Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 240 of 253
Found at i:77625555 original size:33 final size:33
Alignment explanation
Indices: 77625518--77625613 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 33
77625508 CAACTCCTAT
*
77625518 CTGATTAACCTGGCTGGTCCGCGTTGGCTCCGG
1 CTGATTAACCTGGCTGGTCCGCGTAGGCTCCGG
* * *
77625551 CTGATTAAGCTGGCTCGAT-TGCGTAGGCTCCGG
1 CTGATTAACCTGGCT-GGTCCGCGTAGGCTCCGG
* * * *
77625584 CCGGTTAACCTGGCTTGTCCGTGTAGGCTC
1 CTGATTAACCTGGCTGGTCCGCGTAGGCTC
77625614 TGGCCGACTA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
32 1 0.02
33 47 0.94
34 2 0.04
ACGTcount: A:0.11, C:0.28, G:0.32, T:0.28
Consensus pattern (33 bp):
CTGATTAACCTGGCTGGTCCGCGTAGGCTCCGG
Found at i:77625932 original size:48 final size:48
Alignment explanation
Indices: 77625880--77626150 Score: 314
Period size: 48 Copynumber: 5.5 Consensus size: 48
77625870 AACAGCGTTT
*
77625880 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGTTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGTTGCATAAACA
77625928 GCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGTTGCATAAACA
1 ------GCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGTTGCATAAACA
* * *
77625982 GCGTTTGCGTTTCCTTCGGAGGCGGAGGAGCCGGCGGCTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGTTGCATAAACA
* * * * * *
77626030 ACGTCTGCGTTTCCTTAGGAGGCGGAGGAGCAGGCGGTTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGTTGCATAAACA
* *
77626078 GCGTTTGCGTCTCTTTCGGAGGCGCA-GA--CGGTGGCTGTTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGT-G--GTTGCATAAACA
* *
77626126 GCGTCTGCGTCTCTTTCGGAGGCGG
1 GCGTTTGCGTTTCTTTCGGAGGCGG
77626151 CGGCGGTTGC
Statistics
Matches: 195, Mismatches: 19, Indels: 12
0.86 0.08 0.05
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 2 0.01
48 143 0.73
54 47 0.24
ACGTcount: A:0.16, C:0.22, G:0.37, T:0.25
Consensus pattern (48 bp):
GCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGTTGCATAAACA
Found at i:77625945 original size:54 final size:54
Alignment explanation
Indices: 77625857--77626087 Score: 297
Period size: 54 Copynumber: 4.5 Consensus size: 54
77625847 TTTCTTTTGG
* *
77625857 CGGCGATTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGCGC
1 CGGCGGTTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGC
*
77625911 CGGTGGTTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGC
1 CGGCGGTTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGC
*
77625965 CGGTGGTTGCATAAACAGCGTTTGCGTTT-C----C-TTCGGAGGCGGAGGAGC
1 CGGCGGTTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGC
* * * *
77626013 CGGCGGCTGCATAAACAACG--T-C---TGCGTTTCCTTAGGAGGCGGAGGAGC
1 CGGCGGTTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGC
*
77626061 AGGCGGTTGCATAAACAGCGTTTGCGT
1 CGGCGGTTGCATAAACAGCGTTTGCGT
77626088 CTCTTTCGGA
Statistics
Matches: 156, Mismatches: 10, Indels: 23
0.83 0.05 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 67 0.43
49 1 0.01
50 1 0.01
51 1 0.01
53 1 0.01
54 80 0.51
ACGTcount: A:0.17, C:0.21, G:0.36, T:0.26
Consensus pattern (54 bp):
CGGCGGTTGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGC
Found at i:77628865 original size:13 final size:14
Alignment explanation
Indices: 77628848--77628884 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
77628838 ACAAAAAGCA
77628848 AAAATTTAATTATC
1 AAAATTTAATTATC
*
77628862 -AAATTTAA-CATC
1 AAAATTTAATTATC
77628874 AAAATTTAATT
1 AAAATTTAATT
77628885 TAAAACTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTTAATTATC
Found at i:77632516 original size:31 final size:33
Alignment explanation
Indices: 77632475--77632556 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 33
77632465 AATTTATATA
*
77632475 TTTATAATTTTTAAAAAATT-AAACG-AATTTT
1 TTTATTATTTTTAAAAAATTAAAACGTAATTTT
* *
77632506 TTTATTA-TTTTAAAGAGATTAAAATGTAATTTT
1 TTTATTATTTTTAAA-AAATTAAAACGTAATTTT
*
77632539 ATTATTATTAATTTAAAA
1 TTTATTATT--TTTAAAA
77632557 TTTTATAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
30 7 0.17
31 10 0.24
32 4 0.10
33 12 0.29
34 1 0.02
35 1 0.02
36 6 0.15
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (33 bp):
TTTATTATTTTTAAAAAATTAAAACGTAATTTT
Found at i:77632519 original size:30 final size:33
Alignment explanation
Indices: 77632483--77632547 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
77632473 TATTTATAAT
*
77632483 TTTTAAA-AAATT-AAACG-AATTTTTTTATTA
1 TTTTAAAGAAATTAAAACGTAATTTTATTATTA
* *
77632513 TTTTAAAGAGATTAAAATGTAATTTTATTATTA
1 TTTTAAAGAAATTAAAACGTAATTTTATTATTA
77632546 TT
1 TT
77632548 AATTTAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 7 0.24
31 4 0.14
32 4 0.14
33 14 0.48
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (33 bp):
TTTTAAAGAAATTAAAACGTAATTTTATTATTA
Found at i:77634544 original size:20 final size:22
Alignment explanation
Indices: 77634519--77634561 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
77634509 TTTTATTTAA
77634519 TTTATAA-AT-AAATTTAAATT
1 TTTATAATATAAAATTTAAATT
*
77634539 TTTATAATATAAAATTTATATT
1 TTTATAATATAAAATTTAAATT
77634561 T
1 T
77634562 AAAGAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 2 0.10
22 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTATAATATAAAATTTAAATT
Found at i:77638895 original size:21 final size:21
Alignment explanation
Indices: 77638852--77638895 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
77638842 TTATATACTT
* **
77638852 CTTTTAGATTTTTTTTTTTTA
1 CTTTTAGAATTTTTTTTAGTA
*
77638873 CTTTTGGAATTTTTTTTAGTA
1 CTTTTAGAATTTTTTTTAGTA
77638894 CT
1 CT
77638896 CGCTAAATAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.07, G:0.09, T:0.68
Consensus pattern (21 bp):
CTTTTAGAATTTTTTTTAGTA
Found at i:77641056 original size:18 final size:19
Alignment explanation
Indices: 77641028--77641064 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
77641018 TAATGGCAAC
77641028 TTTCATTGCTTTTGGTGTT
1 TTTCATTGCTTTTGGTGTT
*
77641047 TTTC-TTGCTTTTTGTGTT
1 TTTCATTGCTTTTGGTGTT
77641065 GGGCACTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.03, C:0.11, G:0.19, T:0.68
Consensus pattern (19 bp):
TTTCATTGCTTTTGGTGTT
Found at i:77648775 original size:23 final size:21
Alignment explanation
Indices: 77648749--77648795 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
77648739 AAAAGTGCCT
77648749 TAAAATTATTATATTTTAAGGAA
1 TAAAA-TATT-TATTTTAAGGAA
* *
77648772 TAAAATGTTTATTTTGAGGAA
1 TAAAATATTTATTTTAAGGAA
77648793 TAA
1 TAA
77648796 TATTTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 3 0.14
23 5 0.23
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.43
Consensus pattern (21 bp):
TAAAATATTTATTTTAAGGAA
Found at i:77648909 original size:24 final size:23
Alignment explanation
Indices: 77648870--77648927 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
77648860 TTCATATTTT
* *
77648870 AATATATA-AAATATAAATTTTA
1 AATATTTATAAATATAAATATTA
*
77648892 AATATTTTTAAATAATAAATATTA
1 AATATTTATAAAT-ATAAATATTA
*
77648916 ATTATTTATAAA
1 AATATTTATAAA
77648928 AGTATTATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 6 0.21
23 4 0.14
24 19 0.66
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AATATTTATAAATATAAATATTA
Found at i:77654146 original size:16 final size:18
Alignment explanation
Indices: 77654111--77654158 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
77654101 TAATATTATC
77654111 TAAAAATATATATATTTT
1 TAAAAATATATATATTTT
*
77654129 TAAAAA-AT-TATCTTTT
1 TAAAAATATATATATTTT
*
77654145 T-AAATTATATATAT
1 TAAAAATATATATAT
77654159 CATTTCTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 6 0.24
18 6 0.24
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAAAAATATATATATTTT
Found at i:77654660 original size:6 final size:6
Alignment explanation
Indices: 77654649--77654674 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
77654639 TAATCCATAT
77654649 ATATAA ATATAA ATATAA ATATAA AT
1 ATATAA ATATAA ATATAA ATATAA AT
77654675 GTAACTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAA
Found at i:77654685 original size:18 final size:19
Alignment explanation
Indices: 77654649--77654692 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
77654639 TAATCCATAT
77654649 ATATAAATATAAATAT-AA
1 ATATAAATATAAATATAAA
* * *
77654667 ATATAAATGTAACTTTAAA
1 ATATAAATATAAATATAAA
77654686 ATATAAA
1 ATATAAA
77654693 ATTACATTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (19 bp):
ATATAAATATAAATATAAA
Found at i:77655144 original size:8 final size:8
Alignment explanation
Indices: 77655131--77655159 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
77655121 AGACTGTTTG
77655131 AAAATTTT
1 AAAATTTT
77655139 AAAATTTT
1 AAAATTTT
77655147 AAAATTTT
1 AAAATTTT
77655155 AAAAT
1 AAAAT
77655160 AGTAAAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
AAAATTTT
Found at i:77655165 original size:16 final size:16
Alignment explanation
Indices: 77655131--77655165 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
77655121 AGACTGTTTG
**
77655131 AAAATTTTAAAATTTT
1 AAAATTTTAAAATAGT
77655147 AAAATTTTAAAATAGT
