Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 235 of 253
Found at i:76522836 original size:22 final size:22
Alignment explanation
Indices: 76522811--76522857 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
76522801 GCCCCCTATT
*
76522811 TACAAACGGTTC-TCCCCTAAAA
1 TACAAACGATTCTTCCCC-AAAA
*
76522833 TACAATCGATTCTTCCCCAAAA
1 TACAAACGATTCTTCCCCAAAA
76522855 TAC
1 TAC
76522858 CATCGATCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.36, C:0.32, G:0.06, T:0.26
Consensus pattern (22 bp):
TACAAACGATTCTTCCCCAAAA
Found at i:76529259 original size:46 final size:45
Alignment explanation
Indices: 76529228--76529320 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 45
76529218 ATAAGTTTGC
* * *
76529228 TATTTACAAATATAAGTAAGCTTAGACAAAATTTAATATTCTTACT
1 TATTTAAAAATATAAGTAAGCTTAGACAAAA-TAAATAGTCTTACT
* *
76529274 TATTTAAAAATATAAGTAAGCTTAGACAAAATTTAATATTCTTACT
1 TATTTAAAAATATAAGTAAGCTTAGACAAAA-TAAATAGTCTTACT
76529320 T
1 T
76529321 TAAGTCAGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (45 bp):
TATTTAAAAATATAAGTAAGCTTAGACAAAATAAATAGTCTTACT
Found at i:76532121 original size:25 final size:25
Alignment explanation
Indices: 76532093--76532141 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
76532083 ATATATATCA
76532093 TAAA-ATAGCACATAAAAGAAATAAT
1 TAAACATAGCACATAAAA-AAATAAT
*
76532118 TAAACATAGCATATAAAAAAATAA
1 TAAACATAGCACATAAAAAAATAA
76532142 AACTATGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.20
Consensus pattern (25 bp):
TAAACATAGCACATAAAAAAATAAT
Found at i:76532700 original size:17 final size:17
Alignment explanation
Indices: 76532678--76532711 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
76532668 ATATCATATC
76532678 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
76532695 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
76532712 GCATATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
ATATCATATCTAAGATT
Found at i:76533468 original size:261 final size:261
Alignment explanation
Indices: 76533004--76533491 Score: 712
Period size: 261 Copynumber: 1.9 Consensus size: 261
76532994 CATGGTCCTC
*
76533004 AATCTGCTTATTGCAAACTCAAGACTGTCATGTTGATATCTTCAATCTGCTCTCTGTCGAACAAA
1 AATCTGCTTATTGCAAACTCAAGACTGTCATGTTGATATCTTCAATCTGCTCTCCGTCGAACAAA
* * *
76533069 GAGACGCCAAATCTGCTTCTTCGATTTGTTTTCTGACAATATAGAGATGCCAAATCATCTTAGAT
66 GAGACGCCAAATCTGCTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGAT
* * * * *
76533134 CTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTCTTCGATTTTCTCCTTGTGAACACA
131 CTGCTTCAGCGTAAACACGCGAAAACCAAATCAGCTATGTCTTCAATTTTCTCCTTGTGAACACA
*
76533199 AGGATGCCAAATCATCTTGGATCTACTTCAGTAAAATCATCTGAAGGTCAGATTTGCTATGTCTT
196 AGGATGCCAAACCATCTTGGATCTACTTCAGTAAAATCATCTGAAGGTCAGATTTGCTATGTCTT
76533264 T
261 T
* * * * * * * *
76533265 AATCTGCTTCTTGTAAACTTATGACTGTCCTGTTGATATCTTCGATCTGCTCTCCG-CTGAATAC
1 AATCTGCTTATTGCAAACTCAAGACTGTCATGTTGATATCTTCAATCTGCTCTCCGTC-GAACAA
* *
76533329 AGAGACGCTAAATCTGTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGA
65 AGAGACGCCAAATCTGCTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGA
* **
76533394 TTTGCTTCAGCGTAAGTACGCGAAAACCAAATCAGCTATGTCTTCAATTTGT-TCCTTGT-AAGC
130 TCTGCTTCAGCGTAAACACGCGAAAACCAAATCAGCTATGTCTTCAATTT-TCTCCTTGTGAA-C
*
76533457 ACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
193 ACAAGGATGCCAAACCATCTTGGATCTACTTCAGT
76533492 CATCTAAAGG
Statistics
Matches: 200, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
260 3 0.01
261 196 0.98
262 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (261 bp):
AATCTGCTTATTGCAAACTCAAGACTGTCATGTTGATATCTTCAATCTGCTCTCCGTCGAACAAA
GAGACGCCAAATCTGCTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGAT
CTGCTTCAGCGTAAACACGCGAAAACCAAATCAGCTATGTCTTCAATTTTCTCCTTGTGAACACA
AGGATGCCAAACCATCTTGGATCTACTTCAGTAAAATCATCTGAAGGTCAGATTTGCTATGTCTT
T
Found at i:76534005 original size:206 final size:205
Alignment explanation
Indices: 76533348--76534284 Score: 1593
Period size: 206 Copynumber: 4.6 Consensus size: 205
76533338 AAATCTGTTT
* *
76533348 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
76533413 GCGAAAACCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
76533478 GGATCTGCTTCAG--T---CATCTAAAGGTTAGATCTGCTATGTAACTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
76533538 AGATGCCAGA
196 AGATGCCAGA
* *
76533548 CTTTGATTTGTTCTCTG--AATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
76533611 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
76533676 GGATCTGCTTCAGTATAAACATCTGATGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
76533741 AGATGCCAGA
196 AGATGCCAGA
* * * *
76533751 CTTCAATTTGTTCTCTGATAATACAGGGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
76533816 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
76533881 GGATCTGCTTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
131 GGATCTGC-TTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
76533946 GAGATGCCAGA
195 GAGATGCCAGA
*
76533957 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
76534022 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
76534087 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCACTCCGTCGAATATA
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAA-ATG
* *
76534152 GAGACGCCAAA
195 GAGATGCCAGA
* *
76534163 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAAC-C
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
76534227 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
76534285 TCTGCTATCT
Statistics
Matches: 702, Mismatches: 26, Indels: 13
0.95 0.04 0.02
Matches are distributed among these distances:
198 119 0.17
200 16 0.02
203 68 0.10
205 227 0.32
206 272 0.39
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:76534083 original size:411 final size:404
Alignment explanation
Indices: 76533348--76534284 Score: 1581
Period size: 411 Copynumber: 2.3 Consensus size: 404
76533338 AAATCTGTTT
* *
76533348 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGTAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
76533413 GCGAAAACCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
76533478 GGATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTAACTGCTCTCCGTCGAAATGGAGATG
131 GGATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTAACTGCTCTCCGTCGAAATGGAGATG
* * *
76533543 CCAGACTTTGATTTGTTCTCTGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAG
196 CCAGACTTCGATTTGTTCTCTGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAA
76533608 CACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCAT
261 CACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCAT
* *
76533673 CTTGGATCTGCTTCAGTATAAACATCTGATGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAA-
326 CTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCACTCCGTCGAAT
* * *
76533737 ATGGAGATGCCAGA
391 ATAGAGACGCCAAA
* * * *
76533751 CTTCAATTTGTTCTCTGATAATACAGGGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
*
76533816 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
76533881 GGATCTGCTTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATG
131 GGATCTGC-TTCAG--T---CATCTAAAGGTTAGATCTGCTATGTAACTGCTCTCCGTCGAAATG
76533946 GAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTC
190 GAGATGCCAGACTTCGATTTGTTCTCTG--AATACAGAGATGCCAAATCATCTTAGATTTGCTTC
*
76534011 AGCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGC
253 AGCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGC
76534076 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCACTC
318 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCACTC
76534141 CGTCGAATATAGAGACGCCAAA
383 CGTCGAATATAGAGACGCCAAA
* *
76534163 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAAC-C
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
76534227 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
76534285 TCTGCTATCT
Statistics
Matches: 497, Mismatches: 28, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
403 128 0.26
404 5 0.01
406 1 0.00
409 70 0.14
411 225 0.45
412 68 0.14
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (404 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTAACTGCTCTCCGTCGAAATGGAGATG
CCAGACTTCGATTTGTTCTCTGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAA
CACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCAT
CTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCACTCCGTCGAAT
ATAGAGACGCCAAA
Found at i:76534323 original size:44 final size:44
Alignment explanation
Indices: 76534233--76534726 Score: 375
Period size: 44 Copynumber: 11.2 Consensus size: 44
76534223 AACCGTGAAA
* * * * * *
76534233 GCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGAT
1 GCCAAATCTGCTA--TCTTCGACTTGTTCCCTATAAACACAGGGAT
*
76534279 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
** * * * *
76534323 GCC--ATGCTGAAATCTTCGA-TCTGCTTCGCTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGACT-TG-TTCCCTATAAACACAGGGAT
* * * *
76534367 GTCAGATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
* * *
76534411 GCCAAATATGCTATCTTCAACTTGTTCCCTATAAAAACAGGGAT
1 GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
** * * * *
76534455 GCC--ATGCTGAAATCTTCGA-TCTGCTTCGCTGTAAGCACAGGAAT
1 GCCAAAT-CTGCTATCTTCGACT-TG-TTCCCTATAAACACAGGGAT
* * * *
76534499 GTCAGATCTGCTATCTTCGATTTGTTCCCTATAAGCACAGGGAT
1 GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
* *
76534543 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACATGGAT
1 GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
** *
76534587 GCC--ATGCTGAAATCTTCAACTTGTTCCCTATAAACACAGGGAT
1 GCCAAAT-CTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
** * * * *
76534630 GCC--ATGCTGAAATCTGCGA-TCTGCTTCGCC-GTAAGCACA-AGAGT
1 GCCAAAT-CTGCTATCTTCGACT-TG-TTC-CCTATAAACACAGGGA-T
* * *
76534674 GTCAGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
76534718 GCCAAATCT
1 GCCAAATCT
76534727 TGTTTCTTTG
Statistics
Matches: 361, Mismatches: 65, Indels: 46
0.76 0.14 0.10
Matches are distributed among these distances:
42 9 0.02
43 80 0.22
44 210 0.58
45 41 0.11
46 21 0.06
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGAT
Found at i:76534411 original size:132 final size:132
Alignment explanation
Indices: 76534248--76534721 Score: 645
Period size: 132 Copynumber: 3.6 Consensus size: 132
76534238 ATCAGCTATG
* * *
76534248 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
