Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 242 of 253
Found at i:78211911 original size:15 final size:15
Alignment explanation
Indices: 78211883--78211926 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
78211873 AAATTGTTAT
*
78211883 TTTTTATAAAATATA
1 TTTTTATAATATATA
78211898 TTTTT-TAACTATAT-
1 TTTTTATAA-TATATA
78211912 TTTTTATAATATATA
1 TTTTTATAATATATA
78211927 AAAATTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTATAATATATA
Found at i:78211915 original size:14 final size:14
Alignment explanation
Indices: 78211880--78211925 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
78211870 CTGAAATTGT
78211880 TATTTTTTATAAAATA
1 TATTTTTTAT--AATA
*
78211896 TATTTTTTA-ACTA
1 TATTTTTTATAATA
78211909 TATTTTTTATAATA
1 TATTTTTTATAATA
78211923 TAT
1 TAT
78211926 AAAAATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 12 0.44
14 6 0.22
16 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTTTTTATAATA
Found at i:78221870 original size:23 final size:21
Alignment explanation
Indices: 78221844--78221884 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
78221834 AATTAAATTA
78221844 TATATATTATGATTTTAGTAT
1 TATATATTATGATTTTAGTAT
78221865 TATATATTATGATTTTAGTA
1 TATATATTATGATTTTAGTA
78221885 AATTCATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
TATATATTATGATTTTAGTAT
Found at i:78221931 original size:37 final size:37
Alignment explanation
Indices: 78221868--78222049 Score: 118
Period size: 38 Copynumber: 4.7 Consensus size: 37
78221858 TTAGTATTAT
* *
78221868 ATATTATG-ATTTTAGTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
78221905 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * ***
78221945 ATATTAATAATAATTATTTTAAATTATAT-TTTATATTATTA
1 ATATTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
* *
78221986 TATATTATG-ATTTTAGTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
78222024 ATATTAAGAATTTTATTAAATTATAT
1 ATATTAAGAATTTTATTAAATTATAT
78222050 TTAATAATAA
Statistics
Matches: 112, Mismatches: 20, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
37 27 0.24
38 34 0.30
39 7 0.06
40 14 0.12
41 3 0.03
42 13 0.12
43 13 0.12
44 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:78221992 original size:22 final size:23
Alignment explanation
Indices: 78221957--78222000 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
78221947 ATTAATAATA
*
78221957 ATTATTTTAAATTAT-ATTTTAT
1 ATTATTATAAATTATGATTTTAT
*
78221979 ATTATTATATATTATGATTTTA
1 ATTATTATAAATTATGATTTTA
78222001 GTAAATTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
ATTATTATAAATTATGATTTTAT
Found at i:78222037 original size:102 final size:101
Alignment explanation
Indices: 78221933--78222151 Score: 393
Period size: 102 Copynumber: 2.2 Consensus size: 101
78221923 AATTATATAT
* * *
78221933 TTTTATTAAATTATATTAATAATAATTATTTTAAATTATATTTTATATTATTATATATTATGATT
1 TTTTATTAAATTATATTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGATT
*
78221998 TTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTAATAAATTCATATAAGAATATTTAATATTAAGAA
78222034 TTTTATTAAATTATATTTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATA-TTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGAT
78222099 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
65 TTTAATAAATTCATATAAGAATATTTAATATTAAGAA
78222136 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
78222152 ATTTTAATTA
Statistics
Matches: 113, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
101 16 0.14
102 97 0.86
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (101 bp):
TTTTATTAAATTATATTAATAATAATAACTTTAAATTATATTTTATAGTATTATATATTATGATT
TTAATAAATTCATATAAGAATATTTAATATTAAGAA
Found at i:78222165 original size:14 final size:15
Alignment explanation
Indices: 78222139--78222178 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
78222129 TTAAGAATTT
*
78222139 TATTAAATT-ATATA
1 TATTTAATTAATATA
78222153 T-TTTAATTAATATA
1 TATTTAATTAATATA
78222167 TATTTAA-TAATA
1 TATTTAATTAATA
78222179 ATTATGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 12 0.52
15 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTAATTAATATA
Found at i:78222389 original size:44 final size:45
Alignment explanation
Indices: 78222326--78222422 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 45
78222316 CTATTACACC
*
78222326 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTAT
* * *
78222370 TCCATTACATTCAACCAAACAATTGAATTGCTATTACGTCTCTAT
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
78222415 TCCATTAC
1 TCCATTAC
78222423 GCCTCTATTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.49
45 23 0.49
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:78222423 original size:16 final size:16
Alignment explanation
Indices: 78222402--78222466 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
78222392 TTGAATTGCT
*
78222402 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
78222418 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
* *
78222434 ATGACACCTCTATTCC
1 ATTACGCCTCTATTCC
78222450 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
78222466 A
1 A
78222467 ATACAACGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.22, C:0.35, G:0.06, T:0.37
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:78230996 original size:6 final size:6
Alignment explanation
Indices: 78230985--78231026 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
78230975 AAGGCTGGCT
*
78230985 TTGTTC TTGTTC TTGTTC TTGTTGC ATTGTT- ATGTTC TTGTT
1 TTGTTC TTGTTC TTGTTC TTGTT-C -TTGTTC TTGTTC TTGTT
78231027 GTTTTACACT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 4 0.13
6 21 0.68
7 1 0.03
8 5 0.16
ACGTcount: A:0.05, C:0.12, G:0.19, T:0.64
Consensus pattern (6 bp):
TTGTTC
Found at i:78231825 original size:16 final size:16
Alignment explanation
Indices: 78231804--78231856 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
78231794 ATGTTGCGAA
78231804 TCAAATTCGAAAAT-AT
1 TCAAATTCG-AAATCAT
* *
78231820 TCAAATTCTAAATGAT
1 TCAAATTCGAAATCAT
*
78231836 TCGAATTCGAAATCAT
1 TCAAATTCGAAATCAT
78231852 TCAAA
1 TCAAA
78231857 CAAGTGACTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
15 4 0.13
16 27 0.87
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (16 bp):
TCAAATTCGAAATCAT
Found at i:78232850 original size:15 final size:15
Alignment explanation
Indices: 78232830--78232861 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
78232820 GCTCATATAT
*
78232830 ATATATTTATTGTAA
1 ATATATATATTGTAA
78232845 ATATATATATTGTAA
1 ATATATATATTGTAA
78232860 AT
1 AT
78232862 TCTAGAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (15 bp):
ATATATATATTGTAA
Found at i:78234331 original size:22 final size:23
Alignment explanation
Indices: 78234289--78234332 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
78234279 TAATTTAATA
*
78234289 ACTAATAATGTAATTACTGTTATC
1 ACTAATAA-GTAACTACTGTTATC
78234313 ACTAATAA-TAACTACTGTTA
1 ACTAATAAGTAACTACTGTTA
78234333 AAAATACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.39
Consensus pattern (23 bp):
ACTAATAAGTAACTACTGTTATC
Found at i:78241706 original size:3 final size:3
Alignment explanation
Indices: 78241698--78241903 Score: 50
Period size: 3 Copynumber: 67.3 Consensus size: 3
78241688 ATTGCTTTGG
* * * * *
78241698 TTA TTA TTA TTA TTT TTA TTA TT- TTG TTA ATA ATA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
78241745 -CA CTA -TA TT- TTA TCTA TTTA TTCA TT- TCA TTA TTAA TCCA TTA
1 TTA TTA TTA TTA TTA T-TA -TTA TT-A TTA TTA TTA TT-A T-TA TTA
* * * * *
78241788 -TA TTA TCA TTA CTA ATA -TA TTC TTA TTA TTT TTA TTAA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA
* * * * * * *
78241833 TTA TCA GTTGC TCTA CTTT TTA TTG CTA TTA TCA TTA CTA -TA TTTA
1 TTA TTA -TT-A T-TA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
78241879 TTA TTA TTA TTA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
78241904 ATAGTAGTGT
Statistics
Matches: 147, Mismatches: 36, Indels: 40
0.66 0.16 0.18
Matches are distributed among these distances:
2 14 0.10
3 109 0.74
4 20 0.14
5 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:78242222 original size:3 final size:3
Alignment explanation
Indices: 78242216--78242284 Score: 54
Period size: 3 Copynumber: 24.0 Consensus size: 3
78242206 TTATTTAATG
* * * * * *
78242216 TAT TAT TTT TAT TAC TAT CAA TAC TAT TAT TAT TA- TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
