Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 239 of 253
Found at i:77472104 original size:18 final size:18
Alignment explanation
Indices: 77472032--77472104 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
77472022 CTCGAAAAGT
*
77472032 TAAAAAAATGTA-ATCAAA
1 TAAAAAAATGCATA-CAAA
*
77472050 TAAAATAATGCATACAAA
1 TAAAAAAATGCATACAAA
*
77472068 CTAAAAAAATGTA-ATCAAA
1 -TAAAAAAATGCATA-CAAA
*
77472087 TAAAACAATGCATACAAA
1 TAAAAAAATGCATACAAA
77472105 CAATTAATAC
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
18 29 0.64
19 16 0.36
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (18 bp):
TAAAAAAATGCATACAAA
Found at i:77476159 original size:13 final size:13
Alignment explanation
Indices: 77476117--77476183 Score: 82
Period size: 13 Copynumber: 5.2 Consensus size: 13
77476107 AACATTTAAA
77476117 ATTTTT-AAAAGT
1 ATTTTTCAAAAGT
*
77476129 ATTTCTCAAAAGT
1 ATTTTTCAAAAGT
77476142 ATTTTTCAAAAGT
1 ATTTTTCAAAAGT
** *
77476155 ATTTTTTTACAGT
1 ATTTTTCAAAAGT
*
77476168 ACTTTTCAAAAGT
1 ATTTTTCAAAAGT
77476181 ATT
1 ATT
77476184 GACAAACACA
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
12 5 0.11
13 39 0.89
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTTTTCAAAAGT
Found at i:77477718 original size:14 final size:14
Alignment explanation
Indices: 77477701--77477731 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
77477691 TATAATATCT
77477701 AAATAATAACAACA
1 AAATAATAACAACA
*
77477715 AAATAGTAACAACA
1 AAATAATAACAACA
77477729 AAA
1 AAA
77477732 CTGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (14 bp):
AAATAATAACAACA
Found at i:77483886 original size:19 final size:19
Alignment explanation
Indices: 77483842--77483891 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
77483832 TTTTATTTAT
*
77483842 TTATTTTATTTTGTTAGTTA
1 TTATTTTA-TTTCTTAGTTA
* *
77483862 TTATTTTATTTCTTATTTG
1 TTATTTTATTTCTTAGTTA
*
77483881 TTATTTCATTT
1 TTATTTTATTT
77483892 TAAGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.18, C:0.04, G:0.06, T:0.72
Consensus pattern (19 bp):
TTATTTTATTTCTTAGTTA
Found at i:77496935 original size:78 final size:78
Alignment explanation
Indices: 77496805--77497013 Score: 391
Period size: 78 Copynumber: 2.7 Consensus size: 78
77496795 CTAACACCAA
*
77496805 TAATTATGAATGATTGATAAGAAATTGACCCTTCACTTTAAATGGTGGTGCATAGTATGACTTGT
1 TAATTATGGATGATTG-TAAGAAATTGACCCTTCACTTTAAATGGTGGTGCATAGTATGACTTGT
*
77496870 AGTACATCTTATTC
65 AGTACATATTATTC
77496884 TAATTATGGATGATTGTAAGAAATTGACCCTTCACTTTAAATGGTGGTGCATAGTATGACTTGTA
1 TAATTATGGATGATTGTAAGAAATTGACCCTTCACTTTAAATGGTGGTGCATAGTATGACTTGTA
77496949 GTACATATTATTC
66 GTACATATTATTC
77496962 TAATTATGGATGATTGTAAGAAATTGACCCTTCACTTTAAATGGTGGTGCAT
1 TAATTATGGATGATTGTAAGAAATTGACCCTTCACTTTAAATGGTGGTGCAT
77497014 GGTGCGACTC
Statistics
Matches: 128, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
78 113 0.88
79 15 0.12
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (78 bp):
TAATTATGGATGATTGTAAGAAATTGACCCTTCACTTTAAATGGTGGTGCATAGTATGACTTGTA
GTACATATTATTC
Found at i:77497616 original size:18 final size:18
Alignment explanation
Indices: 77497593--77497630 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
77497583 ATGTCGGAAG
77497593 TTAGGTTTCAAAATATGT
1 TTAGGTTTCAAAATATGT
77497611 TTAGGTTTCAAAATATGT
1 TTAGGTTTCAAAATATGT
77497629 TT
1 TT
77497631 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.47
Consensus pattern (18 bp):
TTAGGTTTCAAAATATGT
Found at i:77498723 original size:15 final size:16
Alignment explanation
Indices: 77498698--77498731 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
77498688 TAAAAATTAT
77498698 TTTATTATTTTAATAA
1 TTTATTATTTTAATAA
*
77498714 TTTA-TATTTTTATAA
1 TTTATTATTTTAATAA
77498729 TTT
1 TTT
77498732 TTAAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTATTTTAATAA
Found at i:77498984 original size:18 final size:18
Alignment explanation
Indices: 77498962--77499004 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 18
77498952 TTTTTTATTT
77498962 TATATATATATTTTAAAAAA
1 TATA-ATAT-TTTTAAAAAA
77498982 TATGAATATTTTTAAAAAA
1 TAT-AATATTTTTAAAAAA
77499001 TATA
1 TATA
77499005 CATTGATGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 1 0.05
19 13 0.59
20 7 0.32
21 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
TATAATATTTTTAAAAAA
Found at i:77503001 original size:64 final size:65
Alignment explanation
Indices: 77502895--77503022 Score: 179
Period size: 64 Copynumber: 2.0 Consensus size: 65
77502885 ACAAACTTAT
* * *
77502895 TAATAATATAACGACTTTGGATATAGTTTATCTTTAATATTACTATTATGGCACAACTAGATTAC
1 TAATAACATAACGACTTTGGATATAATTTATCTTTAATATTACTATTATAGCACAACTAGATTAC
* * *
77502960 TAATAACATAGCGAC-TTGGATGTAATTTA-CTTTTAGTATTACTATTATAGCACAACTAGATTA
1 TAATAACATAACGACTTTGGATATAATTTATC-TTTAATATTACTATTATAGCACAACTAGATTA
77503023 ATATCTGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
63 1 0.02
64 42 0.75
65 13 0.23
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (65 bp):
TAATAACATAACGACTTTGGATATAATTTATCTTTAATATTACTATTATAGCACAACTAGATTAC
Found at i:77504679 original size:17 final size:17
Alignment explanation
Indices: 77504657--77504707 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
77504647 TATAATAATA
*
77504657 TCTATTTTTTGTAATTT
1 TCTATTATTTGTAATTT
77504674 TCTATTATTTGTAATTT
1 TCTATTATTTGTAATTT
*
77504691 TCTA-TATTTCTAATTT
1 TCTATTATTTGTAATTT
77504707 T
1 T
77504708 TTTGTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 12 0.38
17 20 0.62
ACGTcount: A:0.22, C:0.08, G:0.04, T:0.67
Consensus pattern (17 bp):
TCTATTATTTGTAATTT
Found at i:77508172 original size:19 final size:19
Alignment explanation
Indices: 77508127--77508174 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
77508117 ATTATATTAA
* *
77508127 TAATTTTATT-TTTAATTT
1 TAATTTTTTTATTTAAATT
**
77508145 TAAAATTTTTATTTAAATT
1 TAATTTTTTTATTTAAATT
77508164 TAATTTTTTTA
1 TAATTTTTTTA
77508175 GAATGATGTT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TAATTTTTTTATTTAAATT
Found at i:77508316 original size:20 final size:20
Alignment explanation
Indices: 77508291--77508328 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77508281 TTTTTAAAAT
77508291 TATTTTTATAAATTTTTGAA
1 TATTTTTATAAATTTTTGAA
*
77508311 TATTTTTATAATTTTTTG
1 TATTTTTATAAATTTTTG
77508329 TTAGGGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TATTTTTATAAATTTTTGAA
Found at i:77513169 original size:16 final size:16
Alignment explanation
Indices: 77513148--77513180 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77513138 AAGCTTTTCC
77513148 TGTGTA-TATATTACTT
1 TGTGTATTAT-TTACTT
77513164 TGTGTATTATTTACTT
1 TGTGTATTATTTACTT
77513180 T
1 T
77513181 TAATCATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.61
Consensus pattern (16 bp):
TGTGTATTATTTACTT
Found at i:77514890 original size:26 final size:26
Alignment explanation
Indices: 77514860--77514911 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
77514850 CACCGCTGAA
*
77514860 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
77514886 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
77514912 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:77514994 original size:26 final size:26
Alignment explanation
Indices: 77514964--77515014 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
77514954 ACCAATGAAC
*
77514964 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
77514990 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
77515015 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:77515074 original size:104 final size:103
Alignment explanation
Indices: 77514828--77515196 Score: 632
Period size: 103 Copynumber: 3.6 Consensus size: 103
77514818 TAACCGTTAT
* * ** *
77514828 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
77514893 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
77514931 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
77514995 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
77515035 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
77515100 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
77515138 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
77515197 TTATATACAA
Statistics
Matches: 255, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
103 154 0.60
104 100 0.39
105 1 0.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (103 bp):
TGGTGGATCACGCACATAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:77515098 original size:26 final size:26
Alignment explanation
Indices: 77515068--77515118 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
77515058 ACCAATGAAC
*
77515068 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
77515094 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
77515119 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:77515557 original size:29 final size:29
Alignment explanation
Indices: 77515524--77515587 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
77515514 TAATCCACCA
77515524 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
77515553 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
77515583 CCCAA
1 CCCAA
77515588 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:77515561 original size:30 final size:30
Alignment explanation
Indices: 77515531--77515587 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
77515521 CCACCCAACT
77515531 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
77515560 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
77515588 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:77517390 original size:22 final size:23
Alignment explanation
Indices: 77517365--77517410 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
77517355 CAACCAAATC
77517365 AATTCAA-CATATTT-TCAAGATA
1 AATTCAAGCATATTTAT-AAGATA
77517387 AATTCAAGCATATTTATAAGATA
1 AATTCAAGCATATTTATAAGATA
77517410 A
1 A
77517411 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.32
23 14 0.64
24 1 0.05
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.35
Consensus pattern (23 bp):
AATTCAAGCATATTTATAAGATA
Found at i:77525141 original size:22 final size:23
Alignment explanation
Indices: 77525116--77525161 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
77525106 CAACCAAATC
77525116 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
77525138 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
77525161 A
1 A
77525162 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:77525167 original size:23 final size:23
Alignment explanation
Indices: 77525123--77525167 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77525113 ATCAATTCAA
*
77525123 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
77525146 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
77525168 CACATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:77532654 original size:16 final size:16
Alignment explanation
Indices: 77532633--77532665 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77532623 AAGCTTTTCC
77532633 TGTGTA-TATATTACTT
1 TGTGTATTAT-TTACTT
77532649 TGTGTATTATTTACTT
1 TGTGTATTATTTACTT
77532665 T
1 T