76534313 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGC
76534378 TA
131 TA
* * *
76534380 TCTTCAATTTGTTCCCTATAAACACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
*
76534445 AAACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGC
76534510 TA
131 TA
76534512 TCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
1 TCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * * * * * *
76534577 ACACATGGATGCCATGCTGAAATCTTC-AACTTG-TTCCCTATAAACACAGGGATG-C-CATGCT
66 ACACAGGGATGCCATGCTGAAATCTTCGATC-TGCTTCGCTGTAAGCACAGGAATGTCAGAT-CT
**
76534638 GAAA
129 GCTA
* * * * * * * *
76534642 TCTGCGATCTGCTTCGCC-GTAAGCACA-AGAGTGTCAGATCTGCTATCTTCGATTTGTTCCCTA
1 TCTTCGATTTG-TTC-CCTATAAGCACAGGGA-TGCCAAATCTGCTATCTTCAACTTGTTCCCTA
76534705 TAAACACAGGGATGCCA
63 TAAACACAGGGATGCCA
76534722 AATCTTGTTT
Statistics
Matches: 308, Mismatches: 29, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
129 2 0.01
130 16 0.05
131 74 0.24
132 216 0.70
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGC
TA
Found at i:76534652 original size:175 final size:175
Alignment explanation
Indices: 76534334--76534726 Score: 599
Period size: 175 Copynumber: 2.2 Consensus size: 175
76534324 CCATGCTGAA
* * * * * * *
76534334 ATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATTTGTTCCCTAT
1 ATCTTCGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
**
76534399 AAACACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTATAAAAACAGGGATGCCATGCTG
65 AAACACAGGGATGCC-AATATGAAATCTTCAACTTGTTCCCTATAAAAACAGGGATGCCATGCTG
* * *
76534464 AAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGCT
129 AAATCTGCGATCTGCTTCGCCGTAAGCACAAGAATGTCAGATCTGCT
76534511 ATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 ATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
* * *
76534576 AACACATGGATGCC-ATGCTGAAATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGA
66 AACACAGGGATGCCAAT-ATGAAATCTTCAACTTGTTCCCTATAAAAACAGGGATGCCATGCTGA
*
76534640 AATCTGCGATCTGCTTCGCCGTAAGCACAAGAGTGTCAGATCTGCT
130 AATCTGCGATCTGCTTCGCCGTAAGCACAAGAATGTCAGATCTGCT
*
76534686 ATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCT
1 ATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCT
76534727 TGTTTCTTTG
Statistics
Matches: 198, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
174 2 0.01
175 125 0.63
176 60 0.30
177 11 0.06
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (175 bp):
ATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
AACACAGGGATGCCAATATGAAATCTTCAACTTGTTCCCTATAAAAACAGGGATGCCATGCTGAA
ATCTGCGATCTGCTTCGCCGTAAGCACAAGAATGTCAGATCTGCT
Found at i:76535600 original size:16 final size:15
Alignment explanation
Indices: 76535579--76535631 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 15
76535569 GGCCTCTCCA
76535579 TTTTTCTTTTTTCATT
1 TTTTTCTTTTTT-ATT
76535595 TTTTTCTTTTTTATT
1 TTTTTCTTTTTTATT
*
76535610 TTTATTTTCTTTTTATT
1 TTT-TTCT-TTTTTATT
76535627 TTTTT
1 TTTTT
76535632 TTCTTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 6 0.18
16 17 0.50
17 11 0.32
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTTATT
Found at i:76535631 original size:27 final size:27
Alignment explanation
Indices: 76535587--76535650 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
76535577 CATTTTTCTT
76535587 TTTTCATTTTTTTCTTTTTTATTTTTA
1 TTTTCATTTTTTTCTTTTTTATTTTTA
*
76535614 TTTTC-TTTTTATT-TTTTTT-TCTTT-
1 TTTTCATTTTT-TTCTTTTTTATTTTTA
*
76535638 TTTTCCTTTTTTT
1 TTTTCATTTTTTT
76535651 TGAAATAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
24 7 0.21
25 9 0.26
26 11 0.32
27 7 0.21
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.84
Consensus pattern (27 bp):
TTTTCATTTTTTTCTTTTTTATTTTTA
Found at i:76535633 original size:16 final size:16
Alignment explanation
Indices: 76535579--76535639 Score: 79
Period size: 17 Copynumber: 3.7 Consensus size: 16
76535569 GGCCTCTCCA
*
76535579 TTTTTCTTTTT-TCATT
1 TTTTTCTTTTTAT-TTT
76535595 TTTTTCTTTTTTATTTT
1 TTTTTC-TTTTTATTTT
76535612 TATTTTCTTTTTATTTT
1 T-TTTTCTTTTTATTTT
76535629 TTTTTCTTTTT
1 TTTTTCTTTTT
76535640 TTCCTTTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
16 16 0.39
17 19 0.46
18 6 0.15
ACGTcount: A:0.07, C:0.08, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTATTTT
Found at i:76535647 original size:16 final size:16
Alignment explanation
Indices: 76535579--76535650 Score: 76
Period size: 17 Copynumber: 4.3 Consensus size: 16
76535569 GGCCTCTCCA
76535579 TTTTTC-TTTTTTCATT
1 TTTTTCTTTTTTTC-TT
*
76535595 TTTTTCTTTTTTATTTT
1 TTTTTCTTTTTT-TCTT
76535612 TATTTTCTTTTTATT-TT
1 T-TTTTCTTTTT-TTCTT
76535629 TTTTTCTTTTTTTCCTT
1 TTTTTCTTTTTTT-CTT
76535646 TTTTT
1 TTTTT
76535651 TGAAATAGAA
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
15 2 0.04
16 16 0.33
17 18 0.37
18 12 0.24
19 1 0.02
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTTTCTT
Found at i:76540807 original size:25 final size:28
Alignment explanation
Indices: 76540770--76540823 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
76540760 AAACTAATGC
76540770 AAAAATAAGATAAAT-G-ACATATACAA
1 AAAAATAAGATAAATAGAACATATACAA
* *
76540796 AAAAATGA-ATAAATAGAACATTTACAA
1 AAAAATAAGATAAATAGAACATATACAA
76540823 A
1 A
76540824 TTATAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 8 0.33
27 10 0.42
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.20
Consensus pattern (28 bp):
AAAAATAAGATAAATAGAACATATACAA
Found at i:76541337 original size:19 final size:19
Alignment explanation
Indices: 76541295--76541355 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
76541285 CATATCATAT
76541295 CATATCATATCTAAGATT-
1 CATATCATATCTAAGATTG
76541313 -ATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
76541331 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
76541350 CATATC
1 CATATC
76541356 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.41
19 24 0.59
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:76545264 original size:23 final size:22
Alignment explanation
Indices: 76545232--76545274 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
76545222 GGATAGGAAG
76545232 GTTTTTGAAAA-ATATGCATTTT
1 GTTTTTGAAAACAT-TGCATTTT
76545254 GTTTTCTGAAAACATTGCATT
1 GTTTT-TGAAAACATTGCATT
76545275 CACATAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 12 0.63
24 2 0.11
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (22 bp):
GTTTTTGAAAACATTGCATTTT
Found at i:76545265 original size:22 final size:23
Alignment explanation
Indices: 76545232--76545274 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
76545222 GGATAGGAAG
*
76545232 GTTTTTGAAAAATA-TGCATTTT
1 GTTTTTGAAAAACATTGCATTTT
76545254 GTTTTCTG-AAAACATTGCATT
1 GTTTT-TGAAAAACATTGCATT
76545275 CACATAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (23 bp):
GTTTTTGAAAAACATTGCATTTT
Found at i:76555077 original size:21 final size:22
Alignment explanation
Indices: 76555033--76555094 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
76555023 ATATAGTTAT
*
76555033 TAAAATATAT-ACATACTATAA
1 TAAAATATATGACATAATATAA
*
76555054 TAAAATATATGA-ATAATATGA
1 TAAAATATATGACATAATATAA
* *
76555075 TAAAAAATATG-CGTAATATA
1 TAAAATATATGACATAATATA
76555095 GAGTATAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.32
Consensus pattern (22 bp):
TAAAATATATGACATAATATAA
Found at i:76555327 original size:3 final size:3
Alignment explanation
Indices: 76555321--76555378 Score: 62
Period size: 3 Copynumber: 18.3 Consensus size: 3
76555311 TAATAAATAC
* * *
76555321 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT ACAG AGAT TAT AATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AA-T
76555369 AAT AAT AAT A
1 AAT AAT AAT A
76555379 GTAAATAACA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
3 40 0.87
4 6 0.13
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:76555333 original size:18 final size:17
Alignment explanation
Indices: 76555310--76555356 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 17
76555300 ACTACTACAT
76555310 ATAATAAATACAATAATA
1 ATAAT-AATACAATAATA
76555328 ATAATAATAACAATAATA
1 ATAATAAT-ACAATAATA
76555346 ATAATAATACA
1 ATAATAATACA
76555357 GAGATTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.21
18 22 0.79
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (17 bp):
ATAATAATACAATAATA
Found at i:76555858 original size:11 final size:11
Alignment explanation
Indices: 76555842--76555882 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
76555832 TTTGTGAGGG
76555842 GAAAAAAGAAA
1 GAAAAAAGAAA
76555853 GAAAAAAGAAA
1 GAAAAAAGAAA
* *
76555864 GAGAAGAAGAGA
1 GA-AAAAAGAAA
76555876 GAAAAAA
1 GAAAAAA
76555883 AAGAGAGGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:76555898 original size:22 final size:22
Alignment explanation
Indices: 76555847--76555888 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
76555837 GAGGGGAAAA
76555847 AAGAA-AGA-AAAAAGAAAGAG
1 AAGAAGAGAGAAAAAGAAAGAG
76555867 AAGAAGAGAGAAAAA-AAAGAG
1 AAGAAGAGAGAAAAAGAAAGAG
76555888 A
1 A
76555889 GGAGGGAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (22 bp):
AAGAAGAGAGAAAAAGAAAGAG
Found at i:76557116 original size:44 final size:44
Alignment explanation
Indices: 76557058--76557173 Score: 160
Period size: 44 Copynumber: 2.6 Consensus size: 44
76557048 TCCTCGATCA
* *
76557058 GCTCCACTGTAACTTCAGGGGGACAAAACTTGCAACTTTGACCT
1 GCTCCACTGCAACTTCAGGGAGACAAAACTTGCAACTTTGACCT
* * * * *
76557102 GCTCCGCTGCAACTTCAGGGAGACAAGACTTGTATCTTTGGCCT
1 GCTCCACTGCAACTTCAGGGAGACAAAACTTGCAACTTTGACCT
*
76557146 GCTCCACTGCAACTTCAGGGAAACAAAA
1 GCTCCACTGCAACTTCAGGGAGACAAAA
76557174 TCTGGTGTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGACAAAACTTGCAACTTTGACCT
Found at i:76557561 original size:13 final size:13
Alignment explanation
Indices: 76557533--76557567 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
76557523 TGAGTTGATT
76557533 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
76557546 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
76557560 TTTGAAAA
1 TTTGAAAA
76557568 TATCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:76557584 original size:182 final size:179
Alignment explanation
Indices: 76557280--76557812 Score: 541
Period size: 184 Copynumber: 2.9 Consensus size: 179
76557270 CAAACATTAA
* * * * * *
76557280 AAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAATTCACCTCTCGCAATATGAGTT
1 AAACAGGAATTTAAAATACCTCAGCGTGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAGTT
