Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 24 of 253
Found at i:6704718 original size:15 final size:15
Alignment explanation
Indices: 6704698--6704732 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
6704688 AAACAAAAGA
6704698 AACCTTAATAAACAC
1 AACCTTAATAAACAC
6704713 AACCTTAATAAACAC
1 AACCTTAATAAACAC
6704728 -ACCTT
1 AACCTT
6704733 TTAGTTGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.23
Consensus pattern (15 bp):
AACCTTAATAAACAC
Found at i:6705814 original size:29 final size:29
Alignment explanation
Indices: 6705733--6705847 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 29
6705723 TACATACATG
* * *
6705733 CATATAGCCAACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * * *
6705761 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * * **
6705790 CTTATGGCCTACTAGGCCTAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
6705819 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
6705848 ATACTCATGC
Statistics
Matches: 63, Mismatches: 23, Indels: 1
0.72 0.26 0.01
Matches are distributed among these distances:
28 15 0.24
29 48 0.76
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:6706094 original size:8 final size:8
Alignment explanation
Indices: 6706081--6706110 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
6706071 CGACATTTTA
6706081 GCTTTTCG
1 GCTTTTCG
6706089 GCTTTTCG
1 GCTTTTCG
*
6706097 GCATTTCG
1 GCTTTTCG
6706105 GCTTTT
1 GCTTTT
6706111 GTCGATTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:6713492 original size:29 final size:29
Alignment explanation
Indices: 6713435--6713523 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 29
6713425 GGTTCAATCT
* * * *
6713435 TATTCAAATGGCCCATTTGGTCCAGTTCA
1 TATTCATATGGCCCATTAGGCCCAATTCA
*
6713464 TATTCTTATGGCCCATTAGGCCCAATTCA
1 TATTCATATGGCCCATTAGGCCCAATTCA
* *
6713493 CT-TTCATATGGCCTATTAGGCCCAAATCA
1 -TATTCATATGGCCCATTAGGCCCAATTCA
6713522 TA
1 TA
6713524 ATATACTCAT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 1 0.02
29 48 0.96
30 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.34
Consensus pattern (29 bp):
TATTCATATGGCCCATTAGGCCCAATTCA
Found at i:6717750 original size:15 final size:14
Alignment explanation
Indices: 6717726--6717756 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
6717716 CATAAAACTG
6717726 TTTAGATTTATTAA
1 TTTAGATTTATTAA
6717740 TTTATGATTTATTAA
1 TTTA-GATTTATTAA
6717755 TT
1 TT
6717757 AATTTGGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTAGATTTATTAA
Found at i:6724050 original size:45 final size:45
Alignment explanation
Indices: 6724000--6724092 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
6723990 GTGTACCTGT
* * *
6724000 GTTTTGGCATGCACTGGTTGCTTTGGATCAACACTAAATCTTGTG
1 GTTTTGGCATGCACTGATTGATTTGAATCAACACTAAATCTTGTG
6724045 GTTTTGGCATGCACTGATTGATTTGAATCAACACTAAATCTTGTG
1 GTTTTGGCATGCACTGATTGATTTGAATCAACACTAAATCTTGTG
6724090 GTT
1 GTT
6724093 ATGTTAGGAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (45 bp):
GTTTTGGCATGCACTGATTGATTTGAATCAACACTAAATCTTGTG
Found at i:6727427 original size:162 final size:161
Alignment explanation
Indices: 6727226--6727684 Score: 537
Period size: 162 Copynumber: 2.8 Consensus size: 161
6727216 TGACTGACAT
* *
6727226 TGGGAAGAGAAACTTTAAATTATAGCATTTTTGAACTTCTACTTCCCTTAAACTTTGGAGGCTTA
1 TGGGAAGAGATACTTTAAATTATTGCATTTTT-AACTTCTACTTCCCTTAAACTTTGGAGGCTTA
* * * *
6727291 TATTTGACACTTGTGGATCTTGGATTATGTCTTCCACTCGTGAGCAACTCTTTATCTTCAAAGTA
65 TATTTGACACTTGTGGATCTTGGATTATTTCTTCTAATCGAGAGCAACTCTTTATCTTCAAAGTA
* * *
6727356 TGCAATTGCCCAAG-GATTTTAGCAACAGACT-G
130 TGCAATTGCCCAAGAG-TATCAACAACAGA-TAG
* *
6727388 TGGGAAGAGGTACTTTAAATTATTGCATTTGTTAACTTCTACTTCCCTTAAACTTTGGAGGTTTA
1 TGGGAAGAGATACTTTAAATTATTGCATTT-TTAACTTCTACTTCCCTTAAACTTTGGAGGCTTA
* * * * *
6727453 TGTGTGACACTTGTGGGTCTTGGATTATTTCTTCTAATTGCGAGCAACTCTTTATCTTCAAAGTA
65 TATTTGACACTTGTGGATCTTGGATTATTTCTTCTAATCGAGAGCAACTCTTTATCTTCAAAGTA
* *
6727518 TGCAATTGTCCAAGAGTATCAACAACAGATAT
130 TGCAATTGCCCAAGAGTATCAACAACAGATAG
* ** * * * ** * *
6727550 TGGGAAGATATA-TTTCAAATTATTGCAGCCTATAACTTGTATTTCCCTTAGGCATTGGAAGCTT
1 TGGGAAGAGATACTTT-AAATTATTGCA-TTTTTAACTTCTACTTCCCTTAAACTTTGGAGGCTT
* * * * *
6727614 ATATTTGATACTTGTGGATCTTGAATTATTTCTTCTAATCCAGAGCACCTCTTTATCTTCAACGT
64 ATATTTGACACTTGTGGATCTTGGATTATTTCTTCTAATCGAGAGCAACTCTTTATCTTCAAAGT
*
6727679 TTGCAA
129 ATGCAA
6727685 CTTGGGTGCA
Statistics
Matches: 252, Mismatches: 40, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
161 4 0.02
162 244 0.97
163 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (161 bp):
TGGGAAGAGATACTTTAAATTATTGCATTTTTAACTTCTACTTCCCTTAAACTTTGGAGGCTTAT
ATTTGACACTTGTGGATCTTGGATTATTTCTTCTAATCGAGAGCAACTCTTTATCTTCAAAGTAT
GCAATTGCCCAAGAGTATCAACAACAGATAG
Found at i:6730740 original size:16 final size:16
Alignment explanation
Indices: 6730708--6730753 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
6730698 AAATGAAGAT
*
6730708 TTTAAAGAAACT-AAA
1 TTTAAAAAAACTGAAA
*
6730723 ATTAAATAAAACTGAAA
1 TTTAAA-AAAACTGAAA
6730740 TTTAAAAAAA-TGAA
1 TTTAAAAAAACTGAA
6730754 CAATAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 9 0.35
16 9 0.35
17 8 0.31
ACGTcount: A:0.63, C:0.04, G:0.07, T:0.26
Consensus pattern (16 bp):
TTTAAAAAAACTGAAA
Found at i:6731839 original size:30 final size:32
Alignment explanation
Indices: 6731803--6731871 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
6731793 GTTTCATTTC
** *
6731803 AGTCACTTAAC-TT-TCGAAAAGTTACAAAAT
1 AGTCACTTAACGTTATAAAAAAGTGACAAAAT
6731833 AGTCAC-TAACGTTATAAAAAAGTGACAAAAT
1 AGTCACTTAACGTTATAAAAAAGTGACAAAAT
6731864 AGTCACTT
1 AGTCACTT
6731872 TTTAACAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 4 0.12
30 8 0.24
31 20 0.61
32 1 0.03
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.28
Consensus pattern (32 bp):
AGTCACTTAACGTTATAAAAAAGTGACAAAAT
Found at i:6732422 original size:6 final size:6
Alignment explanation
Indices: 6732411--6732444 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6732401 TTTGGTTTAA
* *
6732411 ATTTTG ATTTTG ATTTTG ATTTCG ATTTAG ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTT
6732445 CAATTTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.03, G:0.15, T:0.62
Consensus pattern (6 bp):
ATTTTG
Found at i:6732426 original size:12 final size:12
Alignment explanation
Indices: 6732411--6732546 Score: 66
Period size: 12 Copynumber: 11.3 Consensus size: 12
6732401 TTTGGTTTAA
*
6732411 ATTTTGATTTTG
1 ATTTTGATTTCG
6732423 ATTTTGATTTCG
1 ATTTTGATTTCG
* *
6732435 ATTTAGATTTCA
1 ATTTTGATTTCG
**
6732447 ATTTTGA-AGC-
1 ATTTTGATTTCG
**
6732457 ACTCACTGA-TTCTG
1 A-T-TTTGATTTC-G
*
6732471 ATGTTGATGTT-G
1 ATTTTGAT-TTCG
*
6732483 ATTTTGATTTCA
1 ATTTTGATTTCG
** *
6732495 ATTTCAATTTCA
1 ATTTTGATTTCG
*
6732507 ATTTCT-ATTTAG
1 ATTT-TGATTTCG
*
6732519 ATTTTGATTTAG
1 ATTTTGATTTCG
6732531 ATTTTGATTTCG
1 ATTTTGATTTCG
6732543 ATTT
1 ATTT
6732547 ACGGTTATTT
Statistics
Matches: 95, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
10 1 0.01
11 5 0.05
12 85 0.89
13 1 0.01
14 3 0.03
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.54
Consensus pattern (12 bp):
ATTTTGATTTCG
Found at i:6732504 original size:18 final size:18
Alignment explanation
Indices: 6732482--6732546 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
6732472 TGTTGATGTT
6732482 GATTTTGATTTCAATTTCA
1 GATTTTGATTTCAATTT-A
** *
6732501 -ATTTCAATTTCTATTTA
1 GATTTTGATTTCAATTTA
*
6732518 GATTTTGATTT-AGATTTT
1 GATTTTGATTTCA-ATTTA
*
6732536 GATTTCGATTT
1 GATTTTGATTT
6732547 ACGGTTATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
17 1 0.03
18 35 0.97
ACGTcount: A:0.25, C:0.08, G:0.11, T:0.57
Consensus pattern (18 bp):
GATTTTGATTTCAATTTA
Found at i:6732872 original size:62 final size:60
Alignment explanation
Indices: 6732799--6732937 Score: 181
Period size: 62 Copynumber: 2.3 Consensus size: 60
6732789 GTACTGGTTA
6732799 TTGTATGTTATTGTCTACCATGTGCATGACAAAAATGGTCATGTTTGTATTAAATTATTT
1 TTGTATGTTATTGTCTACCATGTGCATGACAAAAATGGTCATGTTTGTATTAAATTATTT
* * * * **
6732859 TTGTACTGTTTATTTTCTGCTATGTGCATGACAGAAATGGTTGTGTTTGTATTAAATTATTT
1 TTGTA-TG-TTATTGTCTACCATGTGCATGACAAAAATGGTCATGTTTGTATTAAATTATTT
6732921 TT-TATTGGTTATTGTCT
1 TTGTA-T-GTTATTGTCT
6732938 GACAAAAATG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
60 5 0.07
61 13 0.19
62 50 0.74
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.50
Consensus pattern (60 bp):
TTGTATGTTATTGTCTACCATGTGCATGACAAAAATGGTCATGTTTGTATTAAATTATTT
Found at i:6733066 original size:15 final size:15
Alignment explanation
Indices: 6733042--6733071 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6733032 GAATAAGAAA
6733042 TGTCTAGTAGTGATG
1 TGTCTAGTAGTGATG
*
6733057 TGTCTGGTAGTGATG
1 TGTCTAGTAGTGATG
6733072 CATCTGAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.37, T:0.40
Consensus pattern (15 bp):
TGTCTAGTAGTGATG
Found at i:6733250 original size:28 final size:28
Alignment explanation
Indices: 6733210--6733265 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
6733200 CAGATAGCCA
6733210 AAATTGGCTTGAGTTCAACCTAGAGAAT
1 AAATTGGCTTGAGTTCAACCTAGAGAAT
6733238 AAATTGGCTTGAGTTCAACCTAGAGAAT
1 AAATTGGCTTGAGTTCAACCTAGAGAAT
6733266 GACATAGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (28 bp):
AAATTGGCTTGAGTTCAACCTAGAGAAT
Found at i:6735817 original size:25 final size:25
Alignment explanation
Indices: 6735789--6735838 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
6735779 GACTTAGAGG
*
6735789 AACTTCTCTTGTAAGACTCTTTATT
1 AACTTCTCTCGTAAGACTCTTTATT
6735814 AACTTCTCTCGTAAGACTCTTTATT
1 AACTTCTCTCGTAAGACTCTTTATT
6735839 TCGTTTATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.46
Consensus pattern (25 bp):
AACTTCTCTCGTAAGACTCTTTATT
Found at i:6740096 original size:130 final size:129
Alignment explanation
Indices: 6739844--6740154 Score: 317
Period size: 130 Copynumber: 2.4 Consensus size: 129
6739834 GAGATATTCG
* **
6739844 ATTATTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGTTCGATTCTCAAATCACCAAAC
1 ATTATTTTGAACAAA-GAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAAC
* * *
6739909 ATCAAACATCGCCTTCATTTTGAAAGATTTTAGAAAATGTGAGTGAAATTCCGAAGGAAT-CTTC
65 ATCAAACATCGCCTTCATTTTGAAAGATTTTAGAAAATATGAGTGAAATACCAAAGGAATAC-TC
6739973 A
129 A
* * *
6739974 ATTATTTTGAAACAACA-AAAAAGCGCAACCCAACACGATAGGGCACGATTCTCAAATCGCCGAA
1 ATTATTTTG-AACAA-AGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAA
** * * * * *
6740038 TGTTAAACATTGTCTTCGTTTT-AAAGGTTTTTA-ATAAATATGAGTGAAA-ACCTAAAGGAATA
64 CATCAAACATCGCCTTCATTTTGAAA-GATTTTAGA-AAATATGAGTGAAATACC-AAAGGAATA
*
6740100 CTCG
126 CTCA
* * * * *
6740104 ATTGTTTTGAACAAATGAGAAATCACAACCCAGCACGATAGGGCATGATTC
1 ATTATTTTGAACAAA-GAAAAAGCGCAACCCAGCACGATAGGGCACGATTC
6740155 CCGAATTGTC
Statistics
Matches: 150, Mismatches: 23, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
128 1 0.01
129 11 0.07
130 132 0.88
131 5 0.03
132 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (129 bp):
ATTATTTTGAACAAAGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCAAATCACCAAACA
TCAAACATCGCCTTCATTTTGAAAGATTTTAGAAAATATGAGTGAAATACCAAAGGAATACTCA
Found at i:6740254 original size:130 final size:130
Alignment explanation
Indices: 6740092--6740428 Score: 353
Period size: 130 Copynumber: 2.6 Consensus size: 130
6740082 TGAAAACCTA
* * * * ** * *
6740092 AAGGAATACTCGATTGTTTTGAA-CAAATGAGAAATCACAACCCAGCACGATAGGGCATGATTCC
1 AAGGGATATTCGATTATTTT-AAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCC
* * ** * *
6740156 -CGAATTGTCAAACACCGAGCAT-TAC-CTTTGTTTTAAAGGATTTT-AGGAGACCTGAGTGAAA
65 ACGAATTGCCAAACACC--GCATAT-CGCCTTCATTTAAAGGATTTTGA-AAGACATGAGTGAAA
6740217 TTTTG
126 TTTTG
* *
6740222 AAGGGATATTTGGTTATTTTAAGCAAACGAGAAATTGCAACCC-GACACGTTAGGGCACGATTCC
1 AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAG-CACGTTAGGGCACGATTCC
* * **
6740286 ACGAATTGCCAAATATCGCATATCGCCTTCATTTAGGGGATTTTGAAAGACATGAGTGAAATTTT
65 ACGAATTGCCAAACACCGCATATCGCCTTCATTTAAAGGATTTTGAAAGACATGAGTGAAATTTT
6740351 G
130 G
* * * * *
6740352 AAGTGATATTCGATTATTTTGAGCAAACGCGAAATTGTAACCCAACACGTTAGGGCACGATTCCA
1 AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCA
6740417 CGAATTGCCAAA
66 CGAATTGCCAAA
6740429 TATCAAATCT
Statistics
Matches: 173, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
129 8 0.05
130 151 0.87
131 14 0.08
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (130 bp):
AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCA
CGAATTGCCAAACACCGCATATCGCCTTCATTTAAAGGATTTTGAAAGACATGAGTGAAATTTTG
Found at i:6743122 original size:20 final size:21
Alignment explanation
Indices: 6743077--6743124 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
6743067 TTGGGATTTT
* *
6743077 GGGTTTAAGGTTTGATATTTA
1 GGGTTTAAGGATTGATATTCA
*
6743098 AGGTTTAA-GATTGATATTCA
1 GGGTTTAAGGATTGATATTCA
6743118 GGGTTTA
1 GGGTTTA
6743125 GTGTTTAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (21 bp):
GGGTTTAAGGATTGATATTCA
Found at i:6744623 original size:19 final size:19
Alignment explanation
Indices: 6744588--6744666 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
6744578 ATATTACAAG
6744588 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
6744609 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
6744628 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
6744645 ATCATATCTAAAATTGCAT
1 ATCATATCTAAGATTGCAT
6744664 ATC
1 ATC
6744667 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 16 0.29
19 30 0.55
20 1 0.02
21 8 0.15
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:6744652 original size:36 final size:39
Alignment explanation
Indices: 6744588--6744666 Score: 119
Period size: 36 Copynumber: 2.1 Consensus size: 39
6744578 ATATTACAAG
*
6744588 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAAATTGCAT
6744628 ATCATATC-T-AAGATTG-TATCATATCTAAAATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAAATTGCAT
6744664 ATC
1 ATC
6744667 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAAATTGCAT
Found at i:6747575 original size:24 final size:24
Alignment explanation
Indices: 6747543--6747590 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
6747533 ATAGAATGAA
*
6747543 TGAAATAATTGAGTGGTTATTCTT
1 TGAAATAATTGAGTGGCTATTCTT
6747567 TGAAATAATTGAGTGGCTATTCTT
1 TGAAATAATTGAGTGGCTATTCTT
6747591 ATAATTTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (24 bp):
TGAAATAATTGAGTGGCTATTCTT
Found at i:6749552 original size:129 final size:131
Alignment explanation
Indices: 6749395--6749629 Score: 314
Period size: 129 Copynumber: 1.8 Consensus size: 131
6749385 GCATTGAATT
* * ** *
6749395 TTTTTTAAAAAAGGATATTCAGTTGTTTGGTCAAATGGTAAATCAAAACCCAGCACG-TAGGGCA
1 TTTTTTAAAAAAGGATATTCAGTCGTTTGGTCAAACGAAAAATCAAAACCCAACACGTTAGGGCA
*
6749459 CGTTTTCTCAAAGTTTCC-AAACACAAAATATTGCCTTATTTTTTTTTAAGAAAACACAGATGAA
66 CGATTTCTCAAA-TTTCCAAAACACAAAATATTGCCTTATTTTTTTTTAAGAAAACACAGATGAA
6749523 AA
130 AA
* ** * *
6749525 TTTTTT-AAAAAGGGTATTTGGTCGTTTGGTCAAACGAAAAATCGAAACCTAACACGTTAGGGCA
1 TTTTTTAAAAAAGGATATTCAGTCGTTTGGTCAAACGAAAAATCAAAACCCAACACGTTAGGGCA
* * *
6749589 CGATTTCTCGAATTTCCAAAATACTAAATATTGCCTTATTT
66 CGATTTCTCAAATTTCCAAAACACAAAATATTGCCTTATTT
6749630 AGAAATTCTT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
129 45 0.51
130 44 0.49
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (131 bp):
TTTTTTAAAAAAGGATATTCAGTCGTTTGGTCAAACGAAAAATCAAAACCCAACACGTTAGGGCA
CGATTTCTCAAATTTCCAAAACACAAAATATTGCCTTATTTTTTTTTAAGAAAACACAGATGAAA
A
Found at i:6750822 original size:23 final size:21
Alignment explanation
Indices: 6750774--6750848 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 21
6750764 AATGTTAGAA
*
6750774 TAATAAAATA-AACATGAATA-
1 TAATAAAATATAATAT-AATAG
6750794 TAAATATAAATATAATACTAATAG
1 T-AATA-AAATATAATA-TAATAG
*
6750818 TAATAATATAATAATGATAATAG
1 TAATAAAAT-ATAAT-ATAATAG
6750841 TAATAAAA
1 TAATAAAA
6750849 AAACAATAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.02
21 4 0.09
22 8 0.18
23 29 0.64
24 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (21 bp):
TAATAAAATATAATATAATAG
Found at i:6750831 original size:3 final size:3
Alignment explanation
Indices: 6750805--6750868 Score: 60
Period size: 3 Copynumber: 22.0 Consensus size: 3
6750795 AAATATAAAT
* * * * *
6750805 ATA ATA CTA ATA GTA ATA AT- ATA ATA ATG ATA ATA GTA ATA A-A AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
6750851 ACA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
6750869 GTACGATAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
2 4 0.08
3 45 0.92
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:6750844 original size:20 final size:20
Alignment explanation
Indices: 6750802--6750865 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
6750792 TATAAATATA
* *
6750802 AATATAATACTAATAGTAAT
1 AATATAATAATAATAATAAT
* *
6750822 AATATAATAATGATAATAGT
1 AATATAATAATAATAATAAT
* * *
6750842 AATAAAAAAACAATAATAAT
1 AATATAATAATAATAATAAT
6750862 AATA
1 AATA
6750866 ATAGTACGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (20 bp):
AATATAATAATAATAATAAT
Found at i:6750860 original size:23 final size:23
Alignment explanation
Indices: 6750807--6750868 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
6750797 ATATAAATAT
* * * *
6750807 AATACTAATAGTAATAATATAAT
1 AATAATAATAGTAATAAAAAAAC
*
6750830 AATGATAATAGTAATAAAAAAAC
1 AATAATAATAGTAATAAAAAAAC
*
6750853 AATAATAATAATAATA
1 AATAATAATAGTAATA
6750869 GTACGATAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (23 bp):
AATAATAATAGTAATAAAAAAAC
Found at i:6751149 original size:3 final size:3
Alignment explanation
Indices: 6751141--6751325 Score: 56
Period size: 3 Copynumber: 59.3 Consensus size: 3
6751131 GCTTAATAGT
* * * * *
6751141 ATA ATA ATA ATA ATA ATA ATA ATT TTG GTA ATAA ATA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
* * **
6751187 ATA A-A ATAA AGA ATA ACA ATA ATA CATTA ATAA ATAA ATCA GGA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA -A-TA AT-A AT-A AT-A ATA ATA
* * * * *
6751234 ATG ATA ATA AAA ACA ATA AT- ATA TACA ATA AT- ATA A-A AGAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA A-TA ATA
* * * * *
6751278 ATA ACA GTG ATA CAGTA GTA AAA ATA ATA ATA ATA AT- ATCA ATA ATA
1 ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
6751325 A
1 A
6751326 ACATGCGTAT
Statistics
Matches: 132, Mismatches: 35, Indels: 30
0.67 0.18 0.15
Matches are distributed among these distances:
2 10 0.08
3 96 0.73
4 22 0.17
5 4 0.03
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:6752648 original size:9 final size:9
Alignment explanation
Indices: 6752634--6752662 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
6752624 CCTTAGCGTT
6752634 TTGGGCCTG
1 TTGGGCCTG
6752643 TTGGGCCTG
1 TTGGGCCTG
6752652 TTGGGCCTG
1 TTGGGCCTG
6752661 TT
1 TT
6752663 CTTGCGGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.41, T:0.38
Consensus pattern (9 bp):
TTGGGCCTG
Found at i:6755847 original size:12 final size:12
Alignment explanation
Indices: 6755830--6755864 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
6755820 ATTTTCAAAT
6755830 TATATTTTATTA
1 TATATTTTATTA
*
6755842 TATATTTTGTTA
1 TATATTTTATTA
*
6755854 TATATATTATT
1 TATATTTTATT
6755865 CCTTATATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:6755973 original size:29 final size:29
Alignment explanation
Indices: 6755939--6756052 Score: 86
Period size: 34 Copynumber: 3.6 Consensus size: 29
6755929 TTATTATTAA
*
6755939 ATAATAGTATATATATTATCTTTATTTAT
1 ATAATAGTATATATATTATATTTATTTAT
6755968 ATAATAGTATTCATATTTCATTATATTTATTTAT
1 ATAATAGTA-T-ATA--T-ATTATATTTATTTAT
* *
6756002 ATATATTGTATATCATATTTTATTTTATATT-T
1 ATA-ATAGTATAT-ATATTATA-TTTAT-TTAT
* *
6756034 TTACTATGTATATATATTA
1 ATAATA-GTATATATATTA
6756053 ATTATTCTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
29 9 0.13
30 1 0.01
31 14 0.21
32 15 0.22
33 5 0.07
34 19 0.28
35 5 0.07
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (29 bp):
ATAATAGTATATATATTATATTTATTTAT
Found at i:6755991 original size:34 final size:36
Alignment explanation
Indices: 6755953--6756021 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 36
6755943 TAGTATATAT
*
