Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 245 of 253
Found at i:78927305 original size:26 final size:26
Alignment explanation
Indices: 78927243--78927306 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
78927233 TTTACATAAC
* *
78927243 ATTTACTTTAAATTCATTTATATATT
1 ATTTATTTTAAATTCATTTAGATATT
*
78927269 ATTTATCTTAAATT-ATTTTAGATATT
1 ATTTATTTTAAATTCA-TTTAGATATT
*
78927295 ATTTGTTTTAAA
1 ATTTATTTTAAA
78927307 CTTTTTTTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 1 0.03
26 31 0.97
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (26 bp):
ATTTATTTTAAATTCATTTAGATATT
Found at i:78928969 original size:23 final size:22
Alignment explanation
Indices: 78928929--78928984 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
78928919 CCAATTTTAC
78928929 ATAAAGATATACCTA-TATATATA
1 ATAAAGATATA--TACTATATATA
* *
78928952 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
78928973 ATAAA-ATATATA
1 ATAAAGATATATA
78928985 AATAACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
23 10 0.34
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:78929068 original size:13 final size:14
Alignment explanation
Indices: 78929028--78929073 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
78929018 GTATGATAAA
78929028 ATAATAATATACAT
1 ATAATAATATACAT
*
78929042 AATATATAAAATACAT
1 -ATA-ATAATATACAT
78929058 ATAAT-ATATACAT
1 ATAATAATATACAT
78929071 ATA
1 ATA
78929074 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:78929197 original size:21 final size:19
Alignment explanation
Indices: 78929167--78929210 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
78929157 AGAAATACTT
*
78929167 AATATATA-ATAAT-TTAA
1 AATATATACATAATATAAA
78929184 AATATATACATAATATAAA
1 AATATATACATAATATAAA
78929203 AATATATA
1 AATATATA
78929211 TAGAACGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
AATATATACATAATATAAA
Found at i:78929476 original size:17 final size:17
Alignment explanation
Indices: 78929390--78929477 Score: 62
Period size: 17 Copynumber: 5.3 Consensus size: 17
78929380 AATGCTTCAC
78929390 AAATATATATATAC-TAA
1 AAATATATATATACAT-A
* *
78929407 AAATATACATAATATATA
1 AAATATATAT-ATACATA
78929425 AAATATAGTAT-T--A-A
1 AAATATA-TATATACATA
* *
78929439 AAGTATATATA-ACGTA
1 AAATATATATATACATA
78929455 TAAATATATATATACATA
1 -AAATATATATATACATA
78929473 AAATA
1 AAATA
78929478 ATACATAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
13 3 0.05
14 7 0.13
15 1 0.02
16 1 0.02
17 25 0.45
18 15 0.27
19 3 0.05
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (17 bp):
AAATATATATATACATA
Found at i:78929581 original size:3 final size:3
Alignment explanation
Indices: 78929573--78929608 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
78929563 ATGACAACAC
78929573 ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
78929609 ATTAAAGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:78929597 original size:17 final size:17
Alignment explanation
Indices: 78929575--78929609 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
78929565 GACAACACAT
78929575 AATAATAATAATAATAA
1 AATAATAATAATAATAA
78929592 AATAATAATAATAATAA
1 AATAATAATAATAATAA
78929609 A
1 A
78929610 TTAAAGTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAATAATAATAATAA
Found at i:78931427 original size:18 final size:18
Alignment explanation
Indices: 78931404--78931438 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78931394 TCAAAAATGT
*
78931404 TGTTTTAGTAAACCAAAA
1 TGTTTTAGTAAAACAAAA
*
78931422 TGTTTTATTAAAACAAA
1 TGTTTTAGTAAAACAAA
78931439 GGTGATCCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (18 bp):
TGTTTTAGTAAAACAAAA
Found at i:78936195 original size:26 final size:26
Alignment explanation
Indices: 78936158--78936241 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
78936148 TAATACAAAT
* *
78936158 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
78936184 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
78936210 TGATAATGGGTTAGGTAAAGGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
78936236 TGATAA
1 TGATAA
78936242 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:78939103 original size:15 final size:15
Alignment explanation
Indices: 78939083--78939134 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
78939073 ACTACAAAAA
78939083 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
78939098 ATTTATAATTTTAATAAAT
1 ATTTAT--TATTAAT--AT
*
78939117 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
78939132 ATT
1 ATT
78939135 AATATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:78939140 original size:14 final size:14
Alignment explanation
Indices: 78939113--78939221 Score: 50
Period size: 13 Copynumber: 7.6 Consensus size: 14
78939103 TAATTTTAAT
*
78939113 AAATATTTATTATTA
1 AAATA-TTAATATTA
78939128 AAATATTAATATTA
1 AAATATTAATATTA
* *
78939142 AATTTTCAATAATATGTGA
1 AA--AT-ATTAATAT-T-A
78939161 ATAATATT-AT-TTA
1 A-AATATTAATATTA
* *
78939174 AAATTATTATTTTTA
1 AAA-TATTAATATTA
*
78939189 AAAT-TTATTATTA
1 AAATATTAATATTA
78939202 AAATA--AA-ATTA
1 AAATATTAATATTA
78939213 AAATATTAA
1 AAATATTAA
78939222 ATAATTTATT
Statistics
Matches: 74, Mismatches: 8, Indels: 26
0.69 0.07 0.24
Matches are distributed among these distances:
11 9 0.12
12 3 0.04
13 20 0.27
14 13 0.18
15 12 0.16
16 3 0.04
17 9 0.12
18 2 0.03
19 2 0.03
20 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (14 bp):
AAATATTAATATTA
Found at i:78939196 original size:16 final size:16
Alignment explanation
Indices: 78939165--78939201 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
78939155 ATGTGAATAA
78939165 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
78939181 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
78939197 TATTA
1 TATTA
78939202 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:78939253 original size:22 final size:22
Alignment explanation
Indices: 78939209--78939268 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
78939199 TTAAAATAAA
*
78939209 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
78939229 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
78939251 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
78939269 TATAGGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:78939931 original size:31 final size:31
Alignment explanation
Indices: 78939886--78939958 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
78939876 TTACAAAATG
*
78939886 GTTATTGAATTATTCAAAAGTTTTCATTTAA
1 GTTATTGAACTATTCAAAAGTTTTCATTTAA
* *
78939917 GTTATTAAACTATTCAAAAGTTTTTATTTAA
1 GTTATTGAACTATTCAAAAGTTTTCATTTAA
*
78939948 GTCATTGAACT
1 GTTATTGAACT
78939959 GTTAAGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.47
Consensus pattern (31 bp):
GTTATTGAACTATTCAAAAGTTTTCATTTAA
Found at i:78948558 original size:13 final size:13
Alignment explanation
Indices: 78948540--78948568 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
78948530 TTAGAGAATG
78948540 AAAAAAAAAATTA
1 AAAAAAAAAATTA
78948553 AAAAAAAAAATTA
1 AAAAAAAAAATTA
78948566 AAA
1 AAA
78948569 GAACATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAAAAAATTA
Found at i:78950234 original size:33 final size:33
Alignment explanation
Indices: 78950174--78950237 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
78950164 CTTGAATTTT
* *
78950174 AAAATAGAAAAAAATAAAAGGAATAAATTCTTA
1 AAAATAAAAAAAAATAAAAGAAATAAATTCTTA
*
78950207 AAAATAAAAAAAAAT-ATAGAAACTAAATTCT
1 AAAATAAAAAAAAATAAAAGAAA-TAAATTCT
78950238 AAATTTGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 5 0.19
33 22 0.81
ACGTcount: A:0.67, C:0.05, G:0.06, T:0.22
Consensus pattern (33 bp):
AAAATAAAAAAAAATAAAAGAAATAAATTCTTA
Found at i:78955347 original size:74 final size:75
Alignment explanation
Indices: 78955204--78955351 Score: 244
Period size: 75 Copynumber: 2.0 Consensus size: 75
78955194 TTTCTAGGAT
*
78955204 ATTTAAGTACATAGGTAAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
1 ATTTAAGGACATAGGTAAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
78955269 AACGCGTCCC
66 AACGCGTCCC
* * * *
78955279 ATTTAAGGACATAGGTCAATTTTGAAAAAAAAATAAAAAACG-TGTCTTGCAAGAAGCTGTTGAA
1 ATTTAAGGACATAGGTAAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
78955343 AACGCGTCC
66 AACGCGTCC
78955352 TGTAAGACAT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
74 29 0.43
75 39 0.57
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.24
Consensus pattern (75 bp):