* * ** *
76557345 GGTCTTTTTGAAACTTAATTTGAAAAGTTGATTTTTGAAAATACCTCGACATGTGACCCGAGGCT
66 -G-ATTTTTGAAAC-GAATTTGAAAA-CAGA-TTTTGAAAATACCTCGGCATGTGACCCGAGGCT
* ** **
76557410 CAACTCACCTCTCGCATTATGAGTTGATTTTTTTTTTAAAAATGTAAATTGAA-G
126 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTAGTAAAAAT-TAAACAGAATG
*
76557464 AAACAGGAATTTAAAATACCTCAGCGTGTGAACCAATGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGGAATTTAAAATACCTCAGCGTGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAGTT
*
76557529 GATTTTTGAAAACAGAATTTGCAAAACAGATTTTGAAAATATCTCGGCATGTGACCCGAGGCTCA
66 GATTTTTG-AAAC-GAATTTG-AAAACAGATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCA
* ** *
76557594 ACTCACCTCTCGTAATATGAGTTGATTTTTGAAGAGTAGAAATTAAACAGAATTCG
128 ACTCACCTCTCGCAATATGAGTTGATTTTT--TTAGTAAAAATTAAACAGAA-T-G
* * * * * *
76557650 AAAAATAGAATTTGAAAATACCTCGGCATGTGACCCAAGGTTCAACTCACCTCTCGCAATATGAG
1 AAACA-GGAATTT-AAAATACCTCAGCGTGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * ** * * * *
76557715 TTGATTTTTTTGAAACGTAAATTAAAGAACAAAAATTGAACATACCTCAGC--GTGTCCTGAGGC
64 TTGA--TTTTTGAAACG-AATTTGAA-AACAGATTTTGAAAATACCTCGGCATGTGACCCGAGGC
76557778 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
125 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
76557813 GAAACATAAA
Statistics
Matches: 293, Mismatches: 43, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
182 67 0.23
183 20 0.07
184 68 0.23
186 5 0.02
187 48 0.16
188 53 0.18
189 26 0.09
190 6 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (179 bp):
AAACAGGAATTTAAAATACCTCAGCGTGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAACGAATTTGAAAACAGATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTTAGTAAAAATTAAACAGAATG
Found at i:76557605 original size:88 final size:88
Alignment explanation
Indices: 76557241--76557626 Score: 336
Period size: 88 Copynumber: 4.3 Consensus size: 88
76557231 TCAACTTATT
* * *
76557241 TCTCGCAATATG-GATTGACTCTTTGAAAACA-AACATT-AAAAACAGAAATTGAAAATAGCTCA
1 TCTCGCAATATGAG-TTGA-TTTTTGAAAACAGAA-ATTGAAAAACAGAATTTGAAAATACCTCA
** * *
76557303 GCGCGTGAGCCAAGGCTCAATTCACC
63 GCATGTGACCCAAGGCTCAACTCACC
* ** * *** *
76557329 TCTCGCAATATGAGTTGGTCTTTTTG-AAACTTAATTTGAAAAGTTGATTTTTGAAAATACCTC-
1 TCTCGCAATATGAGTT-G-ATTTTTGAAAACAGAAATTGAAAAACAGA-ATTTGAAAATACCTCA
*
76557392 GACATGTGACCCGAGGCTCAACTCACC
63 G-CATGTGACCCAAGGCTCAACTCACC
* *
76557419 TCTCGCATTATGAGTTGATTTTTTTTTTAAAA-ATGTAAATTGAAGAAACAGGAATTT-AAAATA
1 TCTCGCAATATGAGTTGA----TTTTTGAAAACA-G-AAATTGAA-AAACA-GAATTTGAAAATA
* * *
76557482 CCTCAGCGTGTGAACCAATGCTCAACTCACC
58 CCTCAGCATGTGACCCAAGGCTCAACTCACC
* * * * *
76557513 TCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAACAGATTTTGAAAATATCTCGGCA
1 TCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGAATTTGAAAATACCTCAGCA
*
76557578 TGTGACCCGAGGCTCAACTCACC
66 TGTGACCCAAGGCTCAACTCACC
*
76557601 TCTCGTAATATGAGTTGATTTTTGAA
1 TCTCGCAATATGAGTTGATTTTTGAA
76557627 GAGTAGAAAT
Statistics
Matches: 238, Mismatches: 41, Indels: 38
0.75 0.13 0.12
Matches are distributed among these distances:
87 5 0.02
88 81 0.34
89 23 0.10
90 57 0.24
91 1 0.00
92 5 0.02
93 3 0.01
94 55 0.23
95 6 0.03
96 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (88 bp):
TCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAACAGAATTTGAAAATACCTCAGCA
TGTGACCCAAGGCTCAACTCACC
Found at i:76557737 original size:100 final size:98
Alignment explanation
Indices: 76557538--76557824 Score: 314
Period size: 100 Copynumber: 3.0 Consensus size: 98
76557528 TGATTTTTGA
* * *
76557538 AAACAGAATTTGCAAAACAGATTTTGAAAATATCTCGGCATGTGACCCGAGGCTCAACTCACCTC
1 AAACAGAATTCG-AAAA-AGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
*
76557603 TCGTAATATGAGTTGA--TTTTTGAAGA-GTAGAAATT
64 TCGCAATATGAGTTGATTTTTTTGAA-ACGT--AAATT
* *
76557638 AAACAGAATTCGAAAAATAGAATTTGAAAATACCTCGGCATGTGACCCAAGGTTCAACTCACCTC
1 AAACAGAATTCG-AAAA-AGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
76557703 TCGCAATATGAGTTGATTTTTTTGAAACGTAAATT
64 TCGCAATATGAGTTGATTTTTTTGAAACGTAAATT
* * * *
76557738 -AA-AGAA--C---AAA-AA-TTGAACATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTC
1 AAACAGAATTCGAAAAAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTC
*
76557792 GCAATATGAGTTGATTTTTTTGAAACATAAATT
66 GCAATATGAGTTGATTTTTTTGAAACGTAAATT
76557825 GAAAATACCT
Statistics
Matches: 169, Mismatches: 15, Indels: 19
0.83 0.07 0.09
Matches are distributed among these distances:
87 54 0.32
89 14 0.08
90 2 0.01
91 1 0.01
92 2 0.01
96 1 0.01
98 4 0.02
99 2 0.01
100 78 0.46
101 1 0.01
102 10 0.06
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (98 bp):
AAACAGAATTCGAAAAAGAATTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTTGAAACGTAAATT
Found at i:76557944 original size:73 final size:73
Alignment explanation
Indices: 76557742--76558052 Score: 408
Period size: 73 Copynumber: 4.2 Consensus size: 73
76557732 TAAATTAAAG
* * *
76557742 AACAAAAATTGAACATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
***
76557807 TTTTTTGA
66 TTTTGAAA
* * * * *
76557815 AACATAAATTGAAAATACCTCGGCATGTGACCC-GAGACTCAATTCACCTCTAGCAATATGAATT
1 AACATAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
76557879 GATTTTTGAAA
63 GATTTTTGAAA
** ** * *
76557890 AACATATGTTGAAAATACCTCAGTATGCCCTGAGGCTCAACTCACCTCCCGCAATGTGAGTTGAT
1 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
76557955 TTTTGAAA
66 TTTTGAAA
76557963 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
76558028 TTTTTTAAA
65 TTTTTGAAA
76558037 AAGCATAAATTGAAAA
1 AA-CATAAATTGAAAA
76558053 AAAAAACAGA
Statistics
Matches: 203, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
72 3 0.01
73 117 0.58
74 10 0.05
75 71 0.35
76 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (73 bp):
AACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAA
Found at i:76558033 original size:148 final size:147
Alignment explanation
Indices: 76557747--76558052 Score: 402
Period size: 148 Copynumber: 2.1 Consensus size: 147
76557737 TAAAGAACAA
* * * * *
76557747 AAATTGAACATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTG
** * *
76557812 TGAAACATAAATTGAAAATACCTCGGCATGTGACCCGAGACTCAATTCACCTCTAGCAATATGAA
66 AAAAACATAAATTGAAAATACCTCAGCA-GTGACCCGAGACTCAACTCACCTCTAGCAATATGAA
76557877 TTGATTTTTGAAAAA-CAT
130 TTGATTTTT-AAAAAGCAT
** * *
76557895 ATGTTGAAAATACCTCAGTATGCCCTGAGGCTCAACTCACCTCCCGCAATGTGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTG
* * *
76557960 AAAAACATAAATTGAAAATACCTCAGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAG
66 AAAAACATAAATTGAAAATACCTCAGCAGTGACCC-GAGACTCAACTCACCTCTAGCAATATGAA
76558023 TTGATTTTTTTAAAAAGCAT
130 TTGA--TTTTTAAAAAGCAT
76558043 AAATTGAAAA
1 AAATTGAAAA
76558053 AAAAAACAGA
Statistics
Matches: 136, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
145 3 0.02
146 32 0.24
147 5 0.04
148 96 0.71
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (147 bp):
AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTG
AAAAACATAAATTGAAAATACCTCAGCAGTGACCCGAGACTCAACTCACCTCTAGCAATATGAAT
TGATTTTTAAAAAGCAT
Found at i:76558981 original size:44 final size:40
Alignment explanation
Indices: 76558910--76559016 Score: 110
Period size: 44 Copynumber: 2.6 Consensus size: 40
76558900 GCTTCATTAG
* *
76558910 GACGCCC-TTTCAGATTTTCATCCTAATCTTTTGTGTTAATCAA
1 GACGCCCTTTTCGGGTTTTCATCCTAATCTTTT-T-TT--TCAA
*
76558953 GACGCCCTTTTCGGGTTTTCA-CCTTAATCTTTTTTTTTAA
1 GACGCCCTTTTCGGGTTTTCATCC-TAATCTTTTTTTTCAA
*
76558993 GATGCCCTTTTTCGGGTTTTCATC
1 GACGCCC-TTTTCGGGTTTTCATC
76559017 TTGATTTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
40 9 0.16
41 14 0.25
42 3 0.05
43 10 0.18
44 20 0.36
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.46
Consensus pattern (40 bp):
GACGCCCTTTTCGGGTTTTCATCCTAATCTTTTTTTTCAA
Found at i:76559027 original size:41 final size:40
Alignment explanation
Indices: 76558951--76559027 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 40
76558941 TGTGTTAATC
76558951 AAGACGCCCTTTTCGGGTTTTCACCTTAATCTTTTTTTTT
1 AAGACGCCCTTTTCGGGTTTTCACCTTAATCTTTTTTTTT
* * *
76558991 AAGATGCCCTTTTTCGGGTTTTCATCTTGAT-TTTTTT
1 AAGACGCCC-TTTTCGGGTTTTCACCTTAATCTTTTTT
76559028 CAAGCATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 14 0.42
41 19 0.58
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.52
Consensus pattern (40 bp):
AAGACGCCCTTTTCGGGTTTTCACCTTAATCTTTTTTTTT
Found at i:76570270 original size:21 final size:22
Alignment explanation
Indices: 76570246--76570289 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
76570236 TTTTATGGAT
76570246 TTTTGAAAA-TTATTTA-ATAAA
1 TTTT-AAAAGTTATTTACATAAA
*
76570267 TTTTAAAAGTTTTTTACATAAA
1 TTTTAAAAGTTATTTACATAAA
76570289 T
1 T
76570290 ATTTCTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 10 0.50
22 6 0.30
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
TTTTAAAAGTTATTTACATAAA
Found at i:76573294 original size:26 final size:26
Alignment explanation
Indices: 76573264--76573371 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
76573254 TGAAATTCCC
76573264 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76573290 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76573316 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76573342 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76573368 ATCA
1 ATCA
76573372 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76575868 original size:17 final size:17
Alignment explanation
Indices: 76575846--76575880 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
76575836 AGTTCAATTG
76575846 ATTTTTAATATTTTTTT
1 ATTTTTAATATTTTTTT
*
76575863 ATTTTTTATATTTTTTT
1 ATTTTTAATATTTTTTT
76575880 A
1 A
76575881 ATGATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
ATTTTTAATATTTTTTT
Found at i:76575878 original size:9 final size:9
Alignment explanation
Indices: 76575846--76575878 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
76575836 AGTTCAATTG
*
76575846 ATTTTTAAT
1 ATTTTTTAT
76575855 ATTTTTT-T
1 ATTTTTTAT
76575863 ATTTTTTAT
1 ATTTTTTAT
76575872 ATTTTTT
1 ATTTTTT
76575879 TAATGATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:76578576 original size:7 final size:7
Alignment explanation
Indices: 76578546--76578596 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
76578536 TTAGTCTCTC
*
76578546 TTCTCTT
1 TTCTTTT
76578553 TTCGTTTCT
1 TTC-TTT-T
*
76578562 TTCCTTT
1 TTCTTTT