6755953 ATTATCTTTATTTATATA-ATAGTAT-TCATATTTC
1 ATTATATTTATTTATATATATAGTATATCATATTTC
*
6755987 ATTATATTTATTTATATATATTGTATATCATATTT
1 ATTATATTTATTTATATATATAGTATATCATATTT
6756022 TATTTTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 17 0.55
35 6 0.19
36 8 0.26
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (36 bp):
ATTATATTTATTTATATATATAGTATATCATATTTC
Found at i:6757590 original size:25 final size:25
Alignment explanation
Indices: 6757562--6757616 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
6757552 GGCTTCCCAA
*
6757562 ATAATATGCTACAAAGGCCTTT-TAG
1 ATAATATGCCAC-AAGGCCTTTATAG
* *
6757587 ATAATTTGCCACAAGGGCTTTATAG
1 ATAATATGCCACAAGGCCTTTATAG
6757612 ATAAT
1 ATAAT
6757617 TCACCACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (25 bp):
ATAATATGCCACAAGGCCTTTATAG
Found at i:6757623 original size:25 final size:24
Alignment explanation
Indices: 6757575--6757625 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
6757565 ATATGCTACA
**
6757575 AAGGCCTTTTAGATAATTTGCCAC
1 AAGGCCTTTTAGATAATTCACCAC
*
6757599 AAGGGCTTTATAGATAATTCACCAC
1 AAGGCCTTT-TAGATAATTCACCAC
6757624 AA
1 AA
6757626 AGGTTCGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (24 bp):
AAGGCCTTTTAGATAATTCACCAC
Found at i:6763228 original size:14 final size:13
Alignment explanation
Indices: 6763187--6763219 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
6763177 AATCATGAAT
6763187 CCCAAACTCAAAC
1 CCCAAACTCAAAC
6763200 CCCAAACTCAAAC
1 CCCAAACTCAAAC
*
6763213 CCTAAAC
1 CCCAAAC
6763220 CTTAAACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.45, G:0.00, T:0.09
Consensus pattern (13 bp):
CCCAAACTCAAAC
Found at i:6763306 original size:12 final size:13
Alignment explanation
Indices: 6763282--6763332 Score: 59
Period size: 12 Copynumber: 3.9 Consensus size: 13
6763272 GTTCAAGTTT
*
6763282 GGGTTCAAGGTTC
1 GGGTTCGAGGTTC
6763295 GGGTTC-AGGTTC
1 GGGTTCGAGGTTC
* *
6763307 AGGTTCGGGGTTC
1 GGGTTCGAGGTTC
6763320 GGGGTTCGAGGTT
1 -GGGTTCGAGGTT
6763333 TGAGATTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
12 11 0.34
13 11 0.34
14 10 0.31
ACGTcount: A:0.10, C:0.14, G:0.45, T:0.31
Consensus pattern (13 bp):
GGGTTCGAGGTTC
Found at i:6763311 original size:25 final size:27
Alignment explanation
Indices: 6763283--6763332 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
6763273 TTCAAGTTTG
6763283 GGTTCAAGGTTC-GGGTTC-AGGTTCA
1 GGTTCAAGGTTCGGGGTTCGAGGTTCA
**
6763308 GGTTCGGGGTTCGGGGTTCGAGGTT
1 GGTTCAAGGTTCGGGGTTCGAGGTT
6763333 TGAGATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 6 0.29
27 5 0.24
ACGTcount: A:0.10, C:0.14, G:0.44, T:0.32
Consensus pattern (27 bp):
GGTTCAAGGTTCGGGGTTCGAGGTTCA
Found at i:6768236 original size:54 final size:54
Alignment explanation
Indices: 6768145--6768352 Score: 301
Period size: 54 Copynumber: 3.8 Consensus size: 54
6768135 CATATGACCT
* *
6768145 AAGGCTCAACTCACTTCTCGCAATATGGGTTGATTTTTGAAAAATAAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAA
* * *
6768199 AAGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAAACAGAAATTAA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAA
* * *
6768253 AAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAATATAAATTGA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATAAAAATTAA
*
6768309 AAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
6768353 CAGGAATTGA
Statistics
Matches: 138, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
53 1 0.01
54 87 0.63
55 1 0.01
56 49 0.36
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAA
Found at i:6768336 original size:110 final size:109
Alignment explanation
Indices: 6768145--6768366 Score: 331
Period size: 110 Copynumber: 2.0 Consensus size: 109
6768135 CATATGACCT
* *
6768145 AAGGCTCAACTCACTTCTCGCAATATGGGTTGATTTTTGAAAAATAAAAATTAAAAGGTACAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAAAAGGTACAACT
*
6768210 CACCTCTCGCAATATGAGTTGCTTTTTGAAAAACAGAAATT-AA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
* * *
6768253 AAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAGGCT-CA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATAAAAATTAAAAGG-TACA
* *
6768317 ACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATTGAA
63 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
6768364 AAG
1 AAG
6768367 TAGAAATGAA
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
108 30 0.29
110 66 0.65
111 6 0.06
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (109 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTAAAAGGTACAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
Found at i:6784574 original size:14 final size:14
Alignment explanation
Indices: 6784549--6784582 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
6784539 AATCCTTAAA
6784549 ATATTTTTATATTT
1 ATATTTTTATATTT
6784563 A-ATTTTTAATATTT
1 ATATTTTT-ATATTT
6784577 ATATTT
1 ATATTT
6784583 ACTTTTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.33
14 8 0.44
15 4 0.22
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
ATATTTTTATATTT
Found at i:6787404 original size:22 final size:20
Alignment explanation
Indices: 6787361--6787416 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 20
6787351 TTAGCATATT
6787361 TAATA-TATTATTATTACTC
1 TAATATTATTATTATTACTC
*
6787380 TAACTTATTATTATTATT-TTGC
1 TAA--TATTATTATTATTACT-C
*
6787402 TAATATTACTATTAT
1 TAATATTATTATTAT
6787417 GATTATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
19 3 0.10
20 11 0.35
21 3 0.10
22 14 0.45
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATATTATTATTATTACTC
Found at i:6787448 original size:13 final size:13
Alignment explanation
Indices: 6787425--6787459 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
6787415 ATGATTATAT
6787425 TTCATTTTTGTGTA
1 TTCA-TTTTGTGTA
*
6787439 TTTATTTTGTGTA
1 TTCATTTTGTGTA
6787452 TTCATTTT
1 TTCATTTT
6787460 ATATTTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (13 bp):
TTCATTTTGTGTA
Found at i:6787526 original size:16 final size:15
Alignment explanation
Indices: 6787501--6787540 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
6787491 ATGTCCTTGG
*
6787501 TATTTTTATTTCTAT
1 TATTTTTATTACTAT
6787516 TATTATTTATTACTAT
1 TATT-TTTATTACTAT
6787532 TATTTTTAT
1 TATTTTTAT
6787541 CTTGATACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTATTACTAT
Found at i:6787990 original size:26 final size:26
Alignment explanation
Indices: 6787961--6788065 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
6787951 TGGTACAAAT
6787961 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6787987 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6788013 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6788039 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6788065 T
1 T
6788066 AATGGGCATT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6790097 original size:137 final size:137
Alignment explanation
Indices: 6789851--6790137 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
6789841 GAGTAGTCTC
6789851 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
6789916 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6789981 ACTGTTA
131 ACTGTTA
6789988 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
6790053 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
6790118 ACTGTTA
131 ACTGTTA
**
6790125 CCTGAATGGGCTT
1 CCCAAATGGGCTT
6790138 AGGCCCAATG
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:6792059 original size:48 final size:51
Alignment explanation
Indices: 6792007--6792124 Score: 197
Period size: 51 Copynumber: 2.4 Consensus size: 51
6791997 GCGCTTGATT
6792007 GTATTGT-AT-TA-GGTTTTACATATTATTGTTGTATATTATCTTCATTTC
1 GTATTGTCATATATGGTTTTACATATTATTGTTGTATATTATCTTCATTTC
*
6792055 GTATTGTCATATATTGTTTTACATATTATTGTTGTATATTATCTTCATTTC
1 GTATTGTCATATATGGTTTTACATATTATTGTTGTATATTATCTTCATTTC
6792106 GTATTGTCATATATTGGTT
1 GTATTGTCATATA-TGGTT
6792125 ATTCTTCACC
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
48 7 0.11
49 2 0.03
50 2 0.03
51 49 0.77
52 4 0.06
ACGTcount: A:0.23, C:0.08, G:0.13, T:0.56
Consensus pattern (51 bp):
GTATTGTCATATATGGTTTTACATATTATTGTTGTATATTATCTTCATTTC
Found at i:6792067 original size:26 final size:26
Alignment explanation
Indices: 6792038--6792120 Score: 98
Period size: 26 Copynumber: 3.2 Consensus size: 26
6792028 ATTATTGTTG
6792038 TATATTATCTTCATTTCGTATTGTCA
1 TATATTATCTTCATTTCGTATTGTCA
* * * **
6792064 TATATTGTTTTACATAT--TATTGTTG
1 TATATTATCTT-CATTTCGTATTGTCA
6792089 TATATTATCTTCATTTCGTATTGTCA
1 TATATTATCTTCATTTCGTATTGTCA
6792115 TATATT
1 TATATT
6792121 GGTTATTCTT
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
24 4 0.09
25 15 0.34
26 21 0.48
27 4 0.09
ACGTcount: A:0.24, C:0.11, G:0.08, T:0.57
Consensus pattern (26 bp):
TATATTATCTTCATTTCGTATTGTCA
Found at i:6792074 original size:51 final size:51
Alignment explanation
Indices: 6792019--6792121 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
6792009 ATTGTATTAG
6792019 GTTTTACATATTATTGTTGTATATTATCTTCATTTCGTATTGTCATATATT
1 GTTTTACATATTATTGTTGTATATTATCTTCATTTCGTATTGTCATATATT
6792070 GTTTTACATATTATTGTTGTATATTATCTTCATTTCGTATTGTCATATATT
1 GTTTTACATATTATTGTTGTATATTATCTTCATTTCGTATTGTCATATATT
6792121 G
1 G
6792122 GTTATTCTTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.23, C:0.10, G:0.11, T:0.56
Consensus pattern (51 bp):
GTTTTACATATTATTGTTGTATATTATCTTCATTTCGTATTGTCATATATT
Found at i:6795154 original size:25 final size:26
Alignment explanation
Indices: 6795107--6795161 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
6795097 TTTACCATAT
* *
6795107 AGGCTTTCCAAATAACTTCGCCACTA
1 AGGCTTCCCAAATAACTTCGCCACGA
6795133 AGGCTTCCCAAATAA-TAT-GCCACGA
1 AGGCTTCCCAAATAACT-TCGCCACGA
6795158 AGGC
1 AGGC
6795162 CTTTTAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (26 bp):
AGGCTTCCCAAATAACTTCGCCACGA
Found at i:6795189 original size:24 final size:26
Alignment explanation
Indices: 6795144--6795199 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
6795134 GGCTTCCCAA
*
6795144 ATAATATGCCACGAAGGCCTTT-TAG
1 ATAATTTGCCACGAAGGCCTTTATAG
*