ATTTAAGGACATAGGTAAATTTTGAAAAAAAAATAAAAAAAGATATCTTGCAAGAAGCCGTTGAA
AACGCGTCCC
Found at i:78966040 original size:29 final size:29
Alignment explanation
Indices: 78966001--78966059 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
78965991 CTCTCAAACA
78966001 TCACTCATAAAATTCTATAATTAATACAT
1 TCACTCATAAAATTCTATAATTAATACAT
*
78966030 TCACTCGTAAAATTCTATAATTAATACAT
1 TCACTCATAAAATTCTATAATTAATACAT
78966059 T
1 T
78966060 TTTAATTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.39
Consensus pattern (29 bp):
TCACTCATAAAATTCTATAATTAATACAT
Found at i:78974232 original size:17 final size:17
Alignment explanation
Indices: 78974210--78974245 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
78974200 ATCGAGATTA
78974210 TAATTTTTACGATAATC
1 TAATTTTTACGATAATC
*
78974227 TAATTTTTAGGATAATC
1 TAATTTTTACGATAATC
78974244 TA
1 TA
78974246 CAATATAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.47
Consensus pattern (17 bp):
TAATTTTTACGATAATC
Found at i:78975163 original size:18 final size:17
Alignment explanation
Indices: 78975129--78975163 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
78975119 GATTTAGGCT
*
78975129 TTAAATTTTTTAATTAA
1 TTAAATTTTTCAATTAA
78975146 TTAAATTTATTCAATTAA
1 TTAAATTT-TTCAATTAA
78975164 AAATCTATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TTAAATTTTTCAATTAA
Found at i:78975962 original size:17 final size:18
Alignment explanation
Indices: 78975933--78975974 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
78975923 TAATAAAAAT
*
78975933 ATAATTT-TATTATTTTA
1 ATAATTTATATTATTTAA
78975950 ATAATTTAT-TTATTTAA
1 ATAATTTATATTATTTAA
*
78975967 AAAATTTA
1 ATAATTTA
78975975 AAAAATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATAATTTATATTATTTAA
Found at i:78978689 original size:22 final size:23
Alignment explanation
Indices: 78978658--78978700 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
78978648 CAATAGTATA
78978658 AAAGATATATA-ATTAACAATACT
1 AAAGATATATACA-TAACAATACT
78978681 AAAG-TATATACATAACAATA
1 AAAGATATATACATAACAATA
78978701 TATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.58, C:0.09, G:0.05, T:0.28
Consensus pattern (23 bp):
AAAGATATATACATAACAATACT
Found at i:78978763 original size:11 final size:11
Alignment explanation
Indices: 78978724--78978799 Score: 62
Period size: 11 Copynumber: 6.5 Consensus size: 11
78978714 TATTAAAAAC
78978724 ATATATACATA
1 ATATATACATA
*
78978735 ATAATATGAAATA
1 AT-ATAT-ACATA
*
78978748 TATATATATATA
1 -ATATATACATA
* *
78978760 ATATAGTATTAGA
1 ATATA-TA-CATA
*
78978773 ATATTTACATA
1 ATATATACATA
78978784 ATATATACATA
1 ATATATACATA
78978795 ATATA
1 ATATA
78978800 AATACTAATG
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
11 24 0.45
12 12 0.23
13 15 0.28
14 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (11 bp):
ATATATACATA
Found at i:78978763 original size:13 final size:13
Alignment explanation
Indices: 78978685--78978808 Score: 52
Period size: 13 Copynumber: 9.9 Consensus size: 13
78978675 AATACTAAAG
*
78978685 TATATACATAACAA
1 TATATACATAA-TA
*
78978699 TATATA-AAAATA
1 TATATACATAATA
* *
78978711 TGATATTA-AAAACA
1 T-ATA-TACATAATA
78978725 TATATACATAATA
1 TATATACATAATA
*
78978738 -ATATGAAAT-ATA
1 TATAT-ACATAATA
*
78978750 TATATATATAATA
1 TATATACATAATA
* *
78978763 TAGTAT-TAGAATA
1 TA-TATACATAATA
78978776 T-T-TACAT-A-A
1 TATATACATAATA
78978785 TATATACATAATA
1 TATATACATAATA
*
78978798 TAAATAC-TAAT
1 TATATACATAAT
78978809 GATGTTAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 26
0.70 0.09 0.21
Matches are distributed among these distances:
9 2 0.02
10 3 0.03
11 7 0.08
12 19 0.22
13 39 0.45
14 17 0.20
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (13 bp):
TATATACATAATA
Found at i:78984099 original size:28 final size:28
Alignment explanation
Indices: 78984043--78984105 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
78984033 GTCATTATCA
*
78984043 ACCCCATAAGTTATAAAACCCTTCTTAT
1 ACCCCATAAGTTATAAAACCCTTCCTAT
* * **
78984071 ACCCCATAAGTTATGAGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACCCTTCCTAT
78984099 ACCCCAT
1 ACCCCAT
78984106 TAATATGGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACCCTTCCTAT
Found at i:78984685 original size:42 final size:43
Alignment explanation
Indices: 78984600--78984685 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 43
78984590 ATATTTCATT
*
78984600 TCCATAATCAAACAAATCCAACACTGTGGAATCAATCAAATTCA
1 TCCATAATCAAACAAATCCAACAC-GTGGAATCAAACAAATTCA
**
78984644 TCCATAATCAAACAAATCGTACAC-TGGAATCAAACAAATTCA
1 TCCATAATCAAACAAATCCAACACGTGGAATCAAACAAATTCA
78984686 GAAAATTAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 17 0.44
44 22 0.56
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (43 bp):
TCCATAATCAAACAAATCCAACACGTGGAATCAAACAAATTCA
Found at i:78987690 original size:12 final size:12
Alignment explanation
Indices: 78987673--78987706 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
78987663 TGGCCCGCCC
78987673 ATATTAATTTTT
1 ATATTAATTTTT
*
78987685 ATATTATTTTTT
1 ATATTAATTTTT
78987697 ATA-TAATTTT
1 ATATTAATTTT
78987707 AAAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:78987731 original size:18 final size:18
Alignment explanation
Indices: 78987708--78987747 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
78987698 TATAATTTTA
*
78987708 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
78987726 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
78987744 AAAA
1 AAAA
78987748 TACATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:78987866 original size:30 final size:29
Alignment explanation
Indices: 78987830--78987891 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
78987820 ACTTAATAAG
78987830 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAA-AAAATTAA
*
78987860 CAAATGCCTTTAAAATAATAAAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAATTAA
78987889 CAA
1 CAA
78987892 TAAAATTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 11 0.35
30 20 0.65
ACGTcount: A:0.58, C:0.15, G:0.03, T:0.24
Consensus pattern (29 bp):
CAAATGCCTCTAAAATAATAAAAAATTAA
Found at i:78988083 original size:17 final size:17
Alignment explanation
Indices: 78988061--78988094 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78988051 TCTTACCCGA
78988061 GGCACATCACACTCTTT
1 GGCACATCACACTCTTT
*
78988078 GGCACATCATACTCTTT
1 GGCACATCACACTCTTT
78988095 AGCCTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (17 bp):
GGCACATCACACTCTTT
Found at i:78992153 original size:21 final size:21
Alignment explanation
Indices: 78992093--78992198 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
78992083 TTCCATTTAG
* *
78992093 CTCTTACGAGCTTCTGTTTAA
1 CTCTTATGAGCTTCTGTTCAA
* * *
78992114 CTCATATAAG-TTTTCGTTCAA
1 CTCTTATGAGCTTCT-GTTCAA
78992135 CTCTTATGAGCTTCTGTTCAA
1 CTCTTATGAGCTTCTGTTCAA
* * * * *
78992156 CCCTTATGGGTTTCTGTTTAG
1 CTCTTATGAGCTTCTGTTCAA
* * *
78992177 CACTTATGTGGTTCTGTTCAA
1 CTCTTATGAGCTTCTGTTCAA
78992198 C
1 C
78992199 CTTCGGGCTT
Statistics
Matches: 65, Mismatches: 18, Indels: 4
0.75 0.21 0.05
Matches are distributed among these distances:
20 3 0.05
21 59 0.91
22 3 0.05
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.43
Consensus pattern (21 bp):
CTCTTATGAGCTTCTGTTCAA
Found at i:79000385 original size:22 final size:21
Alignment explanation
Indices: 79000357--79000398 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
79000347 AAGGCCGTGG
79000357 CTTCCTTTCTTCTTTCTCTTTT
1 CTTCCTTT-TTCTTTCTCTTTT
*
79000379 CTTCCTTTTTCTTTTTCTTT
1 CTTCCTTTTTCTTTCTCTTT
79000399 CTTTTTCGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (21 bp):
CTTCCTTTTTCTTTCTCTTTT
Found at i:79000396 original size:16 final size:17
Alignment explanation
Indices: 79000369--79000405 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
79000359 TCCTTTCTTC
79000369 TTTCTCTTTTCTTCCTT
1 TTTCTCTTTTCTTCCTT
*
79000386 TTTCT-TTTTCTTTCTT
1 TTTCTCTTTTCTTCCTT
79000402 TTTC
1 TTTC
79000406 GTTTGGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTCTTTTCTTCCTT
Found at i:79002168 original size:4 final size:4
Alignment explanation
Indices: 79002159--79002192 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
79002149 ACAAATTGTT
* *
79002159 TTTA TTTA TTTA TTTA TTCA TTTA TTTG TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
79002193 ACCTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:79004036 original size:45 final size:45
Alignment explanation
