score: 731
Period size: 98 Copynumber: 5.5 Consensus size: 94
76493079 TTAGGATTTT
* *
76493089 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
76493154 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
76493187 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
76493252 TGCGTATGTGTGATAAGGCTGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
** *
76493281 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
76493346 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
** *
76493379 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
76493444 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
76493477 ATGTGATGAATGTGAACATGCGTATGTGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
76493542 TGCATATATGAGATAAGGCGGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
76493571 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
76493621 CGAAACATGT
Statistics
Matches: 397, Mismatches: 32, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
94 154 0.39
96 2 0.01
97 3 0.01
98 238 0.60
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:76493244 original size:145 final size:144
Alignment explanation
Indices: 76493089--76493620 Score: 788
Period size: 145 Copynumber: 3.7 Consensus size: 144
76493079 TTAGGATTTT
* *
76493089 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
76493154 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
76493219 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
* * * *
76493234 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
76493299 CGTATATATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
76493364 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
** *
76493379 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
***
76493444 AA--C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
62 AACCCGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
*
76493506 GACAAGGCCGAATGGCCA
127 GATAAGGCCGAATGGCCA
* * * *
76493524 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCGGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
76493589 TGA-ATATATGTG-G-TAAGGCCGAATGGCTAATG
66 CGATATATATGTGTGATAAGGCCGAATGGCCAATG
76493621 CGAAACATGT
Statistics
Matches: 354, Mismatches: 26, Indels: 18
0.89 0.07 0.05
Matches are distributed among these distances:
141 58 0.16
142 1 0.00
143 6 0.02
144 2 0.01
145 244 0.69
146 1 0.00
147 1 0.00
149 41 0.12
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (144 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCCA
Found at i:76493336 original size:24 final size:24
Alignment explanation
Indices: 76493308--76493383 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
76493298 CCGTATATAT
76493308 ATGTGTGATAAGGCTGAATGGCCA
1 ATGTGTGATAAGGCTGAATGGCCA
* **
76493332 A--TGTGATGAATG-TGAACAT-GCGT
1 ATGTGTGAT-AAGGCTG-A-ATGGCCA
*
76493355 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCTGAATGGCCA
76493379 ATGTG
1 ATGTG
76493384 ATGAATGTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 8 0.21
23 9 0.24
24 14 0.37
25 7 0.18
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (24 bp):
ATGTGTGATAAGGCTGAATGGCCA
Found at i:76493457 original size:23 final size:23
Alignment explanation
Indices: 76493430--76493504 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
76493420 CGAATGGCCA
76493430 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
76493453 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
76493477 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
76493500 ATGTG
1 ATGTG
76493505 TGACAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:76493660 original size:46 final size:46
Alignment explanation
Indices: 76493594--76493684 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
76493584 GAACATGAAT
* * *
76493594 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
76493640 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
76493685 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:76493974 original size:37 final size:37
Alignment explanation
Indices: 76493829--76493973 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
76493819 GGAAATATAT
*
76493829 TCCGGGTAAGACCCGATGACTACGTGTGTAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
76493866 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
76493903 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
76493940 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
76493974 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76497316 original size:16 final size:17
Alignment explanation
Indices: 76497295--76497327 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