76578569 TTCTTTT
1 TTCTTTT
76578576 TTCTTTT
1 TTCTTTT
76578583 TTCTTTT
1 TTCTTTT
76578590 TT-TTTT
1 TTCTTTT
76578596 T
1 T
76578597 GAGATTTTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
6 5 0.13
7 26 0.67
8 4 0.10
9 4 0.10
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (7 bp):
TTCTTTT
Found at i:76578585 original size:21 final size:22
Alignment explanation
Indices: 76578546--76578596 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
76578536 TTAGTCTCTC
*
76578546 TTCTCTTTTCGTTTCTTTCCTTT
1 TTCTTTTTTCGTTTCTTT-CTTT
76578569 TTCTTTTTTC-TTT-TTTCTTT
1 TTCTTTTTTCGTTTCTTTCTTT
76578589 TT-TTTTTT
1 TTCTTTTTT
76578597 GAGATTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 6 0.22
20 6 0.22
21 3 0.11
22 3 0.11
23 9 0.33
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (22 bp):
TTCTTTTTTCGTTTCTTTCTTT
Found at i:76583553 original size:3 final size:3
Alignment explanation
Indices: 76583547--76583600 Score: 63
Period size: 3 Copynumber: 17.0 Consensus size: 3
76583537 ACTACTACAT
* *
76583547 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CAGA GATT ATA ATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA ATA A-TA ATA
76583595 ATA ATA
1 ATA ATA
76583601 GTAAATATCA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:76587023 original size:26 final size:26
Alignment explanation
Indices: 76586992--76587098 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
76586982 TGAAATTCCC
76586992 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
76587018 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
76587044 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
76587070 ATCATGGAACATTTACCT-AACCATT
1 ATCATGGAACATTTACCTAAACCATT
76587095 ATCA
1 ATCA
76587099 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 10 0.13
26 66 0.87
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:76594010 original size:26 final size:26
Alignment explanation
Indices: 76593979--76594138 Score: 259
Period size: 26 Copynumber: 6.2 Consensus size: 26
76593969 TGAAATGCCC
76593979 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
76594005 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
76594031 ATCATGGAATATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
76594057 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
76594083 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
76594109 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
76594135 ATCA
1 ATCA
76594139 ATTTGTACCA
Statistics
Matches: 124, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
25 3 0.02
26 119 0.96
27 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:76594051 original size:52 final size:52
Alignment explanation
Indices: 76593979--76594138 Score: 293
Period size: 52 Copynumber: 3.1 Consensus size: 52
76593969 TGAAATGCCC
*
76593979 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
76594031 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACTCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
*
76594083 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
76594135 ATCA
1 ATCA
76594139 ATTTGTACCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:76597450 original size:60 final size:59
Alignment explanation
Indices: 76597373--76597504 Score: 149
Period size: 60 Copynumber: 2.2 Consensus size: 59
76597363 CAATCTCGAT
* * * * * **
76597373 TAGTTGAGTGACTAAATTTAATAAATTGATAGTTAGGTGACC-AAAAGAGAAAAGGGGTAA
1 TAGTTGGGTGACCAAATTAAAAAAATTGATAATTAGGTGACCAAAAAG-GAAAA-GGACAA
* *
76597433 TAGTTGGGTGACCAAATTAAAAAAATTGGTAATTGGGTGACCAAAAAGGAAAAGGACAA
1 TAGTTGGGTGACCAAATTAAAAAAATTGATAATTAGGTGACCAAAAAGGAAAAGGACAA
*
76597492 TAGTTGGCTGACC
1 TAGTTGGGTGACC
76597505 TGTGTTGTAG
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
59 16 0.26
60 40 0.66
61 5 0.08
ACGTcount: A:0.42, C:0.08, G:0.26, T:0.24
Consensus pattern (59 bp):
TAGTTGGGTGACCAAATTAAAAAAATTGATAATTAGGTGACCAAAAAGGAAAAGGACAA
Found at i:76601111 original size:37 final size:37
Alignment explanation
Indices: 76601061--76601135 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
76601051 CTAACTCTAT
76601061 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
76601098 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
76601135 C
1 C
76601136 TAACTCCATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.55, G:0.00, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:76601137 original size:18 final size:18
Alignment explanation
Indices: 76601077--76601149 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
76601067 ACTAAACCAT
76601077 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
76601095 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
76601114 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
76601132 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
76601150 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 24 0.56
19 7 0.16
20 4 0.09
21 2 0.05
ACGTcount: A:0.27, C:0.56, G:0.00, T:0.16
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:76601555 original size:64 final size:63
Alignment explanation
Indices: 76601431--76601551 Score: 149
Period size: 63 Copynumber: 1.9 Consensus size: 63
76601421 CCCTTTTTTA
* * *
76601431 TTTTTGTTATTTTACTGTTAAATTAGTTAATTTGAGCTTTATTCTCACTATTTTTATATTTGTT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCACTATTTTTATATTTGTT
* * *
76601495 TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATATT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCACTATTTTTATATT
76601552 ATTTATTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
61 15 0.30
62 4 0.08
63 19 0.38
64 12 0.24
ACGTcount: A:0.25, C:0.06, G:0.07, T:0.62
Consensus pattern (63 bp):
TTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCACTATTTTTATATTTGTT
Found at i:76601565 original size:11 final size:12
Alignment explanation
Indices: 76601542--76601571 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
76601532 ATGTTTCATA
76601542 TTATTATATTAT
1 TTATTATATTAT
76601554 TTATTATA-TAT
1 TTATTATATTAT
76601565 TTATTAT
1 TTATTAT
76601572 GTAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTATTATATTAT
Found at i:76602256 original size:126 final size:125
Alignment explanation
Indices: 76602032--76602274 Score: 432
Period size: 126 Copynumber: 1.9 Consensus size: 125
76602022 CATTGATCTT
76602032 CTCTCAAAATTTTTCAAAATAAAGACAATTTTGGTATTTAAAGAATTCGAAGAATCGTGCCCTAA
1 CTCTCAAAATTTTTCAAAATAAAGACAATTTTGGTATTTAAAGAATTCGAAGAATCGTGCCCTAA
* * *
76602097 CGTATTGGGTTTCGCTTTCTTTTTTTGTCTTGAATATTTGAATATCCTCTTACCAATTCA
66 CGTACTGGGTTTCGCTTTCTTTATTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
*
76602157 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTTGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTCAAAATTTTTCAAAATAAAGACAAT-TTTGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
76602222 ACGTACTGGGTTTCGCTTTCTTTATTTGTTTTGAATATTCGAATATCCTCTTA
65 ACGTACTGGGTTTCGCTTTCTTTATTTGTCTTGAATATTCGAATATCCTCTTA
76602275 AGGCTAAAAC
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 28 0.25
126 84 0.75
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (125 bp):
CTCTCAAAATTTTTCAAAATAAAGACAATTTTGGTATTTAAAGAATTCGAAGAATCGTGCCCTAA
CGTACTGGGTTTCGCTTTCTTTATTTGTCTTGAATATTCGAATATCCTCTTACCAATTCA
Found at i:76604130 original size:46 final size:45
Alignment explanation
Indices: 76604077--76604249 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 45
76604067 TTGGGCATCT
76604077 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
*** * * *
76604123 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCC
* * * *
76604170 GAGCTCGTTGAGTTGAGTCTGAGTTAACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
* *
76604216 GAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76604250 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 62 0.61
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCC
Found at i:76604230 original size:93 final size:93
Alignment explanation
Indices: 76604070--76604241 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
76604060 AGGATATTTG
* * * *
76604070 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGCCCGAACTCGTTAAG
76604135 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
76604163 GGCATCTGAGCTCGTTGAGTTGAGTCTGAGTTAACTTATGGATGCGAACGCCCGAGCTCGTTAAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGCCCGAACTCGTTAAG
76604228 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76604242 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGCCCGAACTCGTTAAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76606975 original size:21 final size:21
Alignment explanation
Indices: 76606931--76606975 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
76606921 AAGGGATCAG
* *
76606931 ATGCTGGAATCCCAGAGAAGC
1 ATGCTAGAATCCCAGAGAAAC
76606952 ATGCTAGAATCCCAGA-ACAAC
1 ATGCTAGAATCCCAGAGA-AAC
76606973 ATG
1 ATG
76606976 ATAAGCCAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (21 bp):
ATGCTAGAATCCCAGAGAAAC
Found at i:76614915 original size:133 final size:133
Alignment explanation
Indices: 76614664--76615095 Score: 598
Period size: 133 Copynumber: 3.2 Consensus size: 133
76614654 TGGATTCCCC
** * * * *
76614664 AGTGGA-CAGGCTAAATACTAGATCTTATCTTAACTGAACATGAGTGAAGCAGATCGAATTTTGG
1 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCGAAGCAGATCAAATTTTGG
* * * * * * **
76614728 AGAATCTTATCTCTACGTACCAGCGATGGAGCAGATTCCAATCATCAGATTTATCTTCACTGAGC
66 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
76614793 AGG
131 AGG
* *
76614796 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCGGAGTAGATCAAATTTTGG
1 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCGAAGCAGATCAAATTTTGG
* **
76614861 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA-CTAGCCTTATCTTCACTGAG
66 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATC-AGCCTTATCTTCACTGAG
76614925 CAGG
130 CAGG
* * * * *
76614929 AGTGGAGCAGGCTATATATTAGATCTTATCTTCGCTGAGTAGGAGCAAAGCAGATCAAATTTTGA
1 AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCGAAGCAGATCAAATTTTGG
76614994 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
66 TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
76615059 AGG
131 AGG
*
76615062 AGTGGAGCAGGCTAAACATACCAGATCTTATCTT
1 AGTGGAGCAGGCT-AA-ATACTAGATCTTATCTT
76615096 TACTGAGTAA
Statistics
Matches: 263, Mismatches: 32, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
132 7 0.03