Indices: 79003936--79004062 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
79003926 TTTTCTCAAA
* * *
79003936 TCACCGGTATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
79003978 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
79004022 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
79004063 ATCAAGTCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 10 0.14
43 14 0.19
44 8 0.11
45 40 0.55
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:79004397 original size:38 final size:38
Alignment explanation
Indices: 79004341--79004620 Score: 389
Period size: 38 Copynumber: 7.3 Consensus size: 38
79004331 GGCACGAAGG
* * * *
79004341 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
79004379 CCCGGATATAATACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * * *
79004417 CCCGGATATTTTACCAACATGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
79004456 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
79004495 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** **
79004533 CCCGGATATTTTACCAGCACGAAGCCTGCCGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTG-CGGGATTTAA
*
79004572 GCCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
79004611 CCCGGATATA
1 CCCGGATATA
79004621 CATCGAATAT
Statistics
Matches: 213, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
38 134 0.63
39 25 0.12
40 54 0.25
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:79004470 original size:78 final size:75
Alignment explanation
Indices: 79004341--79004620 Score: 380
Period size: 78 Copynumber: 3.6 Consensus size: 75
79004331 GGCACGAAGG
* * * *
79004341 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
79004406 GCGAGATTTAA
66 GCG-GATTTAA
** * * *
79004417 CCCGGATATTTTACCAACATGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGC
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGC
79004482 CTGCGGGATTTAA
64 CTGC-GGATTTAA
**
79004495 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
*
79004560 GCCGGTCTTTAA
66 G-CGG-ATTTAA
*
79004572 GCCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
79004621 CATCGAATAT
Statistics
Matches: 179, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
76 53 0.30
77 15 0.08
78 110 0.61
79 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (75 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCGGATTTAA
Found at i:79004544 original size:116 final size:116
Alignment explanation
Indices: 79004340--79004620 Score: 481
Period size: 116 Copynumber: 2.4 Consensus size: 116
79004330 AGGCACGAAG
* * * *
79004340 GCCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
* *
79004405 TGCGAGATTTAACCCGGATATTTTACCAACATGAAGCCTGCGGGTCTTTAA
66 TGCGAGATTTAACCCGGATATTTTACCAACACGAAGCCTGCCGGTCTTTAA
79004456 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
* *
79004521 TGCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCTGCCGGTCTTTAA
66 TGCGAGATTTAACCCGGATATTTTACCAACACGAAGCCTGCCGGTCTTTAA
*
79004572 GCCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGGATATA
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
79004621 CATCGAATAT
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 156 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (116 bp):
GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
TGCGAGATTTAACCCGGATATTTTACCAACACGAAGCCTGCCGGTCTTTAA
Found at i:79015891 original size:15 final size:15
Alignment explanation
Indices: 79015871--79015901 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79015861 TAAGAGAATG
*
79015871 CGCTAGGAGGGGCTA
1 CGCTAGGAGGGACTA
79015886 CGCTAGGAGGGACTA
1 CGCTAGGAGGGACTA
79015901 C
1 C
79015902 ACCAGGAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.23, G:0.42, T:0.13
Consensus pattern (15 bp):
CGCTAGGAGGGACTA
Found at i:79016591 original size:3 final size:3
Alignment explanation
Indices: 79016583--79016612 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
79016573 TGTAATTTGA
79016583 TCT TCT TCT TCT TCT TCT T-T TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
79016613 TTGCTTTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:79016607 original size:11 final size:11
Alignment explanation
Indices: 79016583--79016614 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
79016573 TGTAATTTGA
79016583 TCTTCTTCTTCT
1 TCTTCTT-TTCT
79016595 TCTTCTTTTCT
1 TCTTCTTTTCT
79016606 TCTTCTTTT
1 TCTTCTTTT
79016615 GCTTTTCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
TCTTCTTTTCT
Found at i:79016607 original size:17 final size:17
Alignment explanation
Indices: 79016585--79016621 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
79016575 TAATTTGATC
79016585 TTCTTCTTCTTCTT-CTT
1 TTCTTCTTCTT-TTGCTT
79016602 TTCTTCTTCTTTTGCTT
1 TTCTTCTTCTTTTGCTT
79016619 TTC
1 TTC
79016622 CTTTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (17 bp):
TTCTTCTTCTTTTGCTT
Found at i:79026321 original size:31 final size:31
Alignment explanation
Indices: 79026286--79026351 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
79026276 AACAGCCTAT
**
79026286 TGACTTAAATAAAAACTTTTGAATAGCTCAG
1 TGACTTAAATAAAAACTTTCAAATAGCTCAG
* *
79026317 TGACTTAAATGAAAACTTTCAAATAGTTCAG
1 TGACTTAAATAAAAACTTTCAAATAGCTCAG
79026348 TGAC
1 TGAC
79026352 CGAATTGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAGCTCAG
Found at i:79030110 original size:20 final size:20
Alignment explanation
Indices: 79030044--79030111 Score: 52
Period size: 21 Copynumber: 3.3 Consensus size: 20
79030034 CTTGGAAAGT
*
79030044 TTTTTGTATTTATAATTAATG
1 TTTTT-TATTTTTAATTAATG
*
79030065 TTTTGATGATATTTT--TTAAT-
1 TTTT--TTAT-TTTTAATTAATG
79030085 TATTTTTATTTTTAATTAATG
1 T-TTTTTATTTTTAATTAATG
79030106 TTTTTT
1 TTTTTT
79030112 TAAAAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 15
0.67 0.05 0.27
Matches are distributed among these distances:
18 4 0.11
19 3 0.08
20 11 0.30
21 13 0.35
22 2 0.05
23 4 0.11
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (20 bp):
TTTTTTATTTTTAATTAATG
Found at i:79031811 original size:27 final size:27
Alignment explanation
Indices: 79031781--79031834 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
79031771 AAAAGATCAT
79031781 GACTAACTAAATAATCCCATAATTGTA
1 GACTAACTAAATAATCCCATAATTGTA
79031808 GACTAACTAAATAATCCCATAATTGTA
1 GACTAACTAAATAATCCCATAATTGTA
79031835 AACTTTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (27 bp):
GACTAACTAAATAATCCCATAATTGTA
Found at i:79036296 original size:39 final size:38
Alignment explanation
Indices: 79036239--79036320 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 38
79036229 GGATCGACCA
***
79036239 TTCTCATCACCAGCTAGCCACTTGCTCTTTTTGGAAGG
1 TTCTCATCACCAGCTAGCCACTTGCTCTTGCCGGAAGG
* * *
79036277 TTCTCATCCACTAGCTAGCCATTTGTTCTTGCCGGAAGG
1 TTCTCAT-CACCAGCTAGCCACTTGCTCTTGCCGGAAGG
79036316 TTCTC
1 TTCTC
79036321 GTCTACCCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
38 7 0.19
39 30 0.81
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (38 bp):
TTCTCATCACCAGCTAGCCACTTGCTCTTGCCGGAAGG
Found at i:79039877 original size:10 final size:9
Alignment explanation
Indices: 79039836--79039895 Score: 52
Period size: 10 Copynumber: 6.6 Consensus size: 9
79039826 ATAACATTAA
79039836 AATATATAT
1 AATATATAT
79039845 AATA-ATAT
1 AATATATAT
* *
79039853 ACACAAATAT
1 A-ATATATAT
79039863 AATATATAT
1 AATATATAT
79039872 ATATATATATT
1 A-ATATATA-T
*
79039883 AAAATA-AT
1 AATATATAT
79039891 AATAT
1 AATAT
79039896 GAAAAAGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 10 0.24
9 14 0.33
10 16 0.38
11 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (9 bp):
AATATATAT
Found at i:79039887 original size:27 final size:28
Alignment explanation
Indices: 79039836--79039895 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
79039826 ATAACATTAA
79039836 AATATATATAATAATATACACAAAT-AT
1 AATATATATAATAATATACACAAATAAT
*
79039863 AATATATAT-ATATATATATTA-AAATAAT
1 AATATATATAATA-ATATA-CACAAATAAT
79039891 AATAT
1 AATAT
79039896 GAAAAAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 3 0.10
27 18 0.62
28 8 0.28
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (28 bp):
AATATATATAATAATATACACAAATAAT
Found at i:79041056 original size:35 final size:35
Alignment explanation
Indices: 79041011--79041079 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
79041001 GGGTGTGTGA
79041011 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
79041046 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