1 AAAATTTTAAAATAGT
77655163 AAA
1 AAA
77655166 GGTAAAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
AAAATTTTAAAATAGT
Found at i:77655680 original size:20 final size:21
Alignment explanation
Indices: 77655642--77655680 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
77655632 TTTTTTTTTA
*
77655642 TTTTTAATAATTATATTTACT
1 TTTTTAATAATAATATTTACT
*
77655663 TTTTTAA-AATAATTTTTA
1 TTTTTAATAATAATATTTA
77655681 ATCATTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTAATAATAATATTTACT
Found at i:77672864 original size:41 final size:41
Alignment explanation
Indices: 77672819--77673047 Score: 297
Period size: 41 Copynumber: 5.6 Consensus size: 41
77672809 CGGACGTTAC
77672819 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAA
77672860 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
77672901 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
77672942 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
77672983 GTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAATCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTGATACAT--TTCAGACTTTAA
* **
77673024 GCCTAGCAGGCAAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
77673048 ATCTGTTTAA
Statistics
Matches: 173, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
39 3 0.02
40 8 0.05
41 160 0.92
42 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
Found at i:77673428 original size:11 final size:12
Alignment explanation
Indices: 77673412--77673440 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
77673402 AATCGGTTTG
77673412 ATATGTATATA-
1 ATATGTATATAT
77673423 ATATGTATATAT
1 ATATGTATATAT
77673435 ATATGT
1 ATATGT
77673441 TCGGTGGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:77674177 original size:5 final size:5
Alignment explanation
Indices: 77674150--77674232 Score: 70
Period size: 5 Copynumber: 16.8 Consensus size: 5
77674140 CCTCCTATCT
*
77674150 TTTTA TTCTTA TTTT- TATTTA TTTTA TTTTA -TTTA TTTT- TCTT- TTTTA
1 TTTTA TT-TTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
77674198 TTTCTA TTTTCA TTTCTA TTTTA --TTA TTTTA TTTT
1 TTT-TA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
77674233 GAAAGACATA
Statistics
Matches: 66, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
3 3 0.05
4 11 0.17
5 32 0.48
6 19 0.29
7 1 0.02
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:77674207 original size:43 final size:44
Alignment explanation
Indices: 77674149--77674232 Score: 111
Period size: 43 Copynumber: 1.9 Consensus size: 44
77674139 TCCTCCTATC
* *
77674149 TTTTTATTCTTATTTTTA-TT-TATTTTATTTTATTTATTTTTCT
1 TTTTTATTCTTATTTTCATTTCTATTTTATTAT-TTTATTTTTCT
77674192 TTTTTATT-TCTATTTTCATTTCTATTTTATTATTTTATTTT
1 TTTTTATTCT-TATTTTCATTTCTATTTTATTATTTTATTTT
77674233 GAAAGACATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
42 1 0.03
43 15 0.42
44 10 0.28
45 10 0.28
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (44 bp):
TTTTTATTCTTATTTTCATTTCTATTTTATTATTTTATTTTTCT
Found at i:77674212 original size:12 final size:12
Alignment explanation
Indices: 77674187--77674219 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
77674177 TTTATTTATT
*
77674187 TTTCT-TTTTTA
1 TTTCTATTTTCA
77674198 TTTCTATTTTCA
1 TTTCTATTTTCA
77674210 TTTCTATTTT
1 TTTCTATTTT
77674220 ATTATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTCTATTTTCA
Found at i:77674213 original size:23 final size:22
Alignment explanation
Indices: 77674150--77674222 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
77674140 CCTCCTATCT
*
77674150 TTTTATTCTTATTTTTA-TT-TA
1 TTTTATT-TTATTTATATTTCTA
* *
77674171 TTTTATTTTATTTATTTTTCTT
1 TTTTATTTTATTTATATTTCTA
77674193 TTTTATTTCTATTT-TCATTTCTA
1 TTTTATTT-TATTTAT-ATTTCTA
77674216 TTTTATT
1 TTTTATT
77674223 ATTTTATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 7 0.16
21 9 0.21
22 10 0.23
23 17 0.40
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTATTTTATTTATATTTCTA
Found at i:77680583 original size:46 final size:46
Alignment explanation
Indices: 77680533--77680705 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
77680523 TGGTTGAGCA
* *
77680533 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
77680579 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
77680626 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
77680672 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77680706 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:77680689 original size:93 final size:93
Alignment explanation
Indices: 77680530--77680700 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
77680520 GGATGGTTGA
* * *
77680530 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
77680595 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
77680623 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
77680688 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77680701 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77684601 original size:22 final size:21
Alignment explanation
Indices: 77684566--77684678 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 21
77684556 AAAAGGTATC
* *
77684566 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
77684587 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
77684610 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
77684629 TGC-AATCACA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
77684647 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
77684666 TGC-AATCATATCT
1 TACAAATCATATCT
77684679 AAGATTGTAT
Statistics
Matches: 78, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
18 22 0.28
19 27 0.35
20 1 0.01
21 3 0.04
22 15 0.19
23 10 0.13
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:77684609 original size:23 final size:22
Alignment explanation
Indices: 77684566--77684623 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
77684556 AAAAGGTATC
* *
77684566 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
77684587 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
77684610 TGCATATCATATCT
1 TACAAATCATATCT
77684624 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:77684641 original size:18 final size:19
Alignment explanation
Indices: 77684602--77684710 Score: 172
Period size: 19 Copynumber: 5.9 Consensus size: 19
77684592 AATCATATCT
77684602 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
77684621 TCTAAGATTGCA-ATCACA
1 TCTAAGATTGCATATCATA
77684639 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
77684658 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
77684676 TCTAAGATTG--TATCATG
1 TCTAAGATTGCATATCATA
77684693 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
77684711 TGAAGATTAT
Statistics
Matches: 83, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
17 15 0.18
18 33 0.40
19 35 0.42
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:77684645 original size:37 final size:37
Alignment explanation
Indices: 77684602--77684709 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
77684592 AATCATATCT
77684602 TCTAAGATTGCATATCATATCTAAGATTGCAATCACA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCACA
*
77684639 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCACA
*
77684676 TCTAAGATTG--TATCATGTCTAAGATTGCATATCA
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCA
77684710 TTGAAGATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 18 0.26
36 4 0.06
37 46 0.68
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (37 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCACA
Found at i:77684730 original size:54 final size:55
Alignment explanation
Indices: 77684605--77684719 Score: 146
Period size: 54 Copynumber: 2.1 Consensus size: 55
77684595 CATATCTTCT
* *
77684605 AAGATTGCATATCATATCTAAGATTGCAATCACATCTAAGATTGCATATCATATCT
1 AAGATTACA-ATCATATCTAAGATTGCAATCACATCTAAGATTGCATATCATATCG
* * **
77684661 AAGATTGCAATCATATCTAAGATTG-TATCATGTCTAAGATTGCATATCAT-T-G
1 AAGATTACAATCATATCTAAGATTGCAATCACATCTAAGATTGCATATCATATCG
77684713 AAGATTA
1 AAGATTA
77684720 TATTTCCATA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
52 6 0.11
53 1 0.02
54 22 0.41
55 16 0.30
56 9 0.17
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (55 bp):
AAGATTACAATCATATCTAAGATTGCAATCACATCTAAGATTGCATATCATATCG
Found at i:77685126 original size:45 final size:45
Alignment explanation
Indices: 77685062--77685335 Score: 279
Period size: 45 Copynumber: 6.1 Consensus size: 45
77685052 GGAAGGTGAT
* * * *
77685062 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
77685107 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATATAAAGGTGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
77685152 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
77685196 ATCTGTTATC-TCTGATTTTCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
77685241 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
*
77685286 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
77685333 ATC
1 ATC
77685336 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 35, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