77532666 TAATCATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.61
Consensus pattern (16 bp):
TGTGTATTATTTACTT
Found at i:77536188 original size:25 final size:25
Alignment explanation
Indices: 77536150--77536210 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
77536140 TTAAGAGGAA
77536150 AATAAT-AG-ATAAAAATAATA-AA-
1 AATAATAAGAATAAAAATAA-ACAAG
*
77536172 AATGATAAGAATAAAAATAAACAAG
1 AATAATAAGAATAAAAATAAACAAG
77536197 AATAATAAGAATAA
1 AATAATAAGAATAA
77536211 GTAAAAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 5 0.15
23 3 0.09
24 12 0.36
25 13 0.39
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (25 bp):
AATAATAAGAATAAAAATAAACAAG
Found at i:77536404 original size:20 final size:21
Alignment explanation
Indices: 77536366--77536404 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
77536356 TAATGATAAT
*
77536366 AATAATAGTTGTAAAAGTAGA
1 AATAATAGTAGTAAAAGTAGA
*
77536387 AATAAT-GTAGTAATAGTA
1 AATAATAGTAGTAAAAGTA
77536405 ATAAAAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (21 bp):
AATAATAGTAGTAAAAGTAGA
Found at i:77536613 original size:3 final size:3
Alignment explanation
Indices: 77536546--77536598 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
77536536 CAATGCTAAG
77536546 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
77536594 ATA AT
1 ATA AT
77536599 GCAAAATGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:77536702 original size:19 final size:19
Alignment explanation
Indices: 77536675--77536738 Score: 62
Period size: 18 Copynumber: 3.5 Consensus size: 19
77536665 AGTAATATTC
*
77536675 ATACGTAAATATAAATATA
1 ATACATAAATATAAATATA
*
77536694 ATACATAAA-ATAAA-GTA
1 ATACATAAATATAAATATA
*
77536711 ATAACATAAATTTAAATA-A
1 AT-ACATAAATATAAATATA
*
77536730 ATAAATAAA
1 ATACATAAA
77536739 ATTAGATACA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 4 0.11
18 18 0.49
19 15 0.41
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (19 bp):
ATACATAAATATAAATATA
Found at i:77537542 original size:11 final size:12
Alignment explanation
Indices: 77537526--77537557 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
77537516 GAAAGGTATC
77537526 TATTTTTTATT-
1 TATTTTTTATTG
77537537 TATTTTTT-TTG
1 TATTTTTTATTG
77537548 TATTTTTTAT
1 TATTTTTTAT
77537558 GTCTTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.11
11 16 0.84
12 1 0.05
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (12 bp):
TATTTTTTATTG
Found at i:77537634 original size:15 final size:15
Alignment explanation
Indices: 77537597--77537635 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
77537587 ACTAGATTCA
77537597 AAAATAGAAAGAAAAG
1 AAAA-AGAAAGAAAAG
77537613 AAAAAGAAA-AAAAG
1 AAAAAGAAAGAAAAG
77537627 AAACAAGAA
1 AAA-AAGAA
77537636 CACGAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
15 10 0.45
16 4 0.18
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:77540109 original size:30 final size:30
Alignment explanation
Indices: 77540073--77540131 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
77540063 CTATTTACGA
77540073 TTGATAATATACATACAATGAGGAACAAGG
1 TTGATAATATACATACAATGAGGAACAAGG
77540103 TTGATAATATACATACAATGAGGAACAAG
1 TTGATAATATACATACAATGAGGAACAAG
77540132 ATTAACATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.10, G:0.19, T:0.24
Consensus pattern (30 bp):
TTGATAATATACATACAATGAGGAACAAGG
Found at i:77540253 original size:22 final size:24
Alignment explanation
Indices: 77540205--77540256 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
77540195 ATATAATAAA
77540205 ATACGTTTTTAAGGAATATATTAT
1 ATACGTTTTTAAGGAATATATTAT
77540229 ATACGTTTTTAAGGAATATATTAT
1 ATACGTTTTTAAGGAATATATTAT
77540253 ATAC
1 ATAC
77540257 ATAACAGACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (24 bp):
ATACGTTTTTAAGGAATATATTAT
Found at i:77540313 original size:28 final size:27
Alignment explanation
Indices: 77540281--77540377 Score: 85
Period size: 26 Copynumber: 3.6 Consensus size: 27
77540271 AGGTATATAC
*
77540281 ATAAAATAGTTTAAAGTAAATAACATAT
1 ATAAAATAGTTTAAAATAAATAA-ATAT
* *
77540309 ATAAAAATA-TTGAAAATAAAT-AATAC
1 AT-AAAATAGTTTAAAATAAATAAATAT
* *
77540335 GTAAAATAGTTTAAAATAACTAATATAT
1 ATAAAATAGTTTAAAATAAATAA-ATAT
*
77540363 ATACAA-A-TTTAAAAT
1 ATAAAATAGTTTAAAAT
77540378 GGGTAATAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
25 6 0.11
26 22 0.39
27 3 0.05
28 19 0.34
29 6 0.11
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (27 bp):
ATAAAATAGTTTAAAATAAATAAATAT
Found at i:77540340 original size:54 final size:52
Alignment explanation
Indices: 77540277--77540377 Score: 139
Period size: 54 Copynumber: 1.9 Consensus size: 52
77540267 TAAAAGGTAT
*
77540277 ATACATAAAATAGTTTAAAGTAAATAACATATATAAAAATATTGAAAATAAATA
1 ATACATAAAATAGTTTAAAATAAATAACATATATAAAAAT-TT-AAAATAAATA
* * * *
77540331 ATACGTAAAATAGTTTAAAATAACTAATATATATACAAATTTAAAAT
1 ATACATAAAATAGTTTAAAATAAATAACATATATAAAAATTTAAAAT
77540378 GGGTAATAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
52 5 0.12
53 2 0.05
54 35 0.83
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (52 bp):
ATACATAAAATAGTTTAAAATAAATAACATATATAAAAATTTAAAATAAATA
Found at i:77540350 original size:26 final size:26
Alignment explanation
Indices: 77540277--77540359 Score: 87
Period size: 26 Copynumber: 3.1 Consensus size: 26
77540267 TAAAAGGTAT
*
77540277 ATACATAAAATAGTTTAAAGTAAATAA
1 ATACATAAAATAGTTTAAAATAAAT-A
* *
77540304 CATATATAAAAATA-TTGAAAATAAATA
1 -ATACAT-AAAATAGTTTAAAATAAATA
* *
77540331 ATACGTAAAATAGTTTAAAATAACTA
1 ATACATAAAATAGTTTAAAATAAATA
77540357 ATA
1 ATA
77540360 TATATACAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
25 6 0.13
26 18 0.39
27 1 0.02
28 15 0.33
29 6 0.13
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (26 bp):
ATACATAAAATAGTTTAAAATAAATA
Found at i:77540479 original size:25 final size:27
Alignment explanation
Indices: 77540418--77540497 Score: 76
Period size: 26 Copynumber: 3.0 Consensus size: 27
77540408 TAATATGTCA
*
77540418 AAAACTTAAAGTAAATAATAATAGAAC
1 AAAACTTAAAATAAATAATAATAGAAC
** *
77540445 -AATTTTAAAATAAGTAAT-ATA-AAC
1 AAAACTTAAAATAAATAATAATAGAAC
* *
77540469 AAAACTTAAAATATAATAATGATAAAAC
1 AAAACTTAAAATA-AATAATAATAGAAC
77540497 A
1 A
77540498 GTTTTATTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
24 3 0.07
25 13 0.31
26 19 0.45
27 3 0.07
28 4 0.10
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.26
Consensus pattern (27 bp):
AAAACTTAAAATAAATAATAATAGAAC
Found at i:77541950 original size:33 final size:33
Alignment explanation
Indices: 77541891--77542183 Score: 211
Period size: 33 Copynumber: 8.8 Consensus size: 33
77541881 AGCTTTGGGT
**
77541891 AATTCTGGC-TTGGGCACATCAGGAACTTTAGGC
1 AATTCTGGCTTTGGTAAC-TCAGGAACTTTAGGC
* * * *
77541924 AATTCTGACTTTGGTAACTCAAGAACTTTTGGT
1 AATTCTGGCTTTGGTAACTCAGGAACTTTAGGC
* ** * *
77541957 AATT-TAGGATTTGGTAACTTGGGAGCTTTGGGC
1 AATTCT-GGCTTTGGTAACTCAGGAACTTTAGGC
* * * *
77541990 AATTTTGGCTTGGGCACCTCAGGAACTTT-GGAC
1 AATTCTGGCTTTGGTAACTCAGGAACTTTAGG-C
* *
77542023 AATTTTGGCTTTGGTAACTCAGGAGCTTTAGGC
1 AATTCTGGCTTTGGTAACTCAGGAACTTTAGGC
*
77542056 AAATT-TGGC-TTGG-ACATCTCAGGAACTTTAAGC
1 -AATTCTGGCTTTGGTA-A-CTCAGGAACTTTAGGC
** * * *
77542089 AATTCTGGCTTTGGTAACTTGGGAATTTTTGGT
1 AATTCTGGCTTTGGTAACTCAGGAACTTTAGGC
* * * *
77542122 AATTCAAGAGCTTTGGGAATCTTAGGAACTTTAGGT
1 AATTC-TG-GCTTTGGTAA-CTCAGGAACTTTAGGC
*
77542158 AATTCTGGCTTTGGTAACTCTGGAAC
1 AATTCTGGCTTTGGTAACTCAGGAAC
77542184 ATTGACTTTT
Statistics
Matches: 204, Mismatches: 42, Indels: 28
0.74 0.15 0.10
Matches are distributed among these distances:
31 1 0.00
32 12 0.06
33 134 0.66
34 28 0.14
35 11 0.05
36 18 0.09
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (33 bp):
AATTCTGGCTTTGGTAACTCAGGAACTTTAGGC
Found at i:77544598 original size:20 final size:21
Alignment explanation
Indices: 77544575--77544613 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
77544565 TGGCCTACGA
77544575 AAAGA-TCGCTTGGATTTAAG
1 AAAGAGTCGCTTGGATTTAAG
77544595 AAAGAGTCGCTTGGATTTA
1 AAAGAGTCGCTTGGATTTA
77544614 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (21 bp):
AAAGAGTCGCTTGGATTTAAG
Found at i:77550740 original size:24 final size:26
Alignment explanation
Indices: 77550712--77550777 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 26
77550702 TTGTGAATTT
77550712 GTATTATTATTTATATCATT-G-TTA
1 GTATTATTATTTATATCATTAGTTTA
*
77550736 GTATTATTA-TTAT-TCCTTAGTTTA
1 GTATTATTATTTATATCATTAGTTTA
*
77550760 TTATTATTATTT-TATCAT
1 GTATTATTATTTATATCAT
77550778 CATTTTCCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 4 0.11
23 5 0.14
24 21 0.60
25 5 0.14
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (26 bp):
GTATTATTATTTATATCATTAGTTTA
Found at i:77550890 original size:3 final size:3
Alignment explanation
Indices: 77550713--77550870 Score: 60
Period size: 3 Copynumber: 52.7 Consensus size: 3
77550703 TGTGAATTTG
* * * * *
77550713 TAT TAT TAT T-T ATAT CAT TGT TAG TAT TAT TAT TAT TCCT TAG T-T
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
* * * * *
77550758 TAT TAT TAT TAT T-T TAT CAT CAT T-T TCCAT TAT TGT TAT TAC TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T--AT TAT TAT TAT TAT TAT
* ** * * *
77550803 TA- TAC TAT TAT TAT TCC TAT TAAT GTAT TGT TAT TAT TCT CTAC T-T
1 TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT -TAT TAT
77550849 TAT TAT TAT TA- TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
77550871 CTGCTATCAT
Statistics
Matches: 114, Mismatches: 27, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
2 11 0.10
3 92 0.81
4 8 0.07
5 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:77551087 original size:27 final size:26
Alignment explanation
Indices: 77551027--77551088 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
77551017 ATTTAAAATA
* *
77551027 TTTTATATATAGCATTTCTTTTAAAC
1 TTTTATATGTAGCATTTATTTTAAAC
* * *
77551053 TATCATATGTAGTATTTATTTTGAAAC
1 TTTTATATGTAGCATTTATTTT-AAAC
77551080 TTTTATATG
1 TTTTATATG
77551089 CATCTTTGTA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (26 bp):
TTTTATATGTAGCATTTATTTTAAAC
Found at i:77557323 original size:46 final size:46
Alignment explanation
Indices: 77557243--77557609 Score: 495
Period size: 46 Copynumber: 8.0 Consensus size: 46
77557233 TTCGACATGA
* * * * * * *
77557243 TGCCATAGTGTCTTTCAACTATGGTCTTTCTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** *** *
77557289 TTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCAGGT
* *
77557336 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77557382 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
77557428 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
77557474 TGCCATGGTATCTTTCAACTACGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
77557520 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
77557566 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
77557610 AGAGCACACT
Statistics
Matches: 291, Mismatches: 27, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 3 0.01
46 245 0.84
47 43 0.15
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:77559765 original size:11 final size:11
Alignment explanation