133 239 0.91
134 2 0.01
135 15 0.06
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (133 bp):
AGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGCAGGAGCGAAGCAGATCAAATTTTGG
TGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGC
AGG
Found at i:76615405 original size:18 final size:18
Alignment explanation
Indices: 76615382--76615417 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
76615372 ACTAAACCAT
*
76615382 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
76615400 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
76615418 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:76615831 original size:11 final size:11
Alignment explanation
Indices: 76615811--76615844 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
76615801 ATGTTTCATA
76615811 TTATTATATTAT
1 TTATT-TATTAT
76615823 TTATTTATTAT
1 TTATTTATTAT
*
76615834 ATATTTATTAT
1 TTATTTATTAT
76615845 GTAAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTTATTAT
Found at i:76615832 original size:16 final size:15
Alignment explanation
Indices: 76615811--76615842 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
76615801 ATGTTTCATA
76615811 TTATTATATTATTTAT
1 TTATTATA-TATTTAT
76615827 TTATTATATATTTAT
1 TTATTATATATTTAT
76615842 T
1 T
76615843 ATGTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTATATATTTAT
Found at i:76615839 original size:64 final size:63
Alignment explanation
Indices: 76615700--76615833 Score: 150
Period size: 63 Copynumber: 2.2 Consensus size: 63
76615690 CCCTTTTTTA
* * * *
76615700 TTTTTGTTATTTTACTGTTAAATTAGTTAATTTGAGCTTTATTCTCATTATTTTTATATTTGTT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTATTATATTTGTT
* * *
76615764 TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA-TTATT
1 TTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTATTATATTTGTT
*
76615824 TATTTATTAT
1 TTTTTATTAT
76615834 ATATTTATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
60 13 0.21
61 13 0.21
62 4 0.07
63 19 0.31
64 12 0.20
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.63
Consensus pattern (63 bp):
TTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTATTATATTTGTT
Found at i:76616539 original size:126 final size:126
Alignment explanation
Indices: 76616303--76616546 Score: 425
Period size: 126 Copynumber: 1.9 Consensus size: 126
76616293 CATTGATCTT
* * * *
76616303 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTAGTTAAAGAATTCGAAGAATCGTACCCTA
*
76616368 ACGTACTGGGTTTCGCTTTCTTTGTTTGTATTGAATATTTAAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTATTGAATATTCAAATATCCTCTTACCAGTTCA
76616429 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTAGTTAAAGAATTCGAAGAATCGTACCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTAGTTAAAGAATTCGAAGAATCGTACCCTA
* *
76616494 ACGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTATTGAATATTCAAATATCCTCTTA
76616547 AGGTTAAAAC
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 111 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTAGTTAAAGAATTCGAAGAATCGTACCCTA
ACGTACTGGGTTTCGCTTTCTTTGTTTGTATTGAATATTCAAATATCCTCTTACCAGTTCA
Found at i:76619858 original size:62 final size:61
Alignment explanation
Indices: 76619775--76619907 Score: 155
Period size: 62 Copynumber: 2.2 Consensus size: 61
76619765 GTAGTCACTC
* * ** * *
76619775 TTCTTTTTTGGCCA-TCCAACTATGAAAAGTT-TCAAAATGGTCACTCAATTATGT-TTTTATT
1 TTCTTTTTTGGTCACT-AAACTATGAAAAGTTAT-AAAATAATCACTCAACTATATATTTT-TT
76619836 TTCCTTTTTTGGTCACTAAACTATGAAAAGTTATAAAATAATCACTCAACTATATATTTTTT
1 TT-CTTTTTTGGTCACTAAACTATGAAAAGTTATAAAATAATCACTCAACTATATATTTTTT
76619898 TTCTTTTTTG
1 TTCTTTTTTG
76619908 ATCATGAGTG
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
61 10 0.16
62 46 0.74
63 6 0.10
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (61 bp):
TTCTTTTTTGGTCACTAAACTATGAAAAGTTATAAAATAATCACTCAACTATATATTTTTT
Found at i:76632606 original size:17 final size:17
Alignment explanation
Indices: 76632581--76632613 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76632571 AACATGTATT
76632581 TGTGATTGTATTATACC
1 TGTGATTGTATTATACC
*
76632598 TGTGGTTGTATTATAC
1 TGTGATTGTATTATAC
76632614 TTGTACTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.21, T:0.48
Consensus pattern (17 bp):
TGTGATTGTATTATACC
Found at i:76641617 original size:31 final size:31
Alignment explanation
Indices: 76641582--76641641 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
76641572 GTCATTGAAG
*
76641582 TATTCGAAAA-CTTTCATTTAAGTCACCAAAC
1 TATTC-AAAAGCTTTCATGTAAGTCACCAAAC
* *
76641613 TATTCAAAAGTTTTTATGTAAGTCACCAA
1 TATTCAAAAGCTTTCATGTAAGTCACCAA
76641642 GTTGTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (31 bp):
TATTCAAAAGCTTTCATGTAAGTCACCAAAC
Found at i:76656228 original size:139 final size:139
Alignment explanation
Indices: 76655978--76656251 Score: 469
Period size: 139 Copynumber: 2.0 Consensus size: 139
76655968 AGCCAAACTC
* *
76655978 ATTTTCAGAATAGTCAAGGACTCAATGTTACTATTTGATACCAATAATCCTAGACTTAAAATGAA
1 ATTTTCAGAATAGTCAAGGACTAAATGTTACTAGTTGATACCAATAATCCTAGACTTAAAATGAA
* *
76656043 AAAATAAAAAAGAAGCAAAAGTGATGACTGTTCAGAGTTCCTTCTCACTCGTCAGAAACCCAGAA
66 AAAATAAAAAAGAAGCAAAAGTGATGACTATTCAGAGTTCCTTCTCAATCGTCAGAAACCCAGAA
76656108 CCAGCACTA
131 CCAGCACTA
*
76656117 ATTTTCAGAATAGTCAAGGACTAAATGTTAGTAGTTGATACCAATAATCCTAGACTTTAAAATGA
1 ATTTTCAGAATAGTCAAGGACTAAATGTTACTAGTTGATACCAATAATCCTAGAC-TTAAAATGA
* *
76656182 AAAAA-AAGAAAGAAGCAAAAGTGATGACTATTCAGAGTTCTTTCTCAATCGTCAGAAACCCAGA
65 AAAAATAAAAAAGAAGCAAAAGTGATGACTATTCAGAGTTCCTTCTCAATCGTCAGAAACCCAGA
76656246 ACCAGC
130 ACCAGC
76656252 TCAACAGGCT
Statistics
Matches: 127, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
139 113 0.89
140 14 0.11
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (139 bp):
ATTTTCAGAATAGTCAAGGACTAAATGTTACTAGTTGATACCAATAATCCTAGACTTAAAATGAA
AAAATAAAAAAGAAGCAAAAGTGATGACTATTCAGAGTTCCTTCTCAATCGTCAGAAACCCAGAA
CCAGCACTA
Found at i:76656813 original size:36 final size:36
Alignment explanation
Indices: 76656766--76656837 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
76656756 AGTCGAGTAT
76656766 GACTAAACTTGAATTTGGCTCAATTAATAGCTCGAC
1 GACTAAACTTGAATTTGGCTCAATTAATAGCTCGAC
76656802 GACTAAACTTGAATTTGGCTCAATTAATAGCTCGAC
1 GACTAAACTTGAATTTGGCTCAATTAATAGCTCGAC
76656838 CTTGACTCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (36 bp):
GACTAAACTTGAATTTGGCTCAATTAATAGCTCGAC
Found at i:76659553 original size:18 final size:18
Alignment explanation
Indices: 76659530--76659564 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76659520 GAAACTTGTC
* *
76659530 CAACAGGGTTAGAGTTTT
1 CAACAGAGTCAGAGTTTT
76659548 CAACAGAGTCAGAGTTT
1 CAACAGAGTCAGAGTTT
76659565 CGAATGGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (18 bp):
CAACAGAGTCAGAGTTTT
Found at i:76665960 original size:34 final size:34
Alignment explanation
Indices: 76665917--76666017 Score: 82
Period size: 33 Copynumber: 2.9 Consensus size: 34
76665907 ATATATTAAT
*
76665917 TAAAATTTTATTAATCAATATAATATATAAAAAA
1 TAAATTTTTATTAATCAATATAATATATAAAAAA
* * **
76665951 TAAATTTTTA-TAA--AATTTAAAAATATATAATTA
1 TAAATTTTTATTAATCAATAT-AATATATA-AAAAA
* *
76665984 TAAATTTTTATAAAATTCAAAATAATATATAAAA
1 TAAATTTTTAT-TAA-TCAATATAATATATAAAA
76666018 TTGAAAATTA
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
31 4 0.08
32 7 0.14
33 16 0.32
34 9 0.18
35 2 0.04
36 2 0.04
37 7 0.14
38 3 0.06
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (34 bp):
TAAATTTTTATTAATCAATATAATATATAAAAAA
Found at i:76665962 original size:24 final size:26
Alignment explanation
Indices: 76665935--76665982 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
76665925 TATTAATCAA
*
76665935 TATAATATATAAAAA-ATA-AATTTT
1 TATAAAATATAAAAATATATAATTTT
*
76665959 TATAAAATTTAAAAATATATAATT
1 TATAAAATATAAAAATATATAATT
76665983 ATAAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 3 0.15
26 4 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TATAAAATATAAAAATATATAATTTT
Found at i:76666017 original size:69 final size:65
Alignment explanation
Indices: 76665907--76666047 Score: 160
Period size: 69 Copynumber: 2.1 Consensus size: 65
76665897 TTTTAATATT
* * * *
76665907 ATATATTAATTAAAATTTTATTAATCAATATAATATATAAAAA-ATAAATTTTTATAAAATTTAA
1 ATATA-TAATTAAAATTTTATAAATCAAAATAATATATAAAAATA-AAATTATTATAAAAGTTAA
76665971 AA
64 AA
*
76665973 ATATATAATTATAAATTTTTATAAAATTCAAAATAATATATAAAATTGAAAATTATTATAAAAGT
1 ATATATAATTA-AAA-TTTTAT-AAA-TCAAAATAATATATAAAAAT-AAAATTATTATAAAAGT
76666038 TAAAA
61 TAAAA
76666043 A-ATAT
1 ATATAT
76666048 TTAAATTTCA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
65 6 0.09
66 8 0.12
67 6 0.09
68 2 0.03
69 21 0.33
70 20 0.31
71 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (65 bp):
ATATATAATTAAAATTTTATAAATCAAAATAATATATAAAAATAAAATTATTATAAAAGTTAAAA
Found at i:76666026 original size:37 final size:35
Alignment explanation
Indices: 76665938--76666052 Score: 130
Period size: 37 Copynumber: 3.3 Consensus size: 35
76665928 TAATCAATAT
* *
76665938 AATATATAAAA-AATAAATTTTTATAAAATTTAAA
1 AATATATAAAATTATAAATTTTTATAAAATTAAAA
76665972 AATATAT--AATTATAAATTTTTATAAAATTCAAAA
1 AATATATAAAATTATAAATTTTTATAAAATT-AAAA
*
76666006 TAATATATAAAATTGA-AAATTATTATAAAAGTTAAAA
1 -AATATATAAAATT-ATAAATTTTTATAAAA-TTAAAA
*
76666043 AATATTTAAA
1 AATATATAAA
76666053 TTTCAAGTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
32 2 0.03
33 18 0.26
34 10 0.14
35 7 0.10
36 9 0.13
37 21 0.30
38 3 0.04
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (35 bp):
AATATATAAAATTATAAATTTTTATAAAATTAAAA
Found at i:76666048 original size:19 final size:18
Alignment explanation
Indices: 76665958--76666052 Score: 74
Period size: 19 Copynumber: 5.4 Consensus size: 18
76665948 AAATAAATTT
*
76665958 TTATAAAATTTAAAAATA
1 TTATAAAATTAAAAAATA
* * *
76665976 -TAT--AATTATAAATTT
1 TTATAAAATTAAAAAATA
76665991 TTATAAAATTCAAAATAATA
1 TTATAAAATT-AAAA-AATA
* *
76666011 -TATAAAATTGAAAATTA
1 TTATAAAATTAAAAAATA
76666028 TTATAAAAGTTAAAAAATA
1 TTATAAAA-TTAAAAAATA
76666047 TT-TAAA
1 TTATAAA
76666053 TTTCAAGTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
15 8 0.14
16 3 0.05
17 6 0.10
18 18 0.31
19 22 0.37
20 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (18 bp):
TTATAAAATTAAAAAATA
Found at i:76666128 original size:24 final size:23
Alignment explanation
Indices: 76666086--76666153 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