6795169 ATAATTTGCCAC-AAGGGCTTTATAG
1 ATAATTTGCCACGAAGGCCTTTATAG
6795194 ATAATT
1 ATAATT
6795200 CACAACAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 8 0.29
25 20 0.71
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (26 bp):
ATAATTTGCCACGAAGGCCTTTATAG
Found at i:6795207 original size:25 final size:24
Alignment explanation
Indices: 6795157--6795207 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
6795147 ATATGCCACG
** *
6795157 AAGGCCTTTTAGATAATTTGCCAC
1 AAGGCCTTTTAGATAATTCACAAC
*
6795181 AAGGGCTTTATAGATAATTCACAAC
1 AAGGCCTTT-TAGATAATTCACAAC
6795206 AA
1 AA
6795208 AGGTTCGATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (24 bp):
AAGGCCTTTTAGATAATTCACAAC
Found at i:6798306 original size:29 final size:29
Alignment explanation
Indices: 6798241--6798306 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
6798231 AATGCATATA
*
6798241 ACTAAAATTGACAAATTTGAAAAGTATAGGG
1 ACTAAAATTGACAAATTT--AAAGTATAGAG
* *
6798272 AGTAAAATTGATCAAATTT-TAGTATAGAG
1 ACTAAAATTGA-CAAATTTAAAGTATAGAG
6798301 ACTAAA
1 ACTAAA
6798307 TTCACAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 13 0.43
31 10 0.33
32 7 0.23
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (29 bp):
ACTAAAATTGACAAATTTAAAGTATAGAG
Found at i:6798375 original size:4 final size:4
Alignment explanation
Indices: 6798358--6798411 Score: 99
Period size: 4 Copynumber: 13.5 Consensus size: 4
6798348 AACCAAATAT
*
6798358 ATAC ATAG ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
6798406 ATAC AT
1 ATAC AT
6798412 CATTCCCCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.50, C:0.22, G:0.02, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:6800863 original size:28 final size:26
Alignment explanation
Indices: 6800832--6800896 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 26
6800822 ATGTTAAATT
6800832 ATTTAATAAAATAAACGA-AAAAATTAA
1 ATTTAATAAAATAAA--ATAAAAATTAA
6800859 CATTTCAA-AAAATAAAATAAAAATTAA
1 -ATTT-AATAAAATAAAATAAAAATTAA
6800886 ATTATAATAAA
1 ATT-TAATAAA
6800897 GAGAATAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
26 6 0.18
27 13 0.39
28 12 0.36
29 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (26 bp):
ATTTAATAAAATAAAATAAAAATTAA
Found at i:6805086 original size:3 final size:3
Alignment explanation
Indices: 6805078--6805105 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6805068 CCAAAATCAA
6805078 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
6805106 GACCCTGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:6805798 original size:10 final size:10
Alignment explanation
Indices: 6805783--6805878 Score: 51
Period size: 10 Copynumber: 10.0 Consensus size: 10
6805773 ATTTTATATT
6805783 TAAAATTATA
1 TAAAATTATA
6805793 TAAAATT-T-
1 TAAAATTATA
*
6805801 TAAAAATATA
1 TAAAATTATA
* * *
6805811 TCAAAGTGTA
1 TAAAATTATA
*
6805821 AAAAATTATA
1 TAAAATTATA
6805831 -AAAA-TATA
1 TAAAATTATA
* *
6805839 GAAATTTAT-
1 TAAAATTATA
6805848 TATAAATTAT-
1 TA-AAATTATA
*
6805858 TATAAATGATA
1 TA-AAATTATA
*
6805869 AAAAATTATA
1 TAAAATTATA
6805879 AGAATAATTA
Statistics
Matches: 66, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
8 10 0.15
9 10 0.15
10 45 0.68
11 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (10 bp):
TAAAATTATA
Found at i:6807018 original size:22 final size:23
Alignment explanation
Indices: 6806993--6807053 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 23
6806983 AAAACATTGT
6806993 TGTTTTTGCTATTG-TTTTCTCA-
1 TGTTTTTGCTATTGTTTTTC-CAC
* *
6807015 TG-TTTTGTTGTTGTTTTTCCAC
1 TGTTTTTGCTATTGTTTTTCCAC
*
6807037 T-TTTTTTCTATTGTTTT
1 TGTTTTTGCTATTGTTTT
6807054 GTTGACATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 11 0.35
22 20 0.65
ACGTcount: A:0.07, C:0.11, G:0.13, T:0.69
Consensus pattern (23 bp):
TGTTTTTGCTATTGTTTTTCCAC
Found at i:6807029 original size:33 final size:33
Alignment explanation
Indices: 6806989--6807057 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
6806979 AAAAAAAACA
*
6806989 TTGTTGTTTTTGCTA-TTGTTTTCTCA-TGTTTTG
1 TTGTTGTTTTT-CCACTTGTTTTCT-ATTGTTTTG
*
6807022 TTGTTGTTTTTCCACTTTTTTTCTATTGTTTTG
1 TTGTTGTTTTTCCACTTGTTTTCTATTGTTTTG
6807055 TTG
1 TTG
6807058 ACATTCATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 3 0.09
33 29 0.91
ACGTcount: A:0.06, C:0.10, G:0.16, T:0.68
Consensus pattern (33 bp):
TTGTTGTTTTTCCACTTGTTTTCTATTGTTTTG
Found at i:6807053 original size:21 final size:22
Alignment explanation
Indices: 6806993--6807053 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 22
6806983 AAAACATTGT
*
6806993 TGTTTTTGCTATTGTTTTCTCA
1 TGTTTTTTCTATTGTTTTCTCA
* *
6807015 TGTTTTGT-TGTTGTTTT-TCCA
1 TGTTTTTTCTATTGTTTTCT-CA
6807036 CT-TTTTTTCTATTGTTTT
1 -TGTTTTTTCTATTGTTTT
6807054 GTTGACATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 1 0.03
21 15 0.48
22 15 0.48
ACGTcount: A:0.07, C:0.11, G:0.13, T:0.69
Consensus pattern (22 bp):
TGTTTTTTCTATTGTTTTCTCA
Found at i:6809284 original size:39 final size:39
Alignment explanation
Indices: 6809234--6809318 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
6809224 GCTCTGATAA
* *
6809234 GCTTCAATTAGCATTCAGG-CTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCATTC-GGCCTTCCGTTTAGCACTTATGT
*
6809273 GCTTCAGTTAGCCTTCGGCCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCATTCGGCCTTCCGTTTAGCACTTATGT
6809312 GCTTCAG
1 GCTTCAG
6809319 CTAGACTTCG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
38 2 0.05
39 40 0.95
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCATTCGGCCTTCCGTTTAGCACTTATGT
Found at i:6809328 original size:39 final size:39
Alignment explanation
Indices: 6809253--6809334 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
6809243 AGCATTCAGG
* * *
6809253 CTTCCGTTTAGCACTTGTGTGCTTCAGTTAGCCTTCGGC
1 CTTCCGTTTAGCACTTATGTGCTTCAGCTAGACTTCGGC
*
6809292 CTTCCGTTTAGCACTTATGTGCTTCAGCTAGACTTCGGG
1 CTTCCGTTTAGCACTTATGTGCTTCAGCTAGACTTCGGC
6809331 CTTC
1 CTTC
6809335 AGATCACGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.12, C:0.28, G:0.22, T:0.38
Consensus pattern (39 bp):
CTTCCGTTTAGCACTTATGTGCTTCAGCTAGACTTCGGC
Found at i:6811298 original size:3 final size:3
Alignment explanation
Indices: 6811281--6811597 Score: 148
Period size: 3 Copynumber: 103.7 Consensus size: 3
6811271 TACTGACGAG
* * * * *
6811281 TAA TAA TGA TGA TAA TAA -AA GTAA TAA TAT TGA TAA TAGA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TA-A TAA TAA
* * * *
6811327 TAA -AA GGAA -CA TAA ATAA TAG TAA TAA TAA TAA TAA CAA TAA T-A
1 TAA TAA -TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
6811371 TAAA TAA TAA TATA TGTA TGA TAA TAG TGA TAA -AA TAA GTTAA TAA
1 T-AA TAA TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA --TAA TAA
* * * * *
6811417 TAA TTA TAA TAA TGACC TAA TAA TAA AAA T-A TAA CAG TAA TAA TAA
1 TAA TAA TAA TAA T-A-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
6811463 TAG TGAA T-A TAA CT-A TAG TAA TAT TAA TAA TAA AAA TAA TAG CAA
1 TAA T-AA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
6811508 TAA AAA TAA AAA TAA TAA CAA TGA CAA TAAA GAA TAA TATA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TAA TAA
* *
6811555 TAA TAA TAA TAA TAA TAA T-A TAA TAA GAA TAA TAA TAA GAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
6811598 TTAAAAGTAA
Statistics
Matches: 231, Mismatches: 59, Indels: 48
0.68 0.17 0.14
Matches are distributed among these distances:
2 16 0.07
3 186 0.81
4 25 0.11
5 4 0.02
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:6818421 original size:112 final size:113
Alignment explanation
Indices: 6818292--6818518 Score: 411
Period size: 112 Copynumber: 2.0 Consensus size: 113
6818282 AACATTTTAT
6818292 AATTTAGTCCTTTCTTTGCCCATTTAATCACATTAACAATAATCACAATCATTTATCACTCTCTT
1 AATTTAGTCCTTTCTTTGCCCATTTAATCACATTAACAATAATCACAATCATTTATCACTCTCTT
6818357 GAATTCTTCACATTTATTAACATGTTCATTAATTTATTATTTT-AAAA
66 GAATTCTTCACATTTATTAACATGTTCATTAATTTATTATTTTCAAAA
* *
6818404 AATTTAGTCCTTTCTTTGCCCATTTAATCACATTAATAATAATCACAATCATTTATCACTTTCTT
1 AATTTAGTCCTTTCTTTGCCCATTTAATCACATTAACAATAATCACAATCATTTATCACTCTCTT
* *
6818469 GAATTTTTCACATTTTTTAACATGTTCATTAATTTATTATTTTCAAAA
66 GAATTCTTCACATTTATTAACATGTTCATTAATTTATTATTTTCAAAA
6818517 AA
1 AA
6818519 ATCTAATTAG
Statistics
Matches: 110, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
112 104 0.95
113 6 0.05
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.46
Consensus pattern (113 bp):
AATTTAGTCCTTTCTTTGCCCATTTAATCACATTAACAATAATCACAATCATTTATCACTCTCTT
GAATTCTTCACATTTATTAACATGTTCATTAATTTATTATTTTCAAAA
Found at i:6818831 original size:5 final size:5
Alignment explanation
Indices: 6818821--6818845 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6818811 ACTAATATTT
6818821 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
6818846 TTCAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:6822905 original size:10 final size:11
Alignment explanation
Indices: 6822861--6822914 Score: 51
Period size: 10 Copynumber: 4.9 Consensus size: 11
6822851 CCTTTTTAAC
6822861 TTTTATTTC-A
1 TTTTATTTCTA
6822871 TTATTATTTCT-
1 TT-TTATTTCTA
*
6822882 TATTATTTCCTA
1 TTTTATTT-CTA
6822894 TTTTATTT-TA
1 TTTTATTTCTA
6822904 TTTTACTTTCT
1 TTTTA-TTTCT
6822915 CATGAGGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
10 15 0.42
11 13 0.36
12 8 0.22
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATTTCTA
Found at i:6825449 original size:10 final size:10
Alignment explanation
Indices: 6825430--6825465 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
6825420 AGAGAAAAGT
6825430 TTTAATTTGA
1 TTTAATTTGA
*
6825440 TTTGATTTGA
1 TTTAATTTGA
*
6825450 TTTAATTTAA
1 TTTAATTTGA
6825460 TTTAAT
1 TTTAAT
6825466 AAGATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (10 bp):
TTTAATTTGA
Found at i:6828415 original size:18 final size:17
Alignment explanation
Indices: 6828389--6828489 Score: 69
Period size: 18 Copynumber: 5.5 Consensus size: 17
6828379 TAAGTTATAG
*
6828389 AAAAGTATTAAAATTACA
1 AAAATTATTAAAATTA-A
6828407 AAAATTATTAAAAATTAA
1 AAAATTATT-AAAATTAA
*
6828425 TAAAA-TATTATAAAATAA