Indices: 77559749--77559800 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
77559739 TATGCTAAAT
77559749 AAATAATAATA
1 AAATAATAATA
*
77559760 AAATAAT-ATT
1 AAATAATAATA
* *
77559770 AAATATCTCATA
1 AAATA-ATAATA
*
77559782 AAATATTAATA
1 AAATAATAATA
77559793 AAATAATA
1 AAATAATA
77559801 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:77568628 original size:87 final size:85
Alignment explanation
Indices: 77568271--77568867 Score: 708
Period size: 87 Copynumber: 6.8 Consensus size: 85
77568261 TGAATTCACA
* *
77568271 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTACAGATCTTGTCTCCCTAAGCAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTACAGATCTTATCACCCTAAGCAGTAG
* ** *
77568336 CAGAGTAGATCGAAGACGATG
66 GA-AACAGATCGAAGATGATG
* * * * * *
77568357 AGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAGATTATAGATATTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTACAGATCTTATCACCCTAAGCAGT
* * * *
77568422 AGTGGAGCAGATCGAAGACGGTG
64 AG-GAAACAGATCGAAGATGATG
* * * * *
77568445 AGCCTTAATCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCACCCCAAGAAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT--GAATTACAGATCTTATCACCCTAAGCAGT
* *
77568510 AGGGAAACAAATCGAAGATGACG
64 A-GGAAACAGATCGAAGATGATG
* * *
77568533 GGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTGATAGATCTTATCACCCTAAGCAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATT-ACAGATCTTATCACCCTAAGCAGTA
* * *
77568598 GGAAAACAGATCAAAGGTGGTG
65 GG-AAACAGATCGAAGATGATG
* *
77568620 AGCCTTAACCCCCTAAGTAGTAGGGTAACAAGCTGAATTGACAGATCTTATCACCCTAAGCAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATT-ACAGATCTTATCACCCTAAGCAGT-
*
77568685 AGGAAACAGATCGAAGGTGATG
64 AGGAAACAGATCGAAGATGATG
* * *
77568707 GGCCTTAACCCCCTAAGTAGTAGGGTAATAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAA-TTACAGATCTTATCACCCTAAGCAGTA
* *
77568772 GGGAAACAGATCGAAGGTGGTG
65 -GGAAACAGATCGAAGATGATG
*
77568794 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGATCTTATCACCCTAAACAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATT-ACAGATCTTATCACCCTAAGCAGT-
*
77568859 AGGCAACAG
64 AGGAAACAG
77568868 GCTGAAAATT
Statistics
Matches: 450, Mismatches: 48, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
86 43 0.10
87 256 0.57
88 149 0.33
89 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (85 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTACAGATCTTATCACCCTAAGCAGTAG
GAAACAGATCGAAGATGATG
Found at i:77568722 original size:174 final size:171
Alignment explanation
Indices: 77568271--77568867 Score: 782
Period size: 174 Copynumber: 3.4 Consensus size: 171
77568261 TGAATTCACA
* *
77568271 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTACAGATCTTGTCTCCCTAAGCAGT-A
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTACAGATCTTATCACCCTAAGCAGTAA
* ** * * *
77568335 GCAGAGTAGATCGAAGACGATGAGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGAAGATTAT
66 GGA-AACAGATCGAAGATGATGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT-AA-ATTAT
* * * * * **
77568400 AGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
128 AGATCTTATCACCCTAAGCAGTAG-GAAACAGATCGAAGGTGGTG
* * * * *
77568445 AGCCTTAATCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCACCCCAAGAAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT--GAATTACAGATCTTATCACCCTAAGCAGT
* * * *
77568510 AGGGAAACAAATCGAAGATGACGGGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTGAT
64 AAGGAAACAGATCGAAGATGATGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATT-AT
*
77568575 AGATCTTATCACCCTAAGCAGTAGGAAAACAGATCAAAGGTGGTG
128 AGATCTTATCACCCTAAGCAGTAGG-AAACAGATCGAAGGTGGTG
* *
77568620 AGCCTTAACCCCCTAAGTAGTAGGGTAACAAGCTGAATTGACAGATCTTATCACCCTAAGCAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATT-ACAGATCTTATCACCCTAAGCAGTA
* * * *
77568685 AGGAAACAGATCGAAGGTGATGGGCCTTAACCCCCTAAGTAGTAGGGTAATAGGCTGAATTTACA
65 AGGAAACAGATCGAAGATGATGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT-AAATTATA
77568750 GATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGTGGTG
129 GATCTTATCACCCTAAGCAGTA-GGAAACAGATCGAAGGTGGTG
*
77568794 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGATCTTATCACCCTAAACAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATT-ACAGATCTTATCACCCTAAGCAGTA
*
77568859 AGGCAACAG
65 AGGAAACAG
77568868 GCTGAAAATT
Statistics
Matches: 370, Mismatches: 45, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
173 4 0.01
174 221 0.60
175 76 0.21
176 67 0.18
177 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (171 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTACAGATCTTATCACCCTAAGCAGTAA
GGAAACAGATCGAAGATGATGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAATTATAGA
TCTTATCACCCTAAGCAGTAGGAAACAGATCGAAGGTGGTG
Found at i:77568824 original size:44 final size:44
Alignment explanation
Indices: 77568342--77568824 Score: 231
Period size: 44 Copynumber: 11.0 Consensus size: 44
77568332 GTAGCAGAGT
* * *
77568342 AGATCGAAGACGATGAGCCTTAACCCTCTAAGTAGTAGGGTAAC
1 AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * ** ** * *
77568386 AG-GCTGAAGATTAT-AGATATTGTCTCCCTAAGCAGTAGTGG-AGC
1 AGATC-GAAGATGATGAG-CCTTAACCCCCTAAGCAGTAG-GGTAAC
* * *
77568430 AGATCGAAGACGGTGAGCCTTAATCCCCTAAGCAGTAGGGTAAC
1 AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * * * * * * *
77568474 AG-GCTAAAAATTAT-AGATCTTATCACCCC-AAGAAGTAGGGAAAC
1 AGATC-GAAGATGATGAG-CCTTAAC-CCCCTAAGCAGTAGGGTAAC
* * *
77568518 AAATCGAAGATGACGGGCCTTAACCCCCTAAGCAGTAGGGTAAC
1 AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * * * * **
77568562 AG-GCTAA-ATTGAT-AGATCTTATCACCCTAAGCAGTAGGAAAAC
1 AGATCGAAGA-TGATGAG-CCTTAACCCCCTAAGCAGTAGGGTAAC
* * * *
77568605 AGATCAAAGGTGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAAC
1 AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * * * * * * *
77568649 A-AGCTGAA-TTGA-CAGATCTTATCACCCTAAGCAGTAAGGAAAC
1 AGATC-GAAGATGATGAG-CCTTAACCCCCTAAGCAGTAGGGTAAC
* * * *
77568692 AGATCGAAGGTGATGGGCCTTAACCCCCTAAGTAGTAGGGTAAT
1 AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * * * * * * *
77568736 AG-GCTGAA-TTTA-CAGATCTTATCACCCTAAGCAGTAGGGAAAC
1 AGATC-GAAGATGATGAG-CCTTAACCCCCTAAGCAGTAGGGTAAC
* *
77568779 AGATCGAAGGTGGTGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
1 AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
77568823 AG
1 AG
77568825 GCTGAATTGA
Statistics
Matches: 306, Mismatches: 106, Indels: 54
0.66 0.23 0.12
Matches are distributed among these distances:
42 5 0.02
43 100 0.33
44 185 0.60
45 16 0.05
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (44 bp):
AGATCGAAGATGATGAGCCTTAACCCCCTAAGCAGTAGGGTAAC
Found at i:77568871 original size:43 final size:43
Alignment explanation
Indices: 77568455--77568873 Score: 213
Period size: 44 Copynumber: 9.6 Consensus size: 43
77568445 AGCCTTAATC
* * *
77568455 CCCTAAGCAGTAGGGTAACAGGCTAAAAATT-ATAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGGCT--GAATTGACAGATCTTATCA
* * ** * * ** * *
77568499 CCCCAAGAAGTAGGGAAACA-AATCGAAGATGACGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGGCT-GAA-TTGACAGATCTTATCA
* * *
77568543 CCCTAAGCAGTAGGGTAACAGGCTAAATTGATAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGGCTGAATTGACAGATCTTATCA
* * * * ** * * *
77568586 CCCTAAGCAGTAGGAAAACA-GATCAAAGGTG-GTGAGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGGCT-GAA-TTGACAGA-TCTTATCA
* * *
77568630 CCCTAAGTAGTAGGGTAACAAGCTGAATTGACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGGCTGAATTGACAGATCTTATCA
* * * ** ** * *
77568673 CCCTAAGCAGTAAGGAAACA-GATCGAAGGTGATGGGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGGCT-GAA-TTGACAGATCTTATCA
* * * *
77568717 CCCTAAGTAGTAGGGTAATAGGCTGAATTTACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGGCTGAATTGACAGATCTTATCA
* * ** * * *
77568760 CCCTAAGCAGTAGGGAAACA-GATCGAAGGTG-GTGAGCCTTAACC
1 CCCTAAGCAGTAGGGAAACAGGCT-GAA-TTGACAGA-TCTTATCA
*
77568804 CCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGGCTGAATTGACAGATCTTATCA
* * *
77568847 CCCTAAACAGTAAGGCAACAGGCTGAA
1 CCCTAAGCAGTAGGGAAACAGGCTGAA
77568874 AATTACAAGT
Statistics
Matches: 266, Mismatches: 93, Indels: 33
0.68 0.24 0.08
Matches are distributed among these distances:
42 8 0.03
43 122 0.46
44 129 0.48
45 7 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAAACAGGCTGAATTGACAGATCTTATCA
Found at i:77568932 original size:45 final size:45
Alignment explanation
Indices: 77568879--77568991 Score: 174
Period size: 45 Copynumber: 2.5 Consensus size: 45
77568869 CTGAAAATTA
* *
77568879 CAAGTCTTATCTCCCTAAAGTTGCAG-TGGAGCAGTCTGAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTGC-GTTGGAGCAGACTGAAGATAG
77568924 CAAGTCTTATCTCCCTGAAGTTGCGTTGGAGCAGACTGAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTGCGTTGGAGCAGACTGAAGATAG
* *
77568969 CAAATCTTATCTCTCTGAAGTTG
1 CAAGTCTTATCTCCCTGAAGTTG
77568992 TAGTAGAGTA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 1 0.02
45 62 0.98
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (45 bp):
CAAGTCTTATCTCCCTGAAGTTGCGTTGGAGCAGACTGAAGATAG
Found at i:77570518 original size:24 final size:26
Alignment explanation
Indices: 77570490--77570555 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 26
77570480 TTGTGAATTT
77570490 GTATTATTATTTATATCATT-G-TTA
1 GTATTATTATTTATATCATTAGTTTA
*
77570514 GTATTATTA-TTAT-TCCTTAGTTTA
1 GTATTATTATTTATATCATTAGTTTA
*
77570538 TTATTATTATTT-TATCAT
1 GTATTATTATTTATATCAT
77570556 CATTTTCCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 4 0.11
23 5 0.14
24 21 0.60
25 5 0.14
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (26 bp):
GTATTATTATTTATATCATTAGTTTA
Found at i:77570668 original size:3 final size:3
Alignment explanation
Indices: 77570491--77570648 Score: 51
Period size: 3 Copynumber: 52.7 Consensus size: 3
77570481 TGTGAATTTG
* * * * *
77570491 TAT TAT TAT T-T ATAT CAT TGT TAG TAT TAT TAT TAT TCCT TAG T-T
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
* * * * *
77570536 TAT TAT TAT TAT T-T TAT CAT CAT T-T TCCAT TAT TGT TAT TAC TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T--AT TAT TAT TAT TAT TAT
* ** * * * *
77570581 TA- TAC TAT TAT TAT TCC TAT TAAT GTAT TGT TAT TAC TCT CTAC T-T
1 TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT -TAT TAT
77570627 TAT TAT TA- TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
77570649 CTGCTATCAT
Statistics
Matches: 112, Mismatches: 29, Indels: 28
0.66 0.17 0.17
Matches are distributed among these distances:
2 11 0.10
3 90 0.80
4 8 0.07
5 3 0.03
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:77573343 original size:22 final size:22
Alignment explanation
Indices: 77573283--77573343 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
77573273 TGGAAAAGGA
* *
77573283 TTTTATTTTATTCTAATCTTATT
1 TTTTATTTT-TTCTCATATTATT
*
77573306 TTATT-TTTTTTGCTCATATTGTT
1 TT-TTATTTTTT-CTCATATTATT
77573329 TTTTATTTTTTCTCA
1 TTTTATTTTTTCTCA
77573344 AAAGCTGAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
22 8 0.25
23 22 0.69
24 2 0.06
ACGTcount: A:0.16, C:0.10, G:0.03, T:0.70
Consensus pattern (22 bp):
TTTTATTTTTTCTCATATTATT
Found at i:77574863 original size:60 final size:59
