Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 246 of 253
Found at i:79193434 original size:19 final size:19
Alignment explanation
Indices: 79193410--79193507 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
79193400 AATCTTTAAG
*
79193410 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
79193429 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
79193448 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
79193465 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
79193484 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
79193505 GAT
1 GAT
79193508 CCTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:79193440 original size:36 final size:36
Alignment explanation
Indices: 79193400--79193487 Score: 121
Period size: 36 Copynumber: 2.5 Consensus size: 36
79193390 ATGGAAATAT
79193400 AATCTTTAAGGATATG-T-AATCTTAGATATGATATGC
1 AATCTTT-A-GATATGATAAATCTTAGATATGATATGC
79193436 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATGATA-AATCTTAGATATGATATGC
79193472 AATC-TTAGATATGATA
1 AATCTTTAGATATGATA
79193488 TGCAATCTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
33 6 0.12
34 2 0.04
35 2 0.04
36 39 0.80
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.38
Consensus pattern (36 bp):
AATCTTTAGATATGATAAATCTTAGATATGATATGC
Found at i:79193446 original size:14 final size:15
Alignment explanation
Indices: 79193429--79193485 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
79193419 TCTTAGATAT
79193429 GATATG-CAATCTTA
1 GATATGACAATCTTA
79193443 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
79193460 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
79193479 GATATGA
1 GATATGA
79193486 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:79199292 original size:51 final size:52
Alignment explanation
Indices: 79199202--79199315 Score: 124
Period size: 51 Copynumber: 2.2 Consensus size: 52
79199192 TGTTACGAGC
* * * *
79199202 TAAATTTGTTAAATCAAGACGAAATTGATAAAATATGT-AAATGTTTGTGGGT
1 TAAATTTGTTAAATCAAGACCAAATTGACAAAATATGTAAAATGTTTAT-GAT
* * * * *
79199254 TAAATTTGTTAAA-CAATACCAATTTGACAGAATGTGTAAAATTTTTATGAT
1 TAAATTTGTTAAATCAAGACCAAATTGACAAAATATGTAAAATGTTTATGAT
79199305 TAAATTTGTTA
1 TAAATTTGTTA
79199316 TTATACCAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
51 31 0.60
52 21 0.40
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.39
Consensus pattern (52 bp):
TAAATTTGTTAAATCAAGACCAAATTGACAAAATATGTAAAATGTTTATGAT
Found at i:79199784 original size:19 final size:19
Alignment explanation
Indices: 79199757--79199793 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79199747 TGTAATATTA
*
79199757 AATTTAATTAAATGCAATT
1 AATTAAATTAAATGCAATT
*
79199776 AATTAAATTAATTGCAAT
1 AATTAAATTAAATGCAAT
79199794 GATTTTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
AATTAAATTAAATGCAATT
Found at i:79203394 original size:85 final size:87
Alignment explanation
Indices: 79203237--79203398 Score: 206
Period size: 85 Copynumber: 1.9 Consensus size: 87
79203227 TCAAATTTTT
* * * *
79203237 TTTTAAAAAAAAAGTAATTAAGCTGTTCTTTTTTTTTATTCAATTGAGTACTTGAATTTTTAAAA