76497285 GATGTAGTTG
*
76497295 CCTTTATGT-TGTTTTT
1 CCTTTAGGTATGTTTTT
76497311 CCTTTAGGTATGTTTTT
1 CCTTTAGGTATGTTTTT
76497328 TAGTTAGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.09, C:0.12, G:0.15, T:0.64
Consensus pattern (17 bp):
CCTTTAGGTATGTTTTT
Found at i:76500030 original size:3 final size:3
Alignment explanation
Indices: 76500022--76500073 Score: 68
Period size: 3 Copynumber: 17.3 Consensus size: 3
76500012 ATATGTTGTC
* * * *
76500022 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAG TAA TAG CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
76500070 TAA T
1 TAA T
76500074 GTAAATATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76500211 original size:23 final size:23
Alignment explanation
Indices: 76500168--76500235 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
76500158 AATAATATAA
* *
76500168 TAATAAAGTAA-AAAAATAATAG
1 TAATACAGTAATAACAATAATAG
* * *
76500190 TAATACATTAATAAGAATAATAA
1 TAATACAGTAATAACAATAATAG
* *
76500213 TAGTATAGTAATAACAATAATAG
1 TAATACAGTAATAACAATAATAG
76500236 AAAATAATGA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 9 0.25
23 27 0.75
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (23 bp):
TAATACAGTAATAACAATAATAG
Found at i:76500423 original size:3 final size:3
Alignment explanation
Indices: 76500152--76500393 Score: 67
Period size: 3 Copynumber: 81.7 Consensus size: 3
76500142 TGATGATAGC
* * * *
76500152 AAT AGT AAT AAT -AT AAT AAT AA- AGT AA- AAA AAT AAT AGT AAT ACATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T
* * * * *
76500199 AAT AAG AAT AAT AAT AGT -AT AGT AAT AAC AAT AAT AGAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * * * * *
76500244 GAC GA- AAT AGT AAT AAT AAT AAT AA- ACT AA- AGAGT ACT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT
* * * * *
76500288 ACT AAC AAT AAT -AT AAAT AAT AAT GAA- AAC AAC AAG AGA- AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT
* * * * * **
76500333 AAC AAT AA- CAG AAT AAA AAT AAT GAT AAT AAT AAT AAT AGC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
76500380 AAT AA- AATT AAT AA
1 AAT AAT AA-T AAT AA
76500394 ATAAATATAA
Statistics
Matches: 173, Mismatches: 45, Indels: 42
0.67 0.17 0.16
Matches are distributed among these distances:
2 17 0.10
3 142 0.82
4 11 0.06
5 3 0.02
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:76501984 original size:88 final size:86
Alignment explanation
Indices: 76501835--76502691 Score: 1036
Period size: 87 Copynumber: 10.0 Consensus size: 86
76501825 ATCTATAATT
* * * ** * * *
76501835 TTTAGCCTGTTACCCTATTACTTTGGGGTTTAAGGCCCATCACCTTCGATTTATTTCCCTACTGC
1 TTTA-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
*
76501900 TTAGTGGGTTAAGATCTTGTAAA
65 TTAGGGGGTTAAGATC-TGTAAA
* * * * *
76501923 TTTAGCATGTTACCCTACTGCTTTGGGGTTTAAAGTTCATTGCCTTCGATCTATTTCCCTACTGC
1 TTTA-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
*
76501988 TTAGGGGGTTAAGATCTATAAA
65 TTAGGGGGTTAAGATCTGTAAA
* * * * *
76502010 TTCCACCTGTTACCCTATTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGATTCCCTACTGC
1 TT-TACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
* *
76502075 ATAGGGGGTTAAGA-CTTTTAAA
65 TTAGGGGGTTAAGATC-TGTAAA
* *
76502097 TTCCACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTTGATCTGTTTCCCTACTGC
1 TT-TACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
76502162 TTAGGGGGTTAAGATCTGTAAA
65 TTAGGGGGTTAAGATCTGTAAA
* *
76502184 TCTAACCTGTTACCCTACTGCTTAGGGGTTTGAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
1 T-TTACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
76502249 TTAGGGGGTTAAGATCTGTAAA
65 TTAGGGGGTTAAGATCTGTAAA
* * * *
76502271 TTCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCAATCTGTTTCCCTATTA
1 TT--TACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTG
*
76502336 CTTAGGGGGTTAAGAGCTGT-AA
64 CTTAGGGGGTTAAGATCTGTAAA
* *
76502358 ---ACCTATTACCCTACTACTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCT
1 TTTACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCT
*
76502420 TAGGGGGTTAAGATCTGTGAA
66 TAGGGGGTTAAGATCTGTAAA
* ** * *
76502441 TTTAGCCTGTTACCCTACTACTTAGGGAG-TTAAGGCCCGTCGCTTTCGATCTGTTTCCCTACTG
1 TTTA-CCTGTTACCCTACTGCTTAGGG-GTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTG
* * *
76502505 TTTAGGGGGTTAAGAGCTAT-AA
64 CTTAGGGGGTTAAGATCTGTAAA
* * *
76502527 ---ACCTATTACCATACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTATTTCCCTACTGCT
1 TTTACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCT
*
76502589 TAGGGGGTTAATATCTGTAAA
66 TAGGGGGTTAAGATCTGTAAA
* * ** * *
76502610 TTTAGCCTGTTACCCTACTACTTAAGGAG-TTAAGGCCCGTCGCTTTCGATCTGTTTCCCTACTG