Alignment explanation
Indices: 77574787--77574925 Score: 174
Period size: 60 Copynumber: 2.3 Consensus size: 59
77574777 AACTGTGTCA
* *
77574787 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
77574847 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
77574907 ATATGGGCTAAGGCCCAAT
1 ATATGGGCT-AGGCCCAAT
77574926 TAACTTTGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.74
61 17 0.24
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:77576494 original size:33 final size:32
Alignment explanation
Indices: 77576390--77576606 Score: 114
Period size: 33 Copynumber: 6.6 Consensus size: 32
77576380 TTCTGGTTTC
* *
77576390 AATTCAGGCTTTGGTAA-TTCAGGAGCTTTGGGT
1 AATTCAGGC-TTGGCAACTT-AGGAACTTTGGGT
** * * *
77576423 AATTTTGGCTTAGGC-ACTTCAAGAACTTTAGGC
1 AATTCAGGCTT-GGCAACTT-AGGAACTTTGGGT
* *
77576456 AATTCAGGCATTGGTAACTTAGGAACTTTTGGT
1 AATTCAGGC-TTGGCAACTTAGGAACTTTGGGT
* **
77576489 GATTCATGTTTTGGCAACTTAGGAACTTTGGGT
1 AATTCA-GGCTTGGCAACTTAGGAACTTTGGGT
* * * ** *
77576522 AATTCTGGCTTGGGCATCTCAGGAACTTTAAGC
1 AATTCAGGCTT-GGCAACTTAGGAACTTTGGGT
* * * * *
77576555 AATTCAGGCTTTGGTAAATCATGAACTTTTGGT
1 AATTCAGGC-TTGGCAACTTAGGAACTTTGGGT
* *
77576588 AATTCGGGTTGTGGCAACT
1 AATTCAGGCT-TGGCAACT
77576607 CTAGCTTGGG
Statistics
Matches: 137, Mismatches: 39, Indels: 16
0.71 0.20 0.08
Matches are distributed among these distances:
32 7 0.05
33 121 0.88
34 9 0.07
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (32 bp):
AATTCAGGCTTGGCAACTTAGGAACTTTGGGT
Found at i:77576562 original size:99 final size:99
Alignment explanation
Indices: 77576410--77576606 Score: 261
Period size: 99 Copynumber: 2.0 Consensus size: 99
77576400 TTGGTAATTC
* * * *
77576410 AGGAGCTTTGGGTAATTTTGGCTTAGGCACTTCAAGAACTTTAGGCAATTCAGGCATTGGTAACT
1 AGGAACTTTGGGTAATTCTGGCTTAGGCACTTCAAGAACTTTAAGCAATTCAGGCATTGGTAAAT
* * * *
77576475 TAGGAACTTTTGGTGATTCATGTTTTGGCAACTT
66 CAGGAACTTTTGGTAATTCAGGTTGTGGCAACTT
* * *
77576509 AGGAACTTTGGGTAATTCTGGCTTGGGCA-TCTCAGGAACTTTAAGCAATTCAGGCTTTGGTAAA
1 AGGAACTTTGGGTAATTCTGGCTTAGGCACT-TCAAGAACTTTAAGCAATTCAGGCATTGGTAAA
* *
77576573 TCATGAACTTTTGGTAATTCGGGTTGTGGCAACT
65 TCAGGAACTTTTGGTAATTCAGGTTGTGGCAACT
77576607 CTAGCTTGGG
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
98 1 0.01
99 83 0.99
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (99 bp):
AGGAACTTTGGGTAATTCTGGCTTAGGCACTTCAAGAACTTTAAGCAATTCAGGCATTGGTAAAT
CAGGAACTTTTGGTAATTCAGGTTGTGGCAACTT
Found at i:77576616 original size:81 final size:81
Alignment explanation
Indices: 77576529--77576687 Score: 228
Period size: 81 Copynumber: 2.0 Consensus size: 81
77576519 GGTAATTCTG
* * * * *
77576529 GCTTGGGCATCTCAGGAACTTTAAGCAATTCAGGCTTTGGTAAATCATGAACTTTTGGTAATTCG
1 GCTTGGGCACCTCAGGAACTTTAAGAAATTCAGACTTTGGTAAATCAGGAACTTTTAGTAATTCG
77576594 GGTTGTGGCAACTCTA
66 GGTTGTGGCAACTCTA
* ** *
77576610 GCTTGGGCACCTCAGGAAGTTTGGGAAATTCAGACTTTGGTAACTCAGGAACTTTTAGTAATTCG
1 GCTTGGGCACCTCAGGAACTTTAAGAAATTCAGACTTTGGTAAATCAGGAACTTTTAGTAATTCG
*
77576675 GGTTTTGGCAACT
66 GGTTGTGGCAACT
77576688 TAGGAGCTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (81 bp):
GCTTGGGCACCTCAGGAACTTTAAGAAATTCAGACTTTGGTAAATCAGGAACTTTTAGTAATTCG
GGTTGTGGCAACTCTA
Found at i:77576673 original size:33 final size:33
Alignment explanation
Indices: 77576620--77576764 Score: 134
Period size: 33 Copynumber: 4.4 Consensus size: 33
77576610 GCTTGGGCAC
* * * * *
77576620 CTCAGGAAGTTTGGGAAATTCAGACTTTGGTAA
1 CTCAGGAACTTTAGGTAATTCTGGCTTTGGTAA
* * *
77576653 CTCAGGAACTTTTA-GTAATTCGGGTTTTGGCAA
1 CTCAGGAAC-TTTAGGTAATTCTGGCTTTGGTAA
* *
77576686 CTTAGGAGCTTTAGGTAATTCTGGC-TTGG-ACA
1 CTCAGGAACTTTAGGTAATTCTGGCTTTGGTA-A
*
77576718 CCTCAGGAACTTTAGGCAATTCTGGCTTTGGTAA
1 -CTCAGGAACTTTAGGTAATTCTGGCTTTGGTAA
*
77576752 CTCAGAAACTTTA
1 CTCAGGAACTTTA
77576765 AATAATGGAT
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
31 1 0.01
32 9 0.10
33 72 0.79
34 8 0.09
35 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (33 bp):
CTCAGGAACTTTAGGTAATTCTGGCTTTGGTAA
Found at i:77576968 original size:33 final size:33
Alignment explanation
Indices: 77576777--77576968 Score: 129
Period size: 33 Copynumber: 5.8 Consensus size: 33
77576767 TAATGGATAC
* * * * **
77576777 TCAGGAGCTTTAGGTAATTCTAGCTTGGGCACC
1 TCAGGAACTTTGGGTAATTCTAGTTTTGGCAAT
* * * *
77576810 TCAGGAAGTTTGGGTAATTCTAGCTTTGGTAAC
1 TCAGGAACTTTGGGTAATTCTAGTTTTGGCAAT
* * * *
77576843 TCAAGAGCTTTTGATAATTC-AGGTTTTGGCAAT
1 TCAGGAACTTTGGGTAATTCTA-GTTTTGGCAAT
* * * *
77576876 TCAGGAACTTTGGGTGATTCTAGCTTGGGCACCT
1 TCAGGAACTTTGGGTAATTCTAGTTTTGGCA-AT
* * * *
77576910 T-AGGAACTTTCGGCAATTCTTGTTTTGGTAAT
1 TCAGGAACTTTGGGTAATTCTAGTTTTGGCAAT
*
77576942 TCAGGAACTTTTGGTAATT-TAGGTTTT
1 TCAGGAACTTTGGGTAATTCTA-GTTTT
77576969 AGTAGCTCAA
Statistics
Matches: 121, Mismatches: 33, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
32 4 0.03
33 114 0.94
34 3 0.02
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (33 bp):
TCAGGAACTTTGGGTAATTCTAGTTTTGGCAAT
Found at i:77577027 original size:99 final size:99
Alignment explanation
Indices: 77576775--77577041 Score: 293
Period size: 99 Copynumber: 2.7 Consensus size: 99
77576765 AATAATGGAT
* * * * *
77576775 ACTCAGGAGCTTTAGGTAATTCTAGCTTGGGCACCTCAGGAAGTTTGGGTAATTCTAGCTTTGGT
1 ACTCAGGAGCTTTAGGTAATTCTAGCTTGGGCACCTTAGGAACTTTAGGTAATTCTTGTTTTGGT
* *
77576840 AACTCAAGAGCTTTTGATAATTCAGGTTTTGGCA
66 AACTCAAGAACTTTTGATAATTCAGGTTTTAGCA
* * * * * *
77576874 ATTCAGGAACTTTGGGTGATTCTAGCTTGGGCACCTTAGGAACTTTCGGCAATTCTTGTTTTGGT
1 ACTCAGGAGCTTTAGGTAATTCTAGCTTGGGCACCTTAGGAACTTTAGGTAATTCTTGTTTTGGT
* * * * *
77576939 AATTCAGGAACTTTTGGTAATTTAGGTTTTAGTA
66 AACTCAAGAACTTTTGATAATTCAGGTTTTAGCA
* * * * * *
77576973 GCTCAAGAGTTTTAGGTAATTCTGGTTTGGGCACCTTAGGAACTTTAAGTAATTC-TGTCTTTGG
1 ACTCAGGAGCTTTAGGTAATTCTAGCTTGGGCACCTTAGGAACTTTAGGTAATTCTTGT-TTTGG
*
77577037 AAACT
65 TAACT
77577042 TTGGCAACTC
Statistics
Matches: 136, Mismatches: 31, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
98 3 0.02
99 133 0.98
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (99 bp):
ACTCAGGAGCTTTAGGTAATTCTAGCTTGGGCACCTTAGGAACTTTAGGTAATTCTTGTTTTGGT
AACTCAAGAACTTTTGATAATTCAGGTTTTAGCA
Found at i:77580607 original size:21 final size:23
Alignment explanation
Indices: 77580568--77580624 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
77580558 GTTTTAAAAT
* *
77580568 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
77580590 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
77580613 TTGGGCTAGGTT
1 TTGGGCTAGGTT
77580625 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:77581131 original size:20 final size:19
Alignment explanation
Indices: 77581105--77581162 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
77581095 CTCTATTAAC
77581105 AAAAATTACAAAATAATTT-T
1 AAAAATT-CAAAAT-ATTTAT
*
77581125 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
77581144 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
77581162 A
1 A
77581163 TTTCTTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 11 0.32
19 17 0.50
20 6 0.18
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:77583762 original size:23 final size:22
Alignment explanation
Indices: 77583704--77583747 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
77583694 AAGAAAAAGA
77583704 AAGAAAAATCTAATGAGAGTTC
1 AAGAAAAATCTAATGAGAGTTC
77583726 AAGAAAAATCTAATGAGAGTTC
1 AAGAAAAATCTAATGAGAGTTC
77583748 TTTTAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (22 bp):
AAGAAAAATCTAATGAGAGTTC
Found at i:77584027 original size:14 final size:15
Alignment explanation
Indices: 77584008--77584061 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 15
77583998 AATCTTCAAT
77584008 GATATG-CAATCTTA
1 GATATGACAATCTTA
77584022 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
77584039 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
77584057 GATAT
1 GATAT
77584062 AATATACAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.18
15 1 0.03
17 14 0.41
18 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:77584034 original size:17 final size:17
Alignment explanation
Indices: 77584014--77584077 Score: 83
Period size: 17 Copynumber: 3.6 Consensus size: 17
77584004 CAATGATATG
77584014 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
77584031 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
77584049 CAATCTTAGATATAATATA
1 CAATCTTAGATAT--GATA
77584068 CAATCTTAGA
1 CAATCTTAGA
77584078 AGATATGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
17 15 0.37
18 14 0.34
19 11 0.27
20 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:77584052 original size:35 final size:37
Alignment explanation
Indices: 77584006--77584084 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
77583996 ATAATCTTCA
77584006 ATGATATGCAATCTTAGATAT-GATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATAGATACAATCTTAGAT
*
77584042 ATGAT-TGCAATCTTAGATATAATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATAT-AGATACAATCTTAGAT
77584078 A-GATATG
1 ATGATATG
77584085 ATTTTGTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 18 0.46
36 8 0.21
37 13 0.33
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATAGATACAATCTTAGAT
Found at i:77584606 original size:15 final size:16
Alignment explanation
Indices: 77584556--77584621 Score: 73
Period size: 16 Copynumber: 3.9 Consensus size: 16
77584546 TCTAAACCAA
77584556 TATATAATATATTTTT
1 TATATAATATATTTTT
77584572 TATATAAT-TATTATTCT
1 TATATAATATATT-TT-T
77584589 TATA-AATATATTTTT
1 TATATAATATATTTTT
77584604 TATTATATATTATATTTT
1 TA-TATA-A-TATATTTT
77584622 AAATTTATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
15 7 0.16
16 17 0.40
17 10 0.23
18 1 0.02
19 8 0.19
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATAATATATTTTT
Found at i:77584646 original size:26 final size:26
Alignment explanation
Indices: 77584598--77584647 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
77584588 TTATAAATAT
* * * *
77584598 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
77584624 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
77584648 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:77586609 original size:22 final size:22
Alignment explanation
Indices: 77586567--77586609 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
77586557 GATATATAAT
*
77586567 AGATTAATTATAACGTAGAATC
1 AGATTAATTATAACGGAGAATC
*
77586589 AGATTAA-TATAATGGATGAAT
1 AGATTAATTATAACGGA-GAAT
77586610 AATCATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.33
Consensus pattern (22 bp):
AGATTAATTATAACGGAGAATC
Found at i:77588372 original size:17 final size:19
Alignment explanation
Indices: 77588275--77588365 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
77588265 ATAATCTTCA
77588275 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
77588294 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
77588313 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
77588330 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
77588348 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
77588366 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:77588391 original size:22 final size:22
