Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 237 of 253
Found at i:76979587 original size:29 final size:29
Alignment explanation
Indices: 76979521--76979583 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
76979511 TATAAATTTG
** *
76979521 AAATTTAGT-CTTTTTATTTTATTTTTTT
1 AAATTTAGTGCTTTTTATTTTAGATTTTA
76979549 AAATTTAGTGCTTTTT-TTTTAGATTTTA
1 AAATTTAGTGCTTTTTATTTTAGATTTTA
76979577 AAATTTA
1 AAATTTA
76979584 AGTGTAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 25 0.81
29 6 0.19
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.63
Consensus pattern (29 bp):
AAATTTAGTGCTTTTTATTTTAGATTTTA
Found at i:76982514 original size:18 final size:17
Alignment explanation
Indices: 76982487--76982520 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
76982477 TATAATAAAT
*
76982487 TTAATTTTATGTATATTA
1 TTAATCTTATGT-TATTA
76982505 TTAATCTTATGTTATT
1 TTAATCTTATGTTATT
76982521 TTATACATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (17 bp):
TTAATCTTATGTTATTA
Found at i:76983581 original size:14 final size:14
Alignment explanation
Indices: 76983562--76983589 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76983552 ATAAGGCAAT
76983562 GTTCAATATTTGAA
1 GTTCAATATTTGAA
76983576 GTTCAATATTTGAA
1 GTTCAATATTTGAA
76983590 AATTCGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
GTTCAATATTTGAA
Found at i:76985643 original size:22 final size:22
Alignment explanation
Indices: 76985586--76985644 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
76985576 ACCACATCAC
* *
76985586 TAGGCACCAAAGTGCTGAGCAG
1 TAGGCACCAAAGTGCTGAACAA
* ** *
76985608 TAAGCACCGGAGTGTTGAACAA
1 TAGGCACCAAAGTGCTGAACAA
*
76985630 TAGGCACCATAGTGC
1 TAGGCACCAAAGTGC
76985645 AAATCAGTAG
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.32, C:0.22, G:0.29, T:0.17
Consensus pattern (22 bp):
TAGGCACCAAAGTGCTGAACAA
Found at i:76985681 original size:20 final size:22
Alignment explanation
Indices: 76985640--76985688 Score: 75
Period size: 20 Copynumber: 2.3 Consensus size: 22
76985630 TAGGCACCAT
76985640 AGTGCAAATCAGTAGCCACCGA
1 AGTGCAAATCAGTAGCCACCGA
*
76985662 AGTGCAAA-CAGT-GGCACCGA
1 AGTGCAAATCAGTAGCCACCGA
76985682 AGTGCAA
1 AGTGCAA
76985689 TCCTGTACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 14 0.54
21 4 0.15
22 8 0.31
ACGTcount: A:0.37, C:0.24, G:0.27, T:0.12
Consensus pattern (22 bp):
AGTGCAAATCAGTAGCCACCGA
Found at i:76988155 original size:23 final size:23
Alignment explanation
Indices: 76988115--76988219 Score: 58
Period size: 23 Copynumber: 4.6 Consensus size: 23
76988105 ATGTAAAAAA
*
76988115 TTAAAGTAAATAATAATAAAACATT
1 TTAAAATAAAT-A-AATAAAACATT
* *
76988140 TTAAAATAAATAAAT---AGAGT
1 TTAAAATAAATAAATAAAACATT
* * * *
76988160 TCAAAATAAGGTATATAAAACAAT
1 TTAAAATAA-ATAAATAAAACATT
*
76988184 TTAAAATAAGT-AATCAAAACAATT
1 TTAAAATAAATAAAT-AAAAC-ATT
76988208 TT-AAATAAATAA
1 TTAAAATAAATAA
76988220 TATATAATAA
Statistics
Matches: 61, Mismatches: 12, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
20 11 0.18
21 4 0.07
22 2 0.03
23 17 0.28
24 17 0.28
25 10 0.16
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.30
Consensus pattern (23 bp):
TTAAAATAAATAAATAAAACATT
Found at i:76988190 original size:24 final size:23
Alignment explanation
Indices: 76988162--76988220 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
76988152 AATAGAGTTC
76988162 AAAATAAGGTATAT-AAAACAATTT
1 AAAATAA-GTA-ATCAAAACAATTT
76988186 AAAATAAGTAATCAAAACAATTT
1 AAAATAAGTAATCAAAACAATTT
* *
76988209 TAAATAAATAAT
1 AAAATAAGTAAT
76988221 ATATAATAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
22 2 0.06
23 23 0.72
24 7 0.22
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (23 bp):
AAAATAAGTAATCAAAACAATTT
Found at i:76990816 original size:40 final size:40
Alignment explanation
Indices: 76990769--76990851 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
76990759 TATGGGATAT
** *
76990769 TGAATATTGTTTTGAATACTGAATTGAACTGTGAAATTCC
1 TGAATATTGTTACGAATACTGAATTGAACTGTAAAATTCC
* * *
76990809 TGAATATTGTTACGTATACTGCATTGAACTGTAAAATTTC
1 TGAATATTGTTACGAATACTGAATTGAACTGTAAAATTCC
76990849 TGA
1 TGA
76990852 TGAAACGAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.40
Consensus pattern (40 bp):
TGAATATTGTTACGAATACTGAATTGAACTGTAAAATTCC
Found at i:76991176 original size:17 final size:19
Alignment explanation
Indices: 76991156--76991190 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
76991146 TGAATACTAT
76991156 TATTGTT-CTG-TTACTGC
1 TATTGTTACTGATTACTGC
76991173 TATTGTTACTGATTACTG
1 TATTGTTACTGATTACTG
76991191 TTTAGCTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.51
Consensus pattern (19 bp):
TATTGTTACTGATTACTGC
Found at i:76995884 original size:26 final size:26
Alignment explanation
Indices: 76995846--76995903 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
76995836 CATGAAATTC
76995846 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
76995872 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76995898 TTATCA
1 TTATCA
76995904 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76997025 original size:35 final size:35
Alignment explanation
Indices: 76996958--76997031 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
76996948 AAACAATAAA
* *
76996958 AATACAATATTAAAATATATATATAATGTATACAT
1 AATACAATATTAAAATATATACATAATATATACAT
* * **
76996993 AATATAATATTAAAATATTTACATGGTATATACAT
1 AATACAATATTAAAATATATACATAATATATACAT
76997028 AATA
1 AATA
76997032 ATGTAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (35 bp):
AATACAATATTAAAATATATACATAATATATACAT
Found at i:76997586 original size:40 final size:40
Alignment explanation
Indices: 76997520--76997641 Score: 176
Period size: 39 Copynumber: 3.1 Consensus size: 40
76997510 AAAGTTGATT
* *
76997520 CCACTCCCCCTATGCTACTTTG-TTTTATTATTAATTAAAA
1 CCACT-CCCCTATACTATTTTGTTTTTATTATTAATTAAAA
*
76997560 CTACTCCCCTATACTATTTTGTTTTTATTATTAATTAAAA
1 CCACTCCCCTATACTATTTTGTTTTTATTATTAATTAAAA
* *
76997600 CCATTTCCC-ATACTATTTTGTTTTTATTATTAATTAAAA
1 CCACTCCCCTATACTATTTTGTTTTTATTATTAATTAAAA
76997639 CCA
1 CCA
76997642 TACTTTATTT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 47 0.63
40 28 0.37
ACGTcount: A:0.30, C:0.20, G:0.03, T:0.47
Consensus pattern (40 bp):
CCACTCCCCTATACTATTTTGTTTTTATTATTAATTAAAA
Found at i:76998279 original size:22 final size:22
Alignment explanation
Indices: 76998254--76998298 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
76998244 ATACAATTTC
76998254 TTCTCTCC-CAAAATACAATCGA
1 TTCT-TCCTCAAAATACAATCGA
*
76998276 TTCTTCCTCAAAATACCATCGA
1 TTCTTCCTCAAAATACAATCGA
76998298 T
1 T
76998299 CCCCCCATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.31
Consensus pattern (22 bp):
TTCTTCCTCAAAATACAATCGA
Found at i:77013564 original size:18 final size:19
Alignment explanation
Indices: 77013549--77013584 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
77013539 TTTTTTTTTT
77013549 CCAAAAATG-CTTTTTTAG
1 CCAAAAATGTCTTTTTTAG
*
77013567 CCAAAAGTGTCTTTTTTA
1 CCAAAAATGTCTTTTTTA
77013585 AGCAATACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (19 bp):
CCAAAAATGTCTTTTTTAG
Found at i:77015970 original size:23 final size:23
Alignment explanation
Indices: 77015944--77015988 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
77015934 TCACTTATTG
77015944 CTTTGAGCAATGAGTTGCAATTT
1 CTTTGAGCAATGAGTTGCAATTT
* *
77015967 CTTTGAGCATTGATTTGCAATT
1 CTTTGAGCAATGAGTTGCAATT
77015989 GAAAGGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (23 bp):
CTTTGAGCAATGAGTTGCAATTT
Found at i:77021798 original size:37 final size:37
Alignment explanation
Indices: 77021733--77021821 Score: 97
Period size: 37 Copynumber: 2.3 Consensus size: 37
77021723 TATAATTTTC
* ** * *
77021733 AAAATAAAAATATGTTAGAATTTTTAAAAAATTGTAAA
1 AAAATAAAAAT-TATTAGAAAATGTAAAAAAGTGTAAA
*
77021771 AAAATAAAAATTATTAGAAAATGTAAAATAGTGTAAA
1 AAAATAAAAATTATTAGAAAATGTAAAAAAGTGTAAA
77021808 AATAATTAAAAATT
1 AA-AA-TAAAAATT
77021822 TATAAATAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
37 22 0.51
38 13 0.30
39 8 0.19
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (37 bp):
AAAATAAAAATTATTAGAAAATGTAAAAAAGTGTAAA
Found at i:77021808 original size:29 final size:29
Alignment explanation
Indices: 77021775--77021839 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
77021765 TGTAAAAAAA
*
77021775 TAAAAATTATTAGAAAATGTA-AAATAGTG
1 TAAAAATAATTA-AAAATGTATAAATAGTG
*
77021804 TAAAAATAATTAAAAATTTATAAATAGT-
1 TAAAAATAATTAAAAATGTATAAATAGTG
*
77021832 AAAAAATA
1 TAAAAATA
77021840 TTGTATCTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (29 bp):
TAAAAATAATTAAAAATGTATAAATAGTG
Found at i:77023319 original size:14 final size:14
Alignment explanation
Indices: 77023300--77023329 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77023290 CAAATTTGTC
*
77023300 TTTTTTTTAGTTTT
1 TTTTTTTTACTTTT
77023314 TTTTTTTTACTTTT
1 TTTTTTTTACTTTT
77023328 TT
1 TT
77023330 ATAGAACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.03, G:0.03, T:0.87
Consensus pattern (14 bp):
TTTTTTTTACTTTT
Found at i:77023687 original size:25 final size:24
Alignment explanation
Indices: 77023653--77023717 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 24