1 TTTA-CCTGTTACCCTACTGCTT-AGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTG
*
76502674 CTTAGGGGGTCAA-ATCTG
64 CTTAGGGGGTTAAGATCTG
76502692 CTATCTTCAA
Statistics
Matches: 678, Mismatches: 72, Indels: 40
0.86 0.09 0.05
Matches are distributed among these distances:
81 1 0.00
82 139 0.21
83 5 0.01
86 11 0.02
87 367 0.54
88 155 0.23
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (86 bp):
TTTACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCT
TAGGGGGTTAAGATCTGTAAA
Found at i:76502080 original size:44 final size:43
Alignment explanation
Indices: 76501930--76502599 Score: 230
Period size: 44 Copynumber: 15.6 Consensus size: 43
76501920 AAATTTAGCA
* * * * * *
76501930 TGTTACCCTACTGCTTTGGGGTTTAAAGTTCATTGCCTTCGATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* * * *** ** *
76501974 TATTTCCCTACTGCTTAGGGGGTTAAGATCTAT-AAATTCCACC
1 T-GTTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* *
76502017 TGTTACCCTATTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* * ** **** ** *
76502061 TGATTCCCTACTGCATAGGGGGTTAA-GACTTTTAAATTCCACC
1 TG-TTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* *
76502104 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTTGATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* ** *** * * *
76502148 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATCTAACC
1 TG-TTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* * * *
76502191 TGTTACCCTACTGCTTAGGGGTTTGAGGTTCATCGCCTTCGATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* ** *** ** *
76502235 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCCAACC
1 TG-TTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTT-TGATC
* * **
76502279 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCAATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* * ** *
76502323 TGTTTCCCTATTACTTAGGGGGTTAA-G---A--G-CTGTAAACC
1 TG-TTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCT-TTGATC
* * * * *
76502361 TATTACCCTACTACTTAGGGGTTTAAGGTTCATCGCCTTCGATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
* ** ** *
76502405 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-GAATTT-AGCC
1 TG-TTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGA-TC
* * * *
76502448 TGTTACCCTACTACTTAGGGAGTTAAGGCCCGTCG-CTTTCGATC
1 TGTT-CCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTT-GATC
* * **
76502492 TGTTTCCCTACTGTTTAGGGGGTTAAGAG-CTATAAACC--T-A--
1 TG-TTCCCTACTGCTTAGGGGGTTAAG-GTCCAT-CGCCTTTGATC
* * * * *
76502532 T-TACCATACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATC
1 TGTTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
*
76502574 TATTTCCCTACTGCTTAGGGGGTTAA
1 T-GTTCCCTACTGCTTAGGGGGTTAA
76502600 TATCTGTAAA
Statistics
Matches: 444, Mismatches: 141, Indels: 82
0.67 0.21 0.12
Matches are distributed among these distances:
37 7 0.02
38 47 0.11
39 1 0.00
40 3 0.01
42 12 0.03
43 123 0.28
44 230 0.52
45 20 0.05
46 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (43 bp):
TGTTCCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTTGATC
Found at i:76502549 original size:169 final size:170
Alignment explanation
Indices: 76501844--76502683 Score: 1046
Period size: 169 Copynumber: 4.9 Consensus size: 170
76501834 TTTTAGCCTG
* * * ** * * * *
76501844 TTACCCTATTACTTTGGGGTTTAAGGCCCATCACCTTCGATTTATTTCCCTACTGCTTAGTGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* * * * *
76501909 TAAGATCTTGTAAATTTAGCATGTTACCCTACTGCTTTGGGGTTTAAAGTTCATTGCCTTCGATC
66 TAAGATC-TGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCTTTCGATC
* * *
76501974 TATTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTCCACCTG
130 TGTTTCCCTACTGCTTAGGGGGTTAAGAGCTATAAA----ACCTA
* * * * *
76502019 TTACCCTATTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGATTCCCTACTGCATAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* *
76502084 TAAGA-CTTTTAAATTCCA-CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTT-GA
66 TAAGATC-TGTAAATT-TAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCG-CTTTCGA
* * *
76502146 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTAACCTG
128 TCTGTTTCCCTACTGCTTAGGGGGTTAAGAGCTAT-AA---AACCTA
*
76502193 TTACCCTACTGCTTAGGGGTTTGAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* * * *
76502258 TAAGATCTGTAAATTCCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCAATC
66 TAAGATCTGTAAATT-TAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCTTTCGATC
* * *
76502323 TGTTTCCCTATTACTTAGGGGGTTAAGAGCTGT-AAACCTA
130 TGTTTCCCTACTGCTTAGGGGGTTAAGAGCTATAAAACCTA
*
76502363 TTACCCTACTACTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* * ** *