1 -AAAATTATTA-AAATTAA
*
6828443 AAAAGTTCTTAAAATTTTAA
1 AAAA-TTATTAAAA--TTAA
* *
6828463 TAAAAATATTAAAAGTTAT
1 -AAAATTATTAAAA-TTAA
6828482 AAAATTAT
1 AAAATTAT
6828490 AGAACTCTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
17 5 0.08
18 29 0.44
19 18 0.27
20 10 0.15
21 4 0.06
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (17 bp):
AAAATTATTAAAATTAA
Found at i:6828441 original size:10 final size:9
Alignment explanation
Indices: 6828383--6828439 Score: 51
Period size: 10 Copynumber: 5.9 Consensus size: 9
6828373 GCAAAATAAG
6828383 TTATAGAAAA
1 TTATA-AAAA
* *
6828393 GTATTAAAA
1 TTATAAAAA
*
6828402 TTACAAAAA
1 TTATAAAAA
6828411 TTATTAAAAA
1 TTA-TAAAAA
6828421 TTAATAAAATA
1 TT-ATAAAA-A
6828432 TTATAAAA
1 TTATAAAA
6828440 TAAAAAAGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 13 0.34
10 21 0.55
11 4 0.11
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:6828476 original size:37 final size:37
Alignment explanation
Indices: 6828389--6828489 Score: 100
Period size: 39 Copynumber: 2.7 Consensus size: 37
6828379 TAAGTTATAG
*
6828389 AAAAGTATTAAAATTACAAAAATTATTAAAAATTAAT
1 AAAAATATTAAAATTACAAAAATTATTAAAAATTAAT
* * *
6828426 -AAAATATTATAAAATA-AAAAAGTTCTTAAAATTTTAAT
1 AAAAATATTA-AAATTACAAAAA-TTATTAAAA-ATTAAT
*
6828464 AAAAATATTAAAAGTTA-TAAAATTAT
1 AAAAATATTAAAA-TTACAAAAATTAT
6828490 AGAACTCTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
36 13 0.25
37 13 0.25
38 11 0.21
39 15 0.29
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (37 bp):
AAAAATATTAAAATTACAAAAATTATTAAAAATTAAT
Found at i:6832348 original size:3 final size:3
Alignment explanation
Indices: 6832284--6832322 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
6832274 AATGAAAATG
6832284 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6832323 TAACGTAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6832558 original size:18 final size:18
Alignment explanation
Indices: 6832535--6832595 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 18
6832525 TATACATAAA
6832535 AATATAATAAATATATAT
1 AATATAATAAATATATAT
*
6832553 AATATAATATATACATAATAT
1 AATATAATA-A-ATAT-ATAT
*
6832574 AGTATTAA-AAATATATAT
1 AATA-TAATAAATATATAT
6832592 AATA
1 AATA
6832596 CATACACATT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 16 0.46
19 4 0.11
20 4 0.11
21 8 0.23
22 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
AATATAATAAATATATAT
Found at i:6832562 original size:37 final size:39
Alignment explanation
Indices: 6832521--6832595 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
6832511 TGATATTAAA
6832521 AATATATACATAA-A-AATA-TAATAAATATATATAATAT
1 AATATATACATAATATAATATTAA-AAATATATATAATAT
*
6832558 AATATATACATAATATAGTATTAAAAATATATATAATA
1 AATATATACATAATATAATATTAAAAATATATATAATA
6832596 CATACACATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
37 13 0.38
38 1 0.03
39 17 0.50
40 3 0.09
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (39 bp):
AATATATACATAATATAATATTAAAAATATATATAATAT
Found at i:6832572 original size:25 final size:24
Alignment explanation
Indices: 6832517--6832590 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 24
6832507 AATGTGATAT
* *
6832517 TAAAAATATATACATAAAAATATAA
1 TAAATATATATA-ATAAATATATAA
6832542 TAAATATATATAATATAATATATACA
1 TAAATATATATAATA-AATATATA-A
6832568 T-AATATAGTATTAA-AAATATATA
1 TAAATATA-TA-TAATAAATATATA
6832591 TAATACATAC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
24 3 0.07
25 32 0.74
26 5 0.12
27 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (24 bp):
TAAATATATATAATAAATATATAA
Found at i:6832594 original size:23 final size:23
Alignment explanation
Indices: 6832521--6832595 Score: 75
Period size: 23 Copynumber: 3.2 Consensus size: 23
6832511 TGATATTAAA
*
6832521 AATATATACATAAAAATATA-AT
1 AATATATATATAAAAATATATAT
6832543 AA-ATATATATAATATAATATATACAT
1 AATATATATATAA-A-AATATAT--AT
6832569 AATATAGTAT-TAAAAATATATAT
1 AATATA-TATATAAAAATATATAT
6832592 AATA
1 AATA
6832596 CATACACATT
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
21 9 0.20
22 3 0.07
23 12 0.27
25 7 0.16
26 5 0.11
27 6 0.13
28 3 0.07
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (23 bp):
AATATATATATAAAAATATATAT
Found at i:6832812 original size:24 final size:24
Alignment explanation
Indices: 6832785--6832852 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
6832775 TAGTAATTAT
* * *
6832785 AATACTAATACTAATAATAAATAC
1 AATAATAATACTAAAAATAAACAC
* *
6832809 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATACTAAAAATAAACAC
6832833 AATAATAAT-CATAAAAATAA
1 AATAATAATAC-TAAAAATAA
6832853 TATAAATAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.25
Consensus pattern (24 bp):
AATAATAATACTAAAAATAAACAC
Found at i:6834457 original size:44 final size:44
Alignment explanation
Indices: 6834384--6834830 Score: 659
Period size: 44 Copynumber: 10.2 Consensus size: 44
6834374 AGGAACACCG
* * *
6834384 ATCTGTTATTTTCGATTTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
6834428 ATCTATTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
6834472 ATCTGTTATCTTCGATCTGCTCTTCGCTGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * * *
6834516 ATCTGTTATCTTCGATCTGTTCTCCACCGTTACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
6834560 ATC----ATATTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
6834600 ATCTGTTATCTTCGATCTGCTCTCCGCTGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
6834644 ATCTGTTATATTCGATCTGCTCTCCGCTGCTATAGAGACGTCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
6834688 ATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
6834732 ATTTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
6834776 ATCTGTTATCTTCAATCTGTTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
6834820 ATCTGTTATCT
1 ATCTGTTATCT
6834831 GTTTCAAGGA
Statistics
Matches: 360, Mismatches: 39, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
40 34 0.09
44 326 0.91
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:6834691 original size:172 final size:173
Alignment explanation
Indices: 6834394--6834828 Score: 683
Period size: 172 Copynumber: 2.5 Consensus size: 173
6834384 ATCTGTTATT
* *
6834394 TTCGATTTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCCGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* *
6834459 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCGCTGCTACAGAGACGCCAAATCTGTTA
66 ACAGAGACGCCAAATCTGTTATATTCGATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTA
* * *
6834524 TCTTCGATCTGTTCTCCACCGTTACAAAGATGCCAAA-TCATA
131 TCTTCGATCTGCTCTCCACCGCTACAAAGACGCCAAATTCATA
* *
6834566 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCTGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* *
6834631 ACAGAGACGCCAAATCTGTTATATTCGATCTGCTCTCCGCTGCTATAGAGACGTCAAATCTGTTA
66 ACAGAGACGCCAAATCTGTTATATTCGATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTA
* * *
6834696 TCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATTTGTTATC
131 TCTTCGATCTGCTCTCCACCGCTACAAAGACGCCAAA--T-TCATA
* * *
6834742 TTCGATCTGCTCTCTGCCGCTACAGAGATGCCAAATCTGTTATCTTCAATCTGTTCTCCGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
6834807 ACAGAGACGCCAAATCTGTTAT
66 ACAGAGACGCCAAATCTGTTAT
6834829 CTGTTTCAAG
Statistics
Matches: 240, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
172 155 0.65
176 85 0.35
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (173 bp):
TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
ACAGAGACGCCAAATCTGTTATATTCGATCTGCTCTCCGCTGCTACAGAGACGCCAAATCTGTTA
TCTTCGATCTGCTCTCCACCGCTACAAAGACGCCAAATTCATA
Found at i:6844422 original size:23 final size:23
Alignment explanation
Indices: 6844396--6844448 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
6844386 ACAATTTATT
*
6844396 AATATTTT-ATAATTTAAAATATA
1 AATATTTTAATAATAT-AAATATA
*
6844419 AATATTTTAATAATATAAATATG
1 AATATTTTAATAATATAAATATA
6844442 AATATTT
1 AATATTT
6844449 ATTTAAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
AATATTTTAATAATATAAATATA
Found at i:6844433 original size:17 final size:16
Alignment explanation
Indices: 6844408--6844440 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
6844398 TATTTTATAA
6844408 TTTAAAATATAAATAT
1 TTTAAAATATAAATAT
6844424 TTTAATAATATAAATAT
1 TTTAA-AATATAAATAT
6844441 GAATATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAATATAAATAT
Found at i:6847566 original size:23 final size:25
Alignment explanation
Indices: 6847540--6847595 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
6847530 TTATTTTTTT
*
6847540 ATATAAAAA-AAATTAAAAATA-TA
1 ATATAAAAATAAACTAAAAATATTA
*
6847563 ATATACAAAATATACTAAAAATATTA
1 ATATA-AAAATAAACTAAAAATATTA
*
6847589 AAATAAA
1 ATATAAA
6847596 TGTTTCCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 5 0.19
24 4 0.15
25 12 0.44
26 6 0.22
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.27
Consensus pattern (25 bp):
ATATAAAAATAAACTAAAAATATTA
Found at i:6848852 original size:20 final size:21
Alignment explanation
Indices: 6848829--6848869 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
6848819 TAATAAAAAG
6848829 TTACAAT-TATTAAT-ATTTTT
1 TTACAATGT-TTAATCATTTTT
6848849 TTACAATGTTTAATCATTTTT
1 TTACAATGTTTAATCATTTTT
6848870 AGAATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (21 bp):
TTACAATGTTTAATCATTTTT
Found at i:6849896 original size:25 final size:25
Alignment explanation
Indices: 6849862--6849913 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
6849852 ATAAATAACT
* *
6849862 AAAATATAAGTGATTGAAGTCGGCA
1 AAAATATAAGTAACTGAAGTCGGCA
*
6849887 AAAATGTAAGTAACTGAAGTCGGCA
1 AAAATATAAGTAACTGAAGTCGGCA
6849912 AA
1 AA
6849914 GCTTTACATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (25 bp):
AAAATATAAGTAACTGAAGTCGGCA
Found at i:6856361 original size:63 final size:61
Alignment explanation
Indices: 6855977--6857220 Score: 452
Period size: 63 Copynumber: 19.8 Consensus size: 61
6855967 TGGTTGTACG
* * ** ** * * *
6855977 ACAGGGCCATGATGCTTGGGTGAGTATGCTAATCCAAGAGATGATGCTTTGGGTGGTTTTGGA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCT-GGCCCTGAGATGATGCTTT-GGAGGTTCTGCA