77023643 TTTTTATTTG
* * *
77023653 TTTTTCATTTGTTTCTTTTTCTGA
1 TTTTTTATTTGTTTCCTTTTCCGA
77023677 TTCTTTTATTTGTTTGTCCTTTTCCGA
1 TT-TTTTATTTG-TT-TCCTTTTCCGA
77023704 TTTTTTATTTGTTT
1 TTTTTTATTTGTTT
77023718 TTCTTTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 3 0.09
25 10 0.29
26 11 0.31
27 11 0.31
ACGTcount: A:0.08, C:0.12, G:0.09, T:0.71
Consensus pattern (24 bp):
TTTTTTATTTGTTTCCTTTTCCGA
Found at i:77023723 original size:25 final size:25
Alignment explanation
Indices: 77023653--77023723 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
77023643 TTTTTATTTG
* * *
77023653 TTTTTCATTTGTTTCT-TTTTCTGA
1 TTTTTTATTTGTTTTTCTTTTCCGA
*
77023677 TTCTTTTATTTGTTTGTCCTTTTCCGA
1 TT-TTTTATTTGTTT-TTCTTTTCCGA
77023704 TTTTTTATTTGTTTTTCTTT
1 TTTTTTATTTGTTTTTCTTT
77023724 ATTTACTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 2 0.05
25 16 0.41
26 12 0.31
27 9 0.23
ACGTcount: A:0.07, C:0.13, G:0.08, T:0.72
Consensus pattern (25 bp):
TTTTTTATTTGTTTTTCTTTTCCGA
Found at i:77023911 original size:23 final size:23
Alignment explanation
Indices: 77023885--77023975 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 23
77023875 TTATTATTTG
*
77023885 TTTTATAATATTTTAAATGTATA
1 TTTTATAATATTTTAAATATATA
*
77023908 TTTTAAAAT-TTTTAAATATAT-
1 TTTTATAATATTTTAAATATATA
* * * *
77023929 TTTTTTAA-AATTTAAATTTAAA
1 TTTTATAATATTTTAAATATATA
*
77023951 TTTTTAAAATTATTTTTAAATATAT
1 -TTTTATAA-TA-TTTTAAATATAT
77023976 TAAAACTTTT
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
21 15 0.30
22 11 0.22
23 14 0.28
25 1 0.02
26 9 0.18
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (23 bp):
TTTTATAATATTTTAAATATATA
Found at i:77023920 original size:22 final size:23
Alignment explanation
Indices: 77023885--77023941 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
77023875 TTATTATTTG
* *
77023885 TTTTATAATATTTTAAATGTA-TA
1 TTTTAAAAT-TTTTAAATATATTA
*
77023908 TTTTAAAATTTTTAAATATATTT
1 TTTTAAAATTTTTAAATATATTA
77023931 TTTTAAAATTT
1 TTTTAAAATTT
77023942 AAATTTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 10 0.33
23 20 0.67
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTTAAAATTTTTAAATATATTA
Found at i:77023965 original size:12 final size:12
Alignment explanation
Indices: 77023950--77024006 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
77023940 TTAAATTTAA
77023950 ATTTTTAAAATT
1 ATTTTTAAAATT
77023962 ATTTTT-AAA-T
1 ATTTTTAAAATT
*
77023972 A-TATTAAAACTT
1 ATTTTTAAAA-TT
77023984 -TTTTT-AAATT
1 ATTTTTAAAATT
*
77023994 ATATTTAAAATT
1 ATTTTTAAAATT
77024006 A
1 A
77024007 AAAAATATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
9 3 0.08
10 7 0.19
11 10 0.28
12 16 0.44
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTTTAAAATT
Found at i:77023968 original size:20 final size:21
Alignment explanation
Indices: 77023930--77023993 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
77023920 TAAATATATT
* **
77023930 TTTTTAAAATTTAAATTTAAA
1 TTTTTAAAACTTATTTTTAAA
77023951 TTTTTAAAA-TTATTTTTAAA
1 TTTTTAAAACTTATTTTTAAA
*
77023971 TATATTAAAACTT-TTTTTAAA
1 T-TTTTAAAACTTATTTTTAAA
77023992 TT
1 TT
77023994 ATATTTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 11 0.29
21 25 0.66
22 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTTTAAAACTTATTTTTAAA
Found at i:77023979 original size:35 final size:35
Alignment explanation
Indices: 77023913--77023979 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
77023903 GTATATTTTA
*
77023913 AAATTTTTAAATATATTTTTTTAAAATTTAAATTT
1 AAATTTTTAAATATATATTTTTAAAATTTAAATTT
77023948 AAATTTTTAAA-AT-TATTTTTAAATATATTAAA
1 AAATTTTTAAATATATATTTTTAAA-AT-TTAAA
77023980 ACTTTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 9 0.31
34 4 0.14
35 16 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (35 bp):
AAATTTTTAAATATATATTTTTAAAATTTAAATTT
Found at i:77030125 original size:3 final size:3
Alignment explanation
Indices: 77030117--77030373 Score: 137
Period size: 3 Copynumber: 87.7 Consensus size: 3
77030107 TAGTACCATG
* * *
77030117 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA ATA AAA ATA ACA AT- ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
77030163 TTA CTA ATA ATA ATA ATAA ATA A-A A-A ATG ATA GTA A-A TATA TATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA -ATA
* * *
77030208 A-A ATA ATA GTA ACA GTA ATA A-A ATA A-A TATA AT- ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * * *
77030249 TGTA ATA ATA ATA ATCA A-A ATA AAA ATA ATA A-C ATG TTA CTA ATA
1 -ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
77030294 ATA ATA ATA ATA AGTA ATA ATA TATA ATA ATA ACA GTA ATA A-A ATA
1 ATA ATA ATA ATA A-TA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
77030340 ACA ATA GTG ATA ATA TTA A-A ATA ATG ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
77030374 GTCAAATTAA
Statistics
Matches: 192, Mismatches: 42, Indels: 40
0.70 0.15 0.15
Matches are distributed among these distances:
2 24 0.12
3 150 0.78
4 18 0.09
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:77030147 original size:20 final size:20
Alignment explanation
Indices: 77030117--77030373 Score: 121
Period size: 20 Copynumber: 11.9 Consensus size: 20
77030107 TAGTACCATG
77030117 ATAATAATAATAATAATAATA
1 ATAA-AATAATAATAATAATA
* *
77030138 ATAAAATAATAAAAATAACA
1 ATAAAATAATAATAATAATA
77030158 ATATGTTACTAATAATAATAATAAATA
1 ATA----A--AATAATAATAAT-AATA
* *
77030185 A-AAAATGATAGTAA-ATATA
1 ATAAAATAATAATAATA-ATA
* * *
77030204 TATAAAATAATAGTAACAGTA
1 -ATAAAATAATAATAATAATA
77030225 ATAAAATAA-ATATAAT-ATA
1 ATAAAATAATA-ATAATAATA
*
77030244 AT-AAAT-GTAATAATAATA
1 ATAAAATAATAATAATAATA
*
77030262 ATCAAAATAAAAATAATAACATGTTA
1 AT-AAAATAATAATAAT-A-A---TA
*
77030288 CTAATAATAATAATAATAAGTA
1 ATAA-AATAATAATAATAA-TA
* *
77030310 ATAATATATAATAATAACAGTA
1 ATAA-A-ATAATAATAATAATA
*
77030332 ATAAAATAACAATAGTGATAATA
1 ATAAAATAATAATA---ATAATA
* *
77030355 TTAAAATAATGATAATAAT
1 ATAAAATAATAATAATAAT
77030374 GTCAAATTAA
Statistics
Matches: 183, Mismatches: 26, Indels: 55
0.69 0.10 0.21
Matches are distributed among these distances:
17 5 0.03
18 11 0.06
19 8 0.04
20 56 0.31
21 25 0.14
22 16 0.09
23 27 0.15
24 2 0.01
25 3 0.02
26 26 0.14
27 4 0.02
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (20 bp):
ATAAAATAATAATAATAATA
Found at i:77032233 original size:8 final size:8
Alignment explanation
Indices: 77032222--77032286 Score: 53
Period size: 8 Copynumber: 7.8 Consensus size: 8
77032212 ACCTATTAAA
77032222 TTTAAAAT
1 TTTAAAAT
77032230 TTTAAAAT
1 TTTAAAAT
77032238 TTTAAAAT
1 TTTAAAAT
*
77032246 TAGTTATAA-
1 T--TTAAAAT
77032255 -TTAAAAT
1 TTTAAAAT
77032262 TTTAATATAT
1 TTTAA-A-AT
*
77032272 TTTAATAT
1 TTTAAAAT
77032280 ATTTAAA
1 -TTTAAA
77032287 TATATTAAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
6 5 0.11
8 23 0.50
9 6 0.13
10 12 0.26
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (8 bp):
TTTAAAAT
Found at i:77032273 original size:10 final size:10
Alignment explanation
Indices: 77032260--77032292 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
77032250 TATAATTAAA
77032260 ATTTTAATAT
1 ATTTTAATAT
77032270 ATTTTAATAT
1 ATTTTAATAT
*
77032280 ATTTAAATAT
1 ATTTTAATAT
77032290 ATT
1 ATT
77032293 AAGTATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTTAATAT
Found at i:77032289 original size:18 final size:19
Alignment explanation
Indices: 77032262--77032312 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
77032252 TAATTAAAAT
77032262 TTTAATATATTTTAA-TATA
1 TTTAA-ATATTTTAAGTATA
*
77032281 TTTAAATATATTAAGTATA
1 TTTAAATATTTTAAGTATA
*
77032300 -TTAAAAATTTTAA
1 TTTAAATATTTTAA
77032313 ATTGATTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 19 0.68
19 9 0.32
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTAAATATTTTAAGTATA
Found at i:77032299 original size:19 final size:19
Alignment explanation
Indices: 77032250--77032301 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
77032240 TAAAATTAGT
*
77032250 TATA-ATTAAAAT-TTTAA
1 TATATATTAATATATTTAA
*
77032267 TATATTTTAATATATTTAA
1 TATATATTAATATATTTAA
77032286 -ATATATTAAGTATATT
1 TATATATTAA-TATATT
77032302 AAAAATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 4 0.14
18 14 0.48
19 11 0.38
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TATATATTAATATATTTAA
Found at i:77032361 original size:19 final size:20
Alignment explanation
Indices: 77032329--77032372 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
77032319 TCTACTTGAC
77032329 ATTTTTTAACATA-TTTAAA
1 ATTTTTTAACATATTTTAAA
77032348 ATTTCTTTAA-ATATTTTAAA
1 ATTT-TTTAACATATTTTAAA
77032368 ATTTT
1 ATTTT
77032373 AAATATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTTTAACATATTTTAAA
Found at i:77032373 original size:8 final size:9
Alignment explanation
Indices: 77032332--77032378 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 9
77032322 ACTTGACATT
77032332 TTTTAACATA
1 TTTTAA-ATA
* *
77032342 TTTAAAATT
1 TTTTAAATA
77032351 TCTTTAAATA
1 T-TTTAAATA
77032361 TTTTAAA-A
1 TTTTAAATA
77032369 TTTTAAATA
1 TTTTAAATA
77032378 T
1 T
77032379 ATTACAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
8 8 0.26
9 11 0.35
10 12 0.39
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (9 bp):