78242263 TAC TAT TA- TAT TAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
78242285 ATTTACCTAT
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
2 6 0.12
3 44 0.88
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:78250523 original size:24 final size:24
Alignment explanation
Indices: 78250483--78250528 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
78250473 TTGAAAGGGT
* *
78250483 TTTTAAATTTTTATTTTTATAAGG
1 TTTTAAATTATTATTTTAATAAGG
78250507 TTTTAAACTTATT-TTTTAATAA
1 TTTTAAA-TTATTATTTTAATAA
78250529 AAAATTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTTAAATTATTATTTTAATAAGG
Found at i:78253619 original size:14 final size:14
Alignment explanation
Indices: 78253597--78253633 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
78253587 AGTCAATTTC
78253597 TTTTT-CTTTTTTT
1 TTTTTACTTTTTTT
78253610 TTTTTAC-TTTTTT
1 TTTTTACTTTTTTT
*
78253623 GTTTTACTTTT
1 TTTTTACTTTT
78253634 GTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.05, C:0.08, G:0.03, T:0.84
Consensus pattern (14 bp):
TTTTTACTTTTTTT
Found at i:78253729 original size:13 final size:12
Alignment explanation
Indices: 78253684--78253758 Score: 54
Period size: 12 Copynumber: 6.4 Consensus size: 12
78253674 TAACTTTAAA
78253684 ATTTTGAAATA-T
1 ATTTT-AAATATT
*
78253696 ATTTGAAATATT
1 ATTTTAAATATT
78253708 -TTATT-AATATAT
1 ATT-TTAAATAT-T
78253720 ATTTTAAATATT
1 ATTTTAAATATT
*
78253732 ATTTTTTAA-A--
1 A-TTTTAAATATT
78253742 ATTTTAAATATT
1 ATTTTAAATATT
78253754 ATTTT
1 ATTTT
78253759 TTAAATTTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
9 6 0.12
10 2 0.04
11 12 0.24
12 17 0.34
13 13 0.26
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
ATTTTAAATATT
Found at i:78253733 original size:22 final size:21
Alignment explanation
Indices: 78253714--78253756 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
78253704 TATTTTATTA
78253714 ATATATATTTTAAATATTATT
1 ATATATATTTTAAATATTATT
* * *
78253735 TTTTAAAATTTTAAATATTATT
1 ATAT-ATATTTTAAATATTATT
78253757 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATATATATTTTAAATATTATT
Found at i:78253757 original size:22 final size:21
Alignment explanation
Indices: 78253722--78253799 Score: 97
Period size: 22 Copynumber: 3.7 Consensus size: 21
78253712 TAATATATAT
78253722 TTTAAATATTATTTTTTAAAA
1 TTTAAATATTATTTTTTAAAA
78253743 TTTTAAATATTATTTTTT-AAA
1 -TTTAAATATTATTTTTTAAAA
* *
78253764 TTT-ATTATTAGTTTTATAATAA
1 TTTAAATATTA-TTTTTTAA-AA
78253786 TTTAAATATTATTT
1 TTTAAATATTATTT
78253800 AATTTGTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
19 6 0.12
20 8 0.16
21 4 0.08
22 25 0.51
23 6 0.12
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (21 bp):
TTTAAATATTATTTTTTAAAA
Found at i:78253768 original size:13 final size:14
Alignment explanation
Indices: 78253704--78253769 Score: 51
Period size: 13 Copynumber: 5.3 Consensus size: 14
78253694 ATATTTGAAA
78253704 TATTTTATT-AATA-
1 TATTTT-TTAAATAT
*
78253717 TATATTTTAAATAT
1 TATTTTTTAAATAT
78253731 TATTTTTT-AA-A-
1 TATTTTTTAAATAT
78253742 -A--TTTTAAATAT
1 TATTTTTTAAATAT
78253753 TATTTTTTAAAT-T
1 TATTTTTTAAATAT
78253766 TATT
1 TATT
78253770 ATTAGTTTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 16
0.70 0.03 0.26
Matches are distributed among these distances:
8 4 0.09
9 2 0.05
10 2 0.05
12 4 0.09
13 16 0.37
14 15 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTTTAAATAT
Found at i:78253811 original size:31 final size:28
Alignment explanation
Indices: 78253758--78253824 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 28
78253748 AATATTATTT
78253758 TTTAAATTTATTATTAGTTTTATAATAA
1 TTTAAATTTATTATTAGTTTTATAATAA
* *
78253786 TTTAAATATTATTTAATTTGTTTTATAATAT
1 TTTAAAT-TTA-TT-ATTAGTTTTATAATAA
78253817 TTTAAATT
1 TTTAAATT
78253825 ATAATTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 7 0.21
29 3 0.09
30 3 0.09
31 21 0.62
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTAAATTTATTATTAGTTTTATAATAA
Found at i:78253833 original size:14 final size:15
Alignment explanation
Indices: 78253808--78253836 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
78253798 TTAATTTGTT
78253808 TTATAATATTTTAAA
1 TTATAATATTTTAAA
78253823 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
78253837 AATATTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:78254106 original size:22 final size:21
Alignment explanation
Indices: 78254053--78254106 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
78254043 ATTTTTTGCT
*
78254053 ATTAATTTTAAAAAGTTTAAA
1 ATTAATTTTGAAAAGTTTAAA
* * *
78254074 ATTTATATTTGAAATGTTTTATA
1 ATTAAT-TTTGAAAAG-TTTAAA
78254097 ATTAATTTTG
1 ATTAATTTTG
78254107 TTATTTCTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 5 0.19
22 11 0.42
23 10 0.38
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
ATTAATTTTGAAAAGTTTAAA
Found at i:78254148 original size:15 final size:16
Alignment explanation
Indices: 78254097--78254156 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 16
78254087 ATGTTTTATA
*
78254097 ATTAATTTTGTTATTT
1 ATTAATTTTATTATTT
* *
78254113 CTCTGACATTTTTTTATTT
1 AT-T-A-ATTTTATTATTT
*
78254132 ATTTATTTTATTA-TT
1 ATTAATTTTATTATTT
78254147 ATTAATTTTA
1 ATTAATTTTA
78254157 AAAAACTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
15 11 0.31
16 9 0.26
17 1 0.03
18 2 0.06
19 12 0.34
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (16 bp):
ATTAATTTTATTATTT
Found at i:78254218 original size:20 final size:20
Alignment explanation
Indices: 78254193--78254313 Score: 66
Period size: 20 Copynumber: 5.6 Consensus size: 20
78254183 GTTTTATAAT
78254193 ATATATTTTTAAAATTTTAA
1 ATATATTTTTAAAATTTTAA
*
78254213 ATATATATATTTGAAATTATTTT-T
1 ATATAT-T-TTT-AAA--ATTTTAA
* * *
78254237 CTAAATTTTAAATATTATTTTTAA
1 ATATATTTTTAA-A--AT-TTTAA
*
78254261 ATCAT-TTTTTAAAAATTTAA
1 AT-ATATTTTTAAAATTTTAA
* *
78254281 ATATTATTTTTGAAATATTAA
1 ATA-TATTTTTAAAATTTTAA
78254302 ATATATTTTTAA
1 ATATATTTTTAA
78254314 TAATATAAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 22
0.69 0.12 0.20
Matches are distributed among these distances:
19 1 0.01
20 22 0.29
21 19 0.25
22 10 0.13
23 8 0.10
24 11 0.14
25 6 0.08
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATATATTTTTAAAATTTTAA
Found at i:78254218 original size:22 final size:22
Alignment explanation
Indices: 78254184--78254311 Score: 68
Period size: 22 Copynumber: 5.8 Consensus size: 22
78254174 ATTTGAAATG
78254184 TTTTATAATATATATTTTTAAAA
1 TTTTA-AATATATATTTTTAAAA
* *
78254207 TTTTAAATATATATATTTGAAA
1 TTTTAAATATATATTTTTAAAA
** * * *
78254229 TTATT-TTTCTAAATTTTAAATATTA
1 TT-TTAAATATATATTTTTAA-A--A
*
78254254 TTTTTAAAT-CAT-TTTTTAAAA
1 -TTTTAAATATATATTTTTAAAA
* *
78254275 ATTTAAATAT-TATTTTTGAAA
1 TTTTAAATATATATTTTTAAAA
*
78254296 TATTAAATATAT-TTTT
1 TTTTAAATATATATTTT
78254312 AATAATATAA
Statistics
Matches: 77, Mismatches: 19, Indels: 20
0.66 0.16 0.17
Matches are distributed among these distances:
20 8 0.10
21 21 0.27
22 26 0.34
23 9 0.12
24 6 0.08
25 4 0.05
26 3 0.04
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTTAAATATATATTTTTAAAA
Found at i:78254280 original size:33 final size:33
Alignment explanation
Indices: 78254198--78254296 Score: 128
Period size: 33 Copynumber: 2.9 Consensus size: 33
78254188 ATAATATATA
* *
78254198 TTTTTAAAATTTTAAATATATATATTTGAAATTAT
1 TTTTTAAAATTTTAAATAT-TAT-TTTTAAATCAT
78254233 TTTTCT-AAATTTTAAATATTATTTTTAAATCAT
1 TTTT-TAAAATTTTAAATATTATTTTTAAATCAT
*
78254266 TTTTTAAAAATTTAAATATTATTTTTGAAAT
1 TTTTTAAAATTTTAAATATTATTTTT-AAAT
78254297 ATTAAATATA
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
32 1 0.02
33 32 0.55
34 7 0.12
35 17 0.29
36 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (33 bp):
TTTTTAAAATTTTAAATATTATTTTTAAATCAT
Found at i:78254318 original size:21 final size:20
Alignment explanation
Indices: 78254257--78254319 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
78254247 AATATTATTT
78254257 TTAAATCAT-TTTTTAAAA-A
1 TTAAAT-ATATTTTTAAAATA
*
78254276 TTTAAATATTATTTTTGAAATA
1 -TTAAATA-TATTTTTAAAATA
78254298 TTAAATATATTTTTAATAATA
1 TTAAATATATTTTTAA-AATA
78254319 T
1 T
78254320 AAAACATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 1 0.03
20 15 0.41
21 20 0.54
22 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
TTAAATATATTTTTAAAATA
Found at i:78254322 original size:20 final size:20
Alignment explanation
Indices: 78254258--78254322 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
78254248 ATATTATTTT
* *