79041080 AGAGGCAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.12, G:0.51, T:0.17
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:79042444 original size:72 final size:72
Alignment explanation
Indices: 79042147--79042540 Score: 538
Period size: 72 Copynumber: 5.4 Consensus size: 72
79042137 TCAACCCACC
** * * *** * *
79042147 TCTCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGCGTGCCTCGAGGCT
1 TCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCT
**
79042212 CAACTCACC
64 CAACTCATT
* *
79042221 TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTC
**
79042286 AACTCACC
65 AACTCATT
* *
79042294 TCTCGCAATATGAGTTGATTTTTGAAAAGCAAAAAATTGAAAATACCTCAATGTGTCTTGAGGCT
1 TCTCGCAATATGAGTTGATTTTTGAAAA-C-AGAAATTGAAATTACCTCAATGTGTCTTGAGGCT
79042359 CAACTCATT
64 CAACTCATT
* *
79042368 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCA
79042433 ACTCATT
66 ACTCATT
79042440 TCTCGCAATATGAGTTGAATTTTTG-AAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTG-ATTTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTC
79042504 AACTCATT
65 AACTCATT
*
79042512 TCTCGCAATATGAGTTGATTCTTTCAAAA
1 TCTCGCAATATGAGTTGATT-TTTGAAAA
79042541 ACATAATAAT
Statistics
Matches: 292, Mismatches: 22, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
71 3 0.01
72 133 0.46
73 74 0.25
74 82 0.28
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (72 bp):
TCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCA
ACTCATT
Found at i:79042697 original size:90 final size:87
Alignment explanation
Indices: 79042465--79042726 Score: 323
Period size: 88 Copynumber: 3.0 Consensus size: 87
79042455 TGAATTTTTG
* * * **
79042465 AAACAGAAATTGAAATTACCTCA-ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAACAGAAATTGAAAATACCTCAGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
79042529 ATTCTTTCAAAAACATAATAATGA
66 ATTTTTTTAAAAACA-GA-AATCA
* *
79042553 AAACAGAAATGGAAAATACCTC-GGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGAAATTGAAAATACCTCAGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
79042617 ATTTTTTTGAAAAACAGAAATCA
66 ATTTTTTT-AAAAACAGAAATCA
**
79042640 AAAGGC-TTAATTGAAAATACCTCAGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAA--CAGAAATTGAAAATACCTCAG-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
79042704 TTGATTTTTTTTAAAACAGAAAT
63 TTGATTTTTTTAAAAACAGAAAT
79042727 TGAAATTACC
Statistics
Matches: 152, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
87 7 0.05
88 77 0.51
89 20 0.13
90 48 0.32
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (87 bp):
AAACAGAAATTGAAAATACCTCAGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTAAAAACAGAAATCA
Found at i:79042771 original size:74 final size:75
Alignment explanation
Indices: 79042648--79042859 Score: 372
Period size: 75 Copynumber: 2.8 Consensus size: 75
79042638 CAAAAGGCTT
*
79042648 AATTGAAAATACCTCAGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAATTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
79042713 TTTAA-AACAGA
64 TTTAACAACAGA
**
79042724 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
79042789 TAACAACAGA
66 TAACAACAGA
79042799 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
79042860 AGAAAACGTA
Statistics
Matches: 130, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
74 48 0.37
75 65 0.50
76 17 0.13
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (75 bp):
AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
TAACAACAGA
Found at i:79043183 original size:72 final size:72
Alignment explanation
Indices: 79042893--79044077 Score: 1960
Period size: 72 Copynumber: 16.4 Consensus size: 72
79042883 TCAACCCACC
* ** * * * * * **
79042893 TCTCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCAGCGTGCCCCGAGGCT
1 TCTCGCAATATGAGTTGA--ATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCT
**
79042958 CAACTCACC
64 CAACTCATT
* * *
79042967 TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
**
79043032 AACTCACC
65 AACTCATT
* * *
79043040 TCTCGCAATATGAGTTGATTTTTGAAAAGCAAAAATTGAAAATACCTCAATGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTGAATTTTGAAAA-CAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
79043105 AACTCATT
65 AACTCATT
*
79043113 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043178 ACTCATT
66 ACTCATT
79043185 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
**
79043250 ACTCACC
66 ACTCATT
79043257 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043322 ACTCATT
66 ACTCATT
* *
79043329 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAAATACCACAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043394 ACTCATT
66 ACTCATT
*
79043401 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043466 ACTCATT
66 ACTCATT
79043473 TCTCGCAATATGAGTTGAATTTTGAAAAC-AAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043537 ACTCATT
66 ACTCATT
*
79043544 TCTCGCAATATGAGTTGAATTTTGAAAAGCAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTGAATTTTGAAAA-CAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
79043609 AACTCATT
65 AACTCATT
*
79043617 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043682 ACTCATT
66 ACTCATT
79043689 TCTCGCAATATGAGTTGAATTTTGAAAAC-AAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043753 ACTCATT
66 ACTCATT
* *
79043760 TCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAATTACCTCCACGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTGAATTTTGAAAA-CAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
79043825 AACTCATT
65 AACTCATT
* * * *
79043833 TCTTGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACTTTAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043898 ACTCATT
66 ACTCATT
79043905 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
79043970 ACTCATT
66 ACTCATT
* *
79043977 TCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAATTACCTCCACGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTGAATTTTGAAAA-CAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
79044042 AACTCATT
65 AACTCATT
79044050 TCTCGCAATATGAGTTGAATTTTTGAAA
1 TCTCGCAATATGAGTTGAA-TTTTGAAA
79044078 CATAAATAAA
Statistics
Matches: 1059, Mismatches: 44, Indels: 16
0.95 0.04 0.01
Matches are distributed among these distances:
71 138 0.13
72 568 0.54
73 327 0.31
74 26 0.02
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
TCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
ACTCATT
Found at i:79046295 original size:26 final size:26
Alignment explanation
Indices: 79046265--79046321 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
79046255 ATTTTTTTGT
*
79046265 TTTTTTCTTGTCCTTT-TTTTCTTTTTG
1 TTTTTTCTTGT--TTTCTTTTCTTTTTC
*
79046292 TTTTTTTTTGTTTTCTTTTCTTTTTC
1 TTTTTTCTTGTTTTCTTTTCTTTTTC
79046318 TTTT
1 TTTT
79046322 CATGACTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 3 0.11
26 14 0.52
27 10 0.37
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (26 bp):
TTTTTTCTTGTTTTCTTTTCTTTTTC
Found at i:79046322 original size:11 final size:11
Alignment explanation
Indices: 79046281--79046321 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
79046271 CTTGTCCTTT
79046281 TTTTCTTTTTG
1 TTTTCTTTTTG
79046292 TTTT-TTTTTG
1 TTTTCTTTTTG
79046302 TTTTCTTTTCT-
1 TTTTCTTTT-TG
79046313 TTTTCTTTT
1 TTTTCTTTT
79046322 CATGACTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.36
11 17 0.61
12 1 0.04
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTG
Found at i:79051942 original size:35 final size:35
Alignment explanation
Indices: 79051897--79051965 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
79051887 GGGTGTGTGA
79051897 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
79051932 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
79051966 AGAGGCAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.12, G:0.51, T:0.17
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:79053988 original size:29 final size:30
Alignment explanation
Indices: 79053952--79054022 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
79053942 AATAAAAAAA
*
79053952 TTCATGTATAAAATTGCACA-AAATCAAAG
1 TTCATGTATAAAATTGCACATAAACCAAAG
*
79053981 TTCATGTATATAATTGCACATTAAACCAAAG
1 TTCATGTATAAAATTGCACA-TAAACCAAAG
*
79054012 TTGATGTATAA
1 TTCATGTATAA
79054023 TTTTGATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 19 0.53
31 17 0.47
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (30 bp):
TTCATGTATAAAATTGCACATAAACCAAAG