TTTTAAATA
Found at i:77032432 original size:8 final size:8
Alignment explanation
Indices: 77032419--77032495 Score: 55
Period size: 8 Copynumber: 9.0 Consensus size: 8
77032409 AAAAAATATA
77032419 TTAAAATT
1 TTAAAATT
77032427 TTAAAATAT
1 TTAAAAT-T
*
77032436 TTAAAAAAAT
1 TT--AAAATT
* *
77032446 TGAATATAT
1 TTAAAAT-T
77032455 TTAAAATTT
1 TTAAAA-TT
* *
77032464 TTAACATA
1 TTAAAATT
*
77032472 TTACAATT
1 TTAAAATT
77032480 TTAAAATT
1 TTAAAATT
77032488 TTAAAATT
1 TTAAAATT
77032496 GGTTATACTT
Statistics
Matches: 52, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
8 31 0.60
9 14 0.27
10 3 0.06
11 4 0.08
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (8 bp):
TTAAAATT
Found at i:77032434 original size:18 final size:18
Alignment explanation
Indices: 77032411--77032566 Score: 64
Period size: 18 Copynumber: 8.9 Consensus size: 18
77032401 TACCTATTAA
77032411 AAAATATATTAAAATTTT
1 AAAATATATTAAAATTTT
**
77032429 AAAATAT-TTAAAAAAATT
1 AAAATATATT-AAAATTTT
*
77032447 -GAATATATTTAAAATTTT
1 AAAATATA-TTAAAATTTT
* * *
77032465 -TAACATATTACAATTTT
1 AAAATATATTAAAATTTT
77032482 AAAAT-T-TTAAAATTGGTT
1 AAAATATATTAAAATT--TT
* *
77032500 ---ATA-CTTAACATTTTT
1 AAAATATATTAA-AATTTT
* **
77032515 TAAATATATTTAATTTTTT
1 AAAATATA-TTAAAATTTT
*
77032534 AAAATATATTAAATATATT
1 AAAATATATTAAA-ATTTT
77032553 AAAAT-T-TTAAAATT
1 AAAATATATTAAAATT
77032567 AGTTATATTA
Statistics
Matches: 104, Mismatches: 19, Indels: 32
0.67 0.12 0.21
Matches are distributed among these distances:
15 4 0.04
16 13 0.12
17 25 0.24
18 36 0.35
19 22 0.21
20 4 0.04
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.47
Consensus pattern (18 bp):
AAAATATATTAAAATTTT
Found at i:77032538 original size:19 final size:19
Alignment explanation
Indices: 77032499--77032557 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
77032489 TAAAATTGGT
77032499 TATACTTAACATTTTTT-AAA
1 TATA-TTAA-ATTTTTTAAAA
*
77032519 TATATTTAATTTTTTAAAA
1 TATATTAAATTTTTTAAAA
* *
77032538 TATATTAAATATATTAAAA
1 TATATTAAATTTTTTAAAA
77032557 T
1 T
77032558 TTTAAAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 7 0.21
19 23 0.68
20 4 0.12
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (19 bp):
TATATTAAATTTTTTAAAA
Found at i:77032620 original size:17 final size:17
Alignment explanation
Indices: 77032581--77032620 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
77032571 ATATTAACAT
77032581 TTTTTTAATATATTTAA
1 TTTTTTAATATATTTAA
**
77032598 AATTTTAATATATTTAA
1 TTTTTTAATATATTTAA
77032615 TTTTTT
1 TTTTTT
77032621 TAAGCTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTTAATATATTTAA
Found at i:77032637 original size:71 final size:71
Alignment explanation
Indices: 77032448--77032614 Score: 227
Period size: 70 Copynumber: 2.4 Consensus size: 71
77032438 AAAAAAATTG
* * *
77032448 AATATATTTAAAATTTT-TAACATATTACAAT-T-TTAAAATTTTAAAATTGGTTATACTTAACA
1 AATATATTTAAAATTTTAAAATATATTA-AATATATTAAAATTTTAAAATTAGTTATACTTAACA
77032510 TTTTTTA
65 TTTTTTA
**
77032517 AATATATTTAATTTTTTAAAATATATTAAATATATTAAAATTTTAAAATTAGTTATA-TTAACAT
1 AATATATTTAAAATTTTAAAATATATTAAATATATTAAAATTTTAAAATTAGTTATACTTAACAT
*
77032581 TTTTTT
66 TTTTTA
*
77032587 AATATATTTAAAATTTTAATATAT-TTAA
1 AATATATTTAAAATTTTAAAATATATTAA
77032615 TTTTTTTAAG
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
69 22 0.26
70 42 0.49
71 22 0.26
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (71 bp):
AATATATTTAAAATTTTAAAATATATTAAATATATTAAAATTTTAAAATTAGTTATACTTAACAT
TTTTTA
Found at i:77032725 original size:40 final size:39
Alignment explanation
Indices: 77032669--77032754 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 39
77032659 GTTTTACCTA
*
77032669 TTAAAAATATATATTAAGTATATTAAAATTTTAAATATAC
1 TTAAAAATATATATTAAATATATTAAAATTTTAAA-ATAC
*
77032709 -TAAAATATATATATTAAATATTTTAAAATTTTAAAATAC
1 TTAAAA-ATATATATTAAATATATTAAAATTTTAAAATAC
77032748 TTAAAAA
1 TTAAAAA
77032755 AAATCACATT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
39 10 0.24
40 32 0.76
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (39 bp):
TTAAAAATATATATTAAATATATTAAAATTTTAAAATAC
Found at i:77034750 original size:33 final size:33
Alignment explanation
Indices: 77034688--77034751 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
77034678 TTAAATACAC
* *
77034688 TAAAAATATTAAAATAAATATTTTCCAACAAAG
1 TAAAAATATTAAAATAAATATTATACAACAAAG
77034721 TAAAAATACATTAAAA-AAAT-TTATACAACAA
1 TAAAAAT--ATTAAAATAAATATTATACAACAA
77034752 TAAAATAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 16 0.59
34 4 0.15
35 7 0.26
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (33 bp):
TAAAAATATTAAAATAAATATTATACAACAAAG
Found at i:77043790 original size:10 final size:9
Alignment explanation
Indices: 77043767--77043799 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
77043757 CGATTCAAGA
77043767 AAAAATAAT
1 AAAAATAAT
77043776 AAAAATAAT
1 AAAAATAAT
77043785 ATAAAATAA-
1 A-AAAATAAT
77043794 AAAAAT
1 AAAAAT
77043800 TTGATCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.22
9 11 0.48
10 7 0.30
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAATAAT
Found at i:77049240 original size:3 final size:3
Alignment explanation
Indices: 77049234--77049277 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
77049224 TTATCTCTCT
* * *
77049234 TTA TTA TT- TTA TTA TTA TTA TTA TTA TCA TCA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
77049278 AGTTGAAGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:77049964 original size:18 final size:18
Alignment explanation
Indices: 77049941--77049978 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
77049931 GGTTTATGAA
77049941 AATATTCTTTTT-TTTTTT
1 AATATT-TTTTTATTTTTT
77049959 AATATTTTTTTATTTTTT
1 AATATTTTTTTATTTTTT
77049977 AA
1 AA
77049979 AAAAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
AATATTTTTTTATTTTTT
Found at i:77054135 original size:42 final size:42
Alignment explanation
Indices: 77054074--77054198 Score: 157
Period size: 42 Copynumber: 3.0 Consensus size: 42
77054064 TCGTTTTCTA
* * *
77054074 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT-
1 GATGCCATAGTCCAGCTATGGTCTTACACATATTCACAT-ATC
* *
77054116 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATC
1 GATGCCATAGTCCAGCTATGGTCTTACACATATTCACATATC
*
77054158 GATGCCATAATCCAGCTATGGTCTTACACGA-A-TCACATATC
1 GATGCCATAGTCCAGCTATGGTCTTACAC-ATATTCACATATC
77054199 TCACTGATGC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 10 0.14
42 62 0.85
43 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
GATGCCATAGTCCAGCTATGGTCTTACACATATTCACATATC
Found at i:77054258 original size:47 final size:46
Alignment explanation
Indices: 77054157--77054280 Score: 160
Period size: 47 Copynumber: 2.7 Consensus size: 46
77054147 ATTCATATAT
* * * *
77054157 CGATGCCATAAT-CCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCAT-ATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
77054203 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
77054250 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
77054281 GAAATCACTT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 2 0.03
46 25 0.37
47 41 0.60
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:77054348 original size:31 final size:31
Alignment explanation
Indices: 77054305--77054464 Score: 248
Period size: 31 Copynumber: 5.2 Consensus size: 31
77054295 CTTGTCACTT
* *
77054305 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
77054336 GTTGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
77054367 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
77054398 GTAGTCGGAACTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
77054429 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
77054460 GTAGC
1 GTAGC
77054465 TGAAGCTGCC
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 117 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:77054470 original size:31 final size:31
Alignment explanation
Indices: 77054305--77054484 Score: 247
Period size: 31 Copynumber: 5.8 Consensus size: 31
77054295 CTTGTCACTT
*
77054305 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
77054336 GTTGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77054367 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
77054398 GTAGTCGGAA-CTACCACTTTTCACTGATCAG
1 GTAG-CCGAAGCTACCACTTTTCACTGATCAG
*
77054429 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
77054460 GTAGCTGAAGCTGCCAAC-TTTCACT
1 GTAGCCGAAGCTACC-ACTTTTCACT
77054485 TGTCAGTTGT
Statistics
Matches: 135, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
30 4 0.03
31 126 0.93
32 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:77059722 original size:108 final size:108
Alignment explanation
Indices: 77059526--77059868 Score: 605
Period size: 108 Copynumber: 3.2 Consensus size: 108
77059516 GTATAACTAT
* *
77059526 ATAAATCTCAACCTTTTGTTATTAACTATCATAATAAAAATGACGTAAACCCTAAATCGATCTAA
1 ATAAATCTCAACCTTTTGTTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAA
* *
77059591 ACTCAACACAACCTTATTTCCTACCCCATCCAACCTCTTTGTA
66 ACTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTA
* *
77059634 ATAAATCTCAACCTTTTGTTATTAACTAGCATAACAAAAATGACGTGAACCCTAACTCGATCTAA
1 ATAAATCTCAACCTTTTGTTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAA
77059699 ACTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTA
66 ACTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTA
* * *
77059742 ATAAATCTCAACCTTTTGTTATTAGCTAGCATAACAAAAATGATGTAAACCCTAAATTGATCTAA
1 ATAAATCTCAACCTTTTGTTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAA
77059807 ACTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTA
66 ACTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTA
77059850 ATAAATCTCAACCTTTTGT
1 ATAAATCTCAACCTTTTGT
77059869 GACGTAAACC
Statistics
Matches: 224, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 224 1.00
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (108 bp):
ATAAATCTCAACCTTTTGTTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAA
ACTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTA
Found at i:77060098 original size:251 final size:252
Alignment explanation
Indices: 77059635--77060119 Score: 828
Period size: 251 Copynumber: 1.9 Consensus size: 252
77059625 CTCTTTGTAA
* * * *
77059635 TAAATCTCAACCTTTTGTTATTAACTAGCATAACAAAAATGACGTGAACCCTAACTCGATCTAAA
1 TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAAA
* *
77059700 CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACCTTTTGTTATT
66 CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATT
* **
77059765 AGCTAGCATAACAAAAATGATGTAAACCCTAAATTGATCTAAACTCAACACAACCCTATTCCCTA
131 AACTAGCATAACAAAAATGATGTAAACCCTAAACCGATCTAAACTCAACACAACCCTATTCCCTA
77059830 CCCCATCCAACCTCTTTGTAATAAATCTCAACCTTTTGTGACGTAAACCCTATGAAC
196 CCCCATCCAACCTCTTTGTAATAAATCTCAACCTTTTGTGACGTAAACCCTATGAAC
* *
77059887 TAAA-CTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAATCGATTTAAA
1 TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAAA
*
77059951 CTCAACACAACCCTATTCCCTATCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATT
66 CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATT
* *
77060016 AACTAGCATAACAAAAATGATGTAAACCTTAAACCGATTTAAACTCAACACAACCCTATTCCCTA
131 AACTAGCATAACAAAAATGATGTAAACCCTAAACCGATCTAAACTCAACACAACCCTATTCCCTA
*
77060081 CCCCATCCAATCTCTTTGTAATAAATCTCAACCTTTTGT
196 CCCCATCCAACCTCTTTGTAATAAATCTCAACCTTTTGT
77060120 TATTAATTAG
Statistics
Matches: 218, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
251 214 0.98
252 4 0.02
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (252 bp):
TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCCTAAATCGATCTAAA
CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATT
AACTAGCATAACAAAAATGATGTAAACCCTAAACCGATCTAAACTCAACACAACCCTATTCCCTA
CCCCATCCAACCTCTTTGTAATAAATCTCAACCTTTTGTGACGTAAACCCTATGAAC
Found at i:77060168 original size:108 final size:108
Alignment explanation
Indices: 77059887--77060160 Score: 469
Period size: 108 Copynumber: 2.5 Consensus size: 108
77059877 CCCTATGAAC
77059887 TAAA-CTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAATCGATTTAAA
1 TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAATCGATTTAAA
*
77059951 CTCAACACAACCCTATTCCCTATCCCATCCAACCTCTTTGTAA
66 CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAA
* *
77059994 TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGATGTAAACCTTAAACCGATTTAAA
1 TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAATCGATTTAAA
*
77060059 CTCAACACAACCCTATTCCCTACCCCATCCAATCTCTTTGTAA
66 CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAA
* * * *
77060102 TAAATCTCAACCTTTTGTTATTAATTAGCATAACAAAAATGACGTAAACCCTAAATCGA
1 TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAATCGA
77060161 ACTAAACTTA
Statistics
Matches: 156, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
107 4 0.03
108 152 0.97
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.30
Consensus pattern (108 bp):
TAAATCTCAACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAATCGATTTAAA
CTCAACACAACCCTATTCCCTACCCCATCCAACCTCTTTGTAA
Found at i:77060193 original size:168 final size:168
Alignment explanation
Indices: 77060002--77060324 Score: 529
Period size: 168 Copynumber: 1.9 Consensus size: 168
77059992 AATAAATCTC
* *
77060002 AACATTTTATTATTAACTAGCATAACAAAAATGATGTAAACCTTAAACCGATTTAAACTCAACAC
1 AACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAACCAATTTAAACTCAACAC
* * * *
77060067 AACCCTATTCCCTACCCCATCCAATCTCTTTGTAATAAATCTCAACCTTTTGTTATTAATTAGCA
66 AACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATTAACTAGCA
77060132 TAACAAAAATGACGTAAACCCTAAATCGAACTAAACTT
131 TAACAAAAATGACGTAAACCCTAAATCGAACTAAACTT
* * *
77060170 AACATTTTATTATTAATTAGCATAACAAAAATGACGTAAACCTTAAATCAATTTAAACTCGACAC
1 AACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAACCAATTTAAACTCAACAC
* * *
77060235 AACCCTATTCCCTATCCCATCCAACCTTTTTGTAATAAATCTCAACATTTTATTATTAACTGGCA
66 AACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATTAACTAGCA
*
77060300 TAACAAAAATGACGTAAACCTTAAA
131 TAACAAAAATGACGTAAACCCTAAA
77060325 CCGATTTAAA
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
168 142 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (168 bp):
AACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAACCAATTTAAACTCAACAC
AACCCTATTCCCTACCCCATCCAACCTCTTTGTAATAAATCTCAACATTTTATTATTAACTAGCA
TAACAAAAATGACGTAAACCCTAAATCGAACTAAACTT
Found at i:77060305 original size:108 final size:108
Alignment explanation
Indices: 77060170--77060369 Score: 346
Period size: 108 Copynumber: 1.9 Consensus size: 108
77060160 AACTAAACTT
* * *
77060170 AACATTTTATTATTAATTAGCATAACAAAAATGACGTAAACCTTAAATCAATTTAAACTCGACAC
1 AACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAACCAATTTAAACTCAACAC
*
77060235 AACCCTATTCCCTATCCCATCCAACCTTTTTGTAATAAATCTC
66 AACCCTATTCCCTAACCCATCCAACCTTTTTGTAATAAATCTC
* *
77060278 AACATTTTATTATTAACTGGCATAACAAAAATGACGTAAACCTTAAACCGATTTAAACTCAACAC
1 AACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAACCAATTTAAACTCAACAC
77060343 AACCCTATTCCCTAACCCATCCAACCT
66 AACCCTATTCCCTAACCCATCCAACCT
77060370 CTCTGTATAT
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 86 1.00
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.29
Consensus pattern (108 bp):
AACATTTTATTATTAACTAGCATAACAAAAATGACGTAAACCTTAAACCAATTTAAACTCAACAC
AACCCTATTCCCTAACCCATCCAACCTTTTTGTAATAAATCTC
Found at i:77061929 original size:216 final size:221
Alignment explanation
Indices: 77061358--77061937 Score: 579
Period size: 215 Copynumber: 2.7 Consensus size: 221
77061348 ACATATCTAG
** * * **
77061358 TTCAACATAAAAAATTCAGTTTTTTGGACTAAAAATGATAGCTGTCATGGGTCAAAGATCTATGG
1 TTCAACATTGAAAATTCAGTCTTTTGGAC-AAAAATGATAGCTTTCATATGTCAAAGATCTATGG
* * * *
77061423 TGAATTTGAGGTGACTGATGATCTAATTGGATTTATGGAG-TTTCTCTTTCCTTAATTATTAATT
65 TGAATTTGA-G-G--TGATGATCTAATTGGATTGATGGAGTTTTC-CTTCCCTTAATGATTAATA
* * * * *
77061487 TATACAGTTCTTCTCTACTTCAGTGTAAAGGGTGTTTTGCTATCTTTCTAGATTGATTAATTAGT
125 TATACAGTTCTTCTCTACTTAAATGTAAAGGGTGTTTTGCCATCTTTCTACATTGAATAATTAGT
* * *
77061552 TATCATGTTTGGTTTCATCATCTGCTCTATGTAA
190 TATCA-GTTTGATTTCAT-ATCTGATCAATGTAA
* *
77061586 TTCAACATTGAAAATTCACTCTTTTGGACTAAAATGATAGCTTTCATATGTCAAAGATCTAT-G-
1 TTCAACATTGAAAATTCAGTCTTTTGGACAAAAATGATAGCTTTCATATGTCAAAGATCTATGGT
* * * *
77061649 G----T--GGTGATGATCTAATTGGATTGATGGTGTTTTTCTTGCCTGT-ATGATTAATATGTAC
66 GAATTTGAGGTGATGATCTAATTGGATTGATGGAGTTTTCCTTCCCT-TAATGATTAATATATAC
*
77061707 AGTTCTTCTCTACTTAAATGTAGAGGGTGTTTTGCCATCTCTTC-ACATTGAATAATTAGTT-T-
130 AGTTCTTCTCTACTTAAATGTAAAGGGTGTTTTGCCATCT-TTCTACATTGAATAATTAGTTATC
77061769 A-TTT-ATTT-AT-T-T-ATCAAAT-TACA
194 AGTTTGATTTCATATCTGATC-AATGTA-A
* * *** * *
77061792 TTGAATATTAGTTGATTCAGTCTTGTTGGACCAAAATGATAGATTTCATATGTCAAAGATCTATG
1 TTCAACATT-GAAAATTCAGTCTT-TTGGACAAAAATGATAGCTTTCATATGTCAAAGATCTATG
* *
77061857 GTGAATTTGAGGTGATGATCCAATTGGATTGATGGGGTTTTCCTTCCCTTAATGATTAATATATA
64 GTGAATTTGAGGTGATGATCTAATTGGATTGATGGAGTTTTCCTTCCCTTAATGATTAATATATA
*
77061922 TAGTTCTTCTCTACTT
129 CAGTTCTTCTCTACTT
77061938 GAGAGTTACG
Statistics
Matches: 298, Mismatches: 38, Indels: 44
0.78 0.10 0.12
Matches are distributed among these distances:
205 4 0.01
206 11 0.04
207 11 0.04
208 37 0.12
209 3 0.01
210 4 0.01
211 3 0.01
213 1 0.00
214 2 0.01
215 93 0.31
216 70 0.23
217 1 0.00
218 1 0.00
221 1 0.00
225 1 0.00
226 1 0.00
227 29 0.10
228 25 0.08
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (221 bp):
TTCAACATTGAAAATTCAGTCTTTTGGACAAAAATGATAGCTTTCATATGTCAAAGATCTATGGT
GAATTTGAGGTGATGATCTAATTGGATTGATGGAGTTTTCCTTCCCTTAATGATTAATATATACA
GTTCTTCTCTACTTAAATGTAAAGGGTGTTTTGCCATCTTTCTACATTGAATAATTAGTTATCAG
TTTGATTTCATATCTGATCAATGTAA
Found at i:77061953 original size:216 final size:221
Alignment explanation
Indices: 77061358--77061973 Score: 576
Period size: 216 Copynumber: 2.8 Consensus size: 221
77061348 ACATATCTAG
** * * **
77061358 TTCAACATAAAAAATTCAGTTTTTTGGACTAAAAATGATAGCTGTCATGGGTCAAAGATCTATGG
1 TTCAACATTGAAAATTCAGTCTTTTGGAC-AAAAATGATAGCTTTCATATGTCAAAGATCTATGG
* * * *
77061423 TGAATTTGAGGTGACTGATGATCTAATTGGATTTATGGAG-TTTCTCTTTCCTTAATTATTAATT
65 TGAATTTGA-G-G--TGATGATCTAATTGGATTGATGGAGTTTTC-CTTCCCTTAATGATTAATA
* * * * *
77061487 TATACAGTTCTTCTCTACTTCAGTGTAAAGGGTGTTTTGCTATCT-TTCTAGATTGATTAATTAG
125 TATACAGTTCTTCTCTACTT-AGAGTTAAGGGTGTTTTGCCATCTCTTCTACATTGAATAATTAG
* * *
77061551 TTATCATGTTTGGTTTCATCATCTGCTCTATGTAA