76666076 CTTGAAATTT
* *
76666086 AAATACTTTTTAGAA-TTTTATAA
1 AAATATTTTTTACAACTTTT-TAA
*
76666109 AAATTTGTTTTTA-AACTTTTTAA
1 AAATAT-TTTTTACAACTTTTTAA
76666132 AAATATTTTTTACAACTTTTTA
1 AAATATTTTTTACAACTTTTTA
76666154 CATTTTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
22 6 0.15
23 23 0.59
24 10 0.26
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (23 bp):
AAATATTTTTTACAACTTTTTAA
Found at i:76666270 original size:23 final size:22
Alignment explanation
Indices: 76666231--76666293 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 22
76666221 TTCTTGTATG
*
76666231 ATTTGTATATTTTTTATAGATTAT
1 ATTTCTAT-TTTTTTATAGATT-T
* *
76666255 ATTTTTATTTTTTTATATATTT
1 ATTTCTATTTTTTTATAGATTT
76666277 ATTTCTATTTTTATTAT
1 ATTTCTATTTTT-TTAT
76666294 TTAAAATGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.34
23 16 0.46
24 7 0.20
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (22 bp):
ATTTCTATTTTTTTATAGATTT
Found at i:76666609 original size:29 final size:30
Alignment explanation
Indices: 76666560--76666618 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
76666550 GAATTTGATC
*
76666560 AAATCAAAATTTCATGTATAAAATTATACA
1 AAATCAAAATTTCATATATAAAATTATACA
* *
76666590 AAATCAAAA-TTCTTATATAAAATTGTACA
1 AAATCAAAATTTCATATATAAAATTATACA
76666619 TTAAACTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (30 bp):
AAATCAAAATTTCATATATAAAATTATACA
Found at i:76669357 original size:45 final size:45
Alignment explanation
Indices: 76669306--76669398 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
76669296 GACGATAGGG
*
76669306 GTTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTTAGTT
1 GTTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTTAATT
*
76669351 GTTTTAATTAGAAAGATATTTCAATTAATCAACCTAGAGTTAATT
1 GTTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTTAATT
76669396 GTT
1 GTT
76669399 CTTACTCTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.40
Consensus pattern (45 bp):
GTTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTTAATT
Found at i:76672235 original size:15 final size:13
Alignment explanation
Indices: 76672217--76672265 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
76672207 ATTTACCCTA
76672217 AAACCTTGGACCTT
1 AAACCTT-GACCTT
*
76672231 AAAACTTTAGACCTT
1 -AAACCTT-GACCTT
*
76672246 AAACCTTGACCCT
1 AAACCTTGACCTT
76672259 AAACCTT
1 AAACCTT
76672266 AGGTCTAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 12 0.40
14 6 0.20
15 12 0.40
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.29
Consensus pattern (13 bp):
AAACCTTGACCTT
Found at i:76678686 original size:25 final size:24
Alignment explanation
Indices: 76678637--76678686 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
76678627 TGAATATGTG
*
76678637 GTATGAAATTTGTATGTATGAAAT
1 GTATGAAATTTGTATGGATGAAAT
*
76678661 GTATGAAAATTT-TAATGGATGGAAT
1 GTATG-AAATTTGT-ATGGATGAAAT
76678686 G
1 G
76678687 GTATATGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (24 bp):
GTATGAAATTTGTATGGATGAAAT
Found at i:76680166 original size:21 final size:22
Alignment explanation
Indices: 76680142--76680195 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
76680132 TGGCCTGCAG
*
76680142 CACGAGCGTGT-CCTAGGACCA
1 CACGAGCATGTCCCTAGGACCA
*
76680163 CACGAGCATGTCCCTTGGACCA
1 CACGAGCATGTCCCTAGGACCA
76680185 CAC-AGGCATGT
1 CACGA-GCATGT
76680196 GAACCTTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (22 bp):
CACGAGCATGTCCCTAGGACCA
Found at i:76681685 original size:24 final size:25
Alignment explanation
Indices: 76681638--76681685 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
76681628 TTCTTATTAT
* **
76681638 ATCAATATCCATTTTCATGCATTTC
1 ATCAATAACCATTTTCATAAATTTC
76681663 ATCAATAACCA-TTTCATAAATTT
1 ATCAATAACCATTTTCATAAATTT
76681686 TATATCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.42
Consensus pattern (25 bp):
ATCAATAACCATTTTCATAAATTTC
Found at i:76683623 original size:3 final size:3
Alignment explanation
Indices: 76683608--76683659 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
76683598 ATATATTAGT
* *
76683608 TAA TAA TAT TAA TAA TAA TAA TACA TTA TAA TAA TAA T-A TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
76683652 TAA TAA TA
1 TAA TAA TA
76683660 TTTAATTCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 36 0.86
4 2 0.05
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:76683640 original size:13 final size:13
Alignment explanation
Indices: 76683610--76683665 Score: 62
Period size: 13 Copynumber: 4.4 Consensus size: 13
76683600 ATATTAGTTA
*
76683610 ATAATATTAATA-
1 ATAATAATAATAT
76683622 ATAATAATACAT-T
1 ATAATAATA-ATAT
76683635 ATAATAATAATAT
1 ATAATAATAATAT
*
76683648 AAAATAATAATAT
1 ATAATAATAATAT
*
76683661 TTAAT
1 ATAAT
76683666 TCATAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 10 0.27
13 27 0.73
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:76684159 original size:12 final size:12
Alignment explanation
Indices: 76684101--76684163 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
76684091 ATTTTATTTC
76684101 ATAA-TATAATA
1 ATAATTATAATA
76684112 AT-ATTAATAATA
1 ATAATT-ATAATA
*
76684124 ATATTTA-AATAA
1 ATAATTATAAT-A
* **
76684136 AAAACCATAATA
1 ATAATTATAATA
76684148 ATAATTATAATA
1 ATAATTATAATA
76684160 ATAA
1 ATAA
76684164 ATTGATAACA
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
10 1 0.03
11 6 0.15
12 27 0.69
13 5 0.13
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATTATAATA
Found at i:76685032 original size:71 final size:71
Alignment explanation
Indices: 76684916--76685058 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
76684906 AAAATTTGGA
*
76684916 CAAACTTATTAGAAACAAACAATCTAAAATATTTGCTTTCTAAAATAATTTAATTTCATCATGTA
1 CAAACCTATTAGAAACAAACAATCTAAAATATTTGCTTTCTAAAATAATTTAATTTCATCATGTA
76684981 ATCGTG
66 ATCGTG
76684987 CAAACCTATTAGAAACAAACAATCTAAAATATTTGCTTTCTAAAATAATTTAATTTCATCATGTA
1 CAAACCTATTAGAAACAAACAATCTAAAATATTTGCTTTCTAAAATAATTTAATTTCATCATGTA
76685052 ATCGTG
66 ATCGTG
76685058 C
1 C
76685059 TAACTTAGTT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (71 bp):
CAAACCTATTAGAAACAAACAATCTAAAATATTTGCTTTCTAAAATAATTTAATTTCATCATGTA
ATCGTG
Found at i:76693029 original size:29 final size:30
Alignment explanation
Indices: 76692982--76693049 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
76692972 TGGCCCAAGA
* *
76692982 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
76693012 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
76693042 GAAAATAT
1 GTAAATAT
76693050 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:76696707 original size:32 final size:32
Alignment explanation
Indices: 76696662--76696723 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
76696652 AAATAATAAA
76696662 AATGTGTTAATATTTAATCTAATTACAAATATTT
1 AATGTGTTAATATTTAAT-TAATTA-AAATATTT
*
76696696 AATG-GTT-ATATTTAATTATTTAAAATAT
1 AATGTGTTAATATTTAATTAATTAAAATAT
76696724 AGTTTATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 6 0.22
31 5 0.19
32 9 0.33
33 3 0.11
34 4 0.15
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (32 bp):
AATGTGTTAATATTTAATTAATTAAAATATTT
Found at i:76696794 original size:30 final size:30
Alignment explanation
Indices: 76696755--76696811 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
76696745 TTTTATAAAT
76696755 AATTAATATTT-AT-TACTTAAAGATATTTAA
1 AATTAATATTTCATATA-TTAAA-ATATTTAA
*
76696785 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
76696812 AATAACAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 15 0.62
31 7 0.29
32 2 0.08
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:76697069 original size:27 final size:23
Alignment explanation
Indices: 76697025--76697073 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
76697015 ACTTTTTTTT
76697025 TAAACTAATTTAAAAAAAAATAC
1 TAAACTAATTTAAAAAAAAATAC
76697048 TAAACTAACTCTTAATATAAAAAATA
1 TAAACTAA-T-TTAA-A-AAAAAATA
76697074 AAAAATAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.36
24 1 0.05
25 4 0.18
26 1 0.05
27 8 0.36
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAACTAATTTAAAAAAAAATAC
Found at i:76697645 original size:55 final size:58
Alignment explanation
Indices: 76697565--76697697 Score: 146
Period size: 61 Copynumber: 2.3 Consensus size: 58
76697555 CTTTTGTATG
* * * *
76697565 TTTAAATCGATTGTCATGTTAGAATA-C-TAT-TTCTTTTGAATCGTTTGTTTATATA
1 TTTAAATCGATTGTTATGGTAGAATACCTTATCTTCTTTTGAATCGATTATTTATATA
* * *
76697620 TTTAAATCGATTGTTATGGTGGAATACTGCCTTTTCTTCTTTTGAATCGATTATTTATATG
1 TTTAAATCGATTGTTATGGTAGAATA---CCTTATCTTCTTTTGAATCGATTATTTATATA
*
76697681 TTTAAATCAATTGTTAT
1 TTTAAATCGATTGTTAT
76697698 ATTGCAATAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
55 23 0.36
59 1 0.02
60 2 0.03
61 38 0.59
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (58 bp):
TTTAAATCGATTGTTATGGTAGAATACCTTATCTTCTTTTGAATCGATTATTTATATA
Found at i:76697955 original size:15 final size:16
Alignment explanation
Indices: 76697935--76697964 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76697925 ACGTTTACAT
76697935 ATTTTTA-TCATTTTG
1 ATTTTTATTCATTTTG
76697950 ATTTTTATTCATTTT
1 ATTTTTATTCATTTT
76697965 TTGTGCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (16 bp):
ATTTTTATTCATTTTG
Found at i:76701312 original size:96 final size:96
Alignment explanation
Indices: 76701152--76701344 Score: 368
Period size: 96 Copynumber: 2.0 Consensus size: 96
76701142 TCTTTTAAAA
* *
76701152 TATTTACAATAACAATAGTATCAATCATGATACGATTTAATAGAGGTTAAAGTAATTTGGAGGCC
1 TATTTACAATAACAATAGTATCAATCATGATACGATTTAATAGAGGTAAAAGTAATTTGAAGGCC
76701217 TCTGTATTAAGAGTTGGATTGCATTTTACCT
66 TCTGTATTAAGAGTTGGATTGCATTTTACCT
76701248 TATTTACAATAACAATAGTATCAATCATGATACGATTTAATAGAGGTAAAAGTAATTTGAAGGCC
1 TATTTACAATAACAATAGTATCAATCATGATACGATTTAATAGAGGTAAAAGTAATTTGAAGGCC
76701313 TCTGTATTAAGAGTTGGATTGCATTTTACCT
66 TCTGTATTAAGAGTTGGATTGCATTTTACCT
76701344 T
1 T
76701345 CTCTATTAAA
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (96 bp):
TATTTACAATAACAATAGTATCAATCATGATACGATTTAATAGAGGTAAAAGTAATTTGAAGGCC
TCTGTATTAAGAGTTGGATTGCATTTTACCT
Found at i:76703584 original size:14 final size:14
Alignment explanation
Indices: 76703545--76703590 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
76703535 TTGTCAAAAT
* *
76703545 AAATCTAAAAATTTA
1 AAATC-AAAAAATAA
76703560 AAATCAAAAAATAA
1 AAATCAAAAAATAA
*
76703574 AAATGAAAAAATAA
1 AAATCAAAAAATAA
76703588 AAA
1 AAA