* ** * * * * ** *
6856040 ACATGATCATTGA-GCTTGGAAGAGTGAGCTGGCACTGGGGATGGGGCTTTGGCAGGCTCTGCA
1 ACAGGGCCA-TGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTTTGG-AGGTTCTGCA
* * * * * *
6856103 ACAGGGTCATGATGCTCGGGAGAGTATGCTGGCTCTGCAGATAATGCTTTGGGAGGTTCTTCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCTG-AGATGATGCTTT-GGAGGTTCTGCA
*** ** * * *
6856166 AC-GGAAATATGATGCTCAGGACAGTGTGCTGGTCCTAGAGATGATGCTTTAAGAGGTTCTAG-A
1 ACAGG-GCCATGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTTT-GGAGGTTCT-GCA
* * * * * * * ** * * *
6856229 AGAGGTCCATCG-TGCTTGAGAGAAT-T-TTGTCTCTG-GAATTGATATTTCTGG-TGTTTTACA
1 ACAGGGCCAT-GATGCTTGGGAGAGTGTGCTGGCCCTGAG-A-TGATGCTT-TGGAGGTTCTGCA
* * * *
6856289 ACAGAGCCATGATGCTTGGGTGAGTGTGCTGGCCCCTGAGATGAGGCTTTGGCTGGTTCTGCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGG-CCCTGAGATGATGCTTTGG-AGGTTCTGCA
* * * * *
6856352 ACAGGGCCATGATGCTCGGGAGAGTGGGCTGGCCCAAGAGATGATACTTTCAGAGGTTCTAG-A
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCC-TGAGATGATGCTTT-GGAGGTTCT-GCA
* * * ** * * * * *
6856415 ACAGGTCCAT-AGTGCTTGGGAGAATTTTTTGTCTCT-AGATTCGATGTTTCTGG-GGCCTCTAC
1 ACAGGGCCATGA-TGCTTGGGAGAGTGTGCTGGCCCTGAGA-T-GATGCTT-TGGAGG-TTCTGC
6856477 A
61 A
* * * * * *
6856478 A-TGGAGCCATGATACTTGGGTGAGTGTGCTGGCCATGGAGATGAGGCTTTGGCTGGTTCTGCA
1 ACAGG-GCCATGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTTTGG-AGGTTCTGCA
* * * * * *
6856541 ACAGGGCCATGGTGCTTGGGAGAGGGGGCTGGCTCTGGTGATGAGGCTTTGGGAGGTTCTGCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTTT-GGAGGTTCTGCA
* * * * * * * * * * * **
6856604 ATAGTGCCATGATGATCGGGAGACTGTGCTTGCTCTGGACATGAGGCTTCGGGGGGTTCCACA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTT-TGGAGGTTCTGCA
* * * * * *
6856667 ACAGGGCTATGATGTTTGGGTGAGTATGCTGGCCCCGGAGATGATGCTTTGAGAGATTCTAG-A
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGG-CCCTGAGATGATGCTTTG-GAGGTTCT-GCA
* * * * * * * *
6856730 ACGGGGCCATGATGCTTGAGAGAGTGTTCTGGCTCT-AGAATTGATGTTTTGAGGGAGTTCAGAA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCTGAG-A-TGATGCTTTG-GAG-GTTCTGCA
* * * * * *
6856794 ACAGGGCCATGATGCTTGGGTGAGTATGCTGGTCCTGGAGATGATGCTTCAGGAGTTTCTCCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTT-TGGAGGTTCTGCA
** * * * * * * *
6856857 ACAGGGTGATCATTCTTGGGAGAGTGTGCAGGCACCAGAGATGAGGCTTTAGGTGATTCTGCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGC-CCTGAGATGATGCTTT-GGAGGTTCTGCA
* * * * * * * * ** *
6856920 ACATGGCTATGATGTTTGAGTGAGTATGCTGGCCCCGGAGATGATGCCTTGAGATATTCTGGA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGG-CCCTGAGATGATGCTTTG-GAGGTTCTGCA
* * * * * * ***
6856983 ACAGGGCCGTGATGATTGAGAGAGTGTTCTGGCTCT-AGAATTGATG-TTTCAGGGGGTTCAAAA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCTGAG-A-TGATGCTTT--GGAGGTTCTGCA
* * * * * * * *
6857046 ACAGGGCCATGATGCCTGGGTGAGTATGCTGGTCCCGGAGATGATACTTCAGGAGTTTCTCCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGG-CCCTGAGATGATGCTT-TGGAGGTTCTGCA
** * * * * * * *
6857109 ACAGGGTGATGATTCTTGGGAGAGTGTGCGGGCACCAGAGATGAGGCTTCAGGTGATTCTGCA
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGC-CCTGAGATGATGCTT-TGGAGGTTCTGCA
* * * *
6857172 ACATGGCTATGATGCTCGGGAGAGTGCGCTGGCCCTGGAGATGATGCTT
1 ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCT-GAGATGATGCTT
6857221 CATGATTCTT
Statistics
Matches: 846, Mismatches: 271, Indels: 128
0.68 0.22 0.10
Matches are distributed among these distances:
59 2 0.00
60 24 0.03
61 22 0.03
62 43 0.05
63 672 0.79
64 74 0.09
65 7 0.01
66 2 0.00
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (61 bp):
ACAGGGCCATGATGCTTGGGAGAGTGTGCTGGCCCTGAGATGATGCTTTGGAGGTTCTGCA
Found at i:6856539 original size:189 final size:186
Alignment explanation
Indices: 6856174--6856573 Score: 543
Period size: 189 Copynumber: 2.1 Consensus size: 186
6856164 CAACGGAAAT
* * * * * * *
6856174 ATGATGCTCAGGACAGTGTGCTGGTCCTAGAGATGATGCTTTAAGAGGTTCTAGAAGAGGTCCAT
1 ATGATGCTCGGGAGAGTGGGCTGGCCCAAGAGATGATACTTTAAGAGGTTCTAGAACAGGTCCAT
* * * * * *
6856239 CGTGCTTGAGAGAATTTTGTCTCTGGAATTGATATTTCTGGTGTTTTACAACAGAGCCATGATGC
66 AGTGCTTGAGAGAATTTTGTCTCTAGAATTGATATTTCTGGGGCTCTACAACAGAGCCATGATAC
*
6856304 TTGGGTGAGTGTGCTGGCCCCTGAGATGAGGCTTTGGCTGGTTCTGCAACAGGGCC
131 TTGGGTGAGTGTGCTGGCCCATGAGATGAGGCTTTGGCTGGTTCTGCAACAGGGCC
*
6856360 ATGATGCTCGGGAGAGTGGGCTGGCCCAAGAGATGATACTTTCAGAGGTTCTAGAACAGGTCCAT
1 ATGATGCTCGGGAGAGTGGGCTGGCCCAAGAGATGATACTTTAAGAGGTTCTAGAACAGGTCCAT
* * **
6856425 AGTGCTTGGGAGAATTTTTTGTCTCTAG-ATTCGATGTTTCTGGGGCCTCTACAATGGAGCCATG
66 AGTGCTTGAGAGAA--TTTTGTCTCTAGAATT-GATATTTCTGGGG-CTCTACAACAGAGCCATG
6856489 ATACTTGGGTGAGTGTGCTGG-CCATGGAGATGAGGCTTTGGCTGGTTCTGCAACAGGGCC
127 ATACTTGGGTGAGTGTGCTGGCCCAT-GAGATGAGGCTTTGGCTGGTTCTGCAACAGGGCC
* * *
6856549 ATGGTGCTTGGGAGAGGGGGCTGGC
1 ATGATGCTCGGGAGAGTGGGCTGGC
6856574 TCTGGTGATG
Statistics
Matches: 187, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
186 69 0.37
187 3 0.02
188 25 0.13
189 90 0.48
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (186 bp):
ATGATGCTCGGGAGAGTGGGCTGGCCCAAGAGATGATACTTTAAGAGGTTCTAGAACAGGTCCAT
AGTGCTTGAGAGAATTTTGTCTCTAGAATTGATATTTCTGGGGCTCTACAACAGAGCCATGATAC
TTGGGTGAGTGTGCTGGCCCATGAGATGAGGCTTTGGCTGGTTCTGCAACAGGGCC
Found at i:6857132 original size:252 final size:253
Alignment explanation
Indices: 6856665--6857218 Score: 894
Period size: 252 Copynumber: 2.2 Consensus size: 253
6856655 GGGGGTTCCA
* *
6856665 CAACAGGGCTATGATGTTTGGGTGAGTATGCTGGCCCCGGAGATGATGCTTTGAGAGATTCTAGA
1 CAACATGGCTATGATGTTTGGGTGAGTATGCTGGCCCCGGAGATGATGCCTTGAGAGATTCTAGA
* * * *
6856730 ACGGGGCCATGATGCTTGAGAGAGTGTTCTGGCTCTAGAATTGATGTTTTGAGGGAGTTCAGAAA
66 ACAGGGCCATGATGATTGAGAGAGTGTTCTGGCTCTAGAATTGATGTTTTCAGGGAGTTCAAAAA
* * *
6856795 CAGGGCCATGATGCTTGGGTGAGTATGCTGGTCCTGGAGATGATGCTTCAGGAGTTTCTCCAACA
131 CAGGGCCATGATGCCTGGGTGAGTATGCTGGTCCCGGAGATGATACTTCAGGAGTTTCTCCAACA
*
6856860 GGGTGATCATTCTTGGGAGAGTGTGCAGGCACCAGAGATGAGGCTTTAGGTGATTCTG
196 GGGTGATCATTCTTGGGAGAGTGTGCAGGCACCAGAGATGAGGCTTCAGGTGATTCTG
* * *
6856918 CAACATGGCTATGATGTTTGAGTGAGTATGCTGGCCCCGGAGATGATGCCTTGAGATATTCTGGA
1 CAACATGGCTATGATGTTTGGGTGAGTATGCTGGCCCCGGAGATGATGCCTTGAGAGATTCTAGA
* *
6856983 ACAGGGCCGTGATGATTGAGAGAGTGTTCTGGCTCTAGAATTGATG-TTTCAGGGGGTTCAAAAA
66 ACAGGGCCATGATGATTGAGAGAGTGTTCTGGCTCTAGAATTGATGTTTTCAGGGAGTTCAAAAA
6857047 CAGGGCCATGATGCCTGGGTGAGTATGCTGGTCCCGGAGATGATACTTCAGGAGTTTCTCCAACA
131 CAGGGCCATGATGCCTGGGTGAGTATGCTGGTCCCGGAGATGATACTTCAGGAGTTTCTCCAACA
* *
6857112 GGGTGATGATTCTTGGGAGAGTGTGCGGGCACCAGAGATGAGGCTTCAGGTGATTCTG
196 GGGTGATCATTCTTGGGAGAGTGTGCAGGCACCAGAGATGAGGCTTCAGGTGATTCTG
* * * ** *
6857170 CAACATGGCTATGATGCTCGGGAGAGTGCGCTGGCCCTGGAGATGATGC
1 CAACATGGCTATGATGTTTGGGTGAGTATGCTGGCCCCGGAGATGATGC
6857219 TTCATGATTC
Statistics
Matches: 277, Mismatches: 24, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
252 174 0.63
253 103 0.37
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (253 bp):
CAACATGGCTATGATGTTTGGGTGAGTATGCTGGCCCCGGAGATGATGCCTTGAGAGATTCTAGA
ACAGGGCCATGATGATTGAGAGAGTGTTCTGGCTCTAGAATTGATGTTTTCAGGGAGTTCAAAAA
CAGGGCCATGATGCCTGGGTGAGTATGCTGGTCCCGGAGATGATACTTCAGGAGTTTCTCCAACA
GGGTGATCATTCTTGGGAGAGTGTGCAGGCACCAGAGATGAGGCTTCAGGTGATTCTG
Found at i:6857322 original size:105 final size:105
Alignment explanation
Indices: 6857117--6857323 Score: 281
Period size: 105 Copynumber: 2.0 Consensus size: 105
6857107 CAACAGGGTG
** * * * *
6857117 ATGATTCTTGGGAGAGTGTGCGGGCACCAGAGATGAGGCTTCAGGTGATTCTGCAACATGGCTAT
1 ATGATTCTTGGGAGAGTGCACAGGCACCAGAGATAAGGCTTCAGGTGATTCTGCAACATGGCCAG
* *
6857182 GATGCTCGGGAGAGTGCGCTGGCCCTGGAGATGATGCTTC
66 GATGCTCGGGAGAGTGCGCTAGCCCGGGAGATGATGCTTC
* * *
6857222 ATGATTCTTGGGAGAGTGCACAGGCACCAGAGATAAGGCTTTAGGTGGTTCTGCAATATGGCCAG
1 ATGATTCTTGGGAGAGTGCACAGGCACCAGAGATAAGGCTTCAGGTGATTCTGCAACATGGCCAG
* *
6857287 GATGCTCGGGAGAGTGAC-CTAGCTCGGGAGGTGATGC
66 GATGCTCGGGAGAGTG-CGCTAGCCCGGGAGATGATGC
6857324 AATGGGAGGT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
105 87 0.99
106 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.36, T:0.24
Consensus pattern (105 bp):
ATGATTCTTGGGAGAGTGCACAGGCACCAGAGATAAGGCTTCAGGTGATTCTGCAACATGGCCAG
GATGCTCGGGAGAGTGCGCTAGCCCGGGAGATGATGCTTC
Found at i:6862191 original size:10 final size:10
Alignment explanation
Indices: 6862176--6862205 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
6862166 CTAAATACCA
6862176 AAAAAAAAAG
1 AAAAAAAAAG
6862186 AAAAAAAAAG
1 AAAAAAAAAG
6862196 AAAAAGAAAA
1 AAAAA-AAAA
6862206 CCTAGTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:6862199 original size:16 final size:15
Alignment explanation
Indices: 6862175--6862205 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
6862165 CCTAAATACC
6862175 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
6862190 AAAAAGAAAAAGAAAA
1 AAAAA-AAAAAGAAAA
6862206 CCTAGTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:6868305 original size:20 final size:20
Alignment explanation
Indices: 6868276--6868315 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6868266 TTACAAGGGA
6868276 ACTCCAAGTAATAAGGTAAG
1 ACTCCAAGTAATAAGGTAAG
*
6868296 ACTCCTAGTAATAAGGTAAG
1 ACTCCAAGTAATAAGGTAAG
6868316 TTTTCTGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (20 bp):
ACTCCAAGTAATAAGGTAAG
Found at i:6871736 original size:11 final size:11
Alignment explanation
Indices: 6871720--6871754 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
6871710 GCTAGTGTCG
6871720 TATACGAGTCA
1 TATACGAGTCA
6871731 TATACGAGTTCA
1 TATACGAG-TCA
6871743 TATACGAGTCA
1 TATACGAGTCA
6871754 T
1 T
6871755 TGACTATACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (11 bp):
TATACGAGTCA
Found at i:6871745 original size:12 final size:12
Alignment explanation
Indices: 6871720--6871751 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
6871710 GCTAGTGTCG
6871720 TATACGAG-TCA
1 TATACGAGTTCA
6871731 TATACGAGTTCA
1 TATACGAGTTCA
6871743 TATACGAGT
1 TATACGAGT
6871752 CATTGACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (12 bp):
TATACGAGTTCA
Found at i:6874410 original size:17 final size:18
Alignment explanation