189 TTATCA-GTTTGATTTCAT-ATCTGATCAATGTAA
* *
77061586 TTCAACATTGAAAATTCACTCTTTTGGACTAAAATGATAGCTTTCATATGTCAAAGATCTAT-G-
1 TTCAACATTGAAAATTCAGTCTTTTGGACAAAAATGATAGCTTTCATATGTCAAAGATCTATGGT
* * * *
77061649 G----T--GGTGATGATCTAATTGGATTGATGGTGTTTTTCTTGCCTGT-ATGATTAATATGTAC
66 GAATTTGAGGTGATGATCTAATTGGATTGATGGAGTTTTCCTTCCCT-TAATGATTAATATATAC
*
77061707 AGTTCTTCTCTACTTA-AATGTAGAGGGTGTTTTGCCATCTCTTC-ACATTGAATAATTAGTT-T
130 AGTTCTTCTCTACTTAGAGT-TA-AGGGTGTTTTGCCATCTCTTCTACATTGAATAATTAGTTAT
77061769 -A-TTT-ATTT-AT-T-T-ATCAAAT-TACA
193 CAGTTTGATTTCATATCTGATC-AATGTA-A
* * *** * *
77061792 TTGAATATTAGTTGATTCAGTCTTGTTGGACCAAAATGATAGATTTCATATGTCAAAGATCTATG
1 TTCAACATT-GAAAATTCAGTCTT-TTGGACAAAAATGATAGCTTTCATATGTCAAAGATCTATG
* *
77061857 GTGAATTTGAGGTGATGATCCAATTGGATTGATGGGGTTTTCCTTCCCTTAATGATTAATATATA
64 GTGAATTTGAGGTGATGATCTAATTGGATTGATGGAGTTTTCCTTCCCTTAATGATTAATATATA
* * * *
77061922 TAGTTCTTCTCTACTTGAGAGTTACGGGTGTTTTTCCATCTCTT-TAGATTGA
129 CAGTTCTTCTCTACTT-AGAGTTAAGGGTGTTTTGCCATCTCTTCTACATTGA
77061974 TTAAGATATG
Statistics
Matches: 325, Mismatches: 42, Indels: 54
0.77 0.10 0.13
Matches are distributed among these distances:
205 4 0.01
206 11 0.03
207 11 0.03
208 37 0.11
209 3 0.01
210 4 0.01
211 3 0.01
213 2 0.01
214 4 0.01
215 88 0.27
216 94 0.29
217 4 0.01
218 3 0.01
221 1 0.00
225 1 0.00
226 1 0.00
227 29 0.09
228 25 0.08
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (221 bp):
TTCAACATTGAAAATTCAGTCTTTTGGACAAAAATGATAGCTTTCATATGTCAAAGATCTATGGT
GAATTTGAGGTGATGATCTAATTGGATTGATGGAGTTTTCCTTCCCTTAATGATTAATATATACA
GTTCTTCTCTACTTAGAGTTAAGGGTGTTTTGCCATCTCTTCTACATTGAATAATTAGTTATCAG
TTTGATTTCATATCTGATCAATGTAA
Found at i:77076282 original size:43 final size:43
Alignment explanation
Indices: 77076198--77076282 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
77076188 AAATTGTACA
*
77076198 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACAAATATCG
*
77076241 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACATATATC
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACAAATATC
77076283 AGAATCACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACAAATATCG
Found at i:77078875 original size:4 final size:4
Alignment explanation
Indices: 77078866--77078890 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
77078856 AGCAAACGTG
77078866 AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA A
77078891 TAGAAAAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:77080858 original size:31 final size:31
Alignment explanation
Indices: 77080823--77080886 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
77080813 CTTAATAGCC
**
77080823 CAGTGACTAAAATAAAAGTTTTTGAATAGTT
1 CAGTGACTAAAATAAAAACTTTTGAATAGTT
* *
77080854 CAGTGATTTAAATAAAAACTTTTGAATAGTT
1 CAGTGACTAAAATAAAAACTTTTGAATAGTT
77080885 CA
1 CA
77080887 ATGATCATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (31 bp):
CAGTGACTAAAATAAAAACTTTTGAATAGTT
Found at i:77081919 original size:25 final size:25
Alignment explanation
Indices: 77081891--77081938 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
77081881 AAGAACATTT
77081891 TAATTAATAATAAAGTTAAATATAA
1 TAATTAATAATAAAGTTAAATATAA
*
77081916 TAATTAATAATAAATTTAAATAT
1 TAATTAATAATAAAGTTAAATAT
77081939 GTTAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (25 bp):
TAATTAATAATAAAGTTAAATATAA
Found at i:77082432 original size:13 final size:13
Alignment explanation
Indices: 77082414--77082458 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
77082404 TAATAATTTT
77082414 TAATTTTTAAAAA
1 TAATTTTTAAAAA
*
77082427 TAATTTTT--ATA
1 TAATTTTTAAAAA
77082438 T-ATTTTTAAAAA
1 TAATTTTTAAAAA
77082450 TAATTTTTA
1 TAATTTTTA
77082459 TATATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
10 6 0.22
11 3 0.11
12 3 0.11
13 15 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATTTTTAAAAA
Found at i:77082442 original size:23 final size:23
Alignment explanation
Indices: 77082405--77082473 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
77082395 TTATATATTT
77082405 AATAA-TTTT-TA-ATTTTTAAA
1 AATAATTTTTATATATTTTTAAA
77082425 AATAATTTTTATATATTTTTAAA
1 AATAATTTTTATATATTTTTAAA
77082448 AATAATTTTTATATATTTTTAAA
1 AATAATTTTTATATATTTTTAAA
77082471 AAT
1 AAT
77082474 TAAAAAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
20 5 0.11
21 4 0.09
22 2 0.04
23 35 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
AATAATTTTTATATATTTTTAAA
Found at i:77083097 original size:6 final size:6
Alignment explanation
Indices: 77083086--77083119 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
77083076 ATAACTACTC
*
77083086 ATATTT ATATTT ATATTT ATATTT -TAATT ATATT
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATATT
77083120 ATACTTGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATATTT
Found at i:77084616 original size:14 final size:14
Alignment explanation
Indices: 77084597--77084663 Score: 80
Period size: 14 Copynumber: 4.7 Consensus size: 14
77084587 CCAAAAAAGT
77084597 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
77084611 AAATCATTTTCCAAA
1 AAATCATTTTCC-AG
* *
77084626 AAATTATTTTCCGG
1 AAATCATTTTCCAG
*
77084640 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
77084654 AAAACATTTT
1 AAATCATTTT
77084664 ACCTGCAAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 34 0.74
15 12 0.26
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:77088980 original size:20 final size:21
Alignment explanation
Indices: 77088955--77089000 Score: 78
Period size: 19 Copynumber: 2.3 Consensus size: 21
77088945 GAAAAAAAGG
77088955 TTAAAAAATATTT-AAAA-TT
1 TTAAAAAATATTTGAAAATTT
77088974 TTAAAAAATATTTGAAAATTT
1 TTAAAAAATATTTGAAAATTT
77088995 TTAAAA
1 TTAAAA
77089001 TTTATTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 13 0.52
20 4 0.16
21 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TTAAAAAATATTTGAAAATTT
Found at i:77089008 original size:10 final size:9
Alignment explanation
Indices: 77088959--77089010 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
77088949 AAAAGGTTAA
*
77088959 AAAATATTT
1 AAAATTTTT
*
77088968 AAAATTTTAA
1 AAAATTTT-T
*
77088978 AAAATATTTG
1 AAAAT-TTTT
77088988 AAAATTTTT
1 AAAATTTTT
77088997 AAAATTTATT
1 AAAATTT-TT
77089007 AAAA
1 AAAA
77089011 ACAACCCCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 17 0.47
10 16 0.44
11 3 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (9 bp):
AAAATTTTT
Found at i:77089821 original size:14 final size:15
Alignment explanation
Indices: 77089802--77089830 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77089792 TATTAGTGAA
77089802 TTTAATAA-AATAAT
1 TTTAATAATAATAAT
77089816 TTTAATAATAATAAT
1 TTTAATAATAATAAT
77089831 AATTGAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAATAATAATAAT
Found at i:77089880 original size:27 final size:28
Alignment explanation
Indices: 77089847--77089908 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 28
77089837 ACCTAAATTT
77089847 TTAAATTTTAAAAAA-ATAAAAT-AAAAA
1 TTAAATTTTAAAAAATA-AAAATAAAAAA
* *
77089874 TTAAATTTTTAATAATAAAAATAAAAAA
1 TTAAATTTTAAAAAATAAAAATAAAAAA
77089902 TTAAATT
1 TTAAATT
77089909 CCAAATGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
TTAAATTTTAAAAAATAAAAATAAAAAA
Found at i:77089884 original size:28 final size:28
Alignment explanation
Indices: 77089847--77089908 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
77089837 ACCTAAATTT
77089847 TTAAA-TTTTAAAAAAATAAAAT-AAAAA
1 TTAAATTTTTAAAAAAA-AAAATAAAAAA
* *
77089874 TTAAATTTTTAATAATAAAAATAAAAAA
1 TTAAATTTTTAAAAAAAAAAATAAAAAA
77089902 TTAAATT
1 TTAAATT
77089909 CCAAATGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 10 0.32
28 21 0.68
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
TTAAATTTTTAAAAAAAAAAATAAAAAA
Found at i:77091198 original size:31 final size:31
Alignment explanation
Indices: 77091163--77091226 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
77091153 CTTAATAGCC
*
77091163 CAATGACTAAAAT-AAAAGTTTTTGAATAGTT
1 CAATGACTAAAATGAAAA-ATTTTGAATAGTT
* *
77091194 CAATGATTTAAATGAAAAATTTTGAATAGTT
1 CAATGACTAAAATGAAAAATTTTGAATAGTT
77091225 CA
1 CA
77091227 GGGATCAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.36
Consensus pattern (31 bp):
CAATGACTAAAATGAAAAATTTTGAATAGTT
Found at i:77095933 original size:31 final size:31
Alignment explanation
Indices: 77095852--77095922 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
77095842 CCTAAAGCGG
* * **
77095852 GAACAGTTGCCTAATCTAGGTCCCCGTGTAA
1 GAACAATTGCCTAATTTAGGTCCCAATGTAA
*
77095883 GAACAATTGCCTAATTTAGGTCCCAATGTGA
1 GAACAATTGCCTAATTTAGGTCCCAATGTAA
77095914 GAACAATTG
1 GAACAATTG
77095923 TCAAGTTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (31 bp):
GAACAATTGCCTAATTTAGGTCCCAATGTAA
Found at i:77100300 original size:40 final size:40
Alignment explanation
Indices: 77100253--77100330 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
77100243 TCACACCATG
* * *
77100253 TGGGGATAAAATTGACCCACCCATCCCTGCACACCATATA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCATATA
* *
77100293 TGGGGATATAATCGACCCATCCAACCCTACACACCATA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCATA
77100331 AGGTACCACA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.33, G:0.14, T:0.19