Found at i:79055625 original size:14 final size:15
Alignment explanation
Indices: 79055590--79055630 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
79055580 ACAAAATCCA
79055590 TTGCTTTTCTTTTTCC
1 TTGCTTTT-TTTTTCC
*
79055606 CT-CTTTTTTTTT-C
1 TTGCTTTTTTTTTCC
79055619 TTGCTTTTTTTT
1 TTGCTTTTTTTT
79055631 ACTTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 2 0.09
14 14 0.64
15 5 0.23
16 1 0.05
ACGTcount: A:0.00, C:0.20, G:0.05, T:0.76
Consensus pattern (15 bp):
TTGCTTTTTTTTTCC
Found at i:79061781 original size:44 final size:45
Alignment explanation
Indices: 79061699--79061787 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 45
79061689 AGAACAGAAA
* * * *
79061699 TGAGCCATGTAAGTCCATGTTAGAAATATGGCTTTGGAGATAGGAT
1 TGAGCCATGTAAGCCCATATTA-AAATATGGCATTGGAGACAGGAT
*
79061745 TGAGCCATGTAAGCCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGCCCATATTAAAATATGGCATTGGAGACAGGA
79061788 ATAATTCATG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 19 0.50
46 19 0.50
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGCCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:79065166 original size:32 final size:32
Alignment explanation
Indices: 79065130--79065190 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
79065120 CTCGCAACTT
* **
79065130 GCTTGCATGTAGCTTGCAGTTCACAGTTCGCA
1 GCTTGCATGCAGCTCACAGTTCACAGTTCGCA
*
79065162 GCTTGCATGCAGCTCATAGTTCACAGTTC
1 GCTTGCATGCAGCTCACAGTTCACAGTTC
79065191 AGTGTCAGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (32 bp):
GCTTGCATGCAGCTCACAGTTCACAGTTCGCA
Found at i:79065862 original size:24 final size:24
Alignment explanation
Indices: 79065835--79065884 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
79065825 AAGATGTGAT
79065835 TTAAGTCCAACAATTTTGTCAAAA
1 TTAAGTCCAACAATTTTGTCAAAA
*
79065859 TTAAGTCCAACAGTTTTGTCAAAA
1 TTAAGTCCAACAATTTTGTCAAAA
79065883 TT
1 TT
79065885 TGCTGGTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (24 bp):
TTAAGTCCAACAATTTTGTCAAAA
Found at i:79069991 original size:17 final size:17
Alignment explanation
Indices: 79069969--79070005 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
79069959 TAAATTATCC
79069969 ATTTTATTTTTATTTTA
1 ATTTTATTTTTATTTTA
79069986 ATTTTATTTTTATTTTA
1 ATTTTATTTTTATTTTA
79070003 ATT
1 ATT
79070006 AAGTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTTATTTTTATTTTA
Found at i:79070600 original size:2 final size:2
Alignment explanation
Indices: 79070593--79070619 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79070583 TTTTAATGAT
79070593 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
79070620 CCTTAGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79076324 original size:3 final size:3
Alignment explanation
Indices: 79076316--79076349 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
79076306 AATGTCCAAC
*
79076316 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
79076350 GCTTCTTCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:79079501 original size:17 final size:17
Alignment explanation
Indices: 79079476--79079514 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
79079466 GGCGGTAGGC
*
79079476 GGAGGAAAGTAA-ACGGA
1 GGAGAAAAGTAAGA-GGA
79079493 GGAGAAAAGTAAGAGGA
1 GGAGAAAAGTAAGAGGA
79079510 GGAGA
1 GGAGA
79079515 CAACCGGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.49, C:0.03, G:0.44, T:0.05
Consensus pattern (17 bp):
GGAGAAAAGTAAGAGGA
Found at i:79080889 original size:15 final size:13
Alignment explanation
Indices: 79080847--79080883 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
79080837 AATTTATAGA
79080847 AATTTTAAATTTT
1 AATTTTAAATTTT
*
79080860 ATTTTTCAAATTTT
1 AATTTT-AAATTTT
79080874 AATTTTAAAT
1 AATTTTAAAT
79080884 ATTTTACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (13 bp):
AATTTTAAATTTT
Found at i:79083216 original size:21 final size:19
Alignment explanation
Indices: 79083182--79083240 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 19
79083172 TAACAAGAAA
*
79083182 TAAAAAT-ATATAAATTTT
1 TAAAAATAAAATAAATTTT
79083200 TAAAATATCAAAATAAATAATTT
1 TAAAA-AT-AAAATAAAT--TTT
*
79083223 TAAAAATATAATAAATTT
1 TAAAAATAAAATAAATTT
79083241 ATTTTTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
18 5 0.15
19 4 0.12
21 15 0.44
22 2 0.06
23 8 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAAATAAAATAAATTTT
Found at i:79083238 original size:25 final size:25
Alignment explanation
Indices: 79083181--79083238 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
79083171 CTAACAAGAA
* *
79083181 ATAAAAATATATAAATTTTTAAAAT
1 ATAAAAATAAATAAATTTTAAAAAT
*
79083206 ATCAAAATAAAT-AATTTTAAAAAT
1 ATAAAAATAAATAAATTTTAAAAAT
79083230 ATAATAAAT
1 ATAA-AAAT
79083239 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (25 bp):
ATAAAAATAAATAAATTTTAAAAAT
Found at i:79083258 original size:6 final size:6
Alignment explanation
Indices: 79083247--79083276 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
79083237 ATTTATTTTT
79083247 TATTAA TATTAA TATTAA TATTAA TATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA
79083277 ATAAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TATTAA
Found at i:79083285 original size:18 final size:18
Alignment explanation
Indices: 79083247--79083281 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79083237 ATTTATTTTT
*
79083247 TATTAATATTAATATTAA
1 TATTAATATTAATATAAA
79083265 TATTAATATTAA-ATAAA
1 TATTAATATTAATATAAA
79083282 ATATAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTAATATTAATATAAA
Found at i:79083752 original size:10 final size:10
Alignment explanation
Indices: 79083737--79083767 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
79083727 TTTGAAAATA
79083737 TTTATGTATT
1 TTTATGTATT
79083747 TTTATGTATT
1 TTTATGTATT
*
79083757 TTTATATATT
1 TTTATGTATT
79083767 T
1 T
79083768 ATTTAAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (10 bp):
TTTATGTATT
Found at i:79084260 original size:16 final size:17
Alignment explanation
Indices: 79084239--79084274 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
79084229 AGGTGTCCAG
*
79084239 CAATGGTA-ATTTTTTT
1 CAATGGTACAATTTTTT
79084255 CAATGGTACAATTTTTT
1 CAATGGTACAATTTTTT
79084272 CAA
1 CAA
79084275 ACTGGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (17 bp):
CAATGGTACAATTTTTT
Found at i:79085311 original size:10 final size:10
Alignment explanation
Indices: 79085296--79085321 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79085286 TTTGGTTAAG
79085296 TGAATTTGCA
1 TGAATTTGCA
79085306 TGAATTTGCA
1 TGAATTTGCA
79085316 TGAATT
1 TGAATT
79085322 AAGAGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (10 bp):
TGAATTTGCA
Found at i:79085931 original size:18 final size:19
Alignment explanation
Indices: 79085902--79085937 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
79085892 GTAAAAATTT
*
79085902 TGAAATTTAGGGATTTAAG
1 TGAAATTTAGGGAGTTAAG
79085921 TGAAA-TTAGGGAGTTAA
1 TGAAATTTAGGGAGTTAA
79085938 ATTTAGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (19 bp):
TGAAATTTAGGGAGTTAAG
Found at i:79087720 original size:18 final size:20
Alignment explanation
Indices: 79087680--79087724 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
79087670 TTTATTATTA
*
79087680 TATTATTTATTTTCACTATAT
1 TATTA-TTATTTTCACTACAT
79087701 TATTATTATTTTCA-T-CAT
1 TATTATTATTTTCACTACAT
79087719 TATTAT
1 TATTAT
79087725 ACATATATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 1 0.04
20 9 0.39
21 5 0.22
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTATTATTTTCACTACAT
Found at i:79087722 original size:21 final size:21
Alignment explanation
Indices: 79087663--79087724 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
79087653 ATATTGTTAC
*
79087663 TATTATATTT-ATTATTA-TAT
1 TATTAT-TTTCATCATTATTAT
79087683 TATTTATTTTCA-C-TATATTAT
1 TA-TTATTTTCATCAT-TATTAT
79087704 TATTATTTTCATCATTATTAT
1 TATTATTTTCATCATTATTAT
79087725 ACATATATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
19 1 0.03
20 16 0.46
21 17 0.49
22 1 0.03
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (21 bp):
TATTATTTTCATCATTATTAT
Found at i:79089704 original size:21 final size:20
Alignment explanation
Indices: 79089662--79089704 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
79089652 ATTTAAAATG
* * *
79089662 ATGATTTGAATGATGTTTTA
1 ATGATGTGAATGATGATATA
79089682 ATGATGTGAAATGATGATATA
1 ATGATGTG-AATGATGATATA
79089703 AT
1 AT