76502428 TAAGATCTGTGAATTTAGCCTGTTACCCTACTACTTAGGGAG-TTAAGGCCCGTCGCTTTCGATC
66 TAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG-GTTTAAGGTTCATCGCTTTCGATC
*
76502492 TGTTTCCCTACTGTTTAGGGGGTTAAGAGCTAT-AAACCTA
130 TGTTTCCCTACTGCTTAGGGGGTTAAGAGCTATAAAACCTA
* *
76502532 TTACCATACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTATTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
* * * ** *
76502597 TAATATCTGTAAATTTAGCCTGTTACCCTACTACTTAAGGAG-TTAAGGCCCGTCGCTTTCGATC
66 TAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTT-AGGGGTTTAAGGTTCATCGCTTTCGATC
76502661 TGTTTCCCTACTGCTTAGGGGGT
130 TGTTTCCCTACTGCTTAGGGGGT
76502684 CAAATCTGCT
Statistics
Matches: 600, Mismatches: 54, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
169 216 0.36
170 86 0.14
173 1 0.00
174 159 0.26
175 137 0.23
178 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (170 bp):
TTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGT
TAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCTTTCGATCT
GTTTCCCTACTGCTTAGGGGGTTAAGAGCTATAAAACCTA
Found at i:76502824 original size:44 final size:44
Alignment explanation
Indices: 76502684--76502966 Score: 182
Period size: 44 Copynumber: 6.4 Consensus size: 44
76502674 CTTAGGGGGT
* *
76502684 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGC
1 CAAATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGATGC
** * * * * * * *
76502728 C--ATGCTGAAATCTTCAATCTGCTTCACTGTAAGCAC-AGTAATGT
1 CAAAT-CTGCTATCTTCGATTTG-TTCCCTATAAACACAAG-GATGC
*
76502772 CAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGATGC
1 CAAATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGATGC
* * * * *
76502816 CAAATCTGCTATTTTCAACTTGTTCCCTTTAAGCACAAGGATGC
1 CAAATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGATGC
** * ** * * *
76502860 C--ATGCTGAAATCTTCGATCTGCTTTACTGTAAGCAC-AGGAATGT
1 CAAAT-CTGCTATCTTCGATTTG-TTCCCTATAAACACAAGG-ATGC
* * * * * *
76502904 TAGATCTACTATCTTCGATATGTTCCCTATAAACATAGGGATGC
1 CAAATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGATGC
*
76502948 CAAATCTGCAATCTTCGAT
1 CAAATCTGCTATCTTCGAT
76502967 CTGCTCTCCG
Statistics
Matches: 177, Mismatches: 50, Indels: 24
0.71 0.20 0.10
Matches are distributed among these distances:
42 4 0.02
43 29 0.16
44 110 0.62
45 30 0.17
46 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
CAAATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGATGC
Found at i:76502921 original size:132 final size:132
Alignment explanation
Indices: 76502684--76502963 Score: 452
Period size: 132 Copynumber: 2.1 Consensus size: 132
76502674 CTTAGGGGGT
76502684 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTCAATCTG
1 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTCAATCTG
* * *
76502749 CTTCACTGTAAGCACAGTAATGTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAAGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATATGTTCCCTATAAACACAAGGAT
76502814 GC
131 GC
* * * *
76502816 CAAATCTGCTATTTTCAACTTGTTCCCTTTAAGCACAAGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTCAATCTG
* * * *
76502881 CTTTACTGTAAGCACAGGAATGTTAGATCTACTATCTTCGATATGTTCCCTATAAACATAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATATGTTCCCTATAAACACAAGGAT
76502946 GC
131 GC
*
76502948 CAAATCTGCAATCTTC
1 CAAATCTGCTATCTTC
76502964 GATCTGCTCT
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 135 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (132 bp):
CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTCAATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATATGTTCCCTATAAACACAAGGAT
GC
Found at i:76503090 original size:88 final size:88
Alignment explanation
Indices: 76502959--76503182 Score: 335
Period size: 88 Copynumber: 2.6 Consensus size: 88
76502949 AAATCTGCAA
* ** * *
76502959 TCTTCGATCTGCTCTCCGCC-G-CTACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAA
1 TCTTCGATCTGCTCCCCGCCTGAC-ACAGAGATACCAAATCATCTTGGATCTGCTCCAACGTAAA
*
76503022 CACGTGAAAGCCAAATCAGCTATG
65 CACATGAAAGCCAAATCAGCTATG
* *
76503046 TCTTCGATCTGCTTCCCGCCTGACGCAGAGATACCAAATCATCTTGGATCTGCTCCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGACACAGAGATACCAAATCATCTTGGATCTGCTCCAACGTAAAC
76503111 ACATGAAAGCCAAATCAGCTATG
66 ACATGAAAGCCAAATCAGCTATG
* *
76503134 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGAT
1 TCTTCGATCTGCTCCCCGCCTGACACAGAGATACCAAATCATCTTGGAT
76503183 ATCTTCAGCT
Statistics
Matches: 123, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
87 18 0.15
88 104 0.85
89 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (88 bp):
TCTTCGATCTGCTCCCCGCCTGACACAGAGATACCAAATCATCTTGGATCTGCTCCAACGTAAAC