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAACCCTACACACCATATA
Found at i:77101750 original size:16 final size:16
Alignment explanation
Indices: 77101731--77101764 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
77101721 AAATAAGTGT
77101731 TGTAATAGTTCTTCAA
1 TGTAATAGTTCTTCAA
*
77101747 TGTAATATTTCTTCAA
1 TGTAATAGTTCTTCAA
77101763 TG
1 TG
77101765 AAACAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (16 bp):
TGTAATAGTTCTTCAA
Found at i:77101833 original size:18 final size:18
Alignment explanation
Indices: 77101810--77101845 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
77101800 GAGCAATAGA
*
77101810 GGAGCCACAAAATTAGTT
1 GGAGCCAAAAAATTAGTT
77101828 GGAGCCAAAAAATTAGTT
1 GGAGCCAAAAAATTAGTT
77101846 ATGTACTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (18 bp):
GGAGCCAAAAAATTAGTT
Found at i:77106698 original size:36 final size:33
Alignment explanation
Indices: 77106649--77106716 Score: 84
Period size: 36 Copynumber: 2.0 Consensus size: 33
77106639 TTATAGCATG
77106649 AAATTAATAATGTATGAAAAATTTTAAAAAATATAT
1 AAATTAATAATGTA--AAAAATTTT-AAAAATATAT
*
77106685 AAATT-ATACATGTAACAAATTTTAAAAATATA
1 AAATTAATA-ATGTAAAAAATTTTAAAAATATA
77106717 ATCATGTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 9 0.30
34 8 0.27
35 3 0.10
36 10 0.33
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (33 bp):
AAATTAATAATGTAAAAAATTTTAAAAATATAT
Found at i:77108053 original size:26 final size:26
Alignment explanation
Indices: 77108014--77108095 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
77108004 TGATACAAAT
* *
77108014 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
77108040 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77108066 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77108092 TGAT
1 TGAT
77108096 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:77113464 original size:76 final size:73
Alignment explanation
Indices: 77113357--77113603 Score: 234
Period size: 76 Copynumber: 3.3 Consensus size: 73
77113347 AAATCTACTA
* ** *
77113357 TCGGTTTATCTGTTTAGCGCTGGGT-TCAAATCTTTGTCGGTTAATTCAGCTAGTGTTGGGCACA
1 TCGGTTTATTTGACTAGCGCTGAGTGT-AAATCTTTGTCGGTTAATTC-GCTAGTGTTGGG-ACA
77113421 CATTTAATATCG
63 CATTTAATAT-G
*
77113433 TCGGTTTATTTGACTAGCGCTGAGTGTAAATCTTTGTCGGTTAATTTGGCTAGTGTTGGGAACAC
1 TCGGTTTATTTGACTAGCGCTGAGTGTAAATCTTTGTCGGTTAA-TTCGCTAGTGTTGGG-ACAC
*
77113498 ATTTAATATTT
64 ATTTAATA-TG
* * * * * * * *
77113509 TCGGTTTATTCGACTAGC-TTTAGATGCAAACCTTTGTCGATTTATTCGACTAGTGTAGGG-CAC
1 TCGGTTTATTTGACTAGCGCTGAG-TGTAAATCTTTGTCGGTTAATTCG-CTAGTGTTGGGACAC
*
77113572 ATCT-AT-TG
64 ATTTAATATG
*
77113580 TCGGTTTACTTGACTAGCGCTGAG
1 TCGGTTTATTTGACTAGCGCTGAG
77113604 CACAAATCTT
Statistics
Matches: 143, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
71 17 0.12
72 3 0.02
73 2 0.01
74 6 0.04
75 6 0.04
76 105 0.73
77 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.39
Consensus pattern (73 bp):
TCGGTTTATTTGACTAGCGCTGAGTGTAAATCTTTGTCGGTTAATTCGCTAGTGTTGGGACACAT
TTAATATG
Found at i:77113595 original size:35 final size:35
Alignment explanation
Indices: 77113542--77113659 Score: 107
Period size: 35 Copynumber: 3.3 Consensus size: 35
77113532 ATGCAAACCT
77113542 TTGTCGATTTA-TTCGACTAGTGTAGGGCACATCTA
1 TTGTCGATTTACTT-GACTAGTGTAGGGCACATCTA
* * *
77113577 TTGTCGGTTTACTTGACTAGCGCT-GAGCACAAATCT-
1 TTGTCGATTTACTTGACTAGTG-TAGGGCAC--ATCTA
* * * *
77113613 TTATCGATTTATTTGACTAGTGCAAGGCACATCTA
1 TTGTCGATTTACTTGACTAGTGTAGGGCACATCTA
*
77113648 TTGTCGGTTTAC
1 TTGTCGATTTAC
77113660 CCAACTAGTA
Statistics
Matches: 64, Mismatches: 13, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
34 4 0.06
35 31 0.48
36 25 0.39
37 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (35 bp):
TTGTCGATTTACTTGACTAGTGTAGGGCACATCTA
Found at i:77113620 original size:71 final size:71
Alignment explanation
Indices: 77113534--77113892 Score: 504
Period size: 71 Copynumber: 5.1 Consensus size: 71
77113524 AGCTTTAGAT
* * * * * * **
77113534 GCAAACCTTTGTCGATTTATTCGACTAGTGTAGGGCACATCTATTGTCGGTTTACTTGACTAGCG
1 GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCGGTTTACCCGACTAGCG
*
77113599 CTGAGC
66 CTGGGC
* * * * * **
77113605 ACAAATCTTTATCGATTTATTTGACTAGTGCAAGGCACATCTATTGTCGGTTTACCCAACTAGTA
1 GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCGGTTTACCCGACTAGCG
77113670 CTGGGC
66 CTGGGC
* * *
77113676 GCAAATCTTTATCCATTTATTTGATTAGTGCAGGGCACATCTACTATCGGTTTACCCGACTAGCG
1 GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCGGTTTACCCGACTAGCG
77113741 CTGGGC
66 CTGGGC
* * *
77113747 GTAAATCTTTATCAATTTATTTGATTAGTGCAGGGCACATCTACTATCGGTTTACCCGACTAGCG
1 GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCGGTTTACCCGACTAGCG
77113812 CTGGGC
66 CTGGGC
*
77113818 GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCAGTTTA-CCGACTAGCG
1 GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCGGTTTACCCGACTAGCG
77113882 CTGGGC
66 CTGGGC
77113888 GCAAA
1 GCAAA
77113893 AATTTGTTAC
Statistics
Matches: 261, Mismatches: 27, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
70 21 0.08
71 240 0.92
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (71 bp):
GCAAATCTTTATCAATTTATTTGACTAGTGCAGGGCACATCTACTGTCGGTTTACCCGACTAGCG
CTGGGC
Found at i:77118452 original size:25 final size:23
Alignment explanation
Indices: 77118416--77118471 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
77118406 TTAACCCTAC
77118416 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
77118441 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
77118464 -TTTATTAT
1 TTTTATTAT
77118472 CTATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:77118607 original size:23 final size:24
Alignment explanation
Indices: 77118581--77118657 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 24
77118571 TGTTTTTACA
77118581 TATATACTTT-TATTATCTTATAT
1 TATATACTTTATATTATCTTATAT
*
77118604 TATAT-CTATTATATT-TCTTATTT
1 TATATACT-TTATATTATCTTATAT
* * *
77118627 CCTATATA-TTTAAATTATATTTTAT
1 --TATATACTTTATATTATCTTATAT
77118652 TATATA
1 TATATA
77118658 ACGTTTATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
22 2 0.05
23 20 0.47
24 10 0.23
25 11 0.26
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (24 bp):
TATATACTTTATATTATCTTATAT
Found at i:77119199 original size:30 final size:29
Alignment explanation
Indices: 77119163--77119233 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
77119153 TGTATTATTC
*
77119163 TTTTTGTATGTCATGCATTATTTTATTACT
1 TTTTTGTATGTCATGCATTATTTAATTA-T
* *
77119193 TTTTTGTATATCATGTATTATTTAATTAT
1 TTTTTGTATGTCATGCATTATTTAATTAT
*
77119222 TAATTTGTATGT
1 T-TTTTGTATGT
77119234 TTGTACGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 2 0.06
30 33 0.94
ACGTcount: A:0.24, C:0.06, G:0.10, T:0.61
Consensus pattern (29 bp):
TTTTTGTATGTCATGCATTATTTAATTAT
Found at i:77121850 original size:9 final size:9
Alignment explanation
Indices: 77121838--77121867 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
77121828 ATGAAAGTTG
77121838 AGAAAGAAA
1 AGAAAGAAA
77121847 AGAAAGAAA
1 AGAAAGAAA
77121856 AGAAAGAAA
1 AGAAAGAAA
77121865 AGA
1 AGA
77121868 GGAAGATCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AGAAAGAAA
Found at i:77122558 original size:15 final size:15
Alignment explanation
Indices: 77122522--77122571 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
77122512 CGATATTCTT
77122522 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
77122536 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
77122552 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
77122565 TTTGCAT
1 TTTGCAT
77122572 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:77132626 original size:25 final size:23
Alignment explanation
Indices: 77132590--77132645 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
77132580 TTAACCCTAC
77132590 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
77132615 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
77132638 -TTTATTAT
1 TTTTATTAT
77132646 CTATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:77133398 original size:33 final size:31
Alignment explanation
Indices: 77133326--77133398 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
77133316 ATTGATATTG
*
77133326 TATTATT-C-TTTTTGTATGTCATGCATTAT
1 TATTATTACTTTTTTGTATATCATGCATTAT
*
77133355 T-TTATTACTTTTTTGTATATCATGTATTATT
1 TATTATTACTTTTTTGTATATCATGCATTA-T
77133386 TAATTATTACTTT
1 T-ATTATTACTTT
77133399 GTATGTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
28 5 0.14
29 2 0.05
30 18 0.49
31 2 0.05
33 10 0.27
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.62
Consensus pattern (31 bp):
TATTATTACTTTTTTGTATATCATGCATTAT
Found at i:77135917 original size:27 final size:23
Alignment explanation
Indices: 77135856--77135922 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
77135846 TTAGTATTTA
77135856 ATTAATTTTTTAAATTTAAAAAT
1 ATTAATTTTTTAAATTTAAAAAT
77135879 ATTAATTCTTTTTATATATTTTAAATAAT
1 ATTAA-T-TTTTTA-A-A-TTTAAA-AAT
* *
77135908 TTTAATTTTTAAAAT
1 ATTAATTTTTTAAAT
77135923 GTTTTTATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
23 5 0.14
24 2 0.06
25 7 0.19
26 2 0.06
27 6 0.17