78254258 TAAATCATT-TTTTAAAAATT
1 TAAAT-ATTATTTTTAAAATA
*
78254278 TAAATATTATTTTTGAAATA
1 TAAATATTATTTTTAAAATA
78254298 TTAAATA-TATTTTTAATAATA
1 -TAAATATTATTTTTAA-AATA
78254319 TAAA
1 TAAA
78254323 ACATTAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 3 0.08
20 25 0.66
21 10 0.26
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
TAAATATTATTTTTAAAATA
Found at i:78254511 original size:13 final size:13
Alignment explanation
Indices: 78254493--78254529 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
78254483 TTGTTTTATA
78254493 ATATTTTAAATTT
1 ATATTTTAAATTT
78254506 ATATTTTAAA--T
1 ATATTTTAAATTT
*
78254517 ATTTTTTAAATTT
1 ATATTTTAAATTT
78254530 TAAATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
11 10 0.48
13 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTTTAAATTT
Found at i:78254533 original size:31 final size:29
Alignment explanation
Indices: 78254486--78254574 Score: 83
Period size: 31 Copynumber: 3.0 Consensus size: 29
78254476 TTATTATTTG
*
78254486 TTTTATAATATTTTAAATTTATATTTTAAATA
1 TTTTTTAA-ATTTTAAATTTA-ATTTTAAA-A
*
78254518 TTTTTTAAATTTTAAATATAATTTTTATAAA
1 TTTTTTAAATTTTAAATTTAA-TTTTA-AAA
* *
78254549 -TTATT-AATTTTAAAATTAATTTTAAA
1 TTTTTTAAATTTTAAATTTAATTTTAAA
78254575 GATATTCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
27 2 0.04
28 5 0.10
29 12 0.24
30 5 0.10
31 17 0.34
32 9 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
TTTTTTAAATTTTAAATTTAATTTTAAAA
Found at i:78254542 original size:12 final size:13
Alignment explanation
Indices: 78254495--78254574 Score: 50
Period size: 12 Copynumber: 6.6 Consensus size: 13
78254485 GTTTTATAAT
78254495 ATTTTAAAT-TTA
1 ATTTTAAATATTA
78254507 TATTTTAAATATT-
1 -ATTTTAAATATTA
*
78254520 -TTTTAAATTTTA
1 ATTTTAAATATTA
* *
78254532 AATAT-AAT-TT-
1 ATTTTAAATATTA
*
78254542 -TTATAAATTATTA
1 ATTTTAAA-TATTA
78254555 ATTTTAAA-ATTA
1 ATTTTAAATATTA
78254567 ATTTTAAA
1 ATTTTAAA
78254575 GATATTCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 17
0.71 0.07 0.22
Matches are distributed among these distances:
9 3 0.06
10 2 0.04
11 13 0.24
12 17 0.31
13 11 0.20
14 8 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTAAATATTA
Found at i:78255066 original size:14 final size:15
Alignment explanation
Indices: 78255047--78255075 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
78255037 TTTGAATATC
78255047 TTTAAAA-ATTATAA
1 TTTAAAATATTATAA
78255061 TTTAAAATATTATAA
1 TTTAAAATATTATAA
78255076 AACAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAAAATATTATAA
Found at i:78255160 original size:22 final size:21
Alignment explanation
Indices: 78255133--78255187 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
78255123 GAAAGTTTAA
78255133 AATATTTAAATATTAAAAAAAT
1 AATATTTAAA-ATTAAAAAAAT
*
78255155 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAA-TTAAAAAAAT
*
78255177 AA-ATTCAAAAT
1 AATATTTAAAAT
78255188 ATATATTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 8 0.27
22 21 0.70
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
AATATTTAAAATTAAAAAAAT
Found at i:78257738 original size:24 final size:23
Alignment explanation
Indices: 78257706--78257784 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 23
78257696 TTTTACGTTA
78257706 TAATATTATTACAGTATCAATAAT
1 TAATATTATTA-AGTATCAATAAT
* **
78257730 TAATATTA-TAAATAT-TGT-AT
1 TAATATTATTAAGTATCAATAAT
*
78257750 TAAAATATTATTATAGTATCAATAGT
1 T--AATATTATTA-AGTATCAATAAT
78257776 TAATATTAT
1 TAATATTAT
78257785 AAATATTGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 12
0.69 0.11 0.20
Matches are distributed among these distances:
20 3 0.07
21 1 0.02
22 11 0.26
23 4 0.10
24 20 0.48
25 1 0.02
26 2 0.05
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (23 bp):
TAATATTATTAAGTATCAATAAT
Found at i:78257757 original size:13 final size:14
Alignment explanation
Indices: 78257733--78257797 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
78257723 CAATAATTAA
78257733 TATTATAAATATTG
1 TATTATAAATATTG
*
78257747 TATTA-AAATATTAT
1 TATTATAAATATT-G
* *
78257761 TATAGTATCAATAGTTAA
1 TAT--TATAAATA-TT-G
78257779 TATTATAAATATTG
1 TATTATAAATATTG
78257793 TATTA
1 TATTA
78257798 AATGGTTCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
13 7 0.17
14 13 0.32
15 2 0.05
16 9 0.22
17 4 0.10
18 6 0.15
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.48
Consensus pattern (14 bp):
TATTATAAATATTG
Found at i:78257757 original size:46 final size:46
Alignment explanation
Indices: 78257707--78257799 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
78257697 TTTACGTTAT
78257707 AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
1 AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
* *
78257753 AATATTATTATAGTATCAATAGTTAATATTATAAATATTGTATTAA
1 AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
78257799 A
1 A
78257800 TGGTTCACTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.44
Consensus pattern (46 bp):
AATATTATTACAGTATCAATAATTAATATTATAAATATTGTATTAA
Found at i:78261790 original size:3 final size:3
Alignment explanation
Indices: 78261782--78261807 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
78261772 TCCTCCCCAC
78261782 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
78261808 CCGATACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:78266941 original size:20 final size:21
Alignment explanation
Indices: 78266908--78266950 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
78266898 TTTTAATTAA
78266908 TTTCTAATAATTTTATGATTTT
1 TTTCTAAT-ATTTTATGATTTT
*
78266930 TTTCTAAT-TTTTATGGTTTT
1 TTTCTAATATTTTATGATTTT
78266950 T
1 T
78266951 AATAAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
22 8 0.40
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTCTAATATTTTATGATTTT
Found at i:78266987 original size:44 final size:43
Alignment explanation
Indices: 78266939--78267060 Score: 110
Period size: 41 Copynumber: 2.9 Consensus size: 43
78266929 TTTTCTAATT
78266939 TTTATGGTTTTTAATAAATTATTTTTATAAATTTTTTAAAAAAA
1 TTTATGGTTTTTAAT-AATTATTTTTATAAATTTTTTAAAAAAA
* * * * *
78266983 TTTATGGCTTTTAAT--TTATTTTTCT-AATTATTTTTATAAAT
1 TTTATGGTTTTTAATAATTATTTTTATAAATT-TTTTAAAAAAA
* *
78267024 TTTAATGATTTTT-ATATATT-TTTTTATAAATTCTTTA
1 TTT-ATGGTTTTTAATA-ATTATTTTTATAAATTTTTTA
78267061 TGTTTTTTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
40 4 0.06
41 22 0.35
42 7 0.11
43 9 0.15
44 20 0.32
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (43 bp):
TTTATGGTTTTTAATAATTATTTTTATAAATTTTTTAAAAAAA
Found at i:78267034 original size:19 final size:19
Alignment explanation
Indices: 78267007--78267045 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
78266997 TTTATTTTTC
*
78267007 TAATTATTTTTATAAATTT
1 TAATGATTTTTATAAATTT
*
78267026 TAATGATTTTTATATATTT
1 TAATGATTTTTATAAATTT
78267045 T
1 T
78267046 TTTATAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TAATGATTTTTATAAATTT
Found at i:78267035 original size:31 final size:29
Alignment explanation
Indices: 78266991--78267071 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 29
78266981 AATTTATGGC
*
78266991 TTTTAATTTATTTTTCTAATTATTTTTATAAA
1 TTTTAA-TGATTTTT-TAATT-TTTTTATAAA
78267023 TTTTAATGATTTTTATATATTTTTTTATAAA
1 TTTTAATGATTTTT-TA-ATTTTTTTATAAA
*
78267054 TTCTTTATG-TTTTTTAAT
1 TT-TTAATGATTTTTTAAT
78267072 AATTCTAGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 2 0.05
30 2 0.05
31 26 0.59
32 14 0.32
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (29 bp):
TTTTAATGATTTTTTAATTTTTTTATAAA
Found at i:78267075 original size:20 final size:21
Alignment explanation
Indices: 78267023--78267077 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
78267013 TTTTTATAAA
* *
78267023 TTTTAATGATTTTTATATATT
1 TTTTAATAATTCTTATATATT
* *
78267044 TTTTTATAAATTCTT-TATGTT
1 TTTTAAT-AATTCTTATATATT
78267065 TTTTAATAATTCT
1 TTTTAATAATTCT
78267078 AGAATAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 6 0.21
21 17 0.61
22 5 0.18
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTTAATAATTCTTATATATT
Found at i:78267897 original size:20 final size:21
Alignment explanation
Indices: 78267865--78267903 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
78267855 TTTGGTGAGA
78267865 GAGTCCAAACTTTT-TGCTTT
1 GAGTCCAAACTTTTGTGCTTT
78267885 GAGT-CAAAGCTTTTGTGCT
1 GAGTCCAAA-CTTTTGTGCT
78267904 AACAAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (21 bp):
GAGTCCAAACTTTTGTGCTTT