79089705 TGTAGTAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (20 bp):
ATGATGTGAATGATGATATA
Found at i:79091186 original size:25 final size:26
Alignment explanation
Indices: 79091157--79091227 Score: 99
Period size: 25 Copynumber: 2.7 Consensus size: 26
79091147 AGAATACTAG
*
79091157 ATTAAAAATATGTACATAATATAG-T
1 ATTAAAAATATATACATAATATAGTT
* *
79091182 GTTAAAAATACATACATAATATAGTT
1 ATTAAAAATATATACATAATATAGTT
79091208 ATTAAAAAATATATACATAA
1 ATT-AAAAATATATACATAA
79091228 AAAAAATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 21 0.54
26 3 0.08
27 15 0.38
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (26 bp):
ATTAAAAATATATACATAATATAGTT
Found at i:79091223 original size:27 final size:25
Alignment explanation
Indices: 79091149--79091227 Score: 97
Period size: 25 Copynumber: 3.1 Consensus size: 25
79091139 TAAAACATAG
*
79091149 AATACTAG-ATTAAAAATATGTACAT
1 AATA-TAGTATTAAAAATATATACAT
* *
79091174 AATATAGTGTTAAAAATACATACAT
1 AATATAGTATTAAAAATATATACAT
79091199 AATATAGTTATTAAAAAATATATACAT
1 AATATAG-TATT-AAAAATATATACAT
79091226 AA
1 AA
79091228 AAAAAATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 3 0.07
25 25 0.54
26 3 0.07
27 15 0.33
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.33
Consensus pattern (25 bp):
AATATAGTATTAAAAATATATACAT
Found at i:79091331 original size:24 final size:23
Alignment explanation
Indices: 79091303--79091358 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
79091293 ATATATACGT
79091303 TATATATATAAAAAATGTATACATAA
1 TATATAT-TAAAAAAT-T-TACATAA
*
79091329 TATAGTATTAAAATATTTACATAA
1 TATA-TATTAAAAAATTTACATAA
79091353 TATATA
1 TATATA
79091359 CATATTAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 2 0.07
24 11 0.39
25 1 0.04
26 11 0.39
27 3 0.11
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (23 bp):
TATATATTAAAAAATTTACATAA
Found at i:79091434 original size:23 final size:22
Alignment explanation
Indices: 79091408--79091470 Score: 76
Period size: 23 Copynumber: 2.9 Consensus size: 22
79091398 TATTACATAA
* *
79091408 ATATATACATATATATATTAAAG
1 ATATATACATATATA-ATAAAAC
79091431 ATATATACATATATAATAAAAC
1 ATATATACATATATAATAAAAC
79091453 ATATATTA-ATAT-TAATAA
1 ATATA-TACATATATAATAA
79091471 TAATAATAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.16
22 14 0.38
23 17 0.46
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (22 bp):
ATATATACATATATAATAAAAC
Found at i:79091450 original size:21 final size:23
Alignment explanation
Indices: 79091408--79091458 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
79091398 TATTACATAA
79091408 ATATATACATATATATATTAAAG
1 ATATATACATATATATATTAAAG
* *
79091431 ATATATACATATATA-ATAAAAC
1 ATATATACATATATATATTAAAG
79091453 ATATAT
1 ATATAT
79091459 TAATATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (23 bp):
ATATATACATATATATATTAAAG
Found at i:79091532 original size:24 final size:22
Alignment explanation
Indices: 79091482--79091550 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 22
79091472 AATAATAAGG
79091482 ATAATATAAAAATATATACATAAA
1 ATAATATAAAAATATAT--ATAAA
*
79091506 ATAGTATAAAAATATATATAACTA
1 ATAATATAAAAATATATATAA--A
*
79091530 ATAATATTTAAAATATATATA
1 ATAATA-TAAAAATATATATA
79091551 TACATGATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.10
24 22 0.56
25 13 0.33
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (22 bp):
ATAATATAAAAATATATATAAA
Found at i:79091569 original size:27 final size:27
Alignment explanation
Indices: 79091493--79091575 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
79091483 TAATATAAAA
*
79091493 ATATATACATAAAATAGTATAAAAATAT
1 ATATATACATAATATA-TATAAAAATAT
*
79091521 ATATA-AC-TAATA-ATATTTAAAATAT
1 ATATATACATAATATATA-TAAAAATAT
* *
79091546 ATATATACATGATATATATAAAAACAT
1 ATATATACATAATATATATAAAAATAT
79091573 ATA
1 ATA
79091576 CGATATATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
24 2 0.04
25 14 0.30
26 6 0.13
27 16 0.35
28 8 0.17
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (27 bp):
ATATATACATAATATATATAAAAATAT
Found at i:79091736 original size:19 final size:19
Alignment explanation
Indices: 79091688--79091726 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
79091678 ACGAGTACTA
*
79091688 ATAATATTAAT-AATATAT
1 ATAATAATAATAAATATAT
79091706 ATAATAATAATAAATATAT
1 ATAATAATAATAAATATAT
79091725 AT
1 AT
79091727 GCATATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
ATAATAATAATAAATATAT
Found at i:79091788 original size:26 final size:26
Alignment explanation
Indices: 79091759--79091816 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
79091749 ACATTTAAAA
*
79091759 AATATAACTAAAT-ATAAT-ATAATAAT
1 AATATAA--AAATAATAATGATAACAAT
*
79091785 AATATAAAAATAATAGTGATAACAAT
1 AATATAAAAATAATAATGATAACAAT
79091811 AATATA
1 AATATA
79091817 TATAACAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 4 0.14
25 4 0.14
26 20 0.71
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (26 bp):
AATATAAAAATAATAATGATAACAAT
Found at i:79091811 original size:15 final size:14
Alignment explanation
Indices: 79091769--79091832 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 14
79091759 AATATAACTA
79091769 AATATAATATAATAAT
1 AATATAA-A-AATAAT
79091785 AATATAAAAATAAT
1 AATATAAAAATAAT
* *
79091799 AGTGATAACAATAAT
1 AAT-ATAAAAATAAT
79091814 ATATATAACAAA-AAT
1 A-ATATAA-AAATAAT
79091829 AATA
1 AATA
79091833 ATATGTACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
14 11 0.27
15 20 0.49
16 10 0.24
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (14 bp):
AATATAAAAATAAT
Found at i:79091926 original size:21 final size:20
Alignment explanation
Indices: 79091884--79091941 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
79091874 AATGTTAAAA
*
79091884 TAAAATAATAAGTAACAATAG
1 TAAAATAATAAGT-ATAATAG
79091905 TGAAAATAATAAGTATAATAG
1 T-AAAATAATAAGTATAATAG
79091926 TAAATATAATAA-TATA
1 TAAA-ATAATAAGTATA
79091942 TAATAATACT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.21
21 15 0.44
22 12 0.35
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (20 bp):
TAAAATAATAAGTATAATAG
Found at i:79091946 original size:22 final size:21
Alignment explanation
Indices: 79091884--79091946 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
79091874 AATGTTAAAA
*
79091884 TAAAATAATAAGTA-ACAATAG
1 TAAAATAATAA-TATATAATAG
*
79091905 TGAAAATAATAA-GTATAATAG
1 T-AAAATAATAATATATAATAG
79091926 TAAATATAATAATATATAATA
1 TAAA-ATAATAATATATAATA
79091947 ATACTATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
20 3 0.09
21 15 0.43
22 17 0.49
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (21 bp):
TAAAATAATAATATATAATAG
Found at i:79091982 original size:14 final size:14
Alignment explanation
Indices: 79091929--79091974 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
79091919 ATAATAGTAA
79091929 ATATAATAA-TATAT
1 ATATAA-AAGTATAT
* *
79091943 A-ATAATACTATAT
1 ATATAAAAGTATAT
79091956 ATATAAAAGTATAT
1 ATATAAAAGTATAT
79091970 ATATA
1 ATATA
79091975 CACATATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 1 0.04
13 10 0.37
14 16 0.59
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (14 bp):
ATATAAAAGTATAT
Found at i:79092007 original size:21 final size:21
Alignment explanation
Indices: 79091968--79092015 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
79091958 ATAAAAGTAT
79091968 ATATATACACATATAATAA-A
1 ATATATACACATATAATAACA
79091988 ATATATACTAC-TATTAATAACA
1 ATATATAC-ACATA-TAATAACA
79092010 A-ATATA
1 ATATATA
79092016 ATAGGGGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 10 0.40
21 13 0.52
22 2 0.08
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATATACACATATAATAACA
Found at i:79092211 original size:20 final size:20
Alignment explanation
Indices: 79092182--79092219 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
79092172 ATTAATTGTA
79092182 AAAAAAATACTAATAATAGT
1 AAAAAAATACTAATAATAGT
*
79092202 AAAAATATACTAATAATA
1 AAAAAAATACTAATAATA
79092220 ATAATGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAAAAATACTAATAATAGT
Found at i:79092261 original size:15 final size:14
Alignment explanation
Indices: 79092234--79092277 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
79092224 TGATAATAGT
*
79092234 AAATATAATAATAA
1 AAATATAAAAATAA
79092248 AAATATTAAAAATAA
1 AAATA-TAAAAATAA
*
79092263 AAATGGTAAAAATAA
1 AAAT-ATAAAAATAA
79092278 TATAAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (14 bp):
AAATATAAAAATAA