28 7 0.19
29 7 0.19
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTAATTTTTTAAATTTAAAAAT
Found at i:77139131 original size:29 final size:28
Alignment explanation
Indices: 77139085--77139142 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
77139075 CCGAACATAT
77139085 TATGTTATAAAAATATTATATTAATTATA
1 TATGTTATAAAAATATTATA-TAATTATA
* *
77139114 TATGTTA-AATAATAATTATATATTTATA
1 TATGTTATAAAAAT-ATTATATAATTATA
77139142 T
1 T
77139143 TTATATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (28 bp):
TATGTTATAAAAATATTATATAATTATA
Found at i:77145930 original size:21 final size:20
Alignment explanation
Indices: 77145904--77145947 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
77145894 AACAAAAATT
77145904 TAAACCATATTTATATATATA
1 TAAACCATATTTATA-ATATA
*
77145925 TAAACCATATTTATAATTTA
1 TAAACCATATTTATAATATA
77145945 TAA
1 TAA
77145948 TTTATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAACCATATTTATAATATA
Found at i:77162547 original size:13 final size:13
Alignment explanation
Indices: 77162529--77162553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77162519 TGTCTCGCAG
77162529 TGATTCCAGGCCA
1 TGATTCCAGGCCA
77162542 TGATTCCAGGCC
1 TGATTCCAGGCC
77162554 TCGAATCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (13 bp):
TGATTCCAGGCCA
Found at i:77163750 original size:11 final size:11
Alignment explanation
Indices: 77163731--77163784 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 11
77163721 TTTTATGTAT
*
77163731 TATACATTTTA
1 TATATATTTTA
77163742 TATATATTTT-
1 TATATATTTTA
77163752 TAT-TATTTTA
1 TATATATTTTA
*
77163762 TAT-TATTATA
1 TATATATTTTA
*
77163772 CATATATTATTA
1 TATATATT-TTA
77163784 T
1 T
77163785 CCTTAACTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
9 6 0.17
10 14 0.40
11 13 0.37
12 2 0.06
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (11 bp):
TATATATTTTA
Found at i:77163753 original size:28 final size:27
Alignment explanation
Indices: 77163689--77163784 Score: 72
Period size: 28 Copynumber: 3.4 Consensus size: 27
77163679 AAAATTGTTT
*
77163689 TATTTTTATATAATATTAC-TTTTCATATA
1 TATTTTTAT-TATTA-TACATTTT-ATATA
77163718 T-TATTTTATGTATTATACATTTTATATA
1 TAT-TTTTAT-TATTATACATTTTATATA
* * *
77163746 TATTTTTATTATTTTATATTATTATACA
1 TATTTTTATTATTATACATT-TTATATA
*
77163774 TA-TATTATTAT
1 TATTTTTATTAT
77163785 CCTTAACTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
27 17 0.30
28 24 0.42
29 16 0.28
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (27 bp):
TATTTTTATTATTATACATTTTATATA
Found at i:77167730 original size:24 final size:24
Alignment explanation
Indices: 77167698--77167744 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
77167688 AAAAATTCTA
*
77167698 TTTTCTTGTTGTT-TTACTATTTTT
1 TTTTCTTGTT-TTCTCACTATTTTT
*
77167722 TTTTGTTGTTTTCTCACTATTTT
1 TTTTCTTGTTTTCTCACTATTTT
77167745 GCTACTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.09, C:0.11, G:0.09, T:0.72
Consensus pattern (24 bp):
TTTTCTTGTTTTCTCACTATTTTT
Found at i:77167744 original size:21 final size:22
Alignment explanation
Indices: 77167695--77167744 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
77167685 AAAAAAAATT
77167695 CTATTTTCTTGTTGTTTTACTA
1 CTATTTTCTTGTTGTTTTACTA
* *
77167717 -TTTTTTTTTGTTGTTTT-CTCA
1 CTATTTTCTTGTTGTTTTACT-A
77167738 CTATTTT
1 CTATTTT
77167745 GCTACTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.09
21 16 0.70
22 5 0.22
ACGTcount: A:0.10, C:0.12, G:0.08, T:0.70
Consensus pattern (22 bp):
CTATTTTCTTGTTGTTTTACTA
Found at i:77168473 original size:12 final size:12
Alignment explanation
Indices: 77168456--77168480 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77168446 TGTTTACAAA
77168456 ATTTATCATTTT
1 ATTTATCATTTT
77168468 ATTTATCATTTT
1 ATTTATCATTTT
77168480 A
1 A
77168481 GTTCTAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (12 bp):
ATTTATCATTTT
Found at i:77169961 original size:14 final size:14
Alignment explanation
Indices: 77169942--77169968 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77169932 AATAGAAAGT
77169942 TGAAATGCAATTCC
1 TGAAATGCAATTCC
77169956 TGAAATGCAATTC
1 TGAAATGCAATTC
77169969 TAAGAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (14 bp):
TGAAATGCAATTCC
Found at i:77176833 original size:12 final size:12
Alignment explanation
Indices: 77176818--77176929 Score: 51
Period size: 12 Copynumber: 9.3 Consensus size: 12
77176808 CAATAGTGAA
*
77176818 AATAATAAGTAT
1 AATAATAAATAT
77176830 AATAATAAATAT
1 AATAATAAATAT
*
77176842 AATGAT--ATAT
1 AATAATAAATAT
*
77176852 AAAAATAATACTAT
1 AATAATAA-A-TAT
77176866 ATATAA-AAAGTAT
1 A-ATAATAAA-TAT
* *
77176879 -ATATATACATGT
1 AATA-ATAAATAT
77176891 -ATAATAAGATAT
1 AATAATAA-ATAT
77176903 ACACTAAT--AT-T
1 A-A-TAATAAATAT
77176914 AATAATAAATAT
1 AATAATAAATAT
77176926 AATA
1 AATA
77176930 GGGGTAAAAA
Statistics
Matches: 76, Mismatches: 10, Indels: 28
0.67 0.09 0.25
Matches are distributed among these distances:
9 4 0.05
10 9 0.12
11 10 0.13
12 32 0.42
13 7 0.09
14 7 0.09
15 7 0.09
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:77176857 original size:18 final size:17
Alignment explanation
Indices: 77176816--77176885 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 17
77176806 AACAATAGTG
77176816 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
77176834 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
*
77176853 AAAATAATACTATATATA
1 AAAAT-ATAATATATATA
77176871 AAAAGTAT-ATATATA
1 AAAA-TATAATATATA
77176886 CATGTATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
17 7 0.16
18 25 0.56
19 13 0.29
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:77180029 original size:20 final size:20
Alignment explanation
Indices: 77180001--77180045 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
77179991 CTGTTTAATT
77180001 ATGGG-CCAACTATATTAAA
1 ATGGGCCCAACTATATTAAA
* * *
77180020 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTATATTAAA
77180040 ATGGGC
1 ATGGGC
77180046 AAGACCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTATATTAAA
Found at i:77184016 original size:26 final size:26
Alignment explanation
Indices: 77183985--77184092 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
77183975 TGAAATGCCC
*
77183985 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
77184011 ATCATGGAACATTTACCTAGCCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
77184037 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
77184063 ATAATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77184089 ATCA
1 ATCA
77184093 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77184495 original size:9 final size:9
Alignment explanation
Indices: 77184481--77184506 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
77184471 CATATACTAA
77184481 TAATAATAG
1 TAATAATAG
77184490 TAATAATAG
1 TAATAATAG
77184499 TAATAATA
1 TAATAATA
77184507 AAAGATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (9 bp):
TAATAATAG
Found at i:77185497 original size:3 final size:3
Alignment explanation
Indices: 77185489--77185734 Score: 67
Period size: 3 Copynumber: 84.3 Consensus size: 3
77185479 AATAGTGTAT
* **
77185489 ATA ATA ATA ATA ATA CTA ATA ATA AT- ATA ATA ATA GCA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
77185536 AGA TATA AAA AGA A-A CA-A AT- ATA AT- ATA ATA ATA ATG TTA AAA
1 ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
77185579 ATA GAGTA ATAA ATA TTA ATA GAGA A-A GTA ACA A-A GATA ATA GTA
1 ATA -A-TA AT-A ATA ATA ATA -ATA ATA ATA ATA ATA -ATA ATA ATA
* * * * * * *
77185624 AT- ATG ATA GTA A-A A-A AT- GTA ATA TTA AAA AAA ATA ATA CTA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
77185667 TATA CATA ATA ATA AT- ATA A-A ATA ATA ATG ATA ATA GTA ATA AT-
1 -ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
77185711 ATA A-A A-A ATA ACA ATA TATA ATA A
1 ATA ATA ATA ATA ATA ATA -ATA ATA A
77185735 AAACTTAATC
Statistics
Matches: 178, Mismatches: 42, Indels: 46
0.67 0.16 0.17
Matches are distributed among these distances:
2 28 0.16
3 131 0.74
4 17 0.10
5 2 0.01
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:77185516 original size:26 final size:25
Alignment explanation
Indices: 77185487--77185570 Score: 86
Period size: 23 Copynumber: 3.5 Consensus size: 25
77185477 CTAATAGTGT
*
77185487 ATATAATAATAATAATACTAATAATA
1 ATATAATAATAAGAA-ACTAATAATA
*
77185513 ATATAATAAT-AGCAA-TAATAATA
1 ATATAATAATAAGAAACTAATAATA
* * *
77185536 AGAT-ATAAAAAGAAACAAAT-ATA
1 ATATAATAATAAGAAACTAATAATA
77185559 ATATAATAATAA
1 ATATAATAATAA
77185571 TGTTAAAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
22 4 0.09
23 21 0.45
24 10 0.21
25 2 0.04
26 10 0.21
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (25 bp):
ATATAATAATAAGAAACTAATAATA
Found at i:77185680 original size:22 final size:19
Alignment explanation
Indices: 77185655--77185702 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
77185645 TATTAAAAAA
77185655 AATAATACTAAATATACATAAT
1 AATAATA-TAAA-ATA-ATAAT
77185677 AATAATATAAAATAATAAT
1 AATAATATAAAATAATAAT
*
77185696 GATAATA
1 AATAATA
77185703 GTAATAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 11 0.44
20 3 0.12
21 4 0.16
22 7 0.28