Alignment explanation
Indices: 77588275--77588388 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
77588265 ATAATCTTCA
77588275 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
77588294 ATGATATGCAAT-TT--TAGAT
1 ATGATATGCAATCTTAGAAGAT
77588313 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
77588330 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
77588348 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
77588370 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
77588389 GATTTAATTT
Statistics
Matches: 84, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
17 13 0.15
18 20 0.24
19 31 0.37
22 8 0.10
23 12 0.14
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:77589768 original size:3 final size:3
Alignment explanation
Indices: 77589762--77589788 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
77589752 TAGTAGTTCC
77589762 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
77589789 GTAAAACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:77592399 original size:38 final size:39
Alignment explanation
Indices: 77592298--77592436 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
77592288 AGCTCGATGA
*
77592298 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
*
77592337 GCTTCAGTTAGCCTTC-AGGTTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGA-GCTTCCGTTTAGCACTTGTGT
* *
77592376 ACTTCAG-TAGCCTTCGAGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
*
77592414 GCTTCAGTTAGACTTCGAGCTTC
1 GCTTCAGTTAGCCTTCGAGCTTC
77592437 AGATCACGAT
Statistics
Matches: 90, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
38 33 0.37
39 57 0.63
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
Found at i:77594803 original size:33 final size:33
Alignment explanation
Indices: 77594766--77594884 Score: 123
Period size: 33 Copynumber: 3.6 Consensus size: 33
77594756 TGGCAATTCG
* *
77594766 GGAACTTTTGGTAATTCAAGTTTTGGTACCTCA
1 GGAACTTTTGGCAATTCAGGTTTTGGTACCTCA
* * *
77594799 GGAACTTTGGGCAATTCTGGTTTCGGTACCTCA
1 GGAACTTTTGGCAATTCAGGTTTTGGTACCTCA
* * * *
77594832 GGAA-TTTTAGGCAATTCTGGTTTTGTTAACTCG
1 GGAACTTTT-GGCAATTCAGGTTTTGGTACCTCA
* *
77594865 GGAATTTTTGGTAATTCAGG
1 GGAACTTTTGGCAATTCAGG
77594885 AGCTTTGGGC
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
32 3 0.04
33 65 0.90
34 4 0.06
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (33 bp):
GGAACTTTTGGCAATTCAGGTTTTGGTACCTCA
Found at i:77595031 original size:84 final size:84
Alignment explanation
Indices: 77594786--77595043 Score: 255
Period size: 84 Copynumber: 3.1 Consensus size: 84
77594776 GTAATTCAAG
* * * * * * * * *
77594786 TTTTGGTACCTCAGGAACTTTGGGCAATTCTGGTTTCGGTACCTCAGGAATTTTAGGCAATTCTG
1 TTTTGGCAACTCAGGAGCCTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* *
77594851 GTTTTGTTAACTCGGGAAT
66 GCTTTGGTAACTCGGGAAT
* * * * * **
77594870 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCTGGAACTTTAGGCAATTCCA
1 TTTTGGCAACTCAGGAGCCTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* * * * *
77594935 ACGTCGGTAACTCTGGAAC
66 GCTTTGGTAACTCGGGAAT
* * * * *
77594954 TTTTGGCAACTCGGGAGCCTTGGGTAATTCAGGCTTGGGCACCTCGGGAACTTTAGGCAACTCTG
1 TTTTGGCAACTCAGGAGCCTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
*
77595019 GCTTTGGCAACTCGGGAAT
66 GCTTTGGTAACTCGGGAAT
77595038 TTTTGG
1 TTTTGG
77595044 TGCTTCAAAT
Statistics
Matches: 140, Mismatches: 34, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
84 140 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (84 bp):
TTTTGGCAACTCAGGAGCCTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
GCTTTGGTAACTCGGGAAT
Found at i:77595230 original size:51 final size:51
Alignment explanation
Indices: 77595162--77595328 Score: 185
Period size: 51 Copynumber: 3.3 Consensus size: 51
77595152 AACCTTAGAA
** *
77595162 AATTCAGGCATTGGCAACTCTGACACTTTTGGAAACTCAGGATCCTTAGGT
1 AATTCAGGTTTTGGCAACTCTGACACTTTAGGAAACTCAGGATCCTTAGGT
* * * * *
77595213 AATTCAGGTTTTGGCAACTCTGGCACTTTCGGAAACTCGGGAACCTTAGGC
1 AATTCAGGTTTTGGCAACTCTGACACTTTAGGAAACTCAGGATCCTTAGGT
* * *
77595264 AATTCAGGTTTTGGCAACTCCGGA-ACTTTAGGCAACTCAGGCAT-TTTAGGT
1 AATTCAGGTTTTGGCAACT-CTGACACTTTAGGAAACTCAGG-ATCCTTAGGT
* *
77595315 ATTTCGGGTTTTGG
1 AATTCAGGTTTTGG
77595329 AATTTCTGGC
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
51 94 0.97
52 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (51 bp):
AATTCAGGTTTTGGCAACTCTGACACTTTAGGAAACTCAGGATCCTTAGGT
Found at i:77595311 original size:18 final size:17
Alignment explanation
Indices: 77595258--77595313 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 17
77595248 CTCGGGAACC
*
77595258 TTAGGCAATTCAGG-TT
1 TTAGGCAACTCAGGATT
* *
77595274 TT-GGCAACTCCGGAACT
1 TTAGGCAACTCAGG-ATT
77595291 TTAGGCAACTCAGGCATT
1 TTAGGCAACTCAGG-ATT
77595309 TTAGG
1 TTAGG
77595314 TATTTCGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 9 0.29
16 2 0.06
17 3 0.10
18 17 0.55
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (17 bp):
TTAGGCAACTCAGGATT
Found at i:77595936 original size:19 final size:19
Alignment explanation
Indices: 77595912--77595959 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
77595902 GATTTTTTAA
77595912 AATAAT-TACATAT-AATATT
1 AATAATATA-ATATAAATA-T
77595931 AATAATATAATATAAATAT
1 AATAATATAATATAAATAT
77595950 AATAAATATA
1 AAT-AATATA
77595960 TGAACGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AATAATATAATATAAATAT
Found at i:77596666 original size:19 final size:20
Alignment explanation
Indices: 77596624--77596668 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
77596614 TGTTTTTTTT
*
77596624 TTTTTATATTCCCTCAATAT
1 TTTTTATATTCCCTCAATAG
* *
77596644 TTTTTGTATTTCCTC-ATAG
1 TTTTTATATTCCCTCAATAG
77596663 TTTTTA
1 TTTTTA
77596669 GTACTTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.20, C:0.16, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTTATATTCCCTCAATAG
Found at i:77596719 original size:20 final size:19
Alignment explanation
Indices: 77596679--77596763 Score: 75
Period size: 20 Copynumber: 4.4 Consensus size: 19
77596669 GTACTTATTC
**
77596679 ATAATTTTTATTATTCGCTT
1 ATAATTTTTA-TATTTTCTT
*
77596699 ATAATTTTTGATACTTTCTT
1 ATAATTTTT-ATATTTTCTT
* * *
77596719 A-ATTTTTTTTATTTTCTC
1 ATAATTTTTATATTTTCTT
77596737 ATAATTTTTAGTATTTTCTT
1 ATAATTTTTA-TATTTTCTT
77596757 AT-ATTTT
1 ATAATTTT
77596764 CCGGTAGTCC
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
18 8 0.15
19 17 0.33
20 26 0.50
21 1 0.02
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.65
Consensus pattern (19 bp):
ATAATTTTTATATTTTCTT
Found at i:77596731 original size:38 final size:38
Alignment explanation
Indices: 77596656--77596763 Score: 110
Period size: 38 Copynumber: 2.8 Consensus size: 38
77596646 TTTGTATTTC
* *
77596656 CTCATAGTTTTTAGTACTTATTCATAATTTTTATTATTCG
1 CTCATAATTTTTAGTAC-T-TTCTTAATTTTTATTATTCG
* * **
77596696 CTTATAATTTTT-GATACTTTCTTAATTTTTTTTATTTT
1 CTCATAATTTTTAG-TACTTTCTTAATTTTTATTATTCG
*
77596734 CTCATAATTTTTAGTATTTTCTTATATTTT
1 CTCATAATTTTTAGTACTTTCTTA-ATTTT
77596764 CCGGTAGTCC
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
38 36 0.63
39 8 0.14
40 13 0.23
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (38 bp):
CTCATAATTTTTAGTACTTTCTTAATTTTTATTATTCG
Found at i:77596734 original size:18 final size:18
Alignment explanation
Indices: 77596663--77596763 Score: 60
Period size: 20 Copynumber: 5.2 Consensus size: 18
77596653 TTCCTCATAG
*
77596663 TTTTTAGTACTTATTCATAA
1 TTTTTAGTA-TT-TTCTTAA
* **
77596683 TTTTTATTATTCGCTTATAA
1 TTTTTAGTATTTTC-T-TAA
*
77596703 TTTTT-GATACTTTCTTAA
1 TTTTTAG-TATTTTCTTAA
**
77596721 TTTTTTTTATTTTCTCATAA
1 TTTTTAGTATTTTCT--TAA
77596741 TTTTTAGTATTTTCTTATA
1 TTTTTAGTATTTTCTTA-A
77596760 TTTT
1 TTTT
77596764 CCGGTAGTCC
Statistics
Matches: 62, Mismatches: 12, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
18 18 0.29
19 8 0.13
20 36 0.58
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (18 bp):
TTTTTAGTATTTTCTTAA
Found at i:77598225 original size:13 final size:13
Alignment explanation
Indices: 77598207--77598241 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
77598197 AGTTTGGCAA
77598207 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
77598220 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
77598233 TGCTTTTGA
1 TGCTTTTGA
77598242 AATTTGAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.43
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:77599207 original size:7 final size:7
Alignment explanation
Indices: 77599170--77599212 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
77599160 TTGTTACTTA
77599170 ATAT-TT
1 ATATATT
77599176 ATATATT
1 ATATATT
77599183 AGTATATT
1 A-TATATT
77599191 ATATCA-T
1 ATAT-ATT
77599198 ATATATT
1 ATATATT
77599205 ATATATT
1 ATATATT
77599212 A
1 A
77599213 CAAGGTTGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
6 5 0.15
7 20 0.61
8 8 0.24
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (7 bp):
ATATATT
Found at i:77601084 original size:33 final size:33
Alignment explanation
Indices: 77601041--77601300 Score: 169
Period size: 33 Copynumber: 7.9 Consensus size: 33
77601031 TGGCATGCTA
* *
77601041 GGCAATTCAGGAACTTTAGGTAATTCAGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
** * * *
77601074 GGCAACTCAGGAGTTTTGGGCAATTCTGGTTTC
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
* * * *
77601107 GGTACCTCTGGAACTTTAGGCAATTCTGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
** * * * *
77601140 GTTAACTCGGGAATTTTAGGTAATTGAGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
* * * * * * * * *
77601173 GGTAATTTAGGAGCTTTTGGAAATTCTGGCTTA
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
* * *
77601206 GGCACCTCAGGAACTTTTGGTAATTCAGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
* *** * *
77601239 GGCAGCTCAGTCGCTTTGGGCAATTCTGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
* * * *
77601272 GGTACCTCAGGAATTTTTGGCAATTCAGG
1 GGCAACTCAGGAACTTTAGGCAATTCAGG
77601301 AGCTTTGGGC
Statistics
Matches: 170, Mismatches: 57, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
33 170 1.00
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (33 bp):
GGCAACTCAGGAACTTTAGGCAATTCAGGTTTT
Found at i:77601231 original size:99 final size:99
Alignment explanation
Indices: 77601050--77601239 Score: 247
Period size: 99 Copynumber: 1.9 Consensus size: 99
77601040 AGGCAATTCA
* * * *
77601050 GGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGTTTCGGTACCTC
1 GGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGAAATTCTGGCTTAGGCACCTC
* *
77601115 TGGAACTTTAGGCAATTCTGGTTTTGTTAACTCG
66 AGGAACTTTAGGCAATTCAGGTTTTGTTAACTCG
* * * * *
77601149 GGAATTTTAGGTAATTGAGGTTTTGGTAATTTAGGAGCTTTT-GGAAATTCTGGCTTAGGCACCT
1 GGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAG-TTTTGGGAAATTCTGGCTTAGGCACCT
* *
77601213 CAGGAACTTTTGGTAATTCAGGTTTTG
65 CAGGAACTTTAGGCAATTCAGGTTTTG
77601240 GCAGCTCAGT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 73 0.95
100 4 0.05
ACGTcount: A:0.22, C:0.13, G:0.27, T:0.38
Consensus pattern (99 bp):
GGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGAAATTCTGGCTTAGGCACCTC
AGGAACTTTAGGCAATTCAGGTTTTGTTAACTCG
Found at i:77601306 original size:51 final size:51
Alignment explanation
Indices: 77601251--77601348 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
77601241 CAGCTCAGTC
* * * * *
77601251 GCTTTGGGCAA-TTCTGGTTTTGGTACCTCAGGAATTTTTGGCAATTCAGGA
1 GCTTTGGGCAATTTCT-GCTTAGGCACCTCAGGAACTTTAGGCAATTCAGGA
77601302 GCTTTGGGCAATTTCTGCTTAGGCACCTCAGGAACTTTAGGCAATTC
1 GCTTTGGGCAATTTCTGCTTAGGCACCTCAGGAACTTTAGGCAATTC
77601349 TGGCTTTGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 37 0.90
52 4 0.10
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (51 bp):
GCTTTGGGCAATTTCTGCTTAGGCACCTCAGGAACTTTAGGCAATTCAGGA
Found at i:77601333 original size:33 final size:32
Alignment explanation
Indices: 77601287--77601636 Score: 254
Period size: 33 Copynumber: 10.6 Consensus size: 32
77601277 CTCAGGAATT
* *
77601287 TTTGGCAATTCAGGAGCTTTGGGCAATTTCTGC
1 TTTGGCAACTCAGGAACTTTGGGCAA-TTCTGC
* * *
77601320 TTAGGCACCTCAGGAACTTTAGGCAATTCTGGC
1 TTTGGCAACTCAGGAACTTTGGGCAATTCT-GC
* * ** *
77601353 TTTGGTAACTCAGGAACTTTTGGTGATTCAAGC
1 TTTGGCAACTCAGGAACTTTGGGCAATTC-TGC
* * * *
77601386 TTTGGCAACTCGGGAGCTTTGGGTAATTCAGGC
1 TTTGGCAACTCAGGAACTTTGGGCAATTC-TGC
* * *
77601419 TTGGGC-ACTTCAGGAGCTTTGGGCAATTCCGGC
1 TTTGGCAAC-TCAGGAACTTTGGGCAATT-CTGC
* * *
77601452 TTAGGCACCTCAGGAACTTTAGGCAATTCTGGC
1 TTTGGCAACTCAGGAACTTTGGGCAATTCT-GC
* * *
77601485 TTAGGCACCTCAGGAACTTTAGGCAATTCTGGC
1 TTTGGCAACTCAGGAACTTTGGGCAATTCT-GC
* * * * *
77601518 TTTGGTAACTCAGGAACTTTTGGTAATTCAGGT
1 TTTGGCAACTCAGGAACTTTGGGCAATTC-TGC
* * *
77601551 TTTGGCAACTCAGGAGCTTTGGGTAATTCAGGC
1 TTTGGCAACTCAGGAACTTTGGGCAATTC-TGC
* * *
77601584 TTGGGC-ACTTCAGGAACTTTAGGAAATTCTGGC
1 TTTGGCAAC-TCAGGAACTTTGGGCAATTCT-GC
* *
77601617 TTTGGTAACTCCGGAACTTT
1 TTTGGCAACTCAGGAACTTT
77601637 TGGTGCTTCA
Statistics
Matches: 262, Mismatches: 45, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
32 9 0.03
33 249 0.95
34 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (32 bp):
TTTGGCAACTCAGGAACTTTGGGCAATTCTGC
Found at i:77601390 original size:117 final size:117
Alignment explanation
Indices: 77601169--77601390 Score: 257
Period size: 117 Copynumber: 1.9 Consensus size: 117
77601159 GTAATTGAGG
* * * * *
77601169 TTTTGGTAATTTAGGAGCTTTTGGAAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAG
1 TTTTGGCAATTCAGGAGCTTTGGGAAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
* * *** ** *
77601234 GTTTTGGCAGCTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAAT
66 GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGCTTTGGTACCTCAGGAAT
* *
77601286 TTTTGGCAATTCAGGAGCTTTGGGCAATTTCT-GCTTAGGCACCTCAGGAACTTTAGGCAATTCT
1 TTTTGGCAATTCAGGAGCTTTGGG-AAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCA
* * **
77601350 GGCTTTGGTAACTCAGGAACTTTTGGTGATTCAAGCTTTGG
65 GGCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGCTTTGG
77601391 CAACTCGGGA
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
117 79 0.93
118 6 0.07
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (117 bp):
TTTTGGCAATTCAGGAGCTTTGGGAAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGCTTTGGTACCTCAGGAAT
Found at i:77601420 original size:66 final size:66
Alignment explanation
Indices: 77601287--77601636 Score: 328
Period size: 66 Copynumber: 5.3 Consensus size: 66
77601277 CTCAGGAATT
* * * * * * *
77601287 TTTGGCAATTCAGGAGCTTTGGGCAATTTC-TGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
1 TTTGGCAACTCAGGAACTTTGGGTAA-TTCAGGCTTTGGCAACTCAGGAACTTTAGGTAATTCTG
77601351 GC
65 GC
* * * * * * * *
77601353 TTTGGTAACTCAGGAACTTTTGGTGATTCAAGCTTTGGCAACTCGGGAGCTTTGGGTAATTCAGG
1 TTTGGCAACTCAGGAACTTTGGGTAATTCAGGCTTTGGCAACTCAGGAACTTTAGGTAATTCTGG
77601418 C
66 C
* * * * * * *
77601419 TTGGGC-ACTTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
1 TTTGGCAAC-TCAGGAACTTTGGGTAATTCAGGCTTTGGCAACTCAGGAACTTTAGGTAATTCTG
77601483 GC
65 GC
* * * * * * * *
77601485 TTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGG
1 TTTGGCAACTCAGGAACTTTGGGTAATTCAGGCTTTGGCAACTCAGGAACTTTAGGTAATTCTGG
*
77601550 T
66 C
* * *
77601551 TTTGGCAACTCAGGAGCTTTGGGTAATTCAGGCTTGGGC-ACTTCAGGAACTTTAGGAAATTCTG
1 TTTGGCAACTCAGGAACTTTGGGTAATTCAGGCTTTGGCAAC-TCAGGAACTTTAGGTAATTCTG
77601615 GC
65 GC
* *
77601617 TTTGGTAACTCCGGAACTTT
1 TTTGGCAACTCAGGAACTTT
77601637 TGGTGCTTCA
Statistics
Matches: 224, Mismatches: 56, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
65 7 0.03
66 216 0.96
67 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (66 bp):
TTTGGCAACTCAGGAACTTTGGGTAATTCAGGCTTTGGCAACTCAGGAACTTTAGGTAATTCTGG
C
Found at i:77601442 original size:18 final size:18
Alignment explanation
Indices: 77601383--77601447 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
77601373 TGGTGATTCA
* *
77601383 AGCTTT-GGCAACTCGGG
1 AGCTTTGGGCAATTCAGG
*
77601400 AGCTTTGGGTAATTCA-G
1 AGCTTTGGGCAATTCAGG
*
77601417 -GC-TTGGGCACTTCAGG
1 AGCTTTGGGCAATTCAGG
77601433 AGCTTTGGGCAATTC
1 AGCTTTGGGCAATTC
77601448 CGGCTTAGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
15 10 0.26
16 3 0.08
17 9 0.24
18 16 0.42
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.29
Consensus pattern (18 bp):
AGCTTTGGGCAATTCAGG
Found at i:77601475 original size:18 final size:18
Alignment explanation
Indices: 77601452--77601509 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
77601442 CAATTCCGGC
77601452 TTAGGCACCTCAGGAACT
1 TTAGGCACCTCAGGAACT
** *
77601470 TTAGGCAATTCTGG--C-
1 TTAGGCACCTCAGGAACT
77601485 TTAGGCACCTCAGGAACT
1 TTAGGCACCTCAGGAACT
77601503 TTAGGCA
1 TTAGGCA
77601510 ATTCTGGCTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 11 0.35
16 1 0.03
17 1 0.03
18 18 0.58
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (18 bp):
TTAGGCACCTCAGGAACT
Found at i:77601541 original size:18 final size:17
Alignment explanation
Indices: 77601518--77601582 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
77601508 CAATTCTGGC
77601518 TTTGGTAACTCAGGAACT
1 TTTGGTAACTCAGG-ACT
*
77601536 TTTGGTAATTCAGG--T
1 TTTGGTAACTCAGGACT
*
77601551 TTTGGCAACTCAGGAGCT
1 TTTGGTAACTCAGGA-CT
* *
77601569 TTGGGTAATTCAGG
1 TTTGGTAACTCAGG
77601583 CTTGGGCACT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 13 0.34
18 25 0.66
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (17 bp):
TTTGGTAACTCAGGACT
Found at i:77601591 original size:99 final size:99
Alignment explanation
Indices: 77601296--77601639 Score: 341
Period size: 99 Copynumber: 3.5 Consensus size: 99
77601286 TTTTGGCAAT
* * * * * * * *
77601296 TCAGGAGCTTTGGGCAATTTCT-GCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTTTGGTA
1 TCAGGAACTTTAGGCAA-TTCTGGCTTTGGTAACTCAGGAACTTTTGGCAATTCAGGCTTTGGCA
* * * * *
77601360 ACTCAGGAACTTTTGGTGATTCAAGCTTTGGCAAC
65 ACTCAGGAACTTTGGGTAATTCAGGCTTAGGCACC
* * * * * ** * * * *
77601395 TCGGGAGCTTTGGGTAATTCAGGC-TTGGGCACTTCAGGAGCTTTGGGCAATTCCGGCTTAGGCA
1 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAAC-TCAGGAACTTTTGGCAATTCAGGCTTTGGCA
* * * *
77601459 CCTCAGGAACTTTAGGCAATTCTGGCTTAGGCACC
65 ACTCAGGAACTTTGGGTAATTCAGGCTTAGGCACC
* *
77601494 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAA
1 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGCAATTCAGGCTTTGGCAA
* * *
77601559 CTCAGGAGCTTTGGGTAATTCAGGCTTGGGCACT
66 CTCAGGAACTTTGGGTAATTCAGGCTTAGGCACC
* *
77601593 TCAGGAACTTTAGGAAATTCTGGCTTTGGTAACTCCGGAACTTTTGG
1 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGG
77601640 TGCTTCAGAT
Statistics
Matches: 200, Mismatches: 42, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
98 7 0.04
99 187 0.94
100 6 0.03
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (99 bp):
TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGCAATTCAGGCTTTGGCAA
CTCAGGAACTTTGGGTAATTCAGGCTTAGGCACC
Found at i:77601633 original size:132 final size:131
Alignment explanation
Indices: 77601286--77601636 Score: 470
Period size: 132 Copynumber: 2.7 Consensus size: 131
77601276 CCTCAGGAAT
* *
77601286 TTTTGGCAATTCAGGAGCTTTGGGCAATTTCTGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
1 TTTTGGCAACTCAGGAGCTTTGGGCAA-TTCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* ** * *
77601351 GCTTTGGTAACTCAGGAACTTTTGGTGATTCAAGCTTTGGCAACTCGGGAGCTTTGGGTAATTCA
65 GCTTTGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGCAACTCAGGAACTTTGGGTAATTCA
77601416 GG
130 GG
* *
77601418 CTTGGGC-ACTTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCT
1 TTTTGGCAAC-TCAGGAGCTTTGGGCAATT-CGGCTTAGGCACCTCAGGAACTTTAGGCAATTCT
* * * ** * *
77601482 GGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTC
64 GGCTTTGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGCAACTCAGGAACTTTGGGTAATTC
77601547 AGG
129 AGG
* * * *
77601550 TTTTGGCAACTCAGGAGCTTTGGGTAATTCAGGCTTGGGCACTTCAGGAACTTTAGGAAATTCTG
1 TTTTGGCAACTCAGGAGCTTTGGGCAATTC-GGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
*
77601615 GCTTTGGTAACTCCGGAACTTT
65 GCTTTGGTAACTCAGGAACTTT
77601637 TGGTGCTTCA
Statistics
Matches: 189, Mismatches: 26, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
131 4 0.02
132 183 0.97
133 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (131 bp):
TTTTGGCAACTCAGGAGCTTTGGGCAATTCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGG
CTTTGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGCAACTCAGGAACTTTGGGTAATTCAG
G
Found at i:77601640 original size:99 final size:99
Alignment explanation
Indices: 77601455--77601674 Score: 296
Period size: 99 Copynumber: 2.2 Consensus size: 99
77601445 TTCCGGCTTA
* * * * *
77601455 GGCACCTCAGGAACTTTAGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTT
1 GGCAACTCAGGAGCTTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGAAATTCTGGCTT
*
77601520 TGGTAACTCAGGAACTTTTGGTAATTCAGGTTTT
66 TGGTAACTCAGGAACTTTTGGTAATTCAGATTTT
* * *
77601554 GGCAACTCAGGAGCTTTGGGTAATTCAGGCTTGGGCACTTCAGGAACTTTAGGAAATTCTGGCTT
1 GGCAACTCAGGAGCTTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGAAATTCTGGCTT
* **
77601619 TGGTAACTCCGGAACTTTTGGTGCTTCAGATTTT
66 TGGTAACTCAGGAACTTTTGGTAATTCAGATTTT
* * * *
77601653 GACAATTTAGGAGCATTGGGCA
1 GGCAACTCAGGAGCTTTGGGCA
77601675 TCTCTGGAAC
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
99 104 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (99 bp):
GGCAACTCAGGAGCTTTGGGCAATTCAGGCTTAGGCACCTCAGGAACTTTAGGAAATTCTGGCTT
TGGTAACTCAGGAACTTTTGGTAATTCAGATTTT
Found at i:77601780 original size:51 final size:51
Alignment explanation
Indices: 77601707--77601855 Score: 181
Period size: 51 Copynumber: 2.9 Consensus size: 51
77601697 AGGTTTTTTC
* *
77601707 AACTCGGGAATCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGGA
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCAGA
* * * * * *
77601758 AACTCAGGAACCTTGGGTAATTCTGGTTTTGGCAATTCTGGAACTTTCAGA
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCAGA
* * * * *
77601809 AACTTGGGAACCTCAGGCAATTCGGGCTTTGGCAACTCCGGAACTTT
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTT
77601856 AGGCAATTCA
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (51 bp):
AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCAGA
Found at i:77601890 original size:33 final size:33
Alignment explanation
Indices: 77601823--77601903 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
77601813 TGGGAACCTC
* * *
77601823 AGGCAATTCGGGCTTTGGCAACTCCGGAACTTT
1 AGGCAATTCAGGTTTTGGCAACTCAGGAACTTT
* *
77601856 AGGCAATTCAGGTTTTGGCAACTCAGGCATTTT
1 AGGCAATTCAGGTTTTGGCAACTCAGGAACTTT
* *
77601889 AGGTATTTCAGGTTT
1 AGGCAATTCAGGTTT
77601904 CGGGATTTCC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (33 bp):
AGGCAATTCAGGTTTTGGCAACTCAGGAACTTT
Found at i:77604428 original size:46 final size:47
Alignment explanation
Indices: 77604375--77604495 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
77604365 TGATGTCATA
* * * *
77604375 GTATCTTTCAACTATGGTTTTACTCGTTTT-CTGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTTCCCGTCATGTTGCCATG
* *
77604421 GTATCTTTCAACCATTGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTTCCCGTCATGTTGCCATG
*
77604468 GTATCTTTCAACCATGGTCTTACACATT
1 GTATCTTTCAACCATGGTCTTACTCATT
77604496 CCATATCAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 25 0.38
47 40 0.62
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (47 bp):
GTATCTTTCAACCATGGTCTTACTCATTTTCCCGTCATGTTGCCATG
Found at i:77607518 original size:24 final size:25
Alignment explanation
Indices: 77607491--77607539 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
77607481 CTTTTTTTAT
*
77607491 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
77607515 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
77607540 AAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:77607532 original size:25 final size:23
Alignment explanation
Indices: 77607503--77607567 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
77607493 AATAAAAAAC
*
77607503 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
77607528 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
77607549 -TTAAAACA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
77607568 AAAAATAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 5 0.13
24 3 0.08
25 11 0.29
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:77607562 original size:19 final size:20
Alignment explanation
Indices: 77607529--77607578 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
77607519 TCAAATACAT
77607529 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
77607549 TTAAAACA-AAAAACAAATA
1 TTAAAACATAAAAACAAATA
77607568 --AAAA-ATAAAAA
1 TTAAAACATAAAAA
77607579 ATAAGACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 1 0.03
17 9 0.31
19 11 0.38
20 8 0.28
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:77608930 original size:21 final size:21
Alignment explanation
Indices: 77608904--77608945 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77608894 GGCCCAGACC
77608904 AACAAACAAACAAAAACAAAA
1 AACAAACAAACAAAAACAAAA
* * *
77608925 AACAAACTAACTAAAATAAAA
1 AACAAACAAACAAAAACAAAA
77608946 GTCCATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.76, C:0.17, G:0.00, T:0.07
Consensus pattern (21 bp):
AACAAACAAACAAAAACAAAA
Found at i:77612540 original size:48 final size:48
Alignment explanation
Indices: 77612478--77612623 Score: 229
Period size: 48 Copynumber: 3.0 Consensus size: 48
77612468 TACAAGATAA
**
77612478 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
77612526 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAGTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
77612574 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
77612622 AT
1 AT
77612624 GTGTGTATAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:77612814 original size:37 final size:37
Alignment explanation
Indices: 77612764--77612873 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 37
77612754 GGAAATATAT
77612764 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
77612801 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
77612838 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
77612874 TCGAGCTAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:77614553 original size:52 final size:49
Alignment explanation
Indices: 77614497--77614613 Score: 114
Period size: 50 Copynumber: 2.3 Consensus size: 49
77614487 TTAGACTATT
* **
77614497 TTATTTATTTTAAATTTCATATATTGA-ACTTTTTTAAATTGTTTTAGATACA
1 TTATTTATTTTAAATTTCATATACT-ATAC-ACTTTAAATTGTTTT-G-TACA
**
77614549 TTATTTTAAATT--ATTTCATATACTATACACTTTAAATTGTTTTGTACA
1 TTA-TTTATTTTAAATTTCATATACTATACACTTTAAATTGTTTTGTACA
*
77614597 TTGTTTATTTTAAATTT
1 TTATTTATTTTAAATTT
77614614 GTTTAATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
47 6 0.11
48 6 0.11
49 5 0.09
50 14 0.26
51 13 0.25
52 3 0.06
53 6 0.11
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (49 bp):
TTATTTATTTTAAATTTCATATACTATACACTTTAAATTGTTTTGTACA
Found at i:77617233 original size:21 final size:20
Alignment explanation
Indices: 77617186--77617253 Score: 57
Period size: 21 Copynumber: 3.4 Consensus size: 20
77617176 TAATATACTG
* *
77617186 TTATTTAATATTTACATTATA
1 TTATATAATATTTATA-TATA
**
77617207 AGATATAATATTTATATAATA
1 TTATATAATATTTATAT-ATA
* *
77617228 TTATATTATA-TCATATATA
1 TTATATAATATTTATATATA
77617247 TTATATA
1 TTATATA
77617254 TTACAAGGTT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
19 9 0.24
20 6 0.16
21 22 0.59
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (20 bp):
TTATATAATATTTATATATA
Found at i:77617247 original size:19 final size:16
Alignment explanation
Indices: 77617209--77617252 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
77617199 ACATTATAAG
*
77617209 ATATAATATTTATATA
1 ATATTATATTTATATA
77617225 ATATTATATTATATCATA
1 ATATTATATT-TAT-ATA
77617243 TATATTATAT
1 -ATATTATAT
77617253 ATTACAAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 3 0.12
18 3 0.12
19 9 0.38
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATTATATTTATATA
Found at i:77618272 original size:13 final size:13
Alignment explanation
Indices: 77618251--77618284 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77618241 TCATTTGAAG
77618251 AAATTTATAAATT
1 AAATTTATAAATT
* *
77618264 AAGTTTATAATTT
1 AAATTTATAAATT
77618277 AAATTTAT
1 AAATTTAT
77618285 TCATATATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
AAATTTATAAATT
Found at i:77619679 original size:33 final size:33
Alignment explanation
Indices: 77619642--77619925 Score: 253
Period size: 33 Copynumber: 8.6 Consensus size: 33
77619632 GCTAGGCAAT
* * *
77619642 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
** * * *
77619675 TCAGGAGTTTTGGGCAATTCTGGTTTCGGTACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* *
77619708 TCTGGAACTTTAGGCAATTCTGGTTTTGTTAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* * * * ** *
77619741 CCGGGAATTTTAGGTAATTGAGGTTTTGGTAAT
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* * * * * *
77619774 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* * * *
77619807 TCAGGAACTTTTGGTAATTCAGGTTTTGGCAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
** * *
77619840 TCAGTCACTTTGGGCAATTCTGGTTTTGGTACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* *
77619873 TCAGGAATTTTAGGCAATTCTGGTTTTGTTAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* *
77619906 TCAGGAATTTTTGGCAATTC
1 TCAGGAACTTTAGGCAATTC
77619926 AGGAGCTTTG
Statistics
Matches: 195, Mismatches: 56, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 195 1.00
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (33 bp):
TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
Found at i:77619927 original size:18 final size:18
Alignment explanation
Indices: 77619906--77620198 Score: 85
Period size: 18 Copynumber: 17.6 Consensus size: 18
77619896 TTTTGTTAAC
* *
77619906 TCAGGAATTTTTGGCAAT
1 TCAGGAACTTTGGGCAAT
*
77619924 TCAGGAGCTTTGGGCAAT
1 TCAGGAACTTTGGGCAAT
* * *
77619942 TCTGG--C-TTAGGCACT
1 TCAGGAACTTTGGGCAAT
*
77619957 TCAGGAACTTTAGGCAAT
1 TCAGGAACTTTGGGCAAT
* * *
77619975 TCTGG--CTTT-GGTAAC
1 TCAGGAACTTTGGGCAAT
* **
77619990 TCAGGAACTTTTGGTGAT
1 TCAGGAACTTTGGGCAAT
* * *
77620008 TC---AAGTTTTGGCAAC
1 TCAGGAACTTTGGGCAAT
* * *
77620023 TCGGGAGCTTTGGGTAAT
1 TCAGGAACTTTGGGCAAT
*
77620041 TCAGG--C-TTGGGCACT
1 TCAGGAACTTTGGGCAAT
*
77620056 TCAGGAGCTTTGGGCAAT
1 TCAGGAACTTTGGGCAAT
* * * **
77620074 TC-CG-AC-TTAGGTACC
1 TCAGGAACTTTGGGCAAT
*
77620089 TCAGGAACTTTAGGCAAT
1 TCAGGAACTTTGGGCAAT
* * *
77620107 TCTGG--CTTT-GGTAAC
1 TCAGGAACTTTGGGCAAT
* *
77620122 TCAGGAACTTTTGGTAAT
1 TCAGGAACTTTGGGCAAT
*
77620140 TCAGG-A-TTT-GGCAAC
1 TCAGGAACTTTGGGCAAT
* * *
77620155 TCGGGAGCTTTGGGTAAT
1 TCAGGAACTTTGGGCAAT
*
77620173 TCAGG--C-TTGGGCACT
1 TCAGGAACTTTGGGCAAT
77620188 TCAGGAACTTT
1 TCAGGAACTTT
77620199 AGGAAATTCT
Statistics
Matches: 200, Mismatches: 51, Indels: 48
0.67 0.17 0.16
Matches are distributed among these distances:
15 77 0.38
16 16 0.08
17 18 0.09
18 89 0.44
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (18 bp):
TCAGGAACTTTGGGCAAT
Found at i:77619973 original size:33 final size:32
Alignment explanation
Indices: 77619915--77620207 Score: 208
Period size: 33 Copynumber: 8.9 Consensus size: 32
77619905 CTCAGGAATT
* * *
77619915 TTTGGCAATTCAGGAGCTTTGGGCAATTCTGGC
1 TTTGGC-ACTCAGGAACTTTGGGCAATTCAGGC
* * *
77619948 TTAGGCACTTCAGGAACTTTAGGCAATTCTGGC
1 TTTGGCAC-TCAGGAACTTTGGGCAATTCAGGC
* * ** * *
77619981 TTTGGTAACTCAGGAACTTTTGGTGATTCAAGT
1 TTTGG-CACTCAGGAACTTTGGGCAATTCAGGC
* * *
77620014 TTTGGCAACTCGGGAGCTTTGGGTAATTCAGGC
1 TTTGGC-ACTCAGGAACTTTGGGCAATTCAGGC
* * * *
77620047 TTGGGCACTTCAGGAGCTTTGGGCAATTCCGAC
1 TTTGGCAC-TCAGGAACTTTGGGCAATTCAGGC
* * * *
77620080 TTAGGTACCTCAGGAACTTTAGGCAATTCTGGC
1 TTTGGCA-CTCAGGAACTTTGGGCAATTCAGGC
* * * *
77620113 TTTGGTAACTCAGGAACTTTTGGTAATTCAGGA
1 TTTGG-CACTCAGGAACTTTGGGCAATTCAGGC
* * *
77620146 TTTGGCAACTCGGGAGCTTTGGGTAATTCAGGC
1 TTTGGC-ACTCAGGAACTTTGGGCAATTCAGGC
* * *
77620179 TTGGGCACTTCAGGAACTTTAGGAAATTC
1 TTTGGCAC-TCAGGAACTTTGGGCAATTC
77620208 TAGATTTGGT
Statistics
Matches: 206, Mismatches: 46, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
32 5 0.02
33 197 0.96
34 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (32 bp):
TTTGGCACTCAGGAACTTTGGGCAATTCAGGC
Found at i:77620010 original size:84 final size:84
Alignment explanation
Indices: 77619830--77620003 Score: 242
Period size: 84 Copynumber: 2.1 Consensus size: 84
77619820 GTAATTCAGG
* * * * * *
77619830 TTTTGGCAACTCAGTCA-CTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTAGGCAATTCT
1 TTTTGGCAATTCAG-GAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCT
* * *
77619894 GGTTTTGTTAACTCAGGAAT
65 GGCTTTGGTAACTCAGGAAC
*
77619914 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACTTCAGGAACTTTAGGCAATTCTG
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
77619979 GCTTTGGTAACTCAGGAAC
66 GCTTTGGTAACTCAGGAAC
77619998 TTTTGG
1 TTTTGG
77620004 TGATTCAAGT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
83 1 0.01
84 78 0.99
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (84 bp):
TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
GCTTTGGTAACTCAGGAAC
Found at i:77620042 original size:150 final size:150
Alignment explanation
Indices: 77619764--77620042 Score: 360