ACATGAAAGCCAAATCAGCTATG
Found at i:76503170 original size:47 final size:47
Alignment explanation
Indices: 76503031--76503174 Score: 117
Period size: 47 Copynumber: 3.2 Consensus size: 47
76503021 ACACGTGAAA
* **
76503031 GCCAAATCAGCTATGTCTTCGATCTGCTTCCCGCCTGACGCAGAGAT
1 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGAAACAGAGAT
* * * * *
76503078 ACCAAAT---C-A--TCTTGGATCTGCTCCAACG--T-AAACACATGAAA
1 GCCAAATCAGCTATGTCTTCGATCTGCTCC-CCGCCTGAAACAGA-G-AT
*
76503119 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
1 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGAAACAGAGAT
76503166 GCCAAATCA
1 GCCAAATCA
76503175 TCTTGGATAT
Statistics
Matches: 71, Mismatches: 14, Indels: 24
0.65 0.13 0.22
Matches are distributed among these distances:
39 4 0.06
40 2 0.03
41 20 0.28
42 2 0.03
43 1 0.01
44 2 0.03
45 1 0.01
46 2 0.03
47 30 0.42
48 2 0.03
49 5 0.07
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (47 bp):
GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGAAACAGAGAT
Found at i:76503409 original size:61 final size:64
Alignment explanation
Indices: 76503292--76503416 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 64
76503282 TCATGTATCC
76503292 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
76503356 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
76503417 TTATTATATG
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.34
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:76511105 original size:26 final size:26
Alignment explanation
Indices: 76511075--76511182 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
76511065 TGAAATTCCC
76511075 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76511101 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76511127 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76511153 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
76511179 ATCA
1 ATCA
76511183 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76517529 original size:26 final size:26
Alignment explanation
Indices: 76517499--76517633 Score: 234
Period size: 26 Copynumber: 5.2 Consensus size: 26
76517489 TGAAATTCCC
*
76517499 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76517525 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76517551 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76517577 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76517603 ATCATGGAACATTTTACCTAACTCATT
1 ATCATGGAACA-TTTACCTAACCCATT
76517630 ATCA
1 ATCA
76517634 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
26 86 0.83
27 18 0.17
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76521686 original size:3 final size:3
Alignment explanation
Indices: 76521678--76521735 Score: 89
Period size: 3 Copynumber: 19.3 Consensus size: 3
76521668 ATGTTATGTC
* *
76521678 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
76521726 CAA TAA TAA T
1 TAA TAA TAA T
76521736 GTAAATATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76521872 original size:23 final size:23
Alignment explanation
Indices: 76521844--76521897 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
76521834 AAAGTAAAAA
*
76521844 AATAATAGTAATACATTAATAAG
1 AATAATAGTAATACATTAATAAC
* * *
76521867 AATAATAATAGTATATTAATAAC
1 AATAATAGTAATACATTAATAAC
76521890 AATAATAG
1 AATAATAG
76521898 AAAATAATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (23 bp):
AATAATAGTAATACATTAATAAC
Found at i:76522085 original size:3 final size:3
Alignment explanation
Indices: 76521814--76522055 Score: 51
Period size: 3 Copynumber: 81.7 Consensus size: 3
76521804 TGATGATAGC
* * * * *
76521814 AAT AGT AAT AAT -GT AAT AAT AA- AGT AA- AAA AAT AAT AGT AAT ACATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T
* * * * *
76521861 AAT AAG AAT AAT AAT AGT -AT ATT AAT AAC AAT AAT AGAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * * * *
76521906 GAC GA- AAT AGT AAT AAT AAT AA- AA- AACT AA- AGAGT ACT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT A-A-T AAT AAT AAT
* * * * *
76521950 ACT AAC AAT AAT -AT AAAT AAT AAT GAA- AAC AAC AAG AGA- AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT
* * * * * **
76521995 AAC AAT AA- CAG AAT AAA AAT AAT GAT AAT AAT AAT AAT AGC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
76522042 AAT AA- AATT AAT AA
1 AAT AAT AA-T AAT AA
76522056 ATAAATATAA
Statistics
Matches: 172, Mismatches: 45, Indels: 44
0.66 0.17 0.17
Matches are distributed among these distances:
2 19 0.11
3 137 0.80
4 13 0.08
5 3 0.02
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.25
Consensus pattern (3 bp):
AAT
Done.