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (19 bp):
AATAATATAAAATAATAAT
Found at i:77187249 original size:23 final size:25
Alignment explanation
Indices: 77187214--77187260 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
77187204 ACTATTAATA
77187214 ATATTACATAAATATATACATATAT
1 ATATTACATAAATATATACATATAT
*
77187239 ATATTA-A-AAATATATGCATATA
1 ATATTACATAAATATATACATATA
77187261 ATAAAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 1 0.05
25 6 0.29
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.38
Consensus pattern (25 bp):
ATATTACATAAATATATACATATAT
Found at i:77189006 original size:15 final size:15
Alignment explanation
Indices: 77188986--77189041 Score: 89
Period size: 14 Copynumber: 3.9 Consensus size: 15
77188976 CGATGAATTT
77188986 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
77189001 ATTGAAATTAT-TTG
1 ATTGAATTTATATTG
77189015 ATTGAATTTATATTG
1 ATTGAATTTATATTG
77189030 ATTGAA-TTATAT
1 ATTGAATTTATAT
77189042 AATATACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 19 0.50
15 19 0.50
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:77189018 original size:29 final size:27
Alignment explanation
Indices: 77188982--77189039 Score: 98
Period size: 29 Copynumber: 2.1 Consensus size: 27
77188972 TATGCGATGA
77188982 ATTTATTGAATTTATATTGATTGAAATT
1 ATTTATTGAATTTATATTGATTG-AATT
77189010 ATTTGATTGAATTTATATTGATTGAATT
1 ATTT-ATTGAATTTATATTGATTGAATT
77189038 AT
1 AT
77189040 ATAATATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 10 0.34
29 19 0.66
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (27 bp):
ATTTATTGAATTTATATTGATTGAATT
Found at i:77189443 original size:23 final size:23
Alignment explanation
Indices: 77189413--77189520 Score: 120
Period size: 21 Copynumber: 5.0 Consensus size: 23
77189403 GCTTTATCGA
77189413 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
77189436 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACTTTATGTGTCGTATT
* **
77189457 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
77189479 T-AGGCACTTTATGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
77189500 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
77189521 ACTGATCAGG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
21 56 0.74
22 2 0.03
23 18 0.24
ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:77191564 original size:23 final size:23
Alignment explanation
Indices: 77191461--77191568 Score: 120
Period size: 21 Copynumber: 5.0 Consensus size: 23
77191451 CCTGATCAGT
77191461 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
77191483 A-ACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
77191504 A-ACGACACACGAGGTGCCTG--
1 ATACGACACATAAAGTGCCTGAA
** *
77191524 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
77191547 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
77191569 TCGATAAAGC
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
20 1 0.01
21 55 0.72
22 1 0.01
23 19 0.25
ACGTcount: A:0.40, C:0.25, G:0.20, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:77191964 original size:15 final size:15
Alignment explanation
Indices: 77191939--77191995 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
77191929 TCATGTATAT
77191939 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
77191955 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
77191970 -ATAATTTCAATCAA
1 TATAAATTCAATCAA
77191984 TATAAATTCAAT
1 TATAAATTCAAT
77191996 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 13 0.34
15 21 0.55
16 4 0.11
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:77191980 original size:29 final size:27
Alignment explanation
Indices: 77191942--77191999 Score: 98
Period size: 29 Copynumber: 2.1 Consensus size: 27
77191932 TGTATATTAT
77191942 ATAATTCAATCAATATAAATTCAATCAA
1 ATAATTCAATCAATATAAATTCAAT-AA
77191970 ATAATTTCAATCAATATAAATTCAATAA
1 ATAA-TTCAATCAATATAAATTCAATAA
77191998 AT
1 AT
77192000 TCATCGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (27 bp):
ATAATTCAATCAATATAAATTCAATAA
Found at i:77193781 original size:23 final size:22
Alignment explanation
Indices: 77193751--77193798 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
77193741 TATATATATG
77193751 TATTAAAAATAAATACATAATAA
1 TATTAAAAATAAATACATAA-AA
* **
77193774 TATTAAAAGTATGTACATAAAA
1 TATTAAAAATAAATACATAAAA
77193796 TAT
1 TAT
77193799 ATACATATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (22 bp):
TATTAAAAATAAATACATAAAA
Found at i:77193881 original size:36 final size:38
Alignment explanation
Indices: 77193843--77193915 Score: 116
Period size: 36 Copynumber: 2.0 Consensus size: 38
77193833 AATACATGTA
77193843 AAAAT-ATATACATAATAT-ATA-AAATATATATATAT
1 AAAATAATATACATAATATAATATAAATATATATATAT
*
77193878 AAAATAATATACATAATATAATATTAATATATATATAT
1 AAAATAATATACATAATATAATATAAATATATATATAT
77193916 GCGTAATATG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 5 0.15
36 13 0.38
37 3 0.09
38 13 0.38
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (38 bp):
AAAATAATATACATAATATAATATAAATATATATATAT
Found at i:77193893 original size:14 final size:14
Alignment explanation
Indices: 77193861--77193901 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
77193851 TACATAATAT
*
77193861 ATAAAATATATATAT
1 ATAAAATA-ATATAC
77193876 ATAAAATAATATAC
1 ATAAAATAATATAC
*
77193890 ATAATATAATAT
1 ATAAAATAATAT
77193902 TAATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAAATAATATAC
Found at i:77193907 original size:20 final size:19
Alignment explanation
Indices: 77193848--77193908 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 19
77193838 ATGTAAAAAT
*
77193848 ATATACATAATAT-ATAAA
1 ATATACATAATATAATATA
* *
77193866 ATATATAT-ATATAAAATA
1 ATATACATAATATAATATA
77193884 ATATACATAATATAATATTA
1 ATATACATAATATAATA-TA
77193904 ATATA
1 ATATA
77193909 TATATATGCG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 4 0.11
18 17 0.49
19 7 0.20
20 7 0.20
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATACATAATATAATATA
Found at i:77193915 original size:14 final size:12
Alignment explanation
Indices: 77193846--77193912 Score: 68
Period size: 13 Copynumber: 5.6 Consensus size: 12
77193836 ACATGTAAAA
77193846 ATATATACATAAT
1 ATATATA-ATAAT
*
77193859 ATATAAAATATAT
1 ATATATAATA-AT
77193872 ATATATAA-AAT
1 ATATATAATAAT
77193883 A-ATATACATAAT
1 ATATATA-ATAAT
*
77193895 ATA-ATATTAAT
1 ATATATAATAAT
77193906 ATATATA
1 ATATATA
77193913 TATGCGTAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
10 5 0.11
11 11 0.24
12 14 0.30
13 16 0.35
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:77194075 original size:16 final size:17
Alignment explanation
Indices: 77194056--77194093 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
77194046 AATAATGCTA
77194056 ATAATAAAT-ATAAAAT
1 ATAATAAATAATAAAAT
*
77194072 ATAAT-AGTAATAAAAT
1 ATAATAAATAATAAAAT
77194088 ATAATA
1 ATAATA
77194094 GTATACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAATAAATAATAAAAT
Found at i:77194094 original size:16 final size:16
Alignment explanation
Indices: 77194065--77194096 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
77194055 AATAATAAAT
77194065 ATAAAATATAATAGTA
1 ATAAAATATAATAGTA
77194081 ATAAAATATAATAGTA
1 ATAAAATATAATAGTA
77194097 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
ATAAAATATAATAGTA
Found at i:77196868 original size:6 final size:6
Alignment explanation
Indices: 77196852--77196913 Score: 88
Period size: 6 Copynumber: 10.2 Consensus size: 6
77196842 TAGTTTTCTC
* * *
77196852 AAAATA AAAATG GAAATG GAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
77196900 AAAATG AGAAATG A
1 AAAATG A-AAATG A
77196914 TTCATTTGCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 46 0.88
7 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:77199867 original size:15 final size:15
Alignment explanation
Indices: 77199847--77199880 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
77199837 GGCGGTTGTT
77199847 TCTTTCCCGCCAAAA
1 TCTTTCCCGCCAAAA
77199862 TCTTTCCCGCCAAAA
1 TCTTTCCCGCCAAAA
77199877 TCTT
1 TCTT
77199881 GTCCACTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.38, G:0.06, T:0.32
Consensus pattern (15 bp):
TCTTTCCCGCCAAAA
Found at i:77203957 original size:30 final size:31
Alignment explanation
Indices: 77203890--77203967 Score: 97
Period size: 30 Copynumber: 2.5 Consensus size: 31
77203880 TTGGGATGAA
77203890 ATTAAATTATATATTTTTATAATTTTTAAATG
1 ATTAAATTATA-ATTTTTATAATTTTTAAATG
*
77203922 ATTAAATTA-AATTTTTATTATTTTTAGAA-G
1 ATTAAATTATAATTTTTATAATTTTTA-AATG
* *
77203952 GTTAAAATATAATTTT
1 ATTAAATTATAATTTT
77203968 ACTATTACTA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
30 23 0.56
31 9 0.22
32 9 0.22
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (31 bp):
ATTAAATTATAATTTTTATAATTTTTAAATG
Found at i:77204768 original size:6 final size:6
Alignment explanation
Indices: 77204757--77204790 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
77204747 TTGAACCAAG
77204757 ATTTTT ATTTTT ATTTTT ATTTTTTT ATTTTT AT
1 ATTTTT ATTTTT ATTTTT A--TTTTT ATTTTT AT
77204791 GAATTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.77
8 6 0.23
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
ATTTTT
Done.