43 6 0.03
44 46 0.25
45 99 0.54
46 2 0.01
47 19 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:77685227 original size:89 final size:90
Alignment explanation
Indices: 77685062--77685335 Score: 272
Period size: 89 Copynumber: 3.0 Consensus size: 90
77685052 GGAAGGTGAT
** *
77685062 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
* *
77685127 TCCCCGTCTAATATAAAGGTGCCAA
66 TCCCCGTCTAATACAAAGATGCCAA
* * *
77685152 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATC-TCTGATTTT
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC-GATCTG
*
77685215 CTCCCCGTCTAATACAGAGATGCCAA
65 CTCCCCGTCTAATACAAAGATGCCAA
** * * * * * * *
77685241 ATCTG-TCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCTATGTCTTCG
1 ATCTGCT-ATCTTCAATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T-TATCTTCG
*
77685302 ATCTGCTCCCCGTCTAATACAGAGATGCCAA
60 ATCTGCTCCCCGTCTAATACAAAGATGCCAA
77685333 ATC
1 ATC
77685336 ATCTTGGATC
Statistics
Matches: 155, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
88 9 0.06
89 80 0.52
90 27 0.17
91 1 0.01
92 36 0.23
93 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
TCCCCGTCTAATACAAAGATGCCAA
Found at i:77685404 original size:78 final size:78
Alignment explanation
Indices: 77685275--77685569 Score: 466
Period size: 78 Copynumber: 3.8 Consensus size: 78
77685265 ATGTAAACAC
77685275 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
77685340 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
77685353 ATGAAGGTCTA-ATCTGTTATGTCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTC-AGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
77685417 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
77685431 ATGAAGGTCAGATCTACTGTGTCTTCGATTTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
77685496 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
77685509 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
77685570 TGTTTCTTCG
Statistics
Matches: 198, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 1 0.01
78 196 0.99
79 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:77685894 original size:220 final size:220
Alignment explanation
Indices: 77685512--77686100 Score: 1016
Period size: 220 Copynumber: 2.7 Consensus size: 220
77685502 TGCTTCAATG
77685512 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
*
77685577 TCGCTTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
66 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
77685642 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGG
131 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGG
77685707 ATCTACTTCGATATGAAAACATCCA
196 ATCTACTTCGATATGAAAACATCCA
77685732 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* * * *
77685797 TTGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAAATTTGCTTCAGTGTAAACACGT
66 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
*
77685862 AAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGG
131 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGG
* **
77685927 ATCTACTTCGATGTGAAAACATCTG
196 ATCTACTTCGATATGAAAACATCCA
77685952 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* * ** * * *
77686017 TCGATTTGTTCTCTGACAATACAAAGATGTTAAACCATCTTGGATCTGCTTCAGCGTAAACACCT
66 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
* *
77686082 GAAGGTCAAATCTGCTATG
131 GAAAGCCAAATCTGCTATG
77686101 CTTTAGCCCG
Statistics
Matches: 346, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
220 346 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (220 bp):
AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTGG
ATCTACTTCGATATGAAAACATCCA
Found at i:77694098 original size:19 final size:19
Alignment explanation
Indices: 77694074--77694218 Score: 221
Period size: 19 Copynumber: 7.9 Consensus size: 19
77694064 AATCATATCT
*
77694074 TCTAAGATTGCATATTATA
1 TCTAAGATTGCATATCATA
*
77694093 TCTAAGTTTGCA-ATCATA
1 TCTAAGATTGCATATCATA
77694111 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
77694128 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
77694147 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
77694165 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
77694182 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
77694201 TCTAAGATTACATATCAT
1 TCTAAGATTGCATATCAT
77694219 TGAAGATTAT
Statistics
Matches: 116, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
17 32 0.28
18 30 0.26
19 54 0.47
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:77694142 original size:54 final size:54
Alignment explanation
Indices: 77694074--77694218 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
77694064 AATCATATCT
* *
77694074 TCTAAGATTGCATATTATATCTAAGTTTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
77694128 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
77694182 TCTAAGATTGCATATCATATCTAAGATTACATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
77694219 TGAAGATTAT
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 82 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:77694143 original size:14 final size:15
Alignment explanation
Indices: 77694106--77694197 Score: 78
Period size: 17 Copynumber: 5.5 Consensus size: 15
77694096 AAGTTTGCAA
77694106 TCATATCTAAGATTG
1 TCATATCTAAGATTG
77694121 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
77694138 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
77694157 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
77694175 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
77694192 -CATATC
1 TCATATC
77694198 ATATCTAAGA
Statistics
Matches: 70, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
14 6 0.09
17 31 0.44
18 16 0.23
19 17 0.24
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:77694155 original size:73 final size:71
Alignment explanation
Indices: 77694067--77694219 Score: 220
Period size: 73 Copynumber: 2.1 Consensus size: 71
77694057 ATTACAAAAT
* *
77694067 CATATC-TTCTAAGATTGCATATTATATCTAAGTTTGCAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTG-AATCATATCTAAGATTGATATCATATC
*
77694130 TAAGATTG
64 TAAGATTA
*
77694138 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGAATCATATCTAAGATTG-ATATCATATC
77694203 TAAGATTA
64 TAAGATTA
77694211 CATATCATT
1 CATATCATT
77694220 GAAGATTATA
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
71 22 0.30
72 16 0.22
73 36 0.49
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGAATCATATCTAAGATTGATATCATATCTA
AGATTA
Found at i:77697539 original size:6 final size:6
Alignment explanation
Indices: 77697528--77697560 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
77697518 ATTGAGTGAG
77697528 TTTTTC TTTTTC TTTTT- TTTTTC TTTTT- TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
77697561 TACAGCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (6 bp):
TTTTTC
Found at i:77697548 original size:11 final size:11
Alignment explanation
Indices: 77697528--77697560 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
77697518 ATTGAGTGAG
77697528 TTTTTCTTTTTC
1 TTTTT-TTTTTC
77697540 TTTTTTTTTTC
1 TTTTTTTTTTC
77697551 TTTTTTTTTT
1 TTTTTTTTTT
77697561 TACAGCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:77697550 original size:17 final size:16
Alignment explanation
Indices: 77697528--77697561 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
77697518 ATTGAGTGAG
77697528 TTTTTCTTTTTCTTTTT
1 TTTTTCTTTTT-TTTTT
77697545 TTTTTCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
77697561 T
1 T
77697562 ACAGCAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTT
Found at i:77701619 original size:20 final size:21
Alignment explanation
Indices: 77701568--77701633 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
77701558 TTGTATTAGT
** *
77701568 TTACTAAATTAAATTATAAATA
1 TTACTAAATTCTA-TATAAAAA
77701590 TTACTAAATT-TATCATAAAAA
1 TTACTAAATTCTAT-ATAAAAA
*
77701611 TTA-TAAATTCTATAAAAAAA
1 TTACTAAATTCTATATAAAAA
77701631 TTA
1 TTA
77701634 AATTTAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
20 16 0.41
21 13 0.33
22 10 0.26
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (21 bp):
TTACTAAATTCTATATAAAAA
Found at i:77705238 original size:17 final size:20
Alignment explanation
Indices: 77705212--77705266 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 20
77705202 GAATGGTTAA
77705212 TAGATAATTGAAGTGAATA-
1 TAGATAATTGAAGTGAATAT
*
77705231 T-GAT-ATTG-AGTTGATTAT
1 TAGATAATTGAAG-TGAATAT
77705249 TAGATAATTGAAGTGAAT
1 TAGATAATTGAAGTGAAT
77705267 GTTGAGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 2 0.07
17 9 0.31
18 4 0.14
19 4 0.14
20 8 0.28
21 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (20 bp):
TAGATAATTGAAGTGAATAT
Found at i:77708845 original size:27 final size:27
Alignment explanation
Indices: 77708781--77708845 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
77708771 CCTTAATCGA
* * * *
77708781 TAAAATGACTATTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTACCCTTATATGG
*