Period size: 150 Copynumber: 1.9 Consensus size: 150
77619754 GTAATTGAGG
* * * *
77619764 TTTTGGTAATTCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAG
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
* ** ** * * *
77619829 GTTTTGGCAACTCAGTCACTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTAGGCAATTCT
66 GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGTTTTGGCAACTCAGGAACTTTAGGCAATTCT
77619894 GGTTTTGTTAACTCAGGAAT
131 GGTTTTGTTAACTCAGGAAT
* *
77619914 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACTTCAGGAACTTTAGGCAATTCTG
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
* * ** * * * *
77619979 GCTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGCTTTGGGTAATTC
66 GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGTTTTGGCAACTCAGGAACTTTAGGCAATTC
77620043 AGGCTTGGGC
Statistics
Matches: 107, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
150 107 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (150 bp):
TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGTTTTGGCAACTCAGGAACTTTAGGCAATTCT
GGTTTTGTTAACTCAGGAAT
Found at i:77620045 original size:84 final size:83
Alignment explanation
Indices: 77619873--77620027 Score: 197
Period size: 84 Copynumber: 1.9 Consensus size: 83
77619863 TTTTGGTACC
* * * *
77619873 TCAGGAATTTTAGGCAATTCTGGTTTTGTTAACTCAGGAATTTTTGGCAATTCAGGAGCTTTGGG
1 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGCAATTCA-GAGCTTTGGG
* * *
77619938 CAATTCTGGCTTAGGCACT
65 CAACTCGGGCTTAGGCAAT
** *
77619957 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTGATTCA-AG-TTTTGGC
1 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGCAATTCAGAGCTTTGGGC
77620020 AACTCGGG
66 AACTCGGG
77620028 AGCTTTGGGT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 12 0.19
82 2 0.03
84 48 0.77
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (83 bp):
TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGCAATTCAGAGCTTTGGGC
AACTCGGGCTTAGGCAAT
Found at i:77620060 original size:150 final size:150
Alignment explanation
Indices: 77619764--77620075 Score: 338
Period size: 150 Copynumber: 2.1 Consensus size: 150
77619754 GTAATTGAGG
* * * *
77619764 TTTTGGTAATTCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAG
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
* ** ** * * * *
77619829 GTTTTGGCAACTCAGTCACTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTAGGCAATTCT
66 GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGTTTTGGCAACTCAGGAACTTTAGGCAATTCA
* ** *
77619894 GGTTTTGTTAACTCAGGAAT
131 GGTCTTGGGAACTCAGGAAC
* *
77619914 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACTTCAGGAACTTTAGGCAATTCTG
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
* * ** * * * *
77619979 GCTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGCTTTGGGTAATTCA
66 GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGTTTTGGCAACTCAGGAACTTTAGGCAATTCA
* *
77620044 GG-CTTGGGCACTTCAGGAGC
131 GGTCTTGGGAAC-TCAGGAAC
*
77620064 TTTGGGCAATTC
1 TTTTGGCAATTC
77620076 CGACTTAGGT
Statistics
Matches: 131, Mismatches: 30, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
149 5 0.04
150 126 0.96
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (150 bp):
TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCAG
GCTTTGGCAACTCAGGAACTTTGGGCAATTCAAGTTTTGGCAACTCAGGAACTTTAGGCAATTCA
GGTCTTGGGAACTCAGGAAC
Found at i:77620075 original size:132 final size:132
Alignment explanation
Indices: 77619918--77620208 Score: 483
Period size: 132 Copynumber: 2.2 Consensus size: 132
77619908 AGGAATTTTT
* * *
77619918 GGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACTTCAGGAACTTTAGGCAATTCTGGCTT
1 GGCACTTCAGGAGCTTTGGGCAATTCTGACTTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTT
* *
77619983 TGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCT
66 TGGTAACTCAGGAACTTTTGGTAATTCAAGATTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCT
77620048 TG
131 TG
* *
77620050 GGCACTTCAGGAGCTTTGGGCAATTCCGACTTAGGTACCTCAGGAACTTTAGGCAATTCTGGCTT
1 GGCACTTCAGGAGCTTTGGGCAATTCTGACTTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTT
*
77620115 TGGTAACTCAGGAACTTTTGGTAATTCAGGATTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCT
66 TGGTAACTCAGGAACTTTTGGTAATTCAAGATTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCT
77620180 TG
131 TG
* * *
77620182 GGCACTTCAGGAACTTTAGGAAATTCT
1 GGCACTTCAGGAGCTTTGGGCAATTCT
77620209 AGATTTGGTA
Statistics
Matches: 147, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 147 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (132 bp):
GGCACTTCAGGAGCTTTGGGCAATTCTGACTTAGGCACCTCAGGAACTTTAGGCAATTCTGGCTT
TGGTAACTCAGGAACTTTTGGTAATTCAAGATTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCT
TG
Found at i:77620092 original size:99 final size:99
Alignment explanation
Indices: 77619914--77620231 Score: 314
Period size: 99 Copynumber: 3.2 Consensus size: 99
77619904 ACTCAGGAAT
* * * * * *
77619914 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACTTCAGGAACTTTAGGCAATTCTG
1 TTTTGGCAACTCAGGAGCTTTGGGTAATTCAGGCTTAGGCACTTCAGGAGCTTTGGGCAATTCAG
* * * **
77619979 GCTTTGGTAACTCAGGAACTTTTGGTGATTCAAG
66 GCTTAGGTACCTCAGGAACTTTAGGCAATTCAAG
* * *
77620013 TTTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCTTGGGCACTTCAGGAGCTTTGGGCAATTCCG
1 TTTTGGCAACTCAGGAGCTTTGGGTAATTCAGGCTTAGGCACTTCAGGAGCTTTGGGCAATTCAG
* **
77620078 ACTTAGGTACCTCAGGAACTTTAGGCAATTCTGG
66 GCTTAGGTACCTCAGGAACTTTAGGCAATTCAAG
* * * * * * * *
77620112 CTTTGGTAACTCAGGAACTTTTGGTAATTCAGGATTTGGCAAC-TCGGGAGCTTTGGGTAATTCA
1 TTTTGGCAACTCAGGAGCTTTGGGTAATTCAGGCTTAGGC-ACTTCAGGAGCTTTGGGCAATTCA
* * * * *
77620176 GGCTTGGGCACTTCAGGAACTTTAGGAAATTCTAG
65 GGCTTAGGTACCTCAGGAACTTTAGGCAATTCAAG
* * * *
77620211 ATTTGGTAACTCCGGAACTTT
1 TTTTGGCAACTCAGGAGCTTT
77620232 TGGTGCTTCA
Statistics
Matches: 184, Mismatches: 34, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
99 182 0.99
100 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (99 bp):
TTTTGGCAACTCAGGAGCTTTGGGTAATTCAGGCTTAGGCACTTCAGGAGCTTTGGGCAATTCAG
GCTTAGGTACCTCAGGAACTTTAGGCAATTCAAG
Found at i:77620228 original size:33 final size:32
Alignment explanation
Indices: 77619957--77620246 Score: 175
Period size: 33 Copynumber: 8.8 Consensus size: 32
77619947 CTTAGGCACT
* * *
77619957 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAAC
1 TCAGGAACTTTAGGTAATTC-AGATTTGGTAAC
* * * *
77619990 TCAGGAACTTTTGGTGATTCAAGTTTTGGCAAC
1 TCAGGAACTTTAGGTAATTC-AGATTTGGTAAC
* * * ** **
77620023 TCGGGAGCTTTGGGTAATTCAGGCTTGGGCAC
1 TCAGGAACTTTAGGTAATTCAGATTTGGTAAC
* * * * * *
77620055 TTCAGGAGCTTTGGGCAATTCCGACTTAGGTACC
1 -TCAGGAACTTTAGGTAATTCAGA-TTTGGTAAC
* * *
77620089 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAAC
1 TCAGGAACTTTAGGTAATTC-AGATTTGGTAAC
* *
77620122 TCAGGAACTTTTGGTAATTCAGGATTTGGCAAC
1 TCAGGAACTTTAGGTAATTCA-GATTTGGTAAC
* * * ** **
77620155 TCGGGAGCTTTGGGTAATTCAGGCTTGGGCAC
1 TCAGGAACTTTAGGTAATTCAGATTTGGTAAC
*
77620187 TTCAGGAACTTTAGGAAATTCTAGATTTGGTAAC
1 -TCAGGAACTTTAGGTAATTC-AGATTTGGTAAC
* * **
77620221 TCCGGAACTTTTGGTGCTTCAGATTT
1 TCAGGAACTTTAGGTAATTCAGATTT
77620247 TGACAATTTA
Statistics
Matches: 196, Mismatches: 55, Indels: 13
0.74 0.21 0.05
Matches are distributed among these distances:
32 21 0.11
33 162 0.83
34 13 0.07
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (32 bp):
TCAGGAACTTTAGGTAATTCAGATTTGGTAAC
Found at i:77620242 original size:66 final size:65
Alignment explanation
Indices: 77619990--77620231 Score: 243
Period size: 66 Copynumber: 3.7 Consensus size: 65
77619980 CTTTGGTAAC
* * *
77619990 TCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCTTGGGCAC
1 TCAGGAACTTTTGGTAATTC-AGATTTGGCAACTCGGGAACTTTGGGTAATTCAGGCTTGGGCAC
77620055 T
65 T
* * * * * * * * * * * **
77620056 TCAGGAGCTTTGGGCAATTCCGACTTAGGTACCTCAGGAACTTTAGGCAATTCTGGCTTTGGTAA
1 TCAGGAACTTTTGGTAATTCAGA-TTTGGCAACTCGGGAACTTTGGGTAATTCAGGC-TTGGGCA
77620121 C-
64 CT
*
77620122 TCAGGAACTTTTGGTAATTCAGGATTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCTTGGGCAC
1 TCAGGAACTTTTGGTAATTCA-GATTTGGCAACTCGGGAACTTTGGGTAATTCAGGCTTGGGCAC
77620187 T
65 T
* * * *
77620188 TCAGGAACTTTAGGAAATTCTAGATTTGGTAACTCCGGAACTTT
1 TCAGGAACTTTTGGTAATTC-AGATTTGGCAACTCGGGAACTTT
77620232 TGGTGCTTCA
Statistics
Matches: 136, Mismatches: 35, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
65 7 0.05
66 120 0.88
67 9 0.07
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (65 bp):
TCAGGAACTTTTGGTAATTCAGATTTGGCAACTCGGGAACTTTGGGTAATTCAGGCTTGGGCACT
Found at i:77620261 original size:99 final size:99
Alignment explanation
Indices: 77619957--77620269 Score: 270
Period size: 99 Copynumber: 3.2 Consensus size: 99
77619947 CTTAGGCACT
* * * * * * * * ** * * *
77619957 TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAA
1 TCAGGAGCTTTGGGCAATTCAGACTTAGGCACCTCAGGAACTTTAGGAAATTCTAGATTTGGTAA
* * * * * *
77620022 CTCGGGAGCTTTGGGTAATTCAGGCTTGGGC-AC
66 CTCAGGAACTTTTGGTAATTCAGGATTTGACAAC
* * * * *
77620055 TTCAGGAGCTTTGGGCAATTCCGACTTAGGTACCTCAGGAACTTTAGGCAATTCTGGCTTTGGTA
1 -TCAGGAGCTTTGGGCAATTCAGACTTAGGCACCTCAGGAACTTTAGGAAATTCTAGATTTGGTA
*
77620120 ACTCAGGAACTTTTGGTAATTCAGGATTTGGCAAC
65 ACTCAGGAACTTTTGGTAATTCAGGATTTGACAAC
* * * * *
77620155 TCGGGAGCTTTGGGTAATTCAGGCTTGGGCACTTCAGGAACTTTAGGAAATTCTAGATTTGGTAA
1 TCAGGAGCTTTGGGCAATTCAGACTTAGGCACCTCAGGAACTTTAGGAAATTCTAGATTTGGTAA
* ** *
77620220 CTCCGGAACTTTTGGTGCTTCA-GATTTTGACAAT
66 CTCAGGAACTTTTGGTAATTCAGGA-TTTGACAAC
* *
77620254 TTAGGAGCATTGGGCA
1 TCAGGAGCTTTGGGCA
77620270 TCTCTGGAAC
Statistics
Matches: 175, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
98 2 0.01
99 171 0.98
100 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (99 bp):
TCAGGAGCTTTGGGCAATTCAGACTTAGGCACCTCAGGAACTTTAGGAAATTCTAGATTTGGTAA
CTCAGGAACTTTTGGTAATTCAGGATTTGACAAC
Found at i:77620375 original size:51 final size:51
Alignment explanation
Indices: 77620302--77620450 Score: 217
Period size: 51 Copynumber: 2.9 Consensus size: 51
77620292 AGGTTTTTTC
* * *
77620302 AACTCGGGAATCTTAGGAAATTCAGGCTTTGGCAACTCTGGCACTTTCGGA
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGAA
* * * * *
77620353 AACTCAGGAACCTTGGGTAATTCCGGTTTTGGCAACTCTGGAACTTTCGAA
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGAA
*
77620404 AACTCGGGAACCTTAGGCAATTCAGGCTTTGGCAACTCTGGAACTTT
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTT
77620451 AGGCAATTCA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 85 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (51 bp):
AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGAA
Found at i:77620485 original size:33 final size:33
Alignment explanation
Indices: 77620404--77620501 Score: 124
Period size: 33 Copynumber: 3.0 Consensus size: 33
77620394 AACTTTCGAA
* * *
77620404 AACTCGGGAACCTTAGGCAATTCAGGCTTTGGC
1 AACTCAGGAACTTTAGGCAATTCAGGTTTTGGC
*
77620437 AACTCTGGAACTTTAGGCAATTCAGGTTTTGGC
1 AACTCAGGAACTTTAGGCAATTCAGGTTTTGGC
* * * *
77620470 AACTCAGGCATTTTAGGTATTTCAGGTTTTGG
1 AACTCAGGAACTTTAGGCAATTCAGGTTTTGG
77620502 GATTTCTGGC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (33 bp):
AACTCAGGAACTTTAGGCAATTCAGGTTTTGGC
Done.