Found at i:78281876 original size:41 final size:41
Alignment explanation
Indices: 78281812--78281894 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
78281802 AATCTTTGAA
*
78281812 TGGAATTTAGTTGTTGTAAATTTATTTTTAAGAATTTAATC
1 TGGAAATTAGTTGTTGTAAATTTATTTTTAAGAATTTAATC
* *
78281853 TGGAAATTAGTT-TATGTAGATTTATTTTTAAGAATTTGATC
1 TGGAAATTAGTTGT-TGTAAATTTATTTTTAAGAATTTAATC
78281894 T
1 T
78281895 TTTTATTTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 37 0.97
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.51
Consensus pattern (41 bp):
TGGAAATTAGTTGTTGTAAATTTATTTTTAAGAATTTAATC
Found at i:78287342 original size:25 final size:25
Alignment explanation
Indices: 78287308--78287358 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
78287298 AACTTGACAC
78287308 TTGTTCTCATATTAACCCCAAAGGT
1 TTGTTCTCATATTAACCCCAAAGGT
78287333 TTGTTCTCATATTAACCCCAAAGGT
1 TTGTTCTCATATTAACCCCAAAGGT
78287358 T
1 T
78287359 ATTTAACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (25 bp):
TTGTTCTCATATTAACCCCAAAGGT
Found at i:78296205 original size:4 final size:4
Alignment explanation
Indices: 78296196--78296227 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
78296186 TTATTATTTT
78296196 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
78296228 ACTAGTTGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:78300729 original size:16 final size:17
Alignment explanation
Indices: 78300710--78300742 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
78300700 ACTAATGATG
78300710 TATAT-TATAAATTTTT
1 TATATATATAAATTTTT
*
78300726 TATATATATATATTTTT
1 TATATATATAAATTTTT
78300743 ACGTATGTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATATAAATTTTT
Found at i:78301088 original size:15 final size:16
Alignment explanation
Indices: 78301063--78301106 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
78301053 AATCAAGAAT
*
78301063 AAAATTTTAAATTTTA
1 AAAATATTAAATTTTA
*
78301079 AAAATA-TAAATATTA
1 AAAATATTAAATTTTA
78301094 AAAATATTAAATT
1 AAAATATTAAATT
78301107 AAGTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAATATTAAATTTTA
Found at i:78309354 original size:56 final size:56
Alignment explanation
Indices: 78309262--78309387 Score: 182
Period size: 55 Copynumber: 2.2 Consensus size: 56
78309252 CATGAGATTG
* *
78309262 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATA
* * *
78309319 GCACTAAGTATGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATA
*
78309374 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78309388 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.37
56 22 0.35
57 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (56 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATA
Found at i:78309374 original size:27 final size:28
Alignment explanation
Indices: 78309262--78309387 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
78309252 CATGAGATTG
* * * *
78309262 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
78309291 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
78309319 GCACTAAGTATGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
78309347 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
78309374 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
78309388 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.27
28 48 0.53
29 18 0.20
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:78309398 original size:27 final size:27
Alignment explanation
Indices: 78309290--78309400 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
78309280 TAAATTGTAC
* *
78309290 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
78309318 AGCACTAAGTATGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
78309346 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
78309373 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
78309400 A
1 A
78309401 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 30 0.39
28 46 0.61
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:78314938 original size:18 final size:20
Alignment explanation
Indices: 78314911--78314952 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 20
78314901 TAAATATTAA
78314911 AAAATGTCAT-TTATTT-TT
1 AAAATGTCATATTATTTATT
*
78314929 AAAATTTCATAATTATTTATT
1 AAAATGTCAT-ATTATTTATT
78314950 AAA
1 AAA
78314953 TTAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
20 6 0.30
21 5 0.25
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (20 bp):
AAAATGTCATATTATTTATT
Found at i:78318665 original size:3 final size:3
Alignment explanation
Indices: 78318653--78318705 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
78318643 CAATTAAAGT
78318653 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
78318700 ATA ATA
1 ATA ATA
78318706 TTTGCTGATC
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:78320562 original size:19 final size:22
Alignment explanation
Indices: 78320540--78320584 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
78320530 AATATTTACA
78320540 TATTTTA-TTA-ATTT-AGTAT
1 TATTTTAGTTAGATTTGAGTAT
*
78320559 TATTTTAGTTAGATTTGATTAT
1 TATTTTAGTTAGATTTGAGTAT
78320581 TATT
1 TATT
78320585 AACTTTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 3 0.14
21 4 0.18
22 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (22 bp):
TATTTTAGTTAGATTTGAGTAT
Found at i:78320725 original size:15 final size:15
Alignment explanation
Indices: 78320700--78320736 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
78320690 TTTAGAATAG
*
78320700 TAGGCTATTGGGCTT
1 TAGGTTATTGGGCTT
*
78320715 TGGGTTATTGGGCTT
1 TAGGTTATTGGGCTT
78320730 TAGGTTA
1 TAGGTTA
78320737 GCATATGGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.08, G:0.35, T:0.43
Consensus pattern (15 bp):
TAGGTTATTGGGCTT
Found at i:78321645 original size:8 final size:9
Alignment explanation
Indices: 78321624--78321656 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
78321614 ATAAATGATT
78321624 TTTAAAATA
1 TTTAAAATA
78321633 TTTAAAA-A
1 TTTAAAATA
78321641 TTTAAAATA
1 TTTAAAATA
*
78321650 TTCAAAA
1 TTTAAAA
78321657 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (9 bp):
TTTAAAATA
Found at i:78321646 original size:17 final size:17
Alignment explanation
Indices: 78321624--78321657 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78321614 ATAAATGATT
*
78321624 TTTAAAATATTTAAAAA
1 TTTAAAATATTCAAAAA
78321641 TTTAAAATATTCAAAAA
1 TTTAAAATATTCAAAAA
78321658 AATAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTAAAATATTCAAAAA
Found at i:78321663 original size:17 final size:17
Alignment explanation
Indices: 78321626--78321664 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
78321616 AAATGATTTT
* **
78321626 TAAAATATTTAAAAATT
1 TAAAATATTCAAAAAAA
78321643 TAAAATATTCAAAAAAA
1 TAAAATATTCAAAAAAA
78321660 TAAAA
1 TAAAA
78321665 AAATCATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAATATTCAAAAAAA
Found at i:78325835 original size:16 final size:17
Alignment explanation
Indices: 78325800--78325843 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
78325790 CTCGATTTGA
78325800 AAACTC-AAATG-GTTC
1 AAACTCAAAATGAGTTC
78325815 AAACTCAAAATGAGTTC
1 AAACTCAAAATGAGTTC
*
78325832 -AACTTAAAATGA
1 AAACTCAAAATGA
78325844 TCCTAAACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 6 0.23
16 16 0.62
17 4 0.15
ACGTcount: A:0.48, C:0.16, G:0.11, T:0.25
Consensus pattern (17 bp):
AAACTCAAAATGAGTTC
Found at i:78329681 original size:186 final size:186
Alignment explanation
Indices: 78329351--78329715 Score: 511
Period size: 186 Copynumber: 2.0 Consensus size: 186
78329341 ACTTTATAAC
* * *
78329351 TATTTTTTCTTTTTTTAATGGAATTATGTTTATAATTAAATTGTTATAATAAAGGTCGATAATGA
1 TATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAATGA
* * * * * *
78329416 TGGTTGAACGATTGCAAAGCAATAAAAAAAGAAAAATAAGAGCACACAAATTTTACGTGAAAATT
66 CGGTAGAACGATCGCAAAGCAATAAAAAAAGAAAAATAAAAACACACAAATTTTACGTGAAAATC
*
78329481 CTTTCGGGAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGATAATGAT
131 CTTTCGGAAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGATAATGAT
78329537 TATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAATGA
1 TATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAATGA
* * * *
78329602 CGGTAGAACGATCGTAAAGTAA-AAAATAAA-AATAAA-AAAAACACACAAATTTTATGTGGAAA
66 CGGTAGAACGATCGCAAAGCAATAAAA-AAAGAA-AAATAAAAACACACAAATTTTACGTGAAAA
** ** *
78329664 TCCTTTCGAGAAAAAAACTATGAGCAGGGGAGAAGAAATTTACTAATGTTGA
129 TCCTTTCG-GAAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGA
78329716 AAACTGAAAG
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
185 35 0.22
186 122 0.78
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.32
Consensus pattern (186 bp):
TATTTTTTCTTTTTTTAATGGAATTATGTTTATAACTAAATTGTTATAATAAACGTCAATAATGA
CGGTAGAACGATCGCAAAGCAATAAAAAAAGAAAAATAAAAACACACAAATTTTACGTGAAAATC
CTTTCGGAAAAAAACTACAAGCAAAGGAGAAGAAATTCACTAATGTTGATAATGAT
Found at i:78336343 original size:31 final size:31
Alignment explanation
Indices: 78336308--78336370 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
78336298 AACCCAATGG
*
78336308 CTTAAAT-AAAAATTTCTGAATAGTTTAGTGA
1 CTTAAATGAAAAATTTC-GAATAGTTAAGTGA
* *
78336339 CTTAAATGTAAACTTTCGAATAGTTAAGTGA
1 CTTAAATGAAAAATTTCGAATAGTTAAGTGA
78336370 C
1 C
78336371 CAAAACTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (31 bp):
CTTAAATGAAAAATTTCGAATAGTTAAGTGA
Found at i:78350416 original size:18 final size:17
Alignment explanation
Indices: 78350373--78350414 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
78350363 TATAATCGTG
*
78350373 TTTTAAATTTAATTAAA
1 TTTTAAATATAATTAAA
*
78350390 TTTTGAAATATAATTAAT
1 TTTT-AAATATAATTAAA
78350408 TTTTAAA
1 TTTTAAA
78350415 ATTTATCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTTAAATATAATTAAA
Found at i:78358184 original size:30 final size:30
Alignment explanation
Indices: 78358148--78358213 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
78358138 ACTTAAATAA
78358148 TAACAAATGTCTCTAAAATAATAACAAAAT
1 TAACAAATGTCTCTAAAATAATAACAAAAT
* *
78358178 TAACAAATGTCTTTAAACTAATAACAAAAT
1 TAACAAATGTCTCTAAAATAATAACAAAAT
78358208 TAACAA
1 TAACAA
78358214 TAAAATAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (30 bp):
TAACAAATGTCTCTAAAATAATAACAAAAT
Found at i:78360122 original size:28 final size:28
Alignment explanation
Indices: 78360091--78360157 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
78360081 TAAAATACAA
78360091 AAAAAATAATA-AAAATAATAAAGTAAT
1 AAAAAATAATACAAAATAATAAAGTAAT
* * * *
78360118 TAAAAATTATACTAAATAATGAAGTAAT
1 AAAAAATAATACAAAATAATAAAGTAAT
*
78360146 AAAAGATAATAC
1 AAAAAATAATAC
78360158 TATATATACA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (28 bp):
AAAAAATAATACAAAATAATAAAGTAAT
Found at i:78363342 original size:46 final size:46
Alignment explanation
Indices: 78363275--78363496 Score: 243
Period size: 46 Copynumber: 4.8 Consensus size: 46
78363265 TGTAACCCGC
* * * * * *
78363275 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
** * *
78363321 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** *
78363367 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78363414 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
78363460 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78363497 TGCCCAAATA
Statistics
Matches: 148, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 110 0.74
47 29 0.20
49 4 0.03
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78363411 original size:93 final size:93
Alignment explanation
Indices: 78363282--78363450 Score: 248
Period size: 93 Copynumber: 1.8 Consensus size: 93
78363272 CGCCCATAAG
* * * * *
78363282 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTTAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
78363347 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
* * *
78363375 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
78363440 ACAAGTTCGGA
66 ACAAGCTCGGA
78363451 CATTCGCATC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:78366057 original size:30 final size:30
Alignment explanation
Indices: 78366022--78366101 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
78366012 CAAGAAAACT
*
78366022 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
78366052 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
*
78366082 GGATAAAGAAA-CCTAAGATA
1 GAATAAAGAAATCC-AAGATA
78366102 CGAAACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 4 0.09
30 37 0.86
31 2 0.05
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.12
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:78366061 original size:15 final size:15
Alignment explanation
Indices: 78366022--78366092 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
78366012 CAAGAAAACT
78366022 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
78366037 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
78366052 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
78366067 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
78366082 GGATAAAGAAA
1 GAATAAAGAAA
78366093 CCTAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:78366101 original size:15 final size:14
Alignment explanation
Indices: 78366024--78366101 Score: 59
Period size: 15 Copynumber: 5.2 Consensus size: 14
78366014 AGAAAACTGA
78366024 ATAAAGAAATCCAAG
1 ATAAAGAAA-CCAAG
* *
78366039 ATAGAGAAACCCAG
1 ATAAAGAAACCAAG
78366053 AATAAAGAAATCC-AG
1 -ATAAAGAAA-CCAAG
* *
78366068 AATAAAGAGATCCAGG
1 -ATAAAGA-AACCAAG
78366084 ATAAAGAAACCTAAG
1 ATAAAGAAACC-AAG
78366099 ATA
1 ATA
78366102 CGAAACTATG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
14 7 0.14
15 40 0.78
16 4 0.08
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (14 bp):
ATAAAGAAACCAAG
Found at i:78369074 original size:46 final size:46
Alignment explanation
Indices: 78369007--78369228 Score: 279
Period size: 46 Copynumber: 4.8 Consensus size: 46
78368997 CGTAACCCGC
* * * *
78369007 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
78369053 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** *
78369099 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
78369146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78369192 CCATAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78369229 TGCCCAAATA
Statistics
Matches: 153, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 113 0.74
47 31 0.20
49 4 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78369126 original size:93 final size:93
Alignment explanation
Indices: 78369014--78369182 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
78369004 CGCCCATAAG
* * *
78369014 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78369079 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
78369107 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
78369172 ACGAGTTCGGA
66 ACGAGCTCGGA
78369183 CATTCGCATC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:78371054 original size:61 final size:61
Alignment explanation
Indices: 78370929--78371054 Score: 155
Period size: 61 Copynumber: 2.1 Consensus size: 61
78370919 GTAGATTTTG
* * ****
78370929 AAAAACAGAAATTAAAAGGCTCAAGTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAA
1 AAAAACAGAAATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAAA
* * * *
78370990 AAAAATAGAAATTAAAAGGTTCAACTCACCTCTTACAATATGAGTTGA-TTTTTGAAAAAC
1 AAAAACAGAAATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAAA
78371050 AAAAA
1 AAAAA
78371055 TTGAAAACAG
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 12 0.22
61 43 0.78
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (61 bp):
AAAAACAGAAATTAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAAA
Found at i:78371060 original size:14 final size:14
Alignment explanation
Indices: 78371041--78371074 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
78371031 GAGTTGATTT
78371041 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
*
78371055 TTG-AAAACAGAAA
1 TTGAAAAACAAAAA
78371068 TTGAAAA
1 TTGAAAA
78371075 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:78371160 original size:14 final size:14
Alignment explanation
Indices: 78371143--78371174 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
78371133 AATATAAATT
*
78371143 AAAAACAGAATTTG
1 AAAAACAGAATCTG
78371157 AAAAACAGAATCTG
1 AAAAACAGAATCTG
78371171 AAAA
1 AAAA
78371175 TACCTCGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.16
Consensus pattern (14 bp):
AAAAACAGAATCTG
Found at i:78371210 original size:102 final size:99
Alignment explanation
Indices: 78371044--78371248 Score: 304
Period size: 102 Copynumber: 2.0 Consensus size: 99
78371034 TTGATTTTTG
*
78371044 AAAAACAAAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT
1 AAAAACAAAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT
* *
78371109 CGCAATATGAGTAGATTTTTGAAAAATATAAATT
66 CGCAATATGAGTAGATTTTTGAAAAACAGAAATT
* * *
78371143 AAAAACAGAATTTGAAAAACAG-AATCTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCAC
1 AAAAACAAAAATTG-AAAACAGAAAT-TGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCAC
*
78371207 CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
62 CTCTCGCAATATGAGTAGATTTTTGAAAAACAGAAATT
78371245 AAAA
1 AAAA
78371249 GGTTCAATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
99 15 0.16
100 21 0.22
102 59 0.62
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (99 bp):
AAAAACAAAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT
CGCAATATGAGTAGATTTTTGAAAAACAGAAATT
Found at i:78371285 original size:54 final size:53
Alignment explanation
Indices: 78371198--78371301 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 53
78371188 GACCCGAGGC
*
78371198 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGT
1 TCAACTCACCTCTCGCAATATGAATTGATTTTTG-AAAACAGAAATTAAAAGGT
* *
78371252 TCAATTCACCTCTCGCAATATGAATTGATTTTTGAAAACATAAATTAAAA
1 TCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAACAGAAATTAAAA
78371302 CAGAAATTGG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 15 0.32
54 32 0.68
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (53 bp):
TCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAACAGAAATTAAAAGGT
Found at i:78371382 original size:153 final size:155
Alignment explanation
Indices: 78371096--78371395 Score: 419
Period size: 153 Copynumber: 1.9 Consensus size: 155
78371086 GCCCCGAGGC
* * *
78371096 TCAACTCACCTCTCGCAATATGAGTAGATTTTTGAAAAATATAAATTAAAAACAGAATTTGAAAA
1 TCAACTCACCTCTCGCAATATGAATAGATTTTTGAAAAACATAAATTAAAAACAGAATTGGAAAA
* *
78371161 ACAGAATCTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
66 ACAGAATCTCAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
78371226 TTTTTGAAAAACAGAAATTAAAAGGT
130 TTTTTGAAAAACAGAAATTAAAAGGT
* * *
78371252 TCAATTCACCTCTCGCAATATGAATTGATTTTTG-AAAACATAAATT-AAAACAGAAATTGGAAG
1 TCAACTCACCTCTCGCAATATGAATAGATTTTTGAAAAACATAAATTAAAAACAG-AATTGGAAA
* * * * *
78371315 AACAGAAAT-TCAAAATACTTCAGC-GTGTCCTGAGGCTCAACTCATCTTTCGCAATATGAGTTG
65 AACAG-AATCTCAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
78371378 ATTTTTGAAAAGCAGAAA
129 ATTTTTGAAAAACAGAAA
78371396 CAGAAATTGA
Statistics
Matches: 128, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
153 52 0.41
154 7 0.05
155 35 0.27
156 34 0.27
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (155 bp):
TCAACTCACCTCTCGCAATATGAATAGATTTTTGAAAAACATAAATTAAAAACAGAATTGGAAAA
ACAGAATCTCAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAACAGAAATTAAAAGGT
Found at i:78371446 original size:79 final size:79
Alignment explanation
Indices: 78371315--78371467 Score: 252
Period size: 79 Copynumber: 1.9 Consensus size: 79
78371305 AAATTGGAAG
* * *
78371315 AACAGAAATTCAAAATACTTCAGCGTGTCCTGAGGCTCAACTCATCTTTCGCAATATGAGTTGAT
1 AACAGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
78371380 TTTTGAAAAGCAGA
66 TTTTGAAAAGCAGA
* * *
78371394 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
78371459 TTTTGAAAA
66 TTTTGAAAA
78371468 CATGAATTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (79 bp):
AACAGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGCAGA
Found at i:78371498 original size:15 final size:15
Alignment explanation
Indices: 78371478--78371506 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
78371468 CATGAATTAA
78371478 AACAGAAATTGAAAG
1 AACAGAAATTGAAAG
78371493 AACAGAAATTGAAA
1 AACAGAAATTGAAA
78371507 ATACCTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
AACAGAAATTGAAAG
Found at i:78371556 original size:178 final size:178
Alignment explanation
Indices: 78371247--78371640 Score: 680
Period size: 178 Copynumber: 2.2 Consensus size: 178
78371237 CAGAAATTAA
* * * *
78371247 AAGGTTCAATTCACCTCTCGCAATATGAATTGATTTTTGAAAACATAAATTAAAACAGAAATTGG
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTAAAACAGAAATTGA
* * *
78371312 AAGAACAGAAATTCAAAATACTTCAGCGTGTCCTGAGGCTCAACTCATCTTTCGCAATATGAGTT
66 AAGAACAGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
78371377 GATTTTTGAAAAGCAGAAACAGAAATTGAAATTACCTCAGCGTGTCTT
131 GATTTTTGAAAAGCAGAAACAAAAATTGAAATTACCTCAGCGTGTCCT
* *
78371425 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAACAGAAATTGA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTAAAACAGAAATTGA
*
78371490 AAGAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66 AAGAACAGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
78371555 GATTTTTGAAAAGCAGAAACAAAAATTGAAATTACCTCAGCGTGTCCT
131 GATTTTTGAAAAGCAGAAACAAAAATTGAAATTACCTCAGCGTGTCCT
78371603 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
78371641 TTTGAAACAT
Statistics
Matches: 203, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
178 203 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (178 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTAAAACAGAAATTGA
AAGAACAGAAATTCAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAACAAAAATTGAAATTACCTCAGCGTGTCCT
Found at i:78371629 original size:79 final size:79
Alignment explanation
Indices: 78371493--78371720 Score: 331
Period size: 74 Copynumber: 2.9 Consensus size: 79
78371483 AAATTGAAAG
* *
78371493 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
78371558 TTTTGAAAAGCAGA
66 TTTTGAAAAGCAGA
*
78371572 AACAAAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
***
78371637 TTTT-----TTTGA
66 TTTTGAAAAGCAGA
* * * *
78371646 AACATAAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAGATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
78371711 TTTTGAAAAG
66 TTTTGAAAAG
78371721 TATAAATTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
74 66 0.50
79 66 0.50
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (79 bp):
AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGCAGA
Found at i:78383589 original size:20 final size:20
Alignment explanation
Indices: 78383564--78383604 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78383554 ATATTCACCC
78383564 AACATAGCGATGAAATCGAT
1 AACATAGCGATGAAATCGAT
* * *
78383584 AACATAGTGTTTAAATCGAT
1 AACATAGCGATGAAATCGAT
78383604 A
1 A
78383605 CGTTGCCTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (20 bp):
AACATAGCGATGAAATCGAT
Found at i:78384447 original size:28 final size:28
Alignment explanation
Indices: 78384416--78384474 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
78384406 AAATAATAAA
*
78384416 ATAATAAAGTAATTAAAA-ATCATACTAT
1 ATAATAAAGTAA-TAAAAGATAATACTAT
78384444 ATAATAAAGTAATAAAAGATAATACTAT
1 ATAATAAAGTAATAAAAGATAATACTAT
78384472 ATA
1 ATA
78384475 TACATGTACG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (28 bp):
ATAATAAAGTAATAAAAGATAATACTAT
Found at i:78386645 original size:14 final size:15
Alignment explanation
Indices: 78386615--78386647 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
78386605 CCTTAATTAA
78386615 AATTTATTTTAACTT
1 AATTTATTTTAACTT
*
78386630 AATTTA-TTTCACTT
1 AATTTATTTTAACTT
78386644 AATT
1 AATT
78386648 AATACTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (15 bp):
AATTTATTTTAACTT
Found at i:78389236 original size:21 final size:21
Alignment explanation
Indices: 78389212--78389305 Score: 62
Period size: 21 Copynumber: 4.5 Consensus size: 21
78389202 TGACTTAAGC
*
78389212 GGTGGTGGTGGAGAATGGACA
1 GGTGGTGGTGGAGAATGAACA
* * * * *
78389233 GGTGGTGGAGGGGAGTAAACC
1 GGTGGTGGTGGAGAATGAACA
* * ** * *
78389254 GGTGCTGGTGGTGGCTTAACC
1 GGTGGTGGTGGAGAATGAACA
* *
78389275 GGTGGAGGTGGAGAATGGACA
1 GGTGGTGGTGGAGAATGAACA
78389296 GGTGGTGGTG
1 GGTGGTGGTG
78389306 AGGAGACGGG
Statistics
Matches: 52, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.19, C:0.09, G:0.52, T:0.20
Consensus pattern (21 bp):
GGTGGTGGTGGAGAATGAACA
Found at i:78393130 original size:18 final size:18
Alignment explanation
Indices: 78393107--78393154 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
78393097 GTTAGAATTT
*
78393107 TTAAAAATTGTAAAAAAA
1 TTAAAAATTATAAAAAAA
* *
78393125 TTAAAAAATATATAAAAA
1 TTAAAAATTATAAAAAAA
78393143 TTATAAAATTAT
1 TTA-AAAATTAT
78393155 GTAACAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
TTAAAAATTATAAAAAAA
Found at i:78406932 original size:16 final size:16
Alignment explanation
Indices: 78406903--78406945 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
78406893 TTCACTTATT
*
78406903 ATTAGATAATTAAATTTA
1 ATTA-ATAAATAAA-TTA
78406921 ATT-ATAAATAAATTA
1 ATTAATAAATAAATTA
78406936 ATTAATAAAT
1 ATTAATAAAT
78406946 TTTGATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 6 0.26