77708808 TAAAATAACTGTTTTACCCTTATATGG
1 TAAAATGACTGTTTTACCCTTATATGG
77708835 TAAAATGACTG
1 TAAAATGACTG
77708846 AAATGCCCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTACCCTTATATGG
Found at i:77709221 original size:18 final size:18
Alignment explanation
Indices: 77709198--77709232 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
77709188 GGACTTGCAT
77709198 ACTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
*
77709216 ACTGTTTGCTGTTACTG
1 ACTGTTTACTGTTACTG
77709233 TAATAGGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:77710739 original size:12 final size:12
Alignment explanation
Indices: 77710724--77710749 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77710714 ATCATCATCT
77710724 TCATCAGATTCA
1 TCATCAGATTCA
77710736 TCATCAGATTCA
1 TCATCAGATTCA
77710748 TC
1 TC
77710750 CCTTAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:77712432 original size:9 final size:9
Alignment explanation
Indices: 77712419--77712513 Score: 100
Period size: 9 Copynumber: 10.6 Consensus size: 9
77712409 TTTATGTCAG
77712419 TTATGTAAA
1 TTATGTAAA
* *
77712428 ATATGTAAG
1 TTATGTAAA
*
77712437 TTATGAAAA
1 TTATGTAAA
* *
77712446 TGATGTAAG
1 TTATGTAAA
77712455 TTATGTAAA
1 TTATGTAAA
*
77712464 TTCTGTAAA
1 TTATGTAAA
*
77712473 TTATGTAAG
1 TTATGTAAA
*
77712482 TTGTGTAAA
1 TTATGTAAA
*
77712491 TTATGTAAG
1 TTATGTAAA
*
77712500 TTATGTAAG
1 TTATGTAAA
77712509 TTATG
1 TTATG
77712514 ACATTTATGA
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 69 1.00
ACGTcount: A:0.38, C:0.01, G:0.19, T:0.42
Consensus pattern (9 bp):
TTATGTAAA
Found at i:77712438 original size:18 final size:18
Alignment explanation
Indices: 77712410--77712628 Score: 133
Period size: 18 Copynumber: 12.3 Consensus size: 18
77712400 TGATATTTAT
*
77712410 TTATGTCAGTTATGTAAA
1 TTATGTAAGTTATGTAAA
* *
77712428 ATATGTAAGTTATGAAAA
1 TTATGTAAGTTATGTAAA
*
77712446 TGATGTAAGTTATGTAAA
1 TTATGTAAGTTATGTAAA
* * *
77712464 TTCTGTAAATTATGTAAG
1 TTATGTAAGTTATGTAAA
* * *
77712482 TTGTGTAAATTATGTAAG
1 TTATGTAAGTTATGTAAA
*
77712500 TTATGTAAGTTATG-ACAT
1 TTATGTAAGTTATGTA-AA
* * * *
77712518 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATGTAAA
*
77712536 TTATGT-A-TTATGTAAG
1 TTATGTAAGTTATGTAAA
*
77712552 TTATGTAAGTTATG-ATA
1 TTATGTAAGTTATGTAAA
* * * * *
77712569 TGATATATATTTATATAAG
1 TTATGTA-AGTTATGTAAA
**
77712588 TTATGTAAGTTATGTATG
1 TTATGTAAGTTATGTAAA
* * *
77712606 TTATGTGAGGTATGTAAG
1 TTATGTAAGTTATGTAAA
77712624 TTATG
1 TTATG
77712629 ATATGATATA
Statistics
Matches: 156, Mismatches: 37, Indels: 16
0.75 0.18 0.08
Matches are distributed among these distances:
15 4 0.03
16 7 0.04
17 9 0.06
18 124 0.79
19 12 0.08
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (18 bp):
TTATGTAAGTTATGTAAA
Found at i:77712497 original size:27 final size:27
Alignment explanation
Indices: 77712411--77712611 Score: 106
Period size: 27 Copynumber: 7.5 Consensus size: 27
77712401 GATATTTATT
* * *
77712411 TATGTCAGTTATGTAAAATATGTAAGT
1 TATGTAAGTTATGTAAATTATGTAAAT
* * * *
77712438 TATGAAAATGATGTAAGTTATGTAAAT
1 TATGTAAGTTATGTAAATTATGTAAAT
* * * *
77712465 TCTGTAAATTATGTAAGTTGTGTAAAT
1 TATGTAAGTTATGTAAATTATGTAAAT
* *
77712492 TATGTAAGTTATGTAAGTTATG-ACATT
1 TATGTAAGTTATGTAAATTATGTA-AAT
* * * *
77712519 TATGATATGATATAT-ATTTATGT--AT
1 TATG-TAAGTTATGTAAATTATGTAAAT
* *
77712544 TATGTAAGTTATGTAAGTTATG-ATAT
1 TATGTAAGTTATGTAAATTATGTAAAT
* * * * * *
77712570 GATATATATTTATATAAGTTATGTAAGT
1 TATGTA-AGTTATGTAAATTATGTAAAT
*
77712598 TATGTATGTTATGT
1 TATGTAAGTTATGT
77712612 GAGGTATGTA
Statistics
Matches: 131, Mismatches: 35, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
24 7 0.05
25 11 0.08
26 7 0.05
27 93 0.71
28 13 0.10
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.45
Consensus pattern (27 bp):
TATGTAAGTTATGTAAATTATGTAAAT
Found at i:77712554 original size:43 final size:45
Alignment explanation
Indices: 77712491--77712610 Score: 183
Period size: 43 Copynumber: 2.7 Consensus size: 45
77712481 GTTGTGTAAA
*
77712491 TTATGTAAGTTATGTAAGTTATG-ACATTTATGATATGATATATAT
1 TTATGTAAGTTATGTAAGTTATGTA-AGTTATGATATGATATATAT
77712536 TTATGT-A-TTATGTAAGTTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATATAT
* *
77712579 TTATATAAGTTATGTAAGTTATGTATGTTATG
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATG
77712611 TGAGGTATGT
Statistics
Matches: 69, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
43 38 0.55
44 3 0.04
45 28 0.41
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.48
Consensus pattern (45 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATATAT
Found at i:77712557 original size:9 final size:9
Alignment explanation
Indices: 77712543--77712628 Score: 84
Period size: 9 Copynumber: 9.6 Consensus size: 9
77712533 TATTTATGTA
77712543 TTATGTAAG
1 TTATGTAAG
77712552 TTATGTAAG
1 TTATGTAAG
*
77712561 TTATGATATG
1 TTATG-TAAG
* * *
77712571 ATATAT-AT
1 TTATGTAAG
*
77712579 TTATATAAG
1 TTATGTAAG
77712588 TTATGTAAG
1 TTATGTAAG
*
77712597 TTATGTATG
1 TTATGTAAG
*
77712606 TTATGTGAG
1 TTATGTAAG
*
77712615 GTATGTAAG
1 TTATGTAAG
77712624 TTATG
1 TTATG
77712629 ATATGATATA
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
8 5 0.08
9 50 0.82
10 6 0.10
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:77712624 original size:36 final size:35
Alignment explanation
Indices: 77712410--77712628 Score: 147
Period size: 36 Copynumber: 6.1 Consensus size: 35
77712400 TGATATTTAT
* *** * *
77712410 TTATGTCAGTTATGTAAAATATGTAAGTTATGAAAA
1 TTATGTAAGTTATGTATGTTATGT-AGTTATGTAAG
* ** * *
77712446 TGATGTAAGTTATGTAAATTCTGTAAATTATGTAAG
1 TTATGTAAGTTATGTATGTTATGT-AGTTATGTAAG
* * * *
77712482 TTGTGTAAATTATGTAAGTTATGTAAGTTATG-ACAT
1 TTATGTAAGTTATGTATGTTATGT-AGTTATGTA-AG
* * *
77712518 TTATGATATGATATATAT-TTATGTA-TTATGTAAG
1 TTATG-TAAGTTATGTATGTTATGTAGTTATGTAAG
* * * *
77712552 TTATGTAAGTTATGATATGATATATATTTATATAAG
1 TTATGTAAGTTATG-TATGTTATGTAGTTATGTAAG
*
77712588 TTATGTAAGTTATGTATGTTATGTGAGGTATGTAAG
1 TTATGTAAGTTATGTATGTTATGT-AGTTATGTAAG
77712624 TTATG
1 TTATG
77712629 ATATGATATA
Statistics
Matches: 144, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
33 6 0.04
34 14 0.10
35 16 0.11
36 101 0.70
37 7 0.05
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (35 bp):
TTATGTAAGTTATGTATGTTATGTAGTTATGTAAG
Found at i:77713265 original size:23 final size:23
Alignment explanation
Indices: 77713239--77713283 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
77713229 TTATATTAAA
*
77713239 ATTAAAAATAAAATATAAATATG
1 ATTAAAAATAAAAAATAAATATG
*
77713262 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAAAATAAATAT
77713284 TTAGTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
ATTAAAAATAAAAAATAAATATG
Found at i:77713268 original size:29 final size:27
Alignment explanation
Indices: 77713221--77713275 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
77713211 AAATATAATA
* *
77713221 AAAATTAATTATATTAAAATTAAAAAT
1 AAAATTAAATATATTAAAAATAAAAAT
77713248 AAAATATAAATATGATTAAAAATAAAAA
1 AAAAT-TAAATAT-ATTAAAAATAAAAA
77713276 ATATATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 6 0.25
29 13 0.54
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAATTAAATATATTAAAAATAAAAAT
Found at i:77716134 original size:30 final size:30
Alignment explanation
Indices: 77716100--77716157 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
77716090 TAAAGCCTAA
* *
77716100 ACCCTAGATCCTAAACTCTAAATTATATGT
1 ACCCTAAATCCTAAACTCTAAAATATATGT
*
77716130 ACCCTAAATCTTAAACTCTAAAATATAT
1 ACCCTAAATCCTAAACTCTAAAATATAT
77716158 ATCTTAGCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.33
Consensus pattern (30 bp):
ACCCTAAATCCTAAACTCTAAAATATATGT
Found at i:77716631 original size:39 final size:39
Alignment explanation
Indices: 77716588--77716715 Score: 116
Period size: 41 Copynumber: 3.2 Consensus size: 39
77716578 TATAGCTTTA
77716588 AACTTTTACGGTGTTTTCCTATTAGTGCCACTAATGTAT
1 AACTTTTACGGTGTTTTCCTATTAGTGCCACTAATGTAT
* * * ** * *
77716627 AACTTTTGCGGCTTTTTTTACC-ATAAACGCCGCT-ATAGCTTT
1 AACTTTTACGG--TGTTTT-CCTATTAGTGCCACTAAT-G-TAT
*
77716669 AAACTTTTACGGTGTTTTCCTATTAGTGCCACTAATGTAC
1 -AACTTTTACGGTGTTTTCCTATTAGTGCCACTAATGTAT
77716709 AACTTTT
1 AACTTTT
77716716 GCGGCTTTTT
Statistics
Matches: 66, Mismatches: 15, Indels: 16
0.68 0.15 0.16
Matches are distributed among these distances:
39 17 0.26
40 5 0.08
41 28 0.42
42 6 0.09
43 10 0.15
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.42
Consensus pattern (39 bp):
AACTTTTACGGTGTTTTCCTATTAGTGCCACTAATGTAT
Found at i:77716649 original size:82 final size:82
Alignment explanation
Indices: 77716548--77716727 Score: 335
Period size: 82 Copynumber: 2.2 Consensus size: 82
77716538 AATGCTTGCC
*
77716548 CTTTTGCGGC-ATTTTTACCATAAACGCCGCTATAGCTTTAAACTTTTACGGTGTTTTCCTATTA
1 CTTTTGCGGCTTTTTTTACCATAAACGCCGCTATAGCTTTAAACTTTTACGGTGTTTTCCTATTA
*
77716612 GTGCCACTAATGTATAA
66 GTGCCACTAATGTACAA
77716629 CTTTTGCGGCTTTTTTTACCATAAACGCCGCTATAGCTTTAAACTTTTACGGTGTTTTCCTATTA
1 CTTTTGCGGCTTTTTTTACCATAAACGCCGCTATAGCTTTAAACTTTTACGGTGTTTTCCTATTA