Indices: 6874374--6874411 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6874364 TTATGTTTAA
6874374 AAAATTGAATAATGAATT
1 AAAATTGAATAATGAATT
6874392 AAAATT-AATTAAT-AATT
1 AAAATTGAA-TAATGAATT
6874409 AAA
1 AAA
6874412 TGTGTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
AAAATTGAATAATGAATT
Found at i:6874792 original size:463 final size:476
Alignment explanation
Indices: 6874212--6875170 Score: 1559
Period size: 488 Copynumber: 2.0 Consensus size: 476
6874202 TTATCGAAGT
* *
6874212 AATTGATATATTTTAATTATGGATATTAGTTATTATTTTGAATAATGTTTTTGTATTAAGTAAAT
1 AATTGATATATTTTAATTATGGATATTAGTTATTATTTTGAATAATATTCTTGTATTAAGTAAAT
*
6874277 TTATTTTTTTTCATTGAATATGATAGTGCTTTAATTAAAATTTAAATTTTTTTTATTATGATTGA
66 TTATTTTTTTTCATTGAATATGATAATGCTTTAATTAAAATTTAAATTTTTTTTATTATGATTGA
6874342 ATTATTAAATAATATATTTTAATTATGTTTAAAAAATTGAATAATG-AA-T-T-AA-A-A-TT-A
131 ATTATTAAATAATATATTTTAATTATGTTTAAAAAATTGAATAATGAAATTATAAATATATTTAA
*
6874399 -A-TTAATAATTAAATGTGTAAAATTATTTTTACATAAATAAAACATAAAATATTAATAATTTAA
196 TATTTAATAATTAAATGCGTAAAATTATTTTTACATAAATAAAACATAAAATATTAATAATTTAA
6874462 AAATATGTAAATCTACTATTTTGAATAATCTACCAACCGGCTAGGTCGGCTGAGTTAGGTGACCA
261 AAATATGTAAATCTACTATTTTGAATAATCTACCAACCGGCTAGGTCGGCTGAGTTAGGTGACCA
*
6874527 TTTTCAAGCTAGAGGCTTGAGCCGGCGGATTTAA-A-T-CGCATCTTAGAACTAAGATCAGTTAC
326 TTTTCAAGCTAGAGGCTTGAGCCGGCGAATTTAATATTCCGCATCTTAGAACTAAGATCAGTTAC
6874589 TATATTCTTTAATGACCTTGCAAATAGGGTGTAACCAATGTATTCTGGATTGGATTGGATTAGTC
391 TATATTCTTTAATGACCTTGCAAATAGGGTGTAACCAATGTATTCTGGATTGGATTGGATTAGTC
*
6874654 AATTAGATCAGTTAAATTTAA
456 AATTAGATCAGTTAAATTCAA
6874675 AATTGATATATTTTAATTATGGATATTAGTTATTATTTTGAATAATATTCTTGTATTAAGTAAAT
1 AATTGATATATTTTAATTATGGATATTAGTTATTATTTTGAATAATATTCTTGTATTAAGTAAAT
* *
6874740 TTA-TTTTTTTCATTGAATATGATAATGCTTTAATTAAAATTTTAATTTTTTTTTGTTATGATTG
66 TTATTTTTTTTCATTGAATATGATAATGCTTTAATTAAAA-TTTAAATTTTTTTTATTATGATTG
6874804 AATTATTAAATAATATATTTTAATTATGTTTAAAAAATTGAATAATGAATTAAAAATTAATAAAA
130 AATTATTAAATAATATATTTTAATTATGTTTAAAAAATTGAATAATG------AAATT-AT--AA
6874869 ATATTATTTAAAAAATTATTTAATAATTAAATGCGTAAAATTATTTTTACATAAATAAAACATAA
186 ATA-TATTT----AA-TATTTAATAATTAAATGCGTAAAATTATTTTTACATAAATAAAACATAA
*
6874934 AATATTAATAATTTAAAAATATGTAAATCTACTATTTTGAATAATCTACCAACCGGCTAGGTTGG
245 AATATTAATAATTTAAAAATATGTAAATCTACTATTTTGAATAATCTACCAACCGGCTAGGTCGG
6874999 CTGAGTTAGGTGACCATTTTCAAGCTAGAGGCTTGAGCCGGCGAATTTAATATTTCCGCATCTTA
310 CTGAGTTAGGTGACCATTTTCAAGCTAGAGGCTTGAGCCGGCGAATTTAATA-TTCCGCATCTTA
* *
6875064 GAACTAATATTAGTTACTATATTCTTTAATGACCTTGCAAATAGGGTGTAACCAATGTATTCTGG
374 GAACTAAGATCAGTTACTATATTCTTTAATGACCTTGCAAATAGGGTGTAACCAATGTATTCTGG
*
6875129 ATTGGATTGGATTAGTCGATTAGATCAGTTAAATTCAA
439 ATTGGATTGGATTAGTCAATTAGATCAGTTAAATTCAA
6875167 AATT
1 AATT
6875171 AATTGAGATA
Statistics
Matches: 454, Mismatches: 12, Indels: 31
0.91 0.02 0.06
Matches are distributed among these distances:
462 35 0.08
463 135 0.30
470 2 0.00
471 1 0.00
473 1 0.00
476 2 0.00
477 1 0.00
479 1 0.00
480 2 0.00
485 1 0.00
487 1 0.00
488 158 0.35
489 1 0.00
491 1 0.00
492 112 0.25
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.42
Consensus pattern (476 bp):
AATTGATATATTTTAATTATGGATATTAGTTATTATTTTGAATAATATTCTTGTATTAAGTAAAT
TTATTTTTTTTCATTGAATATGATAATGCTTTAATTAAAATTTAAATTTTTTTTATTATGATTGA
ATTATTAAATAATATATTTTAATTATGTTTAAAAAATTGAATAATGAAATTATAAATATATTTAA
TATTTAATAATTAAATGCGTAAAATTATTTTTACATAAATAAAACATAAAATATTAATAATTTAA
AAATATGTAAATCTACTATTTTGAATAATCTACCAACCGGCTAGGTCGGCTGAGTTAGGTGACCA
TTTTCAAGCTAGAGGCTTGAGCCGGCGAATTTAATATTCCGCATCTTAGAACTAAGATCAGTTAC
TATATTCTTTAATGACCTTGCAAATAGGGTGTAACCAATGTATTCTGGATTGGATTGGATTAGTC
AATTAGATCAGTTAAATTCAA
Found at i:6883477 original size:20 final size:18
Alignment explanation
Indices: 6883452--6883492 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
6883442 GAAAATAGAA
6883452 AAATAATAAAAAGTTATTAT
1 AAATAATAAAAA--TATTAT
*
6883472 AAATAATTAAAATATTAT
1 AAATAATAAAAATATTAT
6883490 AAA
1 AAA
6883493 ATTATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
20 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AAATAATAAAAATATTAT
Found at i:6883499 original size:19 final size:18
Alignment explanation
Indices: 6883452--6883503 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
6883442 GAAAATAGAA
*
6883452 AAATAATAAAAAGTTATTAT
1 AAATAATTAAAA--TATTAT
6883472 AAATAATTAAAATATTAT
1 AAATAATTAAAATATTAT
*
6883490 AAAATTATTAAAAT
1 -AAATAATTAAAAT
6883504 TATGAACTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 6 0.21
19 12 0.41
20 11 0.38
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AAATAATTAAAATATTAT
Found at i:6883558 original size:11 final size:10
Alignment explanation
Indices: 6883458--6883606 Score: 57
Period size: 10 Copynumber: 15.4 Consensus size: 10
6883448 AGAAAAATAA
6883458 TAAAAAGTTAT
1 TAAAAA-TTAT
* *
6883469 TATAAATAAT
1 TAAAAATTAT
6883479 T-AAAA-TAT
1 TAAAAATTAT
6883487 TATAAAATTAT
1 TA-AAAATTAT
6883498 T-AAAATTAT
1 TAAAAATTAT
* **
6883507 GAACTATTA-
1 TAAAAATTAT
6883516 TAGAAAATTA-
1 TA-AAAATTAT
*
6883526 TAGAAAA-AAT
1 TA-AAAATTAT
*
6883536 TTAAAATTAT
1 TAAAAATTAT
6883546 TAAAAATTTAT
1 TAAAAA-TTAT
*
6883557 T-AAAGTTAT
1 TAAAAATTAT
* * *
6883566 TAGAACTTAA
1 TAAAAATTAT
**
6883576 TAAATGTTA-
1 TAAAAATTAT
6883585 TAAAAATTA-
1 TAAAAATTAT
*
6883594 GAAAAA-TAT
1 TAAAAATTAT
6883603 TAAA
1 TAAA
6883607 GTATTATAAT
Statistics
Matches: 103, Mismatches: 25, Indels: 22
0.69 0.17 0.15
Matches are distributed among these distances:
8 5 0.05
9 37 0.36
10 47 0.46
11 14 0.14
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.37
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:6883630 original size:39 final size:39
Alignment explanation
Indices: 6883587--6883661 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
6883577 AAATGTTATA
**
6883587 AAAATTAGAA-AAATATTAAAGTATTATAATTTTTTTTAG
1 AAAATTAGAAGAAATA-TAAAAAATTATAATTTTTTTTAG
* *
6883626 AAAATTATAAGAAATATAAAAAATTATGATTTTTTT
1 AAAATTAGAAGAAATATAAAAAATTATAATTTTTTT
6883662 AAATTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 26 0.84
40 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.43
Consensus pattern (39 bp):
AAAATTAGAAGAAATATAAAAAATTATAATTTTTTTTAG
Found at i:6888368 original size:24 final size:21
Alignment explanation
Indices: 6888341--6888391 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 21
6888331 TAAGTGAAAC
6888341 AAATATTATTATATTTATTAATAT
1 AAAT-TTATT-TATTT-TTAATAT
6888365 AAATTTATTTATTTTTAAT-T
1 AAATTTATTTATTTTTAATAT
*
6888385 AATTTTA
1 AAATTTA
6888392 AATTGAAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 7 0.27
21 5 0.19
22 5 0.19
23 5 0.19
24 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AAATTTATTTATTTTTAATAT
Found at i:6888912 original size:19 final size:18
Alignment explanation
Indices: 6888862--6888918 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
6888852 ATTTTTTTAG
6888862 AAAATTATAAGAAATATAA
1 AAAATTATAA-AAATATAA
* **
6888881 AAAACTATGAAAAATATTTT
1 AAAATTAT-AAAAATA-TAA
*
6888901 AAAATTATAAAACTATAA
1 AAAATTATAAAAATATAA
6888919 TATAAATAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 1 0.03
19 18 0.62
20 10 0.34
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (18 bp):
AAAATTATAAAAATATAA
Found at i:6891493 original size:16 final size:16
Alignment explanation
Indices: 6891453--6891496 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
6891443 TTCTATATAT
*
6891453 TTTA-AGTTCAAATTA
1 TTTAGAGTTTAAATTA
*
6891468 TTTCGAGTTTAAATTA
1 TTTAGAGTTTAAATTA
*
6891484 TTTAGGGTTTAAA
1 TTTAGAGTTTAAA
6891497 GCATTTTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (16 bp):
TTTAGAGTTTAAATTA
Found at i:6891910 original size:21 final size:22
Alignment explanation
Indices: 6891867--6891910 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
6891857 CCATCTTTAC
*
6891867 CCACACTTTTATAATAATAATT
1 CCACACTTTTATAATAACAATT
6891889 CCAC-CTTTTA-AATAACACATT
1 CCACACTTTTATAATAACA-ATT
6891910 C
1 C
6891911 AAACCCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (22 bp):
CCACACTTTTATAATAACAATT
Found at i:6899826 original size:131 final size:131
Alignment explanation
Indices: 6899592--6899848 Score: 381
Period size: 131 Copynumber: 2.0 Consensus size: 131
6899582 TAATTATCCA
* * * *
6899592 TTTAAAAATTCTTAAAAACGAAGGCAATGTTCGATGCTTGGCAATTCGGGGAATCGTGCCCTATT
1 TTTAAAAATTCTTAAAAACGAAGGCAATGTTCGATGCTTGGCAATTCGAGGAATAGTACCCTATC
* *
6899657 GTGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATGTTCCTTTGGAATTTCACTCATGT
66 GTGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTCCACTCATGT
6899722 C
131 C
* * * *
6899723 TTTAAAAATTCTTCAAAAA-TAAGGTAATGTTCGGTGTTTGGCAATTCGAGGAATAGTACCCTAT
1 TTTAAAAATTCTT-AAAAACGAAGGCAATGTTCGATGCTTGGCAATTCGAGGAATAGTACCCTAT
* * *
6899787 CGTGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATTTCTTTGGAATTCCACTC
65 CGTGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTCCACTC
6899849 GTGTTTTCTA
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
131 107 0.96
132 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (131 bp):
TTTAAAAATTCTTAAAAACGAAGGCAATGTTCGATGCTTGGCAATTCGAGGAATAGTACCCTATC
GTGCTAGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTCCACTCATGT
C
Found at i:6906903 original size:20 final size:21
Alignment explanation
Indices: 6906880--6906950 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 21
6906870 AATAAAAGTG
6906880 ATAAAAAATATT-AAATTTTA
1 ATAAAAAATATTAAAATTTTA
*
6906900 AT--AAAATATTAAAATTATA
1 ATAAAAAATATTAAAATTTTA
6906919 A-AAAAAAT-TGTAAAATTTT-
1 ATAAAAAATAT-TAAAATTTTA
*
6906938 ATAAAAATTATTA
1 ATAAAAAATATTA
6906951 TAAAATTATA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
18 8 0.19
19 10 0.24
20 23 0.55
21 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (21 bp):
ATAAAAAATATTAAAATTTTA
Found at i:6906959 original size:20 final size:20
Alignment explanation
Indices: 6906909--6906963 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 20
6906899 AATAAAATAT
*
6906909 TAAAATTATAAAAAAAATTG
1 TAAAATTATAAAAAAAATTA
**
6906929 TAAAATTTTATAAAAATTATTA
1 TAAAA--TTATAAAAAAAATTA