Found at i:79092750 original size:30 final size:28
Alignment explanation
Indices: 79092707--79092762 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
79092697 TTTTTTTTTT
79092707 AAAAAATCACTTTCTCATTTGTTTTTAA
1 AAAAAATCACTTTCTCATTTGTTTTTAA
* *
79092735 AAAAAACTCAGCTTTCTCTTTTTTTTTT
1 AAAAAA-TCA-CTTTCTCATTTGTTTTT
79092763 CTCTGCAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.25
29 3 0.12
30 15 0.62
ACGTcount: A:0.30, C:0.16, G:0.04, T:0.50
Consensus pattern (28 bp):
AAAAAATCACTTTCTCATTTGTTTTTAA
Found at i:79094160 original size:49 final size:49
Alignment explanation
Indices: 79094106--79094207 Score: 114
Period size: 49 Copynumber: 2.1 Consensus size: 49
79094096 TCACGAGTTG
* * *
79094106 AAGTATAACTAAAGCTCTCAATTGATGGTGGTTATGTAATCATGGGTTT
1 AAGTATAACTAAAGCCCCCAATTGATGGTGGTTATGTAATCATGGGTTC
* ** * * **
79094155 AAGTATATCTCGAGCCCCCAGTTGGTGGTGGTTATGTGGTCATGGGTTC
1 AAGTATAACTAAAGCCCCCAATTGATGGTGGTTATGTAATCATGGGTTC
79094204 AAGT
1 AAGT
79094208 TTAATGGCAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (49 bp):
AAGTATAACTAAAGCCCCCAATTGATGGTGGTTATGTAATCATGGGTTC
Found at i:79100462 original size:17 final size:16
Alignment explanation
Indices: 79100442--79100493 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
79100432 ACAATTTCAT
79100442 TAATGTTAAAATTTGTA
1 TAAT-TTAAAATTTGTA
* *
79100459 TAATATAAATTATTG-A
1 TAATTTAAAAT-TTGTA
79100475 TAGATTTAAAATTTGTA
1 TA-ATTTAAAATTTGTA
79100492 TA
1 TA
79100494 TATAATATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
16 11 0.39
17 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (16 bp):
TAATTTAAAATTTGTA
Found at i:79107833 original size:25 final size:25
Alignment explanation
Indices: 79107799--79107854 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
79107789 CTGTGTATCT
79107799 CGTG-TTGTGTTTGTGTTATTTGAC
1 CGTGTTTGTGTTTGTGTTATTTGAC
79107823 CGTGTTTGTGTTTGTGTTATTTGAC
1 CGTGTTTGTGTTTGTGTTATTTGAC
79107848 CGTGTTT
1 CGTGTTT
79107855 AAAGGGTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 4 0.13
25 27 0.87
ACGTcount: A:0.07, C:0.09, G:0.29, T:0.55
Consensus pattern (25 bp):
CGTGTTTGTGTTTGTGTTATTTGAC
Found at i:79108933 original size:27 final size:28
Alignment explanation
Indices: 79108903--79108960 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
79108893 CCTGCAAATC
79108903 CATTGGAAT-TGAAAAGAAA-TTTATTTG
1 CATT-GAATATGAAAAGAAATTTTATTTG
***
79108930 CATTGAATATGGTCAGAAATTTTATTTG
1 CATTGAATATGAAAAGAAATTTTATTTG
79108958 CAT
1 CAT
79108961 ATGATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 11 0.42
28 11 0.42
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (28 bp):
CATTGAATATGAAAAGAAATTTTATTTG
Found at i:79110231 original size:30 final size:29
Alignment explanation
Indices: 79110122--79110263 Score: 124
Period size: 31 Copynumber: 4.7 Consensus size: 29
79110112 TTGGAAGACG
* *
79110122 TAATTAAAATTTTTAAAAATTATGGAGGATC
1 TAATTAAAATTTTCAAAAATTTTGGAGG--C
* * *
79110153 TAATTAAAATCTTCTAAAATTTTGGAAAGC
1 TAATTAAAATTTTCAAAAATTTTGG-AGGC
* * *
79110183 TTAATGAGAATTTCCAAAAATTTTGGAGGTC
1 -TAATTAAAATTTTCAAAAATTTTGGAGG-C
* *
79110214 TAATTCAAATTTTCAAAAAATTTAGGA-GC
1 TAATTAAAATTTTC-AAAAATTTTGGAGGC
*
79110243 TAATTAAAATTTTAAAAAATT
1 TAATTAAAATTTTCAAAAATT
79110264 AACAAAAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
28 7 0.08
29 13 0.15
30 14 0.16
31 53 0.60
32 2 0.02
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.37
Consensus pattern (29 bp):
TAATTAAAATTTTCAAAAATTTTGGAGGC
Found at i:79112186 original size:32 final size:31
Alignment explanation
Indices: 79112133--79112205 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
79112123 TCAATAAATA
79112133 AAAAAT-ATATAAAAGTATTAAAAATTAAA-TT
1 AAAAATAATATAAAAGTATTAAAAA--AAATTT
* *
79112164 -AAAATAATATAAATATTCTTAAAAAAAATTT
1 AAAAATAATATAAA-AGTATTAAAAAAAATTT
79112195 AAAAATAATAT
1 AAAAATAATAT
79112206 GGGCGAGCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
30 8 0.22
31 9 0.25
32 19 0.53
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (31 bp):
AAAAATAATATAAAAGTATTAAAAAAAATTT
Found at i:79113732 original size:15 final size:16
Alignment explanation
Indices: 79113693--79113733 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
79113683 ATATATTAAG
79113693 TTATATAAATTTGAAAA
1 TTATATAAA-TTGAAAA
79113710 TTCA-ATAAA-TGAAAA
1 TT-ATATAAATTGAAAA
79113725 TTATATAAA
1 TTATATAAA
79113734 ATTAAATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.05
15 13 0.59
17 7 0.32
18 1 0.05
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (16 bp):
TTATATAAATTGAAAA
Found at i:79119953 original size:44 final size:45
Alignment explanation
Indices: 79119905--79120004 Score: 123
Period size: 44 Copynumber: 2.2 Consensus size: 45
79119895 CTTTGACATT
* *
79119905 GACTTACATGAATTATTCCTGTCTCCAATA-CCATA-TATAATATG
1 GACTTACATGAATCAATCCTGTCTCCAA-AGCCATATTATAATATG
** *
79119949 GACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAATATG
79119995 GACTTACATG
1 GACTTACATG
79120005 GCTCATTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.02
44 29 0.60
46 18 0.38
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (45 bp):
GACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAATATG
Found at i:79120005 original size:46 final size:44
Alignment explanation
Indices: 79119921--79120009 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 44
79119911 CATGAATTAT
79119921 TCCTGTCTCCAATACCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAATACCATATATAATATGGACTTACATGGCTCAA
*
79119965 TCCTGTCTCCAA-AGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAATA-CCATA--TATAATATGGACTTACATGGCTCA
79120010 TTTTTGTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.02
44 17 0.41
46 23 0.56
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAATACCATATATAATATGGACTTACATGGCTCAA
Found at i:79123500 original size:44 final size:45
Alignment explanation
Indices: 79123412--79123500 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
79123402 AGAACAAAAA
*
79123412 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
79123458 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
79123501 ATAATTCATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:79123511 original size:44 final size:45
Alignment explanation
Indices: 79123414--79123516 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 45
79123404 AACAAAAATG
* * *
79123414 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATA
*
79123460 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATA
**
79123504 ATTCATGTAAGTC
1 AGCCATGTAAGTC
79123517 AATGTCAAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 32 0.63
46 19 0.37
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATA
Found at i:79130624 original size:44 final size:45
Alignment explanation
Indices: 79130573--79130675 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
79130563 TGTCTTTGAC
* * * *
79130573 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
79130617 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
79130663 ATGGACTTACATG
1 ATGGACTTACATG
79130676 GCTCATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:79130674 original size:46 final size:44
Alignment explanation
Indices: 79130595--79130680 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
79130585 GAATTATTCT
*
79130595 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCC
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
*
79130639 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
79130681 TTTTTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
Found at i:79135447 original size:16 final size:15
Alignment explanation
Indices: 79135421--79135452 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
79135411 TACACTCATT
79135421 TATATTATTTTTTAA
1 TATATTATTTTTTAA
79135436 TATATATATTTTTTAA
1 TATAT-TATTTTTTAA
79135452 T
1 T
79135453 TTAATATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TATATTATTTTTTAA
Found at i:79147510 original size:34 final size:34
Alignment explanation
Indices: 79147464--79147530 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
79147454 GTTCTCTCTC
* *
79147464 TTTTGTTTTAAGAACTTTTAGTTACTGAATCTGT
1 TTTTCTTTTAAGAACTTTTAGTTACCGAATCTGT
79147498 TTTTCTTTTAAGAACTTTTAGTTACCGAATCTG
1 TTTTCTTTTAAGAACTTTTAGTTACCGAATCTG
79147531 ATTCAATTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.12, G:0.13, T:0.51
Consensus pattern (34 bp):
TTTTCTTTTAAGAACTTTTAGTTACCGAATCTGT