77716694 GTGCCACTAATGTACAA
66 GTGCCACTAATGTACAA
77716711 CTTTTGCGGCTTTTTTT
1 CTTTTGCGGCTTTTTTT
77716728 TCCTAAGCGC
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
81 10 0.10
82 86 0.90
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (82 bp):
CTTTTGCGGCTTTTTTTACCATAAACGCCGCTATAGCTTTAAACTTTTACGGTGTTTTCCTATTA
GTGCCACTAATGTACAA
Found at i:77722247 original size:22 final size:21
Alignment explanation
Indices: 77722198--77722252 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
77722188 GATGAAAAAA
*
77722198 AAATGTATATAATATGGTATT
1 AAATGTATATAATATAGTATT
*
77722219 AATATGTGTATAATATAGTATTT
1 AA-ATGTATATAATATAGTA-TT
77722242 AAATGTATATA
1 AAATGTATATA
77722253 CATAATGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 23 0.79
23 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (21 bp):
AAATGTATATAATATAGTATT
Found at i:77724425 original size:35 final size:34
Alignment explanation
Indices: 77724386--77724509 Score: 96
Period size: 35 Copynumber: 3.5 Consensus size: 34
77724376 GAATTGGTTC
77724386 AATTTAATTCCTTTAATTTGAAGTTTTAAAATTGT
1 AATTTAATT-CTTTAATTTGAAGTTTTAAAATTGT
* *
77724421 AATTTTAGTAT-TTTAATTTGGTCAA-TTTT--AATTCT
1 AA-TTTAAT-TCTTTAATTT-G--AAGTTTTAAAATTGT
*
77724456 TATTTAATTCTTGTAATTTGAAGTTTTAAAATTGT
1 AATTTAATTCTT-TAATTTGAAGTTTTAAAATTGT
*
77724491 AGTCTTAATAT-TTTAATTT
1 AAT-TTAAT-TCTTTAATTT
77724510 AGTCAATTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 24
0.69 0.07 0.24
Matches are distributed among these distances:
32 2 0.03
33 5 0.07
34 8 0.11
35 34 0.49
36 13 0.19
37 6 0.09
38 2 0.03
ACGTcount: A:0.31, C:0.05, G:0.09, T:0.55
Consensus pattern (34 bp):
AATTTAATTCTTTAATTTGAAGTTTTAAAATTGT
Found at i:77724473 original size:70 final size:70
Alignment explanation
Indices: 77724387--77724520 Score: 216
Period size: 70 Copynumber: 1.9 Consensus size: 70
77724377 AATTGGTTCA
* * *
77724387 ATTTAATTCCTTTAATTTGAAGTTTTAAAATTGTAATTTTAGTATTTTAATTTGGTCAATTTTAA
1 ATTTAATTCCTTTAATTTGAAGTTTTAAAATTGTAATCTTAATATTTTAATTTAGTCAATTTTAA
77724452 TTCTT
66 TTCTT
*
77724457 ATTTAATT-CTTGTAATTTGAAGTTTTAAAATTGTAGTCTTAATATTTTAATTTAGTCAATTTTA
1 ATTTAATTCCTT-TAATTTGAAGTTTTAAAATTGTAATCTTAATATTTTAATTTAGTCAATTTTA
77724521 GTTTCTATAC
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 3 0.05
70 56 0.95
ACGTcount: A:0.31, C:0.05, G:0.09, T:0.54
Consensus pattern (70 bp):
ATTTAATTCCTTTAATTTGAAGTTTTAAAATTGTAATCTTAATATTTTAATTTAGTCAATTTTAA
TTCTT
Found at i:77730282 original size:20 final size:20
Alignment explanation
Indices: 77730259--77730308 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
77730249 AAATCTAAAT
* *
77730259 TAAAATATTGAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
*
77730279 TAAAATCCTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
77730299 TAAGAATACT
1 TAA-AATACT
77730309 GATATGGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:77730791 original size:23 final size:22
Alignment explanation
Indices: 77730754--77730841 Score: 72
Period size: 23 Copynumber: 3.9 Consensus size: 22
77730744 TTTATTTATT
*
77730754 TTTTGAAATTA-ATTTTAAAAA
1 TTTTAAAATTATATTTTAAAAA
* * **
77730775 ATTTAAAATGTATATTTGAAATG
1 TTTTAAAAT-TATATTTTAAAAA
*
77730798 TTTTATAATATATATTTTTAAAAA
1 TTTTAAAAT-TATA-TTTTAAAAA
77730822 TTTTAAAAATTAT-TTTTAAA
1 TTTT-AAAATTATATTTTAAA
77730842 TTATTTTTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
21 7 0.14
22 9 0.18
23 18 0.35
24 13 0.25
25 4 0.08
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
TTTTAAAATTATATTTTAAAAA
Found at i:77730847 original size:33 final size:33
Alignment explanation
Indices: 77730809--77730879 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
77730799 TTTATAATAT
*
77730809 ATATTTTTAAAAATTTTAAAAATTA-TTTTTAAA
1 ATATTTTT-AAAAGTTTAAAAATTATTTTTTAAA
* * *
77730842 TTATTTTTAAAAGTTTGAATATTATTTTTTAAA
1 ATATTTTTAAAAGTTTAAAAATTATTTTTTAAA
77730875 ATATT
1 ATATT
77730880 AAATATATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (33 bp):
ATATTTTTAAAAGTTTAAAAATTATTTTTTAAA
Found at i:77730849 original size:12 final size:11
Alignment explanation
Indices: 77730810--77730852 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
77730800 TTATAATATA
77730810 TATTTTTAAA-
1 TATTTTTAAAT
* *
77730820 AATTTTAAAAAT
1 TATTTT-TAAAT
77730832 TATTTTTAAAT
1 TATTTTTAAAT
77730843 TATTTTTAAA
1 TATTTTTAAA
77730853 AGTTTGAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 5 0.19
11 17 0.63
12 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATTTTTAAAT
Found at i:77730873 original size:22 final size:22
Alignment explanation
Indices: 77730841--77730909 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
77730831 TTATTTTTAA
*
77730841 ATTA-TTTTTAAAAGT-TTGAAT
1 ATTATTTTTTAAAA-TATTAAAT
77730862 ATTATTTTTTAAAATATTAAAT
1 ATTATTTTTTAAAATATTAAAT
*
77730884 A-TATTTTTTTAATAATATAAAAT
1 ATTA-TTTTTTAA-AATATTAAAT
77730907 ATT
1 ATT
77730910 TAAATATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
21 7 0.17
22 23 0.56
23 10 0.24
24 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (22 bp):
ATTATTTTTTAAAATATTAAAT
Found at i:77730900 original size:23 final size:22
Alignment explanation
Indices: 77730866--77730908 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
77730856 TTGAATATTA
*
77730866 TTTTTTAAAATATTAAATATAT
1 TTTTTTAAAATATAAAATATAT
77730888 TTTTTTAATAATATAAAATAT
1 TTTTTTAA-AATATAAAATAT
77730909 TTAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTTTAAAATATAAAATATAT
Found at i:77730977 original size:19 final size:20
Alignment explanation
Indices: 77730953--77730990 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
77730943 TTATTAGTTT
77730953 TTTAATATTTTA-AATATTA
1 TTTAATATTTTATAATATTA
*
77730972 TTTAATTTTTTATAATATT
1 TTTAATATTTTATAATATT
77730991 TTAAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAATATTTTATAATATTA
Found at i:77731008 original size:14 final size:15
Alignment explanation
Indices: 77730981--77731013 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
77730971 ATTTAATTTT
77730981 TTATAATATTTTAAA
1 TTATAATATTTTAAA
77730996 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
77731010 TTAT
1 TTAT
77731014 TTTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:77731026 original size:12 final size:12
Alignment explanation
Indices: 77730989--77731027 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
77730979 TTTTATAATA
77730989 TTTTAAATTATAAT
1 TTTTAAA-TAT-AT
77731003 TTTTAAAT-TAT
1 TTTTAAATATAT
77731014 TTTTAAATATAT
1 TTTTAAATATAT
77731026 TT
1 TT
77731028 GGCTTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.42
12 6 0.25
13 1 0.04
14 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTAAATATAT
Found at i:77731310 original size:15 final size:17
Alignment explanation
Indices: 77731290--77731325 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
77731280 ATTAAAAAAT
77731290 AAAAAA-TATTTGTTA-
1 AAAAAATTATTTGTTAC
77731305 AAAAAATTATTTGTTAC
1 AAAAAATTATTTGTTAC
77731322 AAAA
1 AAAA
77731326 TGAAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 9 0.47
17 4 0.21
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (17 bp):
AAAAAATTATTTGTTAC
Found at i:77731799 original size:29 final size:29
Alignment explanation
Indices: 77731784--77731840 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
77731774 AAAAATCATA
77731784 ATTTAAAATATTATAAAAAAATAAATAAT
1 ATTTAAAATATTATAAAAAAATAAATAAT
*
77731813 ATTTAAAATATTA-AAAATAAT-AATAAT
1 ATTTAAAATATTATAAAAAAATAAATAAT
77731840 A
1 A
77731841 AATTTGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 7 0.26
28 7 0.26
29 13 0.48
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
ATTTAAAATATTATAAAAAAATAAATAAT
Found at i:77731812 original size:27 final size:25
Alignment explanation
Indices: 77731774--77731839 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 25
77731764 AAAATAATTT
*
77731774 AAAAATCATAATTTAAAATATTATAA
1 AAAAATAATAATTTAAAATATTA-AA
77731800 AAAAATAAATAATATTTAAAATATTAAA
1 AAAAAT-AAT-A-ATTTAAAATATTAAA
*
77731828 AATAATAATAAT
1 AAAAATAATAAT
77731840 AAATTTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
25 2 0.06
26 7 0.20
27 5 0.14
28 8 0.23
29 13 0.37
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
AAAAATAATAATTTAAAATATTAAA
Found at i:77731831 original size:18 final size:19
Alignment explanation
Indices: 77731788--77731831 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
77731778 ATCATAATTT
77731788 AAAATATTATAAAAAAATA
1 AAAATATTATAAAAAAATA
* *
77731807 AATAATATT-TAAAATATTA
1 AA-AATATTATAAAAAAATA
77731826 AAAATA
1 AAAATA
77731832 ATAATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 12 0.55
20 6 0.27
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATATTATAAAAAAATA
Found at i:77731845 original size:29 final size:28
Alignment explanation
Indices: 77731783--77731850 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
77731773 TAAAAATCAT
*
77731783 AATTTAAAATATTATAAAAAAATAAATA
1 AATTTAAAATATTAAAAAAAAATAAATA
77731811 ATATTTAAAATATTAAAAATAATAAT-AATA