76703591 ACTGAACCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 23 0.82
15 5 0.18
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (14 bp):
AAATCAAAAAATAA
Found at i:76711698 original size:17 final size:16
Alignment explanation
Indices: 76711678--76711711 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76711668 AAATATCCTC
76711678 ATTTGATAAATAAAAAT
1 ATTTGA-AAATAAAAAT
*
76711695 ATTTTAAAATAAAAAT
1 ATTTGAAAATAAAAAT
76711711 A
1 A
76711712 GAGTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
ATTTGAAAATAAAAAT
Found at i:76711841 original size:23 final size:24
Alignment explanation
Indices: 76711810--76711859 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
76711800 TATTCATTTT
*
76711810 TTTATAAATCTATTATA-ATTAATA
1 TTTATAAATATA-TATAGATTAATA
76711834 TTTA-AAATATATATAGATTAATA
1 TTTATAAATATATATAGATTAATA
76711857 TTT
1 TTT
76711860 GAAACTGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 16 0.67
24 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTATAAATATATATAGATTAATA
Found at i:76724100 original size:81 final size:80
Alignment explanation
Indices: 76723981--76724439 Score: 742
Period size: 81 Copynumber: 5.7 Consensus size: 80
76723971 CTCCCAAAGC
*
76723981 TGAGATGTGTTTTAATTTTATTTTTTAAATTTTTAAATATTAATTAGAATATTTGTCAGGTTTTA
1 TGAGATGTGTTTTAATTTTATTTTTT-ATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTA
76724046 AATTCCTCGAAAAAAA
65 AATTCCTCGAAAAAAA
*
76724062 TGAGATGTGTTTTAATTTTAATTTTTTATTTTTTAAATATTAATTATAATATTTGTCAGGTTTTA
1 TGAGATGTGTTTTAATTTT-ATTTTTTATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTA
76724127 AATTCCTCGAAAAAAA
65 AATTCCTCGAAAAAAA
*
76724143 TGAGATGTGTTTTAATTTTAATTTTTTATTTTTTAAATATTAATTATAATATTTGTCAGGTTTTA
1 TGAGATGTGTTTTAATTTT-ATTTTTTATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTA
76724208 AATTCCTCGAAAAAAA
65 AATTCCTCGAAAAAAA
76724224 TGAGATGTGTTTTAATTTTATTTTTATATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTA
1 TGAGATGTGTTTTAATTTTATTTTT-TATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTA
*
76724289 AATTCCTTGAAAAAAA
65 AATTCCTCGAAAAAAA
* * *
76724305 TGAGATGTGCTTTAATTTT-TTTTTAATTTTTTAAATATTAATTAGAATATTTGTCGGGTTTTAA
1 TGAGATGTGTTTTAATTTTATTTTTTATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTAA
* *
76724369 ATTCCTCCAAGAAAA
66 ATTCCTCGAAAAAAA
** *
76724384 TGAGATGTG-TTTAATTTTATTTTTTAAAAATTTTAAACATTAATTAGAATATTTGT
1 TGAGATGTGTTTTAATTTTATTTTTT--ATTTTTTAAATATTAATTAGAATATTTGT
76724440 TCCGTTTAAA
Statistics
Matches: 359, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
78 9 0.03
79 64 0.18
80 11 0.03
81 268 0.75
82 7 0.02
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (80 bp):
TGAGATGTGTTTTAATTTTATTTTTTATTTTTTAAATATTAATTAGAATATTTGTCAGGTTTTAA
ATTCCTCGAAAAAAA
Found at i:76725283 original size:9 final size:9
Alignment explanation
Indices: 76725265--76725300 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
76725255 CACAAATATT
76725265 TTTTTTTAA
1 TTTTTTTAA
*
76725274 TTTTTATAA
1 TTTTTTTAA
76725283 TTTTTTTAA
1 TTTTTTTAA
76725292 TATTTTTTA
1 T-TTTTTTA
76725301 TAAAGTACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:76725287 original size:21 final size:21
Alignment explanation
Indices: 76725262--76725303 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
76725252 TAACACAAAT
*
76725262 ATTTTTTT-TTAATTTTTATA
1 ATTTTTTTAATAATTTTTATA
*
76725282 ATTTTTTTAATATTTTTTATA
1 ATTTTTTTAATAATTTTTATA
76725303 A
1 A
76725304 AGTACATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTTTTAATAATTTTTATA
Found at i:76731676 original size:29 final size:29
Alignment explanation
Indices: 76731642--76731698 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
76731632 ACGTTTACTG
*
76731642 TTCAAAATAGG-TCATTTACATATATAATT
1 TTCAAAAT-GGATCATTTACATAAATAATT
* *
76731671 TTCAAAGTGGATCATTTTCATAAATAAT
1 TTCAAAATGGATCATTTACATAAATAAT
76731699 GTAAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (29 bp):
TTCAAAATGGATCATTTACATAAATAATT
Found at i:76733630 original size:12 final size:12
Alignment explanation
Indices: 76733613--76733637 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76733603 ATATTGTGTT
76733613 TGTATATATATA
1 TGTATATATATA
76733625 TGTATATATATA
1 TGTATATATATA
76733637 T
1 T
76733638 TGTTTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTATATATATA
Found at i:76749731 original size:184 final size:188
Alignment explanation
Indices: 76749427--76749791 Score: 438
Period size: 186 Copynumber: 2.0 Consensus size: 188
76749417 ACACGAAAAT
* * ** *
76749427 GGAAAATTATTGACCTAATAAGATGTTATCGATTTAATTCTTTGCCCAACCGAGATCAGTTTGGG
1 GGAAAATTAATGACCTAATAAAATGTTATCGATCGAATTCTCTGCCCAACCGAGATCAGTTTGGG
*
76749492 TTATAAAATCCAATATCAGTGTTGAGTACATACTCATTTATCCCTTCATAATAATTAATCCTTTC
66 TTATAAAATCCAATATCAGTGTTGAGTACATACTCATTTAGCCCTTCATAATAATTAATCCTTTC
*
76749557 AGAAG-TCA-CAAT-TATTATATACAATTATATTATTTTTAAAATTTAAACTGATAAAC
131 AG-AGTTCATCAATATATTATATACAATTATATTATTTCTAAAATTTAAACTGATAAAC
** **
76749613 GGAAAATTAATGAGTTAATAAAATGTTATCGATCGAA-TCTCTGCCCAATTGAGAT-AGGTTTGG
1 GGAAAATTAATGACCTAATAAAATGTTATCGATCGAATTCTCTGCCCAACCGAGATCA-GTTTGG
* * * * * * * *
76749676 G-TATAAAATCCAATATTAGTTTTGGGTACGTGC-CTGTTTAGCCTTTCATAATAATTAATTCTT
65 GTTATAAAATCCAATATCAGTGTTGAGTACATACTC-ATTTAGCCCTTCATAATAATTAATCCTT
* * * * *
76749739 TTAGAGTTCATGATTATATTATATATACTTATATTATTTCTAAAATTTAAACT
129 TCAGAGTTCATCAATATATTATATACAATTATATTATTTCTAAAATTTAAACT
76749792 TGAATCTGTT
Statistics
Matches: 150, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
183 3 0.02
184 58 0.39
185 24 0.16
186 65 0.43
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (188 bp):
GGAAAATTAATGACCTAATAAAATGTTATCGATCGAATTCTCTGCCCAACCGAGATCAGTTTGGG
TTATAAAATCCAATATCAGTGTTGAGTACATACTCATTTAGCCCTTCATAATAATTAATCCTTTC
AGAGTTCATCAATATATTATATACAATTATATTATTTCTAAAATTTAAACTGATAAAC
Found at i:76750243 original size:20 final size:19
Alignment explanation
Indices: 76750218--76750262 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
76750208 GTACAATAAT
76750218 TTTTATAATTATTTTACGAA
1 TTTTATAATTATTTTA-GAA
* * *
76750238 TTTTATATTTTTTTTATAA
1 TTTTATAATTATTTTAGAA
76750257 TTTTAT
1 TTTTAT
76750263 TATGACTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTATAATTATTTTAGAA
Found at i:76750328 original size:28 final size:30
Alignment explanation
Indices: 76750275--76750349 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 30
76750265 TGACTTTATA
* * *
76750275 AAATTTTATATTTTTTCTGTATTTC-TA-T
1 AAATTTTATATTTTTTTTCTAATTCTTAGT
*
76750303 ATATTTTATATTTTTTTTCTAATTCTTAGT
1 AAATTTTATATTTTTTTTCTAATTCTTAGT
76750333 AAATTTTA-ATTTTTTTT
1 AAATTTTATATTTTTTTT
76750350 ATATTTTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
28 21 0.52
29 11 0.28
30 8 0.20
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (30 bp):
AAATTTTATATTTTTTTTCTAATTCTTAGT
Found at i:76751935 original size:23 final size:23
Alignment explanation
Indices: 76751890--76751949 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 23
76751880 AAAATCAAAA
76751890 AATATATTTTAT-ATT-AATATT
1 AATATATTTTATAATTAAATATT
76751911 AATATATTTTTATAATTAAAT-TT
1 AATATA-TTTTATAATTAAATATT
76751934 AA-ATAATTTT-TAATTA
1 AATAT-ATTTTATAATTA
76751950 TTTAATTTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 12 0.34
22 12 0.34
23 8 0.23
24 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
AATATATTTTATAATTAAATATT
Found at i:76751956 original size:24 final size:23
Alignment explanation
Indices: 76751890--76751957 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 23
76751880 AAAATCAAAA
76751890 AATATA-TTTTA-TA-TTAATATT
1 AATATATTTTTATTATTTAAT-TT
* *
76751911 AATATATTTTTATAATTAAATTT
1 AATATATTTTTATTATTTAATTT
76751934 AA-ATAATTTTTAATTATTTAATTT
1 AATAT-ATTTTT-ATTATTTAATTT
76751958 GAATTGAAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
21 6 0.16
22 7 0.18
23 11 0.29
24 14 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
AATATATTTTTATTATTTAATTT
Found at i:76752604 original size:14 final size:16
Alignment explanation
Indices: 76752579--76752614 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
76752569 TTTAATTTTC
76752579 AAAATTTCAAAAAA-A
1 AAAATTTCAAAAAATA
76752594 AAAATTT-AAAAAATA
1 AAAATTTCAAAAAATA
76752609 AAAATT
1 AAAATT
76752615 GCATTTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAATTTCAAAAAATA
Found at i:76752671 original size:29 final size:30
Alignment explanation
Indices: 76752610--76752710 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
76752600 TAAAAAATAA
*
76752610 AAATTGCATTTTGACCCCTAAACTTT-TCTT
1 AAATTTCATTTTGACCCCTAAACTTTCT-TT
*
76752640 AAATTTCATTTTGACCCTTAAA-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCTTT
* * *
76752669 AAATTTCAATTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCTTT
76752699 AAATTTCATTTT
1 AAATTTCATTTT
76752711 AATCCTAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 24 0.39
30 37 0.61
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.46
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCTTT
Found at i:76752718 original size:29 final size:28
Alignment explanation
Indices: 76752610--76752725 Score: 101
Period size: 30 Copynumber: 4.0 Consensus size: 28
76752600 TAAAAAATAA
* *
76752610 AAATTGCATTTTGACCCCTAAACTTTTCTT
1 AAATTTCATTTT-AACCCTAAAC-TTTCTT
*
76752640 AAATTTCATTTTGACCCTTAAA-TTTCTTT
1 AAATTTCATTTTAACCC-TAAACTTTC-TT
*
76752669 AAATTTCA-ATTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTA-A-CCCTAAACTTTC-TT
* *
76752699 AAATTTCATTTTAATCCTAAATTTTCT
1 AAATTTCATTTTAACCCTAAACTTTCT
76752726 AAAAATTACA
Statistics
Matches: 71, Mismatches: 9, Indels: 14
0.76 0.10 0.15
Matches are distributed among these distances:
28 7 0.10
29 28 0.39
30 33 0.46
31 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (28 bp):
AAATTTCATTTTAACCCTAAACTTTCTT
Found at i:76752732 original size:59 final size:59
Alignment explanation
Indices: 76752607--76752732 Score: 157
Period size: 59 Copynumber: 2.1 Consensus size: 59
76752597 ATTTAAAAAA
* * *
76752607 TAAAAATTGCATTTTGACCCCTAAACTTTTCTTAAATTTCATTTTGACCCTTAAATTTC
1 TAAAAATTGCAATTAGACCCCTAAACTTTTCTTAAATTTCATTTTAACCCTTAAATTTC
** * *
76752666 TTTAAATTTCAATTAGACCCCTAAAC-TTTCATTAAATTTCATTTTAATCC-TAAATTTTC
1 TAAAAATTGCAATTAGACCCCTAAACTTTTC-TTAAATTTCATTTTAACCCTTAAA-TTTC
76752725 TAAAAATT
1 TAAAAATT
76752733 ACATTTAGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
58 8 0.14
59 48 0.86