Found at i:79153327 original size:12 final size:11
Alignment explanation
Indices: 79153308--79153338 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
79153298 TGTATAACTT
79153308 TTATTTTATTA
1 TTATTTTATTA
79153319 TTAATTTTATTA
1 TT-ATTTTATTA
79153331 TTATTTTA
1 TTATTTTA
79153339 AAAGAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:79153328 original size:17 final size:17
Alignment explanation
Indices: 79153306--79153339 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
79153296 ATTGTATAAC
79153306 TTTTATT-TTATTATTAA
1 TTTTATTATTATT-TTAA
79153323 TTTTATTATTATTTTAA
1 TTTTATTATTATTTTAA
79153340 AAGAATTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATTATTATTTTAA
Found at i:79171182 original size:42 final size:42
Alignment explanation
Indices: 79171063--79171184 Score: 190
Period size: 42 Copynumber: 2.8 Consensus size: 42
79171053 CGCCATTGTC
* * *
79171063 GAGGCGCCAAAGAAAGTGGAAGAAGCCATTGTTGACGCTCCAAAG
1 GAGGCCCCAAAGAAA---GAAGAAGTCATTGTTGAGGCTCCAAAG
79171108 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGCTCCAAAG
1 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGCTCCAAAG
79171150 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGC
1 GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGC
79171185 AAAAACAATG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
42 60 0.81
45 14 0.19
ACGTcount: A:0.37, C:0.19, G:0.30, T:0.14
Consensus pattern (42 bp):
GAGGCCCCAAAGAAAGAAGAAGTCATTGTTGAGGCTCCAAAG
Found at i:79174953 original size:33 final size:33
Alignment explanation
Indices: 79174910--79174978 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
79174900 AAAGATCAAA
79174910 TTTTAAAACTTGAAAAGATTTAATATACTAAAT
1 TTTTAAAACTTGAAAAGATTTAATATACTAAAT
*
79174943 TTTTAGAACTTGAAAAGATTTAATATACTAAAT
1 TTTTAAAACTTGAAAAGATTTAATATACTAAAT
79174976 TTT
1 TTT
79174979 AAAGAAAACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (33 bp):
TTTTAAAACTTGAAAAGATTTAATATACTAAAT
Found at i:79176976 original size:51 final size:52
Alignment explanation
Indices: 79176844--79176980 Score: 138
Period size: 51 Copynumber: 2.7 Consensus size: 52
79176834 TGTGTTGTTA
* * * *
79176844 GACAAAATATGTAAAT-GTTATGAGCTAAATTTGTTAAATCAAGACCAAATT
1 GACACAATATGTAAATATTTTTGGGCTAAATTTGTTAAATCAAGACCAAATT
* * * * *
79176895 GATAGAATATGTAAATATTTTTGGGTTAAATTTGTTAAA-CAATACCAATTT
1 GACACAATATGTAAATATTTTTGGGCTAAATTTGTTAAATCAAGACCAAATT
*
79176946 GACACAATGTGTAAA-A-TTTTGAGGACTAAATTTGT
1 GACACAATATGTAAATATTTTTG-GG-CTAAATTTGT
79176981 CATTACACCA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
49 5 0.07
50 3 0.04
51 45 0.63
52 18 0.25
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (52 bp):
GACACAATATGTAAATATTTTTGGGCTAAATTTGTTAAATCAAGACCAAATT
Found at i:79180676 original size:15 final size:14
Alignment explanation
Indices: 79180652--79180681 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
79180642 AACACAAATA
79180652 ATAAAAAACAACTG
1 ATAAAAAACAACTG
79180666 ATAAAAGAACAACTG
1 ATAAAA-AACAACTG
79180681 A
1 A
79180682 AACCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (14 bp):
ATAAAAAACAACTG
Found at i:79183080 original size:28 final size:28
Alignment explanation
Indices: 79183048--79183107 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
79183038 CATATTAATA
79183048 GGGTATAGGAAAAGTCTCATAACTTATG
1 GGGTATAGGAAAAGTCTCATAACTTATG
* * *
79183076 GGGTATAGGAAGAGTTTTATAACTTATG
1 GGGTATAGGAAAAGTCTCATAACTTATG
79183104 GGGT
1 GGGT
79183108 TGATAATGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.32
Consensus pattern (28 bp):
GGGTATAGGAAAAGTCTCATAACTTATG
Found at i:79186582 original size:510 final size:510
Alignment explanation
Indices: 79185623--79186644 Score: 1909
Period size: 510 Copynumber: 2.0 Consensus size: 510
79185613 TCTTTGAGGC
*
79185623 CCCATCTTAGTTCTATGTGGTGGAGCAATTGGAACATATACGGCACATCCAAATGTTCTTAGATG
1 CCCATCTTAGTTCTATGTGGTGGAGAAATTGGAACATATACGGCACATCCAAATGTTCTTAGATG
*
79185688 GGAAATATTTGGTTCCTAACCATGAACTATTTGTAAGGAGGAGACTTTATGATAACTTGTTGTCC
66 GGAAATATTTGGTTCCTAACCATGAACTATTTGTAAGGAGGAGACTTTATGATAACTTGTTGGCC
*
79185753 TGATGCGAATTAATGCAGCTGCATGTAAAATTGCATGCCCCCAAGCAGTGATTGGGAGTTTTGAC
131 TGATGCGAATTAATGCAGCTGCATGTAAAATTGCATGCCCCCAAGCAGTGATTGGGAGTTTTAAC
79185818 CTCATAAGTAATGGCATTGCTATCAATTGAAGTCGTTTTATTAAAGATTCTGCTAGACCATTTTG
196 CTCATAAGTAATGGCATTGCTATCAATTGAAGTCGTTTTATTAAAGATTCTGCTAGACCATTTTG
* **
79185883 TGTGTGAACATGAGCTACAAGATGTTCAACACTTATTCCAATGGACATGCAATAGTTATTAAAAG
261 TGTATGAACATGAGCTACAAGATGTTCAACACTTATTCCAATCAACATGCAATAGTTATTAAAAG
79185948 ACTGAGAAGTAAATTCACCAGCATTATCAAGACGGATGGTCTTAATAGGAAAATCTGGGAAATAG
326 ACTGAGAAGTAAATTCACCAGCATTATCAAGACGGATGGTCTTAATAGGAAAATCTGGGAAATAG
*
79186013 GCTCGTAATCGAATCAATTGAGCAAGCAATCTCGCAAACGCCAGGTTGCGAGTTGATAACAAAGA
391 GCTCGTAATCGAATCAATTGAGCAAGCAATCTCGCAAACACCAGGTTGCGAGTTGATAACAAAGA
79186078 TACATGAGACCATCTACTCGATGCATCGATTAAAACCATAAAGTACCTAAATGGT
456 TACATGAGACCATCTACTCGATGCATCGATTAAAACCATAAAGTACCTAAATGGT
*
79186133 CCCATCTTAGTTCTATGTGGTGGAGAAATTGTAACATATACGGCACATCCAAATGTTCTTAGATG
1 CCCATCTTAGTTCTATGTGGTGGAGAAATTGGAACATATACGGCACATCCAAATGTTCTTAGATG
* *
79186198 GGAAATATTTGGTTCCTGACCATGAACTATTTGTAAGGGGGAGACTTTATGATAACTTGTTGGCC
66 GGAAATATTTGGTTCCTAACCATGAACTATTTGTAAGGAGGAGACTTTATGATAACTTGTTGGCC
79186263 TGATGCGAATTAATGCAGCTGCATGTAAAATTGCATGCCCCCAAGCAGTGATTGGGAGTTTTAAC
131 TGATGCGAATTAATGCAGCTGCATGTAAAATTGCATGCCCCCAAGCAGTGATTGGGAGTTTTAAC
* *
79186328 TTCATAAGTAATGGCCTTGCTATCAATTGAAGTCGTTTTATTAAAGATTCTGCTAGACCATTTTG
196 CTCATAAGTAATGGCATTGCTATCAATTGAAGTCGTTTTATTAAAGATTCTGCTAGACCATTTTG
*
79186393 TGTATGAACATGAGCTACAGGATGTTCAACACTTATTCCAATCAACATGCAATAGTTATTAAAAG
261 TGTATGAACATGAGCTACAAGATGTTCAACACTTATTCCAATCAACATGCAATAGTTATTAAAAG
79186458 ACTGAGAAGTAAATTCACCAGCATTATCAAGACGGATGGTCTTAATAGGAAAATCTGGGAAATAG
326 ACTGAGAAGTAAATTCACCAGCATTATCAAGACGGATGGTCTTAATAGGAAAATCTGGGAAATAG
* *
79186523 GCTCGTAATCGAATCAATTGAGCAAGCAATCTTGCAAACACTAGGTTGCGAGTTGATAACAAAGA
391 GCTCGTAATCGAATCAATTGAGCAAGCAATCTCGCAAACACCAGGTTGCGAGTTGATAACAAAGA
79186588 TACATGAGACCATCTACTCGATGCATCGATTAAAACCATAAAGTACCTAAATGGT
456 TACATGAGACCATCTACTCGATGCATCGATTAAAACCATAAAGTACCTAAATGGT
79186643 CC
1 CC
79186645 ACATGGGGGA
Statistics
Matches: 497, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
510 497 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (510 bp):
CCCATCTTAGTTCTATGTGGTGGAGAAATTGGAACATATACGGCACATCCAAATGTTCTTAGATG
GGAAATATTTGGTTCCTAACCATGAACTATTTGTAAGGAGGAGACTTTATGATAACTTGTTGGCC
TGATGCGAATTAATGCAGCTGCATGTAAAATTGCATGCCCCCAAGCAGTGATTGGGAGTTTTAAC
CTCATAAGTAATGGCATTGCTATCAATTGAAGTCGTTTTATTAAAGATTCTGCTAGACCATTTTG
TGTATGAACATGAGCTACAAGATGTTCAACACTTATTCCAATCAACATGCAATAGTTATTAAAAG
ACTGAGAAGTAAATTCACCAGCATTATCAAGACGGATGGTCTTAATAGGAAAATCTGGGAAATAG
GCTCGTAATCGAATCAATTGAGCAAGCAATCTCGCAAACACCAGGTTGCGAGTTGATAACAAAGA
TACATGAGACCATCTACTCGATGCATCGATTAAAACCATAAAGTACCTAAATGGT
Found at i:79188192 original size:44 final size:44
Alignment explanation
Indices: 79188129--79188218 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
79188119 GAAAGTTGAG
*
79188129 TATGTTTTTTCTAACATTTCTGCATCAGTAATCTTCTCTCTACA
1 TATGTTTTTTCTAACATTTCTGCATCAGTAATCTTCTCTCCACA
79188173 TATGTTTTTTCTAACATTTCTGCATCAGTAATCTTCTCTCCACA
1 TATGTTTTTTCTAACATTTCTGCATCAGTAATCTTCTCTCCACA
79188217 TA
1 TA
79188219 AATTCAATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (44 bp):
TATGTTTTTTCTAACATTTCTGCATCAGTAATCTTCTCTCCACA
Found at i:79189014 original size:28 final size:28
Alignment explanation
Indices: 79188980--79189039 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
79188970 CATATTAATA
79188980 GGGTATAGGAAA-AGTCTCATAACTTATG
1 GGGTATA-GAAAGAGTCTCATAACTTATG
* *
79189008 GGGTATAGAAAGAGTTTTATAACTTATG
1 GGGTATAGAAAGAGTCTCATAACTTATG
79189036 GGGT
1 GGGT
79189040 TGATAATGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (28 bp):
GGGTATAGAAAGAGTCTCATAACTTATG
Found at i:79193053 original size:53 final size:53
Alignment explanation
Indices: 79192970--79193072 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
79192960 TACATATCGC
* * *
79192970 ACCGATGTCATATCCTAGATATGGTATTATACGGAAGCACATAATCACATCAT
1 ACCGATGCCATAGCCCAGATATGGTATTATACGGAAGCACATAATCACATCAT
* * *
79193023 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGTACATAATCACAT
1 ACCGATGCCATAGCCCAGATATGGTATTATACGGAAGCACATAATCACAT
79193073 ATTTCCATGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGATATGGTATTATACGGAAGCACATAATCACATCAT
Done.