1 A-ATTTAAAATATTAAAAA-AA-AATAAATA
*
77731841 AATTTGAAAT
1 AATTTAAAAT
77731851 GTCATATCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 1 0.03
29 24 0.69
30 7 0.20
31 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (28 bp):
AATTTAAAATATTAAAAAAAAATAAATA
Found at i:77731922 original size:12 final size:14
Alignment explanation
Indices: 77731903--77731939 Score: 51
Period size: 12 Copynumber: 2.7 Consensus size: 14
77731893 TATATATTTA
77731903 ATATTTAAAAA-AT
1 ATATTTAAAAATAT
77731916 A-ATTTAAAAATAT
1 ATATTTAAAAATAT
77731929 ATATTATAAAA
1 ATATT-TAAAA
77731940 CATTTCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.43
13 4 0.19
14 3 0.14
15 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATTTAAAAATAT
Found at i:77731999 original size:13 final size:13
Alignment explanation
Indices: 77731983--77732007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77731973 TAATAACAAA
77731983 AAATAAAATAAAT
1 AAATAAAATAAAT
77731996 AAATAAAATAAA
1 AAATAAAATAAA
77732008 ATAAGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAAATAAAT
Found at i:77732005 original size:18 final size:19
Alignment explanation
Indices: 77731967--77732011 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
77731957 TCAAATTTTT
*
77731967 TAAAATTAATAACAAAAAA
1 TAAAATAAATAACAAAAAA
*
77731986 TAAAATAAATAA-ATAAAA
1 TAAAATAAATAACAAAAAA
77732004 TAAAATAA
1 TAAAATAA
77732012 GAAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (19 bp):
TAAAATAAATAACAAAAAA
Found at i:77732020 original size:24 final size:23
Alignment explanation
Indices: 77731968--77732042 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 23
77731958 CAAATTTTTT
*
77731968 AAAATTAATAACAA-AAAATAA-A
1 AAAAATAATAA-AATAAAATAAGA
*
77731990 ATAAATAAATAAAATAAAATAAGA
1 AAAAAT-AATAAAATAAAATAAGA
*
77732014 AAAAAT-ATAAAACTTAAAAAAAGA
1 AAAAATAATAAAA--TAAAATAAGA
77732038 AAAAA
1 AAAAA
77732043 ATTAAAGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
22 12 0.27
23 12 0.27
24 20 0.45
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (23 bp):
AAAAATAATAAAATAAAATAAGA
Found at i:77732025 original size:9 final size:8
Alignment explanation
Indices: 77731980--77732044 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 8
77731970 AATTAATAAC
77731980 AAAAAATA
1 AAAAAATA
77731988 AAATAAATA
1 AAA-AAATA
77731997 AATAAAATA
1 AA-AAAATA
* *
77732006 AAATAA-G
1 AAAAAATA
77732013 AAAAAATA
1 AAAAAATA
**
77732021 TAAAACTTA
1 -AAAAAATA
*
77732030 AAAAAAGA
1 AAAAAATA
77732038 AAAAAAT
1 AAAAAAT
77732045 TAAAGAAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
7 5 0.12
8 17 0.40
9 20 0.47
10 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (8 bp):
AAAAAATA
Found at i:77747210 original size:13 final size:13
Alignment explanation
Indices: 77747170--77747216 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
77747160 TTCTAATTTC
77747170 CTTTTTTTTCT-T
1 CTTTTTTTTCTCT
77747182 CTTTTTTTTCATTCT
1 CTTTTTTTTC--TCT
*
77747197 CTTTTATTTCTCT
1 CTTTTTTTTCTCT
77747210 CTATTTT
1 CT-TTTT
77747217 CCTCCCTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 10 0.34
13 5 0.17
14 4 0.14
15 10 0.34
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTTTTTTCTCT
Found at i:77749333 original size:7 final size:7
Alignment explanation
Indices: 77749321--77749354 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
77749311 TACTTTGGCT
77749321 ATTTTTA
1 ATTTTTA
77749328 ATTTTTA
1 ATTTTTA
77749335 ATTTTTAA
1 ATTTTT-A
*
77749343 AATTTTA
1 ATTTTTA
77749350 ATTTT
1 ATTTT
77749355 CACTTAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
ATTTTTA
Found at i:77749340 original size:14 final size:15
Alignment explanation
Indices: 77749321--77749354 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
77749311 TACTTTGGCT
*
77749321 ATTTTT-AATTTTTA
1 ATTTTTAAAATTTTA
77749335 ATTTTTAAAATTTTA
1 ATTTTTAAAATTTTA
77749350 ATTTT
1 ATTTT
77749355 CACTTAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTAAAATTTTA
Found at i:77750672 original size:3 final size:3
Alignment explanation
Indices: 77750664--77750703 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
77750654 TTTGCTTTGC
77750664 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
77750704 TCTCTTAAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:77753601 original size:14 final size:14
Alignment explanation
Indices: 77753582--77753612 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
77753572 TACAACCACC
*
77753582 TTAACTACTAATTG
1 TTAACTACTAACTG
77753596 TTAACTACTAACTG
1 TTAACTACTAACTG
77753610 TTA
1 TTA
77753613 TAACGGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (14 bp):
TTAACTACTAACTG
Found at i:77757548 original size:14 final size:14
Alignment explanation
Indices: 77757529--77757558 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77757519 CTTCCATTGC
77757529 TAACTACTAACTGT
1 TAACTACTAACTGT
77757543 TAACTACTAACTGT
1 TAACTACTAACTGT
77757557 TA
1 TA
77757559 TAATGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.37
Consensus pattern (14 bp):
TAACTACTAACTGT
Found at i:77768257 original size:18 final size:18
Alignment explanation
Indices: 77768231--77768265 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
77768221 TATATATTAA
77768231 CCAAGTACCCAACCCAAC
1 CCAAGTACCCAACCCAAC
*
77768249 CCAATTACCCAACCCAA
1 CCAAGTACCCAACCCAA
77768266 TCATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.49, G:0.03, T:0.09
Consensus pattern (18 bp):
CCAAGTACCCAACCCAAC
Found at i:77768258 original size:13 final size:13
Alignment explanation
Indices: 77768242--77768266 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77768232 CAAGTACCCA
77768242 ACCCAACCCAATT
1 ACCCAACCCAATT
77768255 ACCCAACCCAAT
1 ACCCAACCCAAT
77768267 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:77768332 original size:20 final size:20
Alignment explanation
Indices: 77768294--77768333 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77768284 CTTTAATAAA
**
77768294 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
*
77768314 TAAAAGTAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
77768334 ATATAATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:77768374 original size:18 final size:18
Alignment explanation
Indices: 77768351--77768400 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
77768341 TTTATACAAA
77768351 TAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTTGGG
* *
77768369 TAATTCGGGTAATTTGGT
1 TAATTCGGTTAATTTGGG
*
77768387 TAATTCGATTAATT
1 TAATTCGGTTAATT
77768401 CAGTTAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTTGGG
Found at i:77768399 original size:27 final size:27
Alignment explanation
Indices: 77768351--77768410 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
77768341 TTTATACAAA
* * * *
77768351 TAATTCGGTTAATTTGGGTAATTCGGG
1 TAATTTGGTTAATTCGAGTAATTCAGG
* *
77768378 TAATTTGGTTAATTCGATTAATTCAGT
1 TAATTTGGTTAATTCGAGTAATTCAGG
77768405 TAATTT
1 TAATTT
77768411 TATACTTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47
Consensus pattern (27 bp):
TAATTTGGTTAATTCGAGTAATTCAGG
Found at i:77770475 original size:3 final size:3
Alignment explanation
Indices: 77770469--77770499 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
77770459 TTTTACAATC
*
77770469 TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
77770500 ATCTGTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:77770724 original size:30 final size:31
Alignment explanation
Indices: 77770659--77770726 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
77770649 ACTATTAATC
* * *
77770659 AGTGACTATTTTGTCGGTTTTTTATAATGTT
1 AGTGACTATTTTGTCGATTTTTCATAAAGTT
*
77770690 AGTGACTATTTTGT-TATTTTTCA-AAAGTT
1 AGTGACTATTTTGTCGATTTTTCATAAAGTT
77770719 GAGTGACT
1 -AGTGACT
77770727 GAAATGAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.16
30 13 0.41
31 14 0.44
ACGTcount: A:0.24, C:0.07, G:0.19, T:0.50
Consensus pattern (31 bp):
AGTGACTATTTTGTCGATTTTTCATAAAGTT
Found at i:77773700 original size:42 final size:42
Alignment explanation
Indices: 77773633--77773725 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
77773623 AGCTGGAGGG
* * * * *
77773633 GGAGAAGCAACGAAGTTATTTGGGCCATCA-GCACCGACAGGA
1 GGAGGAGCAACCAAGGTATTCGGGCCATCACG-ACCGACAGAA
77773675 GGAGGAGCAACCAAGGTATTCGGGCCATCACGACCGACAGAA
1 GGAGGAGCAACCAAGGTATTCGGGCCATCACGACCGACAGAA
77773717 GGAGGAGCA
1 GGAGGAGCA
77773726 CGAGAAACCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.33, T:0.11
Consensus pattern (42 bp):
GGAGGAGCAACCAAGGTATTCGGGCCATCACGACCGACAGAA
Found at i:77778887 original size:23 final size:22
Alignment explanation
Indices: 77778855--77778900 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
77778845 TTAATTCTCT
*
77778855 ATTATCATTTACCATAAATTTCA
1 ATTATCATTT-CCATAAATATCA
* *
77778878 ATTATTATTTTCATAAATATCA
1 ATTATCATTTCCATAAATATCA
77778900 A
1 A
77778901 GTCATTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTATCATTTCCATAAATATCA
Found at i:77780470 original size:23 final size:23
Alignment explanation