16 14 0.61
18 3 0.13
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
ATTAATAAATAAATTA
Found at i:78410644 original size:19 final size:19
Alignment explanation
Indices: 78410620--78410657 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
78410610 TAAATGAGTA
78410620 GAAGAATATAGTTTAGATT
1 GAAGAATATAGTTTAGATT
78410639 GAAGAATATAGTTTAGATT
1 GAAGAATATAGTTTAGATT
78410658 TAAGTTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (19 bp):
GAAGAATATAGTTTAGATT
Found at i:78416178 original size:19 final size:20
Alignment explanation
Indices: 78416145--78416183 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
78416135 TTTATTTATA
* *
78416145 AAATTATTATTTTAATAAAT
1 AAATTATTATATTAAAAAAT
78416165 AAATT-TTATATTAAAAAAT
1 AAATTATTATATTAAAAAAT
78416184 GAGTATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATTATTATATTAAAAAAT
Found at i:78418000 original size:33 final size:33
Alignment explanation
Indices: 78417958--78418027 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
78417948 AAAGAAAATT
78417958 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
1 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
78417991 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
1 TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
78418024 TTTT
1 TTTT
78418028 TGTTTAGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.09, C:0.20, G:0.11, T:0.60
Consensus pattern (33 bp):
TTTTCTTACATGTCCTTTTCATTTGGTCTTGTC
Found at i:78418028 original size:19 final size:19
Alignment explanation
Indices: 78417968--78418027 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 19
78417958 TTTTCTTACA
78417968 TGTCCTTTTCATTTGGTCT
1 TGTCCTTTTCATTTGGTCT
* *
78417987 TGT-CTTTTC--TT--ACA
1 TGTCCTTTTCATTTGGTCT
78418001 TGTCCTTTTCATTTGGTCT
1 TGTCCTTTTCATTTGGTCT
78418020 TGT-CTTTT
1 TGTCCTTTT
78418028 TGTTTAGAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 11
0.68 0.09 0.23
Matches are distributed among these distances:
14 4 0.12
15 6 0.19
16 2 0.06
17 2 0.06
18 11 0.34
19 7 0.22
ACGTcount: A:0.07, C:0.20, G:0.13, T:0.60
Consensus pattern (19 bp):
TGTCCTTTTCATTTGGTCT
Found at i:78419498 original size:51 final size:51
Alignment explanation
Indices: 78419422--78419525 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
78419412 GCCATCTATT
* *
78419422 GGTGTGTCTACTTGTGTGGATGTTGGGGTTGAAATGGAGAATGGGTTGTTG
1 GGTGTGTCTACTTGTGGGGATGTTGGGATTGAAATGGAGAATGGGTTGTTG
**
78419473 GGTGTGTCTACTTGTGGGGATGTTGGGATTGGGATGGAGAATGGGTTGTTG
1 GGTGTGTCTACTTGTGGGGATGTTGGGATTGAAATGGAGAATGGGTTGTTG
78419524 GG
1 GG
78419526 ATTTCTAGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.14, C:0.04, G:0.46, T:0.36
Consensus pattern (51 bp):
GGTGTGTCTACTTGTGGGGATGTTGGGATTGAAATGGAGAATGGGTTGTTG
Found at i:78426229 original size:61 final size:60
Alignment explanation
Indices: 78426159--78426336 Score: 152
Period size: 61 Copynumber: 3.0 Consensus size: 60
78426149 TTGTTAAATT
*
78426159 ATATTTAATAATAATTATTTTATATTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAA-TATTTTATATTATTATATATTATGATTTTAATAAATTCATATAAGA
* * * * * *
78426220 ATATTTAATACTAAGAATTTTAT-TAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAA-TATTTTATAT-TATTATATATTATGATT-TT-AA-TAAATTCATATAAGA
* * * *
78426280 ATTATTTTA-AATTATATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATATTTTATATTATTATATATTATGATTTTAATAAATTCATATA
78426337 TTTTATCAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 21
0.71 0.12 0.16
Matches are distributed among these distances:
58 2 0.02
59 25 0.27
60 18 0.20
61 44 0.48
62 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (60 bp):
ATATTTAATAATAATATTTTATATTATTATATATTATGATTTTAATAAATTCATATAAGA
Found at i:78426289 original size:26 final size:25
Alignment explanation
Indices: 78426251--78426309 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
78426241 ATTAAATTAT
*
78426251 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
78426277 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
78426303 ATATTAT
1 ATATTAT
78426310 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:78426308 original size:15 final size:15
Alignment explanation
Indices: 78426264--78426319 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
78426254 TTTTTGTTAA
*
78426264 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
78426279 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
78426290 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
78426305 ATTATATATTATAAT
1 ATTATATTTTATAAT
78426320 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:78426335 original size:24 final size:22
Alignment explanation
Indices: 78426290--78426358 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
78426280 ATTATTTTAA
78426290 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
78426312 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
78426331 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
78426353 ATTATA
1 ATTATA
78426359 AAAAATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:78426354 original size:17 final size:17
Alignment explanation
Indices: 78426236--78426375 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
78426226 AATACTAAGA
*
78426236 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
78426253 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
78426269 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
78426283 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
78426302 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
78426318 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
78426336 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
*
78426353 ATTATAA-AAA--ATAT
1 ATTTTAATAAATTATAT
78426367 A-TTTAATAA
1 ATTTTAATAA
78426376 TAATTATGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 33
0.67 0.09 0.23
Matches are distributed among these distances:
13 6 0.06
14 13 0.14
15 8 0.08
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:78426624 original size:16 final size:16
Alignment explanation
Indices: 78426603--78426670 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
78426593 GATTTGCTAT
78426603 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
78426619 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
78426635 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
78426651 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
78426667 TACA
1 TACA
78426671 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:78426946 original size:23 final size:19
Alignment explanation
Indices: 78426897--78426933 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
78426887 CCCTGTTTTA
*
78426897 CCCTCTGCCTCTTCTGTTC
1 CCCTTTGCCTCTTCTGTTC
78426916 CCCTTTGCCTCTTCTGTT
1 CCCTTTGCCTCTTCTGTT
78426934 TCGCCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.43, G:0.11, T:0.46
Consensus pattern (19 bp):
CCCTTTGCCTCTTCTGTTC
Found at i:78426975 original size:15 final size:15
Alignment explanation
Indices: 78426955--78427016 Score: 65
Period size: 15 Copynumber: 4.1 Consensus size: 15
78426945 GCTCCCTCCG
* *
78426955 TTTCTTTTCTTTTCT
1 TTTCTTTGCTTTGCT
78426970 TTTCTTTGCTTTGCT
1 TTTCTTTGCTTTGCT
78426985 TTCTCCTTTGCTTT-C-
1 TT-T-CTTTGCTTTGCT
*
78427000 TTCCTTTGCTTTGCT
1 TTTCTTTGCTTTGCT
78427015 TT
1 TT
78427017 CTCCAGTCGA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 9 0.22
14 1 0.03
15 19 0.47
16 2 0.05
17 9 0.22
ACGTcount: A:0.00, C:0.24, G:0.08, T:0.68
Consensus pattern (15 bp):
TTTCTTTGCTTTGCT
Found at i:78426995 original size:12 final size:13
Alignment explanation
Indices: 78426978--78427011 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
78426968 CTTTTCTTTG
78426978 CTTTGCTTTC-TC
1 CTTTGCTTTCTTC
78426990 CTTTGCTTTCTTC
1 CTTTGCTTTCTTC
78427003 CTTTGCTTT
1 CTTTGCTTT
78427012 GCTTTCTCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.29, G:0.09, T:0.62
Consensus pattern (13 bp):
CTTTGCTTTCTTC
Found at i:78427036 original size:31 final size:30
Alignment explanation
Indices: 78426973--78427042 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
78426963 CTTTTCTTTT
* * *
78426973 CTTTGCTTTGCTTTCTCCTTTGCTTTCTTC
1 CTTTGCTTTGCTTTCTCCGTCGCTATCTTC
78427003 CTTTGCTTTGCTTTCTCCAGTCGAC-ATCTTC
1 CTTTGCTTTGCTTTCTCC-GTCG-CTATCTTC
78427034 CTTTGCTTT
1 CTTTGCTTT
78427043 CTCCAGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 18 0.51
31 16 0.46
32 1 0.03
ACGTcount: A:0.04, C:0.30, G:0.11, T:0.54