6906951 TAAAATTATAAAA
1 TAAAATTATAAAA
6906964 TGTACTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.43
22 17 0.57
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
TAAAATTATAAAAAAAATTA
Found at i:6907283 original size:9 final size:9
Alignment explanation
Indices: 6907271--6907395 Score: 53
Period size: 9 Copynumber: 13.6 Consensus size: 9
6907261 ATTATAAATT
6907271 TTTTTATAA
1 TTTTTATAA
6907280 TTTTT-TACTA
1 TTTTTATA--A
6907290 TTTTTATAA
1 TTTTTATAA
*
6907299 TATTCTTCT-A
1 T-TT-TTATAA
6907309 TTTTTAATAA
1 TTTTT-ATAA
*
6907319 ATTTTA-AA
1 TTTTTATAA
* *
6907327 TATTTATTA
1 TTTTTATAA
*
6907336 CTTTTATTAAA
1 TTTTTA-T-AA
* *
6907347 ATTTAATAA
1 TTTTTATAA
6907356 TTTTTATAA
1 TTTTTATAA
* *
6907365 CTTTTATTGA
1 TTTTTA-TAA
6907375 TTTTTAT--
1 TTTTTATAA
*
6907382 TTTTTATCA
1 TTTTTATAA
6907391 TTTTT
1 TTTTT
6907396 TGCCACATGT
Statistics
Matches: 87, Mismatches: 16, Indels: 26
0.67 0.12 0.20
Matches are distributed among these distances:
7 7 0.08
8 10 0.11
9 36 0.41
10 24 0.28
11 10 0.11
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:6907295 original size:19 final size:19
Alignment explanation
Indices: 6907271--6907314 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
6907261 ATTATAAATT
*
6907271 TTTTTATAAT-TTTTTACTA
1 TTTTTATAATATTCTT-CTA
6907290 TTTTTATAATATTCTTCTA
1 TTTTTATAATATTCTTCTA
6907309 TTTTTA
1 TTTTTA
6907315 ATAAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTATAATATTCTTCTA
Found at i:6907321 original size:58 final size:58
Alignment explanation
Indices: 6907214--6907327 Score: 135
Period size: 58 Copynumber: 2.0 Consensus size: 58
6907204 CTTTAAAAAA
* *
6907214 TTTTATAATTTTTTTATATTTTTCTATCTTTTATGATTTTTATAAAAATTATAAATTT
1 TTTTATAATTTTTTTATATTTTTATATATTTTATGATTTTTATAAAAATTATAAATTT
* * *
6907272 TTTTATAA-TTTTTTACTATTTTTATAATATTCTTCT-ATTTTTA-ATAAATTTTAAAT
1 TTTTATAATTTTTTTA-TATTTTTAT-ATATT-TTATGATTTTTATAAAAATTATAAAT
6907328 ATTTATTACT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
57 7 0.15
58 27 0.56
59 11 0.23
60 3 0.06
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (58 bp):
TTTTATAATTTTTTTATATTTTTATATATTTTATGATTTTTATAAAAATTATAAATTT
Found at i:6907359 original size:19 final size:20
Alignment explanation
Indices: 6907322--6907359 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
6907312 TTAATAAATT
* *
6907322 TTAAATATTTATTACTTTTA
1 TTAAATATTTAATAATTTTA
6907342 TTAAA-ATTTAATAATTTT
1 TTAAATATTTAATAATTTT
6907360 TATAACTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (20 bp):
TTAAATATTTAATAATTTTA
Found at i:6909353 original size:34 final size:34
Alignment explanation
Indices: 6909310--6909377 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
6909300 TTCAACCCTC
*
6909310 ACAACAATTTTCTGTCTTCGCCTCTGAGTGGAAG
1 ACAACAATTTTCTGACTTCGCCTCTGAGTGGAAG
6909344 ACAACAATTTTCTGACTTCGCCTCTGAGTGGAAG
1 ACAACAATTTTCTGACTTCGCCTCTGAGTGGAAG
6909378 GCGAGCATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (34 bp):
ACAACAATTTTCTGACTTCGCCTCTGAGTGGAAG
Found at i:6912885 original size:23 final size:24
Alignment explanation
Indices: 6912845--6912905 Score: 72
Period size: 22 Copynumber: 2.6 Consensus size: 24
6912835 AAATATTTTA
*
6912845 ATATTTTTAAAAAATTATAAAAA-
1 ATATTATTAAAAAATTATAAAAAT
*
6912868 A-ATTATTAAAAATGTTATAAAAAT
1 ATATTATTAAAAA-ATTATAAAAAT
*
6912892 ATTTTATTAAAAAA
1 ATATTATTAAAAAA
6912906 ATAACAATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 10 0.32
23 10 0.32
24 1 0.03
25 10 0.32
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
ATATTATTAAAAAATTATAAAAAT
Found at i:6912891 original size:11 final size:11
Alignment explanation
Indices: 6912852--6912894 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
6912842 TTAATATTTT
6912852 TAAAAA-ATTA
1 TAAAAATATTA
*
6912862 TAAAAAAATTA
1 TAAAAATATTA
*
6912873 TTAAAAATGTTA
1 -TAAAAATATTA
6912885 TAAAAATATT
1 TAAAAATATT
6912895 TTATTAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 6 0.21
11 13 0.46
12 9 0.32
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
TAAAAATATTA
Found at i:6914116 original size:19 final size:20
Alignment explanation
Indices: 6914081--6914118 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6914071 TTAAATTAAC
*
6914081 ATAAAATGTTAAAAATAAAG
1 ATAAAATGGTAAAAATAAAG
6914101 ATAAAATGGT-AAAATAAA
1 ATAAAATGGTAAAAATAAA
6914119 AAATTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.24
Consensus pattern (20 bp):
ATAAAATGGTAAAAATAAAG
Found at i:6917997 original size:24 final size:24
Alignment explanation
Indices: 6917969--6918029 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
6917959 AACCGAATTT
* * *
6917969 GCACACATAGTGCTA-ATTATACTC
1 GCACACATAGTGCCATAGTAAAC-C
6917993 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
6918017 GCACACATAGTGC
1 GCACACATAGTGC
6918030 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:6921909 original size:44 final size:44
Alignment explanation
Indices: 6921846--6921934 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
6921836 GAAGTAAATA
6921846 TGTAAAAGTTTAAGGGCAAAAATGTAATTTTGCCAAAGTTTGAG
1 TGTAAAAGTTTAAGGGCAAAAATGTAATTTTGCCAAAGTTTGAG
*
6921890 TGTAAAAGTTTAGGGGCAAAAATGTAATTTTGCCAAAGTTTGAG
1 TGTAAAAGTTTAAGGGCAAAAATGTAATTTTGCCAAAGTTTGAG
6921934 T
1 T
6921935 CAAGGACTGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.33
Consensus pattern (44 bp):
TGTAAAAGTTTAAGGGCAAAAATGTAATTTTGCCAAAGTTTGAG
Found at i:6922355 original size:55 final size:54
Alignment explanation
Indices: 6922268--6922522 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
6922258 ATTAGGGTTT
*
6922268 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
6922323 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
6922378 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
6922431 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
*** * *
6922480 AAGGATACCCCATAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
6922523 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 38 0.22
52 7 0.04
53 41 0.24
54 12 0.07
55 70 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:6922474 original size:108 final size:110
Alignment explanation
Indices: 6922275--6922475 Score: 336
Period size: 108 Copynumber: 1.8 Consensus size: 110
6922265 TTTAAGGATA
*
6922275 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
6922340 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
*
6922385 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
6922447 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
6922476 TCAAAAGGAT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
107 3 0.03
108 49 0.57
109 7 0.08
110 27 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:6922617 original size:23 final size:24
Alignment explanation
Indices: 6922591--6922635 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
6922581 AAGGTAAAGT
6922591 AAGGTAAGA-AGAGTT-ATGCTAAA
1 AAGGTAAGACA-AGTTCATGCTAAA
6922614 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
6922636 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:6922735 original size:16 final size:16
Alignment explanation
Indices: 6922714--6922744 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6922704 ATAAATTTGA
6922714 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
6922730 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
6922745 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:6928573 original size:21 final size:21
Alignment explanation
Indices: 6928524--6928592 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
6928514 TAAAAAAATT
*
6928524 AATA-AATTAAAAATATTAAA
1 AATATAATTAAAAATAATAAA
*
6928544 TAT-TGAATTAAAAATAATAAA
1 AATAT-AATTAAAAATAATAAA
*
6928565 AATATAATTTTAAAA-AATAAA
1 AATATAA-TTAAAAATAATAAA
6928586 AA-ATAAT
1 AATATAAT
6928593 ATGGGCAGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
19 1 0.02
20 6 0.15
21 27 0.66
22 7 0.17
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (21 bp):
AATATAATTAAAAATAATAAA
Found at i:6931236 original size:284 final size:283
Alignment explanation
Indices: 6930711--6931283 Score: 920
Period size: 284 Copynumber: 2.0 Consensus size: 283
6930701 GTATACATAT
* *
6930711 TTATAATACGCATAATATGTTGCTTTATTAAAAACCTTATCAGGAAAACCCAATGGGACAAAACC
1 TTATAATACGCATAATATGTTGCTTCATTAAAAACCTTATCAGGAAAACCCAATAGGACAAAACC
* *
6930776 TCGGTTAAGGGAAAAAGAGTACAACGCGTATTTATTCCCCTCATGAAAACATCACATACTTTCTC
66 TCGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCTCATGAAAACATCACATACTTTCTC
6930841 ATAATCTACGTATTCAATCTTGAATACTAGTATTTCAAATGACTATTTGAAATGTATTTGCTAAC
131 ATAATCTACGTATTCAATCTTGAATACTAGTATTTCAAATGACTATTTGAAATGTATTTGCTAAC
* *
6930906 AATTTATATCACCATTCTTTTGAAAGTCATTAATAAGGGGAAATTTTAGG-AAAATATATTTTAA
196 AATTCATATCACCATTCTTTTGAAAGTCATTAATAAGGGAAAATTTT-GGAAAAATATATTTTAA
6930970 TCTCTTCAAG-AGTTTCAACAATAA
260 TCTCTT-AAGAAGTTTCAACAATAA
* *
6930994 TCTATAATACGCATAATATGTTG-TCTCATTAAAAACCTTATTAGGAAAACCTAATAGGACAAAA
1 T-TATAATACGCATAATATGTTGCT-TCATTAAAAACCTTATCAGGAAAACCCAATAGGACAAAA
* * *
6931058 TCTCGGTTGAGGGAAAAAGAGTACAACACGTATTTACTCCCCTTCATGAAAACATTACATACTTT
64 CCTCGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCC-TCATGAAAACATCACATACTTT
* *
6931123 CTCATAATCTACGTATTCAATCTTGAATACTAGTTTTTCAAATGATTATTTG-AATGTATTTGCT
128 CTCATAATCTACGTATTCAATCTTGAATACTAGTATTTCAAATGACTATTTGAAATGTATTTGCT
* * *
6931187 AACCATTCATATCACCTTTCTTTTGAAAGTCATTAGTAAGGGAAAATTTTGGAAAAATATATTTT
193 AACAATTCATATCACCATTCTTTTGAAAGTCATTAATAAGGGAAAATTTTGGAAAAATATATTTT
*
6931252 AATCTCTTTAGAAGTTTCAACAATAA
258 AATCTCTTAAGAAGTTTCAACAATAA
6931278 TTATAA
1 TTATAA
6931284 CAAACTTTAA
Statistics
Matches: 268, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
283 11 0.04
284 186 0.69
285 71 0.26
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (283 bp):
TTATAATACGCATAATATGTTGCTTCATTAAAAACCTTATCAGGAAAACCCAATAGGACAAAACC
TCGGTTAAGGGAAAAAGAGTACAACACGTATTTACTCCCCTCATGAAAACATCACATACTTTCTC
ATAATCTACGTATTCAATCTTGAATACTAGTATTTCAAATGACTATTTGAAATGTATTTGCTAAC
AATTCATATCACCATTCTTTTGAAAGTCATTAATAAGGGAAAATTTTGGAAAAATATATTTTAAT
CTCTTAAGAAGTTTCAACAATAA
Done.