Indices: 77780444--77780537 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
77780434 AAGTTAGAAG
77780444 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
77780467 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
77780490 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
77780513 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
77780536 AG
1 AG
77780538 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:77784975 original size:23 final size:23
Alignment explanation
Indices: 77784949--77785042 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
77784939 AAGTTAGAAG
77784949 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
77784972 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
77784995 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
77785018 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
77785041 AG
1 AG
77785043 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:77785932 original size:21 final size:21
Alignment explanation
Indices: 77785906--77785963 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
77785896 ACAACGAAAG
*
77785906 GAGGAGGAGGGGGAGGGGAAC
1 GAGGAGGAGGAGGAGGGGAAC
77785927 GAGGAGGAGGAGGAGGGGAAC
1 GAGGAGGAGGAGGAGGGGAAC
* * *
77785948 CACGACGAGGAGGAGG
1 GAGGAGGAGGAGGAGG
77785964 AGGAGGAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.60, T:0.00
Consensus pattern (21 bp):
GAGGAGGAGGAGGAGGGGAAC
Found at i:77791396 original size:591 final size:592
Alignment explanation
Indices: 77790274--77791434 Score: 1628
Period size: 591 Copynumber: 2.0 Consensus size: 592
77790264 TATAACAATG
* * * * * * * *
77790274 AACATAAAGGGTATCATTGTCTCACACGAGATGGTAAGGTTATTATGTCTCGTCATGTTATTTTT
1 AACATAAAGGGTACCACTATCTCACACCAGATGGTAAGGTCATTATATCACGTCATGTTACTTTT
* * * *
77790339 TATAAACGACAATTTTTGTTTGCTTCATCTACTATAGTCTCGGTTGATAATAGCCCGACAGTTTC
66 GATAAACGACAATTTTTATTCGCTTCATCTACTATAGTCTCAGTTGATAATAGCCCGACAGTTTC
* * * * *
77790404 TAGGTATATTCCTCTAGTTAATGCTAGTATTCCATGTTCTGTTGCCACAAGGGTAGGAACAGTAA
131 CAGGTATATTCCTCTAATTAAGGCTAGTATTCCATGTTCTATTGCCACAAGGGTAGGAACAATAA
* * * *
77790469 ATAATATACCATCTCAGCCTTGCTCTACTTCCGTTCTATCCATGTCAAGAGATCCTAGCTCTTCG
196 ATAATATACCATCTAAGCCTTGCTCTACTTCCGTCCCATCCATGTCAAGAGATCCTAGCCCTTCG
* * ** * * *
77790534 GTCACGTTAGAGACTACTCATGAGGGTCTTTGTCTCTCGGGTTCCATAGATGATGGTGGTTGTTC
261 GTCACATTAGAGACTACTCATGAGGGTCTTCGTCTCTCAAGTTCCACAGATGATGGTGGCTATTC
* * * *
77790599 TGCTAAGGGACCTGCTTCGGGTCTGTGTTACTCAGTTCCTAGACCTATTCTGACGGGTAACACTC
326 TACTAAGGGACCTGCTTCGAGTCTATGTTACTCAGTTCCTACACCTATTCTGACGGGTAACACTC
* *
77790664 ATAATATGGTAACTAGATCTAAGGCTGGGATTTTTAAACCCAATGCTCTAACGGCTAAGATTCTT
391 ATAATATGATAACTAGATCTAAGGCTGGGATTTTTAAACCCAAGGCTCTAACGGCTAAGATTCTT
* ** * * ***
77790729 AACTATGAATCACGTACAGTTGACGGGGCATTAGCTGATATAGAACGGAAGTGTGTTGTTCAAGC
456 AACTATGAACCACGTACAGTTGACGAAGCATTAGCTGATACAGAACGGAAGTATACCGTTCAAGC
*
77790794 AGAGTTTGATGCGCTTATGGCTAATTCCACTTGGAAACTTGTTCCTCTGCATATTTTTGGGATAT
521 AAAGTTTGATGCGCTTATGGCTAATTCCACTTGGAAACTTGTTCCTCTGCATATTTTTGGGATAT
77790859 AGCACCC
586 AGCACCC
*
77790866 AACATAAAGGGTACCACTATCTCACACCAGATGGTAAGGTCATTGTATCACGTCATGTTACTTTT
1 AACATAAAGGGTACCACTATCTCACACCAGATGGTAAGGTCATTATATCACGTCATGTTACTTTT
* * * ** *
77790931 GATGAACGTCGATTTTTATTCGCTTTGTCTACTGTAGTCTCAGTTGATAATAGCCCGACAGTTTC
66 GATAAACGACAATTTTTATTCGCTTCATCTACTATAGTCTCAGTTGATAATAGCCCGACAGTTTC
* * * *
77790996 CATGTATATTCCTCTAATTAAGGCTAGTGTTCCATGTTCTATTGGCACAAGGGTGGGAACAATAA
131 CAGGTATATTCCTCTAATTAAGGCTAGTATTCCATGTTCTATTGCCACAAGGGTAGGAACAATAA
* * *
77791061 ATAATATACCATCTAAGCCTTGCTCTACTTCCGTCCCATCTAT-TCAAGAGATCTTGGCCCTTCG
196 ATAATATACCATCTAAGCCTTGCTCTACTTCCGTCCCATCCATGTCAAGAGATCCTAGCCCTTCG
* *
77791125 GTCACATTAGAGACTACTTAT-AGGGATCTTCGTCTTTCAAGTTCCACAGATGATGGTGGCTATT
261 GTCACATTAGAGACTACTCATGAGGG-TCTTCGTCTCTCAAGTTCCACAGATGATGGTGGCTATT
* * * * *
77791189 CTACTTAGGGACTTGCCTT-GAGTCTATGTTCCTCGGTTCTTACACCTATTCTGACGGGTAACAC
325 CTACTAAGGGACCTG-CTTCGAGTCTATGTTACTCAGTTCCTACACCTATTCTGACGGGTAACAC
* * *
77791253 TTATAATATGATAACTAGATCTAAGGCTAGGG-TTTTTAAACCCAAGGCTCTAACGGTTGAGATT
389 TCATAATATGATAACTAGATCTAAGGCT-GGGATTTTTAAACCCAAGGCTCTAACGGCTAAGATT
* * * *
77791317 CTTGACTATGAACCACGTACAGTTGATGAAGCATTAGCTGATCCAGAATGGAAGTATACCGTTCA
453 CTTAACTATGAACCACGTACAGTTGACGAAGCATTAGCTGATACAGAACGGAAGTATACCGTTCA
77791382 AGCAAAGTTTGATGCGCTTATGGCTAATTCCACTTGGAAACTTGTTCCTCTGC
518 AGCAAAGTTTGATGCGCTTATGGCTAATTCCACTTGGAAACTTGTTCCTCTGC
77791435 CCCATGGTCG
Statistics
Matches: 495, Mismatches: 71, Indels: 7
0.86 0.12 0.01
Matches are distributed among these distances:
590 4 0.01
591 279 0.56
592 212 0.43
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (592 bp):
AACATAAAGGGTACCACTATCTCACACCAGATGGTAAGGTCATTATATCACGTCATGTTACTTTT
GATAAACGACAATTTTTATTCGCTTCATCTACTATAGTCTCAGTTGATAATAGCCCGACAGTTTC
CAGGTATATTCCTCTAATTAAGGCTAGTATTCCATGTTCTATTGCCACAAGGGTAGGAACAATAA
ATAATATACCATCTAAGCCTTGCTCTACTTCCGTCCCATCCATGTCAAGAGATCCTAGCCCTTCG
GTCACATTAGAGACTACTCATGAGGGTCTTCGTCTCTCAAGTTCCACAGATGATGGTGGCTATTC
TACTAAGGGACCTGCTTCGAGTCTATGTTACTCAGTTCCTACACCTATTCTGACGGGTAACACTC
ATAATATGATAACTAGATCTAAGGCTGGGATTTTTAAACCCAAGGCTCTAACGGCTAAGATTCTT
AACTATGAACCACGTACAGTTGACGAAGCATTAGCTGATACAGAACGGAAGTATACCGTTCAAGC
AAAGTTTGATGCGCTTATGGCTAATTCCACTTGGAAACTTGTTCCTCTGCATATTTTTGGGATAT
AGCACCC
Found at i:77805438 original size:42 final size:42
Alignment explanation
Indices: 77805379--77805460 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
77805369 CATAGCGAGC
*
77805379 TGTTCTTGATCCCGAATTTGAAGCCTCTGTAATTCTTGTAGA
1 TGTTCTTGATCCCGAATTTGAAGCCTCTGCAATTCTTGTAGA
77805421 TGTTCTTGATCCCGAATTTGAAGCCTCTGCAATTCTTGTA
1 TGTTCTTGATCCCGAATTTGAAGCCTCTGCAATTCTTGTA
77805461 TCTGTCTTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (42 bp):
TGTTCTTGATCCCGAATTTGAAGCCTCTGCAATTCTTGTAGA
Found at i:77807943 original size:29 final size:29
Alignment explanation
Indices: 77807899--77807963 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
77807889 TAGGGGCCCT
77807899 AACCCCCTAAAGAGGATAATTATGCTTTA
1 AACCCCCTAAAGAGGATAATTATGCTTTA
* *
77807928 ACCCCCCTAAATAGGATAATTATGCTTTA
1 AACCCCCTAAAGAGGATAATTATGCTTTA
77807957 AACCCCC
1 AACCCCC
77807964 ACAAATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (29 bp):
AACCCCCTAAAGAGGATAATTATGCTTTA
Found at i:77812152 original size:16 final size:16
Alignment explanation
Indices: 77812127--77812168 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
77812117 TATATAATAT
*
77812127 AATAAT-AAACTAATG
1 AATAATAAAACAAATG
*
77812142 TATAATAAAACAAATG
1 AATAATAAAACAAATG
77812158 AATAAGTAAAA
1 AATAA-TAAAA
77812169 GAAAAAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 5 0.23
16 12 0.55
17 5 0.23
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (16 bp):
AATAATAAAACAAATG
Found at i:77812207 original size:9 final size:9
Alignment explanation
Indices: 77812166--77812235 Score: 56
Period size: 9 Copynumber: 7.8 Consensus size: 9
77812156 TGAATAAGTA
77812166 AAAGAAAAAG
1 AAAG-AAAAG
77812176 AAAGATAAA-
1 AAAGA-AAAG
*
77812185 AACGAAACAG
1 AAAGAAA-AG
*
77812195 AAAGGAAAG
1 AAAGAAAAG
77812204 AAAGAAAAG
1 AAAGAAAAG
**
77812213 AAA-AAGGG
1 AAAGAAAAG
77812221 AAAGAAAAG
1 AAAGAAAAG
77812230 -AAGAAA
1 AAAGAAA
77812236 GAAGAAGACG
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
8 14 0.29
9 22 0.46
10 12 0.25
ACGTcount: A:0.73, C:0.03, G:0.23, T:0.01
Consensus pattern (9 bp):
AAAGAAAAG
Found at i:77812225 original size:17 final size:18
Alignment explanation
Indices: 77812203--77812236 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77812193 AGAAAGGAAA
77812203 GAAAGAAAAGAA-AAAGG
1 GAAAGAAAAGAAGAAAGG
77812220 GAAAGAAAAGAAGAAAG
1 GAAAGAAAAGAAGAAAG
77812237 AAGAAGACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
GAAAGAAAAGAAGAAAGG
Found at i:77813699 original size:17 final size:17
Alignment explanation
Indices: 77813677--77813712 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
77813667 CAATCCCGAA
77813677 CTCAAATGTGGTAATGT
1 CTCAAATGTGGTAATGT
77813694 CTCAAATGTGGTAATGT
1 CTCAAATGTGGTAATGT
77813711 CT
1 CT
77813713 ATCTTTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (17 bp):
CTCAAATGTGGTAATGT
Found at i:77815926 original size:18 final size:20
Alignment explanation
Indices: 77815886--77815936 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
77815876 AAAATTAGAA
*
77815886 AAAAGTTCAAAATAATTT-T
1 AAAATTTCAAAATAATTTAT
*
77815905 TAAATTTCAAAAT-ATTTAT
1 AAAATTTCAAAATAATTTAT
77815924 AAAATTTCAAAAT
1 AAAATTTCAAAAT
77815937 TTATATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAATTTCAAAATAATTTAT
Found at i:77817914 original size:17 final size:17
Alignment explanation
Indices: 77817891--77818002 Score: 73
Period size: 19 Copynumber: 6.1 Consensus size: 17
77817881 ATAAAAAATT
77817891 ATAAAAAAATTA-AAAA
1 ATAAAAAAATTATAAAA
*
77817907 ATAGAAAAATTTATAAAA
1 ATA-AAAAAATTATAAAA
77817925 ATAAAAAAATTATTAAATA
1 ATAAAAAAATTA-TAAA-A
* *
77817944 TTAAAAATATATATGAAAA
1 ATAAAAAAAT-TAT-AAAA
* * *
77817963 TTGATATAAACTTATAAAA
1 AT-A-AAAAAATTATAAAA