Consensus pattern (30 bp):
CTTTGCTTTGCTTTCTCCGTCGCTATCTTC
Found at i:78429353 original size:18 final size:18
Alignment explanation
Indices: 78429307--78429354 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
78429297 TATAAGAATA
*
78429307 TTAATTATTA-ATA-ATT
1 TTAATTATAATATATATT
78429323 TT-ATTA-AATTATATATT
1 TTAATTATAA-TATATATT
78429340 TTAATTATAATATAT
1 TTAATTATAATATAT
78429355 TTAATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 4 0.15
16 5 0.19
17 5 0.19
18 9 0.35
19 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTATAATATATATT
Found at i:78429359 original size:15 final size:15
Alignment explanation
Indices: 78429324--78429375 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
78429314 TTAATAATTT
*
78429324 TATTAAATTAT-ATA
1 TATTTAATTATAATA
78429338 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
78429352 TATTTAATAATAAT-
1 TATTTAATTATAATA
78429366 TATGTTAATT
1 TAT-TTAATT
78429376 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:78429442 original size:66 final size:65
Alignment explanation
Indices: 78429372--78429566 Score: 182
Period size: 56 Copynumber: 3.1 Consensus size: 65
78429362 TAATTATGTT
78429372 AATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAA
1 AATTT-TATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAA
78429437 G
65 G
* * * * * *
78429438 AATTTTA--TTA-A--ATTATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATT-ATGTTA
1 AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTAATTTTA
*
78429492 AT
64 AG
* *
78429494 T--TATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAA
1 AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATT-TTAA
78429557 G
65 G
78429558 AATTTTATT
1 AATTTTATT
78429567 AAATTATATA
Statistics
Matches: 95, Mismatches: 18, Indels: 32
0.66 0.12 0.22
Matches are distributed among these distances:
54 3 0.03
56 20 0.21
57 6 0.06
58 1 0.01
59 13 0.14
60 13 0.14
61 1 0.01
62 6 0.06
63 16 0.17
64 4 0.04
65 2 0.02
66 10 0.11
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (65 bp):
AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTAAG
Found at i:78429472 original size:119 final size:120
Alignment explanation
Indices: 78429290--78429610 Score: 619
Period size: 119 Copynumber: 2.7 Consensus size: 120
78429280 ATTGTTTTAT
*
78429290 TAAATT-ATATAAGAATATTAATTATTAATAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
78429354 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
78429409 TAAATTCATATAAGAATATTAATT-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
78429473 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
78429528 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
78429593 TTTAATAATAATTATGTT
66 TTTAATAATAATTATGTT
78429611 TAAATATGAT
Statistics
Matches: 199, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
119 124 0.62
120 75 0.38
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.50
Consensus pattern (120 bp):
TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAG
Found at i:78429478 original size:15 final size:15
Alignment explanation
Indices: 78429443--78429494 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
78429433 TTAAGAATTT
*
78429443 TATTAAATTAT-ATA
1 TATTTAATTATAATA
78429457 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
78429471 TATTTAATAATAAT-
1 TATTTAATTATAATA
78429485 TATGTTAATT
1 TAT-TTAATT
78429495 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:78429593 original size:16 final size:16
Alignment explanation
Indices: 78429572--78429613 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
78429562 TTATTAAATT
*
78429572 ATATATTTTAATTATA
1 ATATATTTTAATAATA
78429588 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
78429603 AT-TATGTTTAA
1 ATATAT-TTTAA
78429614 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:78429598 original size:15 final size:15
Alignment explanation
Indices: 78429563--78429604 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
78429553 TTAAGAATTT
*
78429563 TATTAAATTAT-ATA
1 TATTTAATTATAATA
78429577 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
78429591 TATTTAATAATAAT
1 TATTTAATTATAAT
78429605 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:78443863 original size:31 final size:31
Alignment explanation
Indices: 78443823--78443888 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
78443813 CCACACAATG
* **
78443823 ATCATTAAACCATTTGAAAGATTTTATTTAA
1 ATCACTAAACCATTCAAAAGATTTTATTTAA
* *
78443854 ATCACTAAACTATTCAAAAGTTTTTATTTAA
1 ATCACTAAACCATTCAAAAGATTTTATTTAA
78443885 ATCA
1 ATCA
78443889 ATTGGTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.41
Consensus pattern (31 bp):
ATCACTAAACCATTCAAAAGATTTTATTTAA
Found at i:78445881 original size:49 final size:50
Alignment explanation
Indices: 78445713--78445900 Score: 227
Period size: 50 Copynumber: 3.8 Consensus size: 50
78445703 TATTGTGGGA
** * *
78445713 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATAA-TTAGG
* * * * **
78445764 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTA-TCAAATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACT-AGATAATTAGG
* *
78445814 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATAATTAGG
*
78445863 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
78445901 CAGACAGCTT
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 38 0.32
50 42 0.36
51 37 0.32
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATAATTAGG
Found at i:78449705 original size:20 final size:20
Alignment explanation
Indices: 78449676--78449713 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
78449666 TAAATATATT
78449676 TTTATAAATTATTTAATAAA
1 TTTATAAATTATTTAATAAA
*
78449696 TTTATTAATTATTTAATA
1 TTTATAAATTATTTAATA
78449714 TTAAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATAAATTATTTAATAAA
Found at i:78450559 original size:18 final size:18
Alignment explanation
Indices: 78450518--78450556 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
78450508 AAAATATAAA
*
78450518 TTAATATTTTTATATTTT
1 TTAATAATTTTATATTTT
78450536 TTAATAATTTTA-ATTTT
1 TTAATAATTTTATATTTT
78450553 TTAA
1 TTAA
78450557 ATATATATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTAATAATTTTATATTTT
Found at i:78455348 original size:18 final size:18
Alignment explanation
Indices: 78455327--78455380 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
78455317 AATTCAAAAT
78455327 ATTTATATAATTTTCAAA
1 ATTTATATAATTTTCAAA
* *
78455345 ATTTATAT-TTTTTAAAA
1 ATTTATATAATTTTCAAA
* *
78455362 AATTATAAAATTTTCAAA
1 ATTTATATAATTTTCAAA
78455380 A
1 A
78455381 AAAAATCTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTTATATAATTTTCAAA
Found at i:78455381 original size:18 final size:18
Alignment explanation
Indices: 78455319--78455381 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
78455309 GTTTTTAAAA
*
78455319 TTCAAAATATTTATATAATT
1 TTCAAAA-A-TTATAAAATT
* **
78455339 TTCAAAATTTAT-ATTTT
1 TTCAAAAATTATAAAATT
*
78455356 TTAAAAAATTATAAAATT
1 TTCAAAAATTATAAAATT
78455374 TTCAAAAA
1 TTCAAAAA
78455382 AAAATCTAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
17 12 0.36
18 14 0.42
20 7 0.21
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (18 bp):
TTCAAAAATTATAAAATT
Found at i:78455657 original size:24 final size:25
Alignment explanation
Indices: 78455624--78455670 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
78455614 ATCAACTTGA
78455624 TTAACTCGAAATTTTTTACTCAAGC
1 TTAACTCGAAATTTTTTACTCAAGC
78455649 TTAA-TCGAAATTTTTTACTCAA
1 TTAACTCGAAATTTTTTACTCAA
78455671 ACGCTTACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (25 bp):
TTAACTCGAAATTTTTTACTCAAGC
Found at i:78456171 original size:16 final size:15
Alignment explanation
Indices: 78456145--78456174 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
78456135 TCCTAGGCAT
78456145 ACAAATACAGATAAC
1 ACAAATACAGATAAC
78456160 ACAAATTACAGATAA
1 ACAAA-TACAGATAA
78456175 AAATATTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.17, G:0.07, T:0.17
Consensus pattern (15 bp):
ACAAATACAGATAAC
Found at i:78460716 original size:18 final size:18
Alignment explanation
Indices: 78460689--78460724 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78460679 TTCACATGAA
*
78460689 GAAATCTAATAACCATAT
1 GAAATATAATAACCATAT
*
78460707 GAAATATAATAATCATAT
1 GAAATATAATAACCATAT
78460725 TGAAGATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31
Consensus pattern (18 bp):
GAAATATAATAACCATAT
Done.