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.44
Consensus pattern (59 bp):
TAAAAATTGCAATTAGACCCCTAAACTTTTCTTAAATTTCATTTTAACCCTTAAATTTC
Found at i:76752993 original size:10 final size:10
Alignment explanation
Indices: 76752974--76753023 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
76752964 TTTTTCGAAG
*
76752974 GAAAAAAGAA
1 GAAAAGAGAA
76752984 GAAAAGAGAA
1 GAAAAGAGAA
76752994 GAAAAGAGAA
1 GAAAAGAGAA
* *
76753004 -AGAGGAGAA
1 GAAAAGAGAA
76753013 GAAAAGA-AA
1 GAAAAGAGAA
76753022 GA
1 GA
76753024 GTACCGGCGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAGAGAA
Found at i:76753024 original size:17 final size:19
Alignment explanation
Indices: 76752977--76753019 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
76752967 TTCGAAGGAA
76752977 AAAAGAAGAAA-A-GAGAAG
1 AAAAG-AGAAAGAGGAGAAG
76752995 AAAAGAGAAAGAGGAGAAG
1 AAAAGAGAAAGAGGAGAAG
76753014 AAAAGA
1 AAAAGA
76753020 AAGAGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAGAGAAAGAGGAGAAG
Found at i:76753095 original size:3 final size:3
Alignment explanation
Indices: 76753089--76753119 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
76753079 GTGTAGGAGG
76753089 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
76753120 AGAAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:76753319 original size:14 final size:14
Alignment explanation
Indices: 76753281--76753317 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
76753271 AAAACCAAAG
76753281 CAAAAAAAAGTAGCC
1 CAAAAAAAAG-AGCC
76753296 CAAAAAAAAG-GCC
1 CAAAAAAAAGAGCC
76753309 CAAAAAAAA
1 CAAAAAAAA
76753318 AGAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 12 0.55
15 10 0.45
ACGTcount: A:0.68, C:0.19, G:0.11, T:0.03
Consensus pattern (14 bp):
CAAAAAAAAGAGCC
Found at i:76753331 original size:22 final size:23
Alignment explanation
Indices: 76753297--76753339 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
76753287 AAAGTAGCCC
76753297 AAAAAAAAGGCCCAAAAAAAAAG
1 AAAAAAAAGGCCCAAAAAAAAAG
* *
76753320 AAAAAATA-GCCCAGAAAAAA
1 AAAAAAAAGGCCCAAAAAAAA
76753340 GAAGCAGGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.72, C:0.14, G:0.12, T:0.02
Consensus pattern (23 bp):
AAAAAAAAGGCCCAAAAAAAAAG
Found at i:76753454 original size:15 final size:15
Alignment explanation
Indices: 76753434--76753529 Score: 99
Period size: 15 Copynumber: 6.5 Consensus size: 15
76753424 CAGGCCAGGA
* *
76753434 AAAAAAGAGAGAAAG
1 AAAAAAGAAAAAAAG
76753449 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
*
76753464 AAAGAAG-AAAAAAG
1 AAAAAAGAAAAAAAG
*
76753478 AAAAGAGAAAAAAAGG
1 AAAAAAGAAAAAAA-G
*
76753494 AAAAAAGGAAAAAAG
1 AAAAAAGAAAAAAAG
* *
76753509 AAGAAA-AAAAGAA-
1 AAAAAAGAAAAAAAG
76753522 AAAAAAGA
1 AAAAAAGA
76753530 GTTTCAATTC
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
13 5 0.07
14 18 0.27
15 31 0.46
16 13 0.19
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:76753460 original size:8 final size:8
Alignment explanation
Indices: 76753432--76753526 Score: 90
Period size: 8 Copynumber: 12.0 Consensus size: 8
76753422 AGCAGGCCAG
76753432 GAAAAAAA
1 GAAAAAAA
* *
76753440 GAGAGAAA
1 GAAAAAAA
76753448 G-AAAAAA
1 GAAAAAAA
76753455 GAAAAAAA
1 GAAAAAAA
*
76753463 G-AAAGAA
1 GAAAAAAA
76753470 G-AAAAAA
1 GAAAAAAA
*
76753477 G-AAAAGA
1 GAAAAAAA
76753484 GAAAAAAA
1 GAAAAAAA
*
76753492 GGAAAAAAG
1 -GAAAAAAA
76753501 GAAAAAAGAA
1 G-AAAAA-AA
76753511 GAAAAAAA
1 GAAAAAAA
76753519 GAAAAAAA
1 GAAAAAAA
76753527 AGAGTTTCAA
Statistics
Matches: 72, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
7 23 0.32
8 30 0.42
9 17 0.24
10 2 0.03
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (8 bp):
GAAAAAAA
Found at i:76753467 original size:19 final size:18
Alignment explanation
Indices: 76753443--76753527 Score: 91
Period size: 19 Copynumber: 4.6 Consensus size: 18
76753433 AAAAAAAGAG
76753443 AGAAAGAAAAAAGAAAAAA
1 AGAAA-AAAAAAGAAAAAA
*
76753462 AGAAAGAAGAAAA-AAGAAA
1 AGAAA-AA-AAAAGAAAAAA
*
76753481 AGAGAAAAAAAGGAAAAAA
1 AGA-AAAAAAAAGAAAAAA
* *
76753500 GGAAAAAAGAAGAAAAAA
1 AGAAAAAAAAAGAAAAAA
76753518 AGAAAAAAAA
1 AGAAAAAAAA
76753528 GAGTTTCAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
18 24 0.44
19 25 0.45
20 6 0.11
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAGAAAAAA
Found at i:76753490 original size:37 final size:35
Alignment explanation
Indices: 76753449--76753529 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 35
76753439 AGAGAGAAAG
*
76753449 AAAAAAGAAAAAAAGAAAGAAGAAAAAAGAAAAGAGA
1 AAAAAAGAAAAAAAGAAAAAAGAAAAAA-AAAAGA-A
* *
76753486 AAAAAAGGAAAAAAGGAAAAAAGAAGAAAAAAAGAA
1 AAAAAA-GAAAAAAAGAAAAAAGAAAAAAAAAAGAA
76753522 AAAAAAGA
1 AAAAAAGA
76753530 GTTTCAATTC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
35 2 0.05
36 7 0.17
37 12 0.30
38 19 0.47
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (35 bp):
AAAAAAGAAAAAAAGAAAAAAGAAAAAAAAAAGAA
Found at i:76753520 original size:52 final size:51
Alignment explanation
Indices: 76753432--76753529 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 51
76753422 AGCAGGCCAG
*
76753432 GAAAAAAAGAGAGAAAGAAAAAAGAAAAAAAGAAAGAAGAAAAAAGAAAAGA
1 GAAAAAAAGAGAAAAAGAAAAAAGAAAAAAAGAAAGAA-AAAAAAGAAAAGA
*
76753484 GAAAAAAAG-GAAAAAAGGAAAAAAGAAGAAAA-AAAGAAAAAAAAGA
1 GAAAAAAAGAG-AAAAA-GAAAAAAGAAAAAAAGAAAGAAAAAAAAGA
76753530 GTTTCAATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
51 9 0.21
52 19 0.45
53 14 0.33
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (51 bp):
GAAAAAAAGAGAAAAAGAAAAAAGAAAAAAAGAAAGAAAAAAAAGAAAAGA
Found at i:76754044 original size:16 final size:16
Alignment explanation
Indices: 76754020--76754051 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76754010 TGAATATCAC
*
76754020 CGATTCGTGTTTAATA
1 CGATACGTGTTTAATA
76754036 CGATACGTGTTTAATA
1 CGATACGTGTTTAATA
76754052 AAAAATCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (16 bp):
CGATACGTGTTTAATA
Found at i:76754184 original size:18 final size:17
Alignment explanation
Indices: 76754110--76754272 Score: 159
Period size: 17 Copynumber: 9.4 Consensus size: 17
76754100 ATCTATTTTC
* *
76754110 CAAAATTTTTAGTGTCTT
1 CAAAAATTTTCGTGT-TT
*
76754128 CTAAAAATTTTTGTGTTT
1 C-AAAAATTTTCGTGTTT
76754146 CAAAAATTTTCGT-TTT
1 CAAAAATTTTCGTGTTT
*
76754162 CAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTT
76754179 CAAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTG-TTT
* *
76754197 CAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTT
** *
76754214 CAAAAATCCTCTTGTTTT
1 CAAAAATTTTCGTG-TTT
76754232 CAAAAA-TTTCGGTGTTT
1 CAAAAATTTTC-GTGTTT
**
76754249 TGAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTG-TTT
76754267 CAAAAA
1 CAAAAA
76754273 AAAATCTCGT
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
16 15 0.13
17 51 0.43
18 41 0.34
19 12 0.10
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (17 bp):
CAAAAATTTTCGTGTTT
Found at i:76754272 original size:35 final size:34
Alignment explanation
Indices: 76754110--76754272 Score: 168
Period size: 35 Copynumber: 4.7 Consensus size: 34
76754100 ATCTATTTTC
* * * *
76754110 CAAAATTTTTAGTGTCTTCTAAAAATTTTTGTGTTT
1 CAAAAATTTTCGTGTTTTC-AAAAA-TTTCGTGTTT
76754146 CAAAAATTTTC--GTTTTCAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTT-CGTGTTT
* *
76754179 CAAAAATTTTCGTGTTTTCAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTTTCAAAA-ATTTCGTGTTT
** *
76754214 CAAAAATCCTCTTGTTTTCAAAAATTTCGGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTTC-GTGTTT
**
76754249 TGAAAATTTTCGTGTTTTCAAAAA
1 CAAAAATTTTCGTGTTTTCAAAAA
76754273 AAAATCTCGT
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
32 3 0.03
33 22 0.21
34 9 0.08
35 60 0.57
36 12 0.11
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (34 bp):
CAAAAATTTTCGTGTTTTCAAAAATTTCGTGTTT
Found at i:76754285 original size:38 final size:36
Alignment explanation
Indices: 76754233--76754359 Score: 100
Period size: 35 Copynumber: 3.4 Consensus size: 36
76754223 TCTTGTTTTC
*
76754233 AAAAATTTCGGTGTTTTGAAAATTTTCGTGTTTTCAAAA
1 AAAAATCTC-GTGTTTT-AAAATTTTCGTGTTTT-AAAA
*
76754272 AAAAATCTCGTGTTTCATAAATTTT-G-GTTTTAAAA
1 AAAAATCTCGTGTTTTA-AAATTTTCGTGTTTTAAAA
* * * *
76754307 AAATAT-T-ATGTCTTAAAATTCTCGTGTTTTTAAAA
1 AAAAATCTCGTGTTTTAAAATTTTCGTG-TTTTAAAA
76754342 CAAGAAATTCTCGTGTTT
1 -AA-AAA-TCTCGTGTTT
76754360 CAATCGGATC
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
32 6 0.09
33 6 0.09
34 2 0.03
35 17 0.25
36 7 0.10
37 4 0.06
38 14 0.20
39 9 0.13
40 4 0.06
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (36 bp):
AAAAATCTCGTGTTTTAAAATTTTCGTGTTTTAAAA
Found at i:76766315 original size:16 final size:17
Alignment explanation
Indices: 76766294--76766327 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
76766284 TGCTGAGGTA
*
76766294 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
76766310 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
76766327 T
1 T
76766328 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:76766575 original size:180 final size:176
Alignment explanation
Indices: 76766240--76766575 Score: 496
Period size: 176 Copynumber: 1.9 Consensus size: 176
76766230 TGTTTTTCAA
* *
76766240 AAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATTTA
1 AAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAAATTA
* *
76766305 TGTTTTTTTCAATCTATGCTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAG
66 TGTTTTTTTCAATCTATGCTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAG
76766370 GCACGCTGAGGTATTTTCAATTTCTGCCTTACTAATTCTACTTTTC
131 GCACGCTGAGGTATTTTCAATTTCTGCCTTACTAATTCTACTTTTC
* * *
76766416 AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGC-CACACGCTGAGGTCTTTTCAAATT
1 AAATCAACTCATATTGCAAGAGATGAGTTGAGCCTC-GGCTCACACGCTGAGGTATTTTCAAATT
* * * *
76766480 CTGTTTTTTTTAATTTCTG-TGTTTCAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
65 ATGTTTTTTTCAATCTATGCT-TTTC----AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
*
76766544 CTCAGGGCACGCTGAGGTATTTTCAATTTCTG
125 CTCAAGGCACGCTGAGGTATTTTCAATTTCTG
76766576 TTTTTCAAAA
Statistics
Matches: 142, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
175 1 0.01
176 74 0.52
177 3 0.02
180 64 0.45
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (176 bp):
AAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAAATTA
TGTTTTTTTCAATCTATGCTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAG
GCACGCTGAGGTATTTTCAATTTCTGCCTTACTAATTCTACTTTTC
Done.