77817982 ATTATAAAAAATTCATAAAA
1 A-TA-AAAAAATT-ATAAAA
77818002 A
1 A
77818003 CTTAAACTAG
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.04
17 16 0.21
18 11 0.14
19 25 0.33
20 17 0.22
21 4 0.05
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (17 bp):
ATAAAAAAATTATAAAA
Found at i:77817925 original size:11 final size:10
Alignment explanation
Indices: 77817881--77818002 Score: 80
Period size: 9 Copynumber: 12.7 Consensus size: 10
77817871 AAATGATTTC
77817881 ATAAAAAATT
1 ATAAAAAATT
*
77817891 ATAAAAAAAT
1 ATAAAAAATT
77817901 -TAAAAAA-T
1 ATAAAAAATT
* *
77817909 AGAAAAATTT
1 ATAAAAAATT
77817919 AT-AAAAA-T
1 ATAAAAAATT
77817927 A-AAAAAATT
1 ATAAAAAATT
* *
77817936 ATTAAATATT
1 ATAAAAAATT
*
77817946 A-AAAATA-T
1 ATAAAAAATT
*
77817954 ATATGAAAATT
1 ATA-AAAAATT
* *
77817965 GATATAAACTT
1 -ATAAAAAATT
77817976 AT-AAAAATT
1 ATAAAAAATT
77817985 ATAAAAAATT
1 ATAAAAAATT
77817995 CATAAAAA
1 -ATAAAAA
77818003 CTTAAACTAG
Statistics
Matches: 87, Mismatches: 14, Indels: 21
0.71 0.11 0.17
Matches are distributed among these distances:
8 10 0.11
9 31 0.36
10 30 0.34
11 13 0.15
12 3 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:77817988 original size:9 final size:9
Alignment explanation
Indices: 77817884--77818002 Score: 75
Period size: 10 Copynumber: 12.6 Consensus size: 9
77817874 TGATTTCATA
77817884 AAAAATTAT
1 AAAAATTAT
77817893 AAAAAAATTA-
1 --AAAAATTAT
*
77817903 AAAAA-TAG
1 AAAAATTAT
77817911 AAAAATTTAT
1 AAAAA-TTAT
*
77817921 AAAAA-TAA
1 AAAAATTAT
77817929 AAAAATTATT
1 AAAAATTA-T
*
77817939 AAATATTA-
1 AAAAATTAT
77817947 AAAATATATAT
1 AAAA-AT-TAT
*
77817958 GAAAATTGAT
1 AAAAATT-AT
*
77817968 ATAAACTTAT
1 A-AAAATTAT
77817978 AAAAATTAT
1 AAAAATTAT
77817987 AAAAAATTCAT
1 -AAAAATT-AT
77817998 AAAAA
1 AAAAA
77818003 CTTAAACTAG
Statistics
Matches: 87, Mismatches: 9, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
7 2 0.02
8 20 0.23
9 12 0.14
10 35 0.40
11 18 0.21
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:77818400 original size:9 final size:9
Alignment explanation
Indices: 77818388--77818457 Score: 56
Period size: 9 Copynumber: 7.7 Consensus size: 9
77818378 TTTTCTTATT
77818388 TTTTTATAA
1 TTTTTATAA
77818397 TTTTTATAA
1 TTTTTATAA
77818406 -TTTTAT-A
1 TTTTTATAA
77818413 TCGTTTT-TAA
1 T--TTTTATAA
* *
77818423 TATTTAATAT
1 T-TTTTATAA
77818433 TTTTTATAA
1 TTTTTATAA
*
77818442 CTTTTTATTA
1 -TTTTTATAA
77818452 TTTTTA
1 TTTTTA
77818458 AAGAATTCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
7 1 0.02
8 6 0.12
9 25 0.51
10 17 0.35
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:77818534 original size:11 final size:10
Alignment explanation
Indices: 77818514--77818570 Score: 53
Period size: 11 Copynumber: 5.4 Consensus size: 10
77818504 GTTATAAAAC
77818514 TTTTTTTATA
1 TTTTTTTATA
77818524 TTTTATTTATA
1 TTTT-TTTATA
77818535 -TTTTTTATAA
1 TTTTTTTAT-A
*
77818545 TTTTTAATATA
1 TTTTT-TTATA
*
77818556 ATTTTTTATA
1 TTTTTTTATA
77818566 GTTTT
1 -TTTT
77818571 AATAATTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
9 5 0.13
10 12 0.32
11 18 0.47
12 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:77818538 original size:21 final size:21
Alignment explanation
Indices: 77818515--77818579 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
77818505 TTATAAAACT
*
77818515 TTTTTTATATTTTAT-TTATA
1 TTTTTTATATTTTATAATATA
77818535 TTTTTTATAATTTT-TAATATAA
1 TTTTTTAT-ATTTTATAATAT-A
*
77818557 TTTTTTATAGTTT-TAATA-A
1 TTTTTTATATTTTATAATATA
77818576 TTTT
1 TTTT
77818580 ATATCAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.12
20 9 0.22
21 17 0.43
22 9 0.22
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTTTTATATTTTATAATATA
Found at i:77818549 original size:22 final size:22
Alignment explanation
Indices: 77818534--77818591 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
77818524 TTTTATTTAT
77818534 ATTTTTTATAATTTTTAATATA
1 ATTTTTTATAATTTTTAATATA
*
77818556 ATTTTTTAT-AGTTTT-A-ATA
1 ATTTTTTATAATTTTTAATATA
*
77818575 ATTTTATATCAATTTTT
1 ATTTTTTAT-AATTTTT
77818592 TTCTTGTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 11 0.35
20 1 0.03
21 10 0.32
22 9 0.29
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
ATTTTTTATAATTTTTAATATA
Found at i:77818580 original size:30 final size:30
Alignment explanation
Indices: 77818514--77818592 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
77818504 GTTATAAAAC
* * * *
77818514 TTTTTTTATATTTTATTTATATTTTTTATAA
1 TTTTTATATAATTT-TTTATAGTTTTAATAA
77818545 TTTTTAATATAATTTTTTATAGTTTTAATAA
1 TTTTT-ATATAATTTTTTATAGTTTTAATAA
77818576 -TTTTATATCAATTTTTT
1 TTTTTATAT-AATTTTTT
77818593 TCTTGTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 4 0.10
30 12 0.29
31 19 0.45
32 7 0.17
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (30 bp):
TTTTTATATAATTTTTTATAGTTTTAATAA
Found at i:77818590 original size:11 final size:10
Alignment explanation
Indices: 77818387--77818590 Score: 61
Period size: 10 Copynumber: 20.4 Consensus size: 10
77818377 TTTTTCTTAT
*
77818387 TTTTTTATAA
1 TTTTATATAA
77818397 TTTT-TATAA
1 TTTTATATAA
*
77818406 TTTTATAT-C
1 TTTTATATAA
*
77818415 GTTT-T-TAA
1 TTTTATATAA
77818423 TATTTA-AT-A
1 T-TTTATATAA
*
77818432 TTTTTTATAA
1 TTTTATATAA
*
77818442 CTTTT-TATTAT
1 -TTTTATA-TAA
* *
77818453 TTTTAAAGAA
1 TTTTATATAA
*
77818463 TTCTA-ATACA
1 TTTTATATA-A
* *
77818473 TTTTTTAAAA
1 TTTTATATAA
*
77818483 TTTTAAATAA
1 TTTTATATAA
*
77818493 GTTTTAT-TAG
1 -TTTTATATAA
* *
77818503 TGTTATAAAA
1 TTTTATATAA
*
77818513 CTTTT-TTTATA
1 -TTTTATATA-A
*
77818524 TTTTATTTATA
1 TTTTATATA-A
*
77818535 TTTTTTATAA
1 TTTTATATAA
77818545 TTTTTAATATAA
1 -TTTT-ATATAA
* *
77818557 TTTTTTATAG
1 TTTTATATAA
77818567 TTTTA-ATAA
1 TTTTATATAA
77818576 TTTTATATCAA
1 TTTTATAT-AA
77818587 TTTT
1 TTTT
77818591 TTTCTTGTTT
Statistics
Matches: 141, Mismatches: 32, Indels: 41
0.66 0.15 0.19
Matches are distributed among these distances:
7 1 0.01
8 4 0.03
9 34 0.24
10 52 0.37
11 45 0.32
12 5 0.04
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (10 bp):
TTTTATATAA
Found at i:77818593 original size:31 final size:30
Alignment explanation
Indices: 77818515--77818613 Score: 85
Period size: 31 Copynumber: 3.2 Consensus size: 30
77818505 TTATAAAACT
* * *
77818515 TTTTTTAT-ATTTTATTTATATTTTTTATAA
1 TTTTATATAATTTT-TTTATAGTTTTAATAA
77818545 TTTTTAATATAA-TTTTTTATAGTTTTAATAA
1 -TTTT-ATATAATTTTTTTATAGTTTTAATAA
* * *
77818576 TTTTATATCAATTTTTTTCTTGTTTTTAATCA
1 TTTTATAT-AATTTTTTTATAG-TTTTAATAA
77818608 TTTTAT
1 TTTTAT
77818614 GAGAAAACTA
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
29 4 0.07
30 6 0.11
31 26 0.46
32 20 0.35
33 1 0.02
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (30 bp):
TTTTATATAATTTTTTTATAGTTTTAATAA
Found at i:77819723 original size:14 final size:16
Alignment explanation
Indices: 77819704--77819737 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
77819694 GGATATAGTA
77819704 AAATA-TTT-AAAAAT
1 AAATATTTTAAAAAAT
77819718 AAATATTTTAAAAAAT
1 AAATATTTTAAAAAAT
77819734 AAAT
1 AAAT
77819738 TATTAATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 3 0.17
16 10 0.56
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATTTTAAAAAAT
Found at i:77825827 original size:16 final size:17
Alignment explanation
Indices: 77825796--77825828 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77825786 AAAAAGAAAA
*
77825796 GAAATTGGGATTGAATT
1 GAAAATGGGATTGAATT
77825813 GAAAATGGG-TTGAATT
1 GAAAATGGGATTGAATT
77825829 AATGATAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (17 bp):
GAAAATGGGATTGAATT
Found at i:77827509 original size:22 final size:23
Alignment explanation
Indices: 77827471--77827513 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
77827461 GTATTAATAA
77827471 ATTAAAAAATTTATTGAAATTTC
1 ATTAAAAAATTTATTGAAATTTC
*
77827494 ATTAAATAA-TTATTGAAATT
1 ATTAAAAAATTTATTGAAATT
77827514 ATGGAGGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (23 bp):
ATTAAAAAATTTATTGAAATTTC
Found at i:77832066 original size:18 final size:18
Alignment explanation
Indices: 77832043--77832080 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
77832033 CAAAATAGTT
*
77832043 TATGCATATGTATGTATG
1 TATGCAAATGTATGTATG
77832061 TATGCAAATGTATGTATG
1 TATGCAAATGTATGTATG
77832079 TA
1 TA
77832081 GATAAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (18 bp):
TATGCAAATGTATGTATG
Found at i:77835880 original size:43 final size:43
Alignment explanation
Indices: 77835816--77835915 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
77835806 CTTCGGTTCA
* * *
77835816 TCCGATGATACAATGTATGTGCCAGTATAATTGCTTT-GGCTTG
1 TCCGATGATGCACTGTATGTGCCAATATAATTG-TTTCGGCTTG
* *
77835859 TCCGATGATGCACTGTGTGTGCCAATATAATTGTTTCGGCTTT
1 TCCGATGATGCACTGTATGTGCCAATATAATTGTTTCGGCTTG
77835902 TCCGATGATGCACT
1 TCCGATGATGCACT
77835916 ACGTGTGCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 3 0.06
43 48 0.94
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (43 bp):
TCCGATGATGCACTGTATGTGCCAATATAATTGTTTCGGCTTG
Done.