1 TTTTAAAAAAAAAGTAATTAAGCTGTTCTTTTTTTTCACTCAATTGAGTACTTAAACTTTTAAAA
*
79203302 TGTATTAAAAAAACCTTTAAAC
66 TGCATTAAAAAAACCTTTAAAC
* * *
79203324 TTTTCAAAAAAAA-TAATTAAGTCTG-TC-TTTTTTTCACTCATTTG-GATATTTAAACTTTTAA
1 TTTTAAAAAAAAAGTAATTAAG-CTGTTCTTTTTTTTCACTCAATTGAG-TACTTAAACTTTTAA
79203385 AATGCATTAAAAAA
64 AATGCATTAAAAAA
79203399 CTCTTAAAGT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 1 0.02
85 39 0.60
86 10 0.15
87 15 0.23
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.43
Consensus pattern (87 bp):
TTTTAAAAAAAAAGTAATTAAGCTGTTCTTTTTTTTCACTCAATTGAGTACTTAAACTTTTAAAA
TGCATTAAAAAAACCTTTAAAC
Found at i:79203463 original size:11 final size:11
Alignment explanation
Indices: 79203447--79203558 Score: 60
Period size: 11 Copynumber: 10.5 Consensus size: 11
79203437 CTTATTAAAG
79203447 ATTATAAAAAA
1 ATTATAAAAAA
79203458 ATTATAAAAATA
1 ATTATAAAAA-A
79203470 A-TA-AATAATAA
1 ATTATAA-AA-AA
* *
79203481 ATTTTATAAAA
1 ATTATAAAAAA
*
79203492 ATTAT---TAA
1 ATTATAAAAAA
*
79203500 ATTTTAATAAAA
1 ATTATAA-AAAA
79203512 A-TATAAAAAA
1 ATTATAAAAAA
79203522 ATTA-AAAAAA
1 ATTATAAAAAA
**
79203532 ATT-TGTTAAAA
1 ATTAT-AAAAAA
*
79203543 ATTTTAAAAAA
1 ATTATAAAAAA
79203554 ATTAT
1 ATTAT
79203559 TGTAAACTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 26
0.67 0.11 0.23
Matches are distributed among these distances:
8 6 0.08
10 16 0.21
11 43 0.57
12 10 0.13
13 1 0.01
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (11 bp):
ATTATAAAAAA
Found at i:79203870 original size:27 final size:27
Alignment explanation
Indices: 79203813--79203881 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
79203803 CTTTATAAAA
* * *
79203813 TTTATAATTTTTTTATATTTCTATGTAT
1 TTTATAA-TTTTTAAGATTTCTATATAT
* *
79203841 TTTATAATTTTTAAGATTTTTATATTT
1 TTTATAATTTTTAAGATTTCTATATAT
* *
79203868 TTTCTATTTTTTAA
1 TTTATAATTTTTAA
79203882 TATTAAATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 27 0.79
28 7 0.21
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (27 bp):
TTTATAATTTTTAAGATTTCTATATAT
Found at i:79204075 original size:89 final size:84
Alignment explanation
Indices: 79203982--79204171 Score: 188
Period size: 89 Copynumber: 2.2 Consensus size: 84
79203972 TTTTTTTTTT
* *
79203982 AAGTTTGAAGGTCTTTTTAATACATTTTGAAAGTTTAAGTACCCAATTAAGTGCAAAAAAAAATA
1 AAGTTTGAAGGTCTTTTTAATACATTTTAAAAGTTTAAGTACCCAAATAAGT---AAAAAAAA-A
* *
79204047 AGAGCTTAATTGCTTTTTCTAAAA
62 A-AGCTAAATTACTTTTTCTAAAA
** * ** *
79204071 AAGTTCAAAAG-CTTTTTTAATGTATTTTAAAAGTTTAAGTACCTAAATAAGTAAAAAAAAAAAG
1 AAGTTTGAAGGTC-TTTTTAATACATTTTAAAAGTTTAAGTACCCAAATAAGTAAAAAAAAAAAG
* *
79204135 CTAAATTATTTTTTTTAAAA
65 CTAAATTACTTTTTCTAAAA
*
79204155 AA-TTTGAGGGT-TTTTTA
1 AAGTTTGAAGGTCTTTTTA
79204172 CATCTTTAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
82 6 0.07
83 4 0.05
84 20 0.24
85 2 0.02
86 8 0.10
88 1 0.01
89 42 0.51
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.38
Consensus pattern (84 bp):
AAGTTTGAAGGTCTTTTTAATACATTTTAAAAGTTTAAGTACCCAAATAAGTAAAAAAAAAAAGC
TAAATTACTTTTTCTAAAA
Found at i:79214353 original size:13 final size:13
Alignment explanation
Indices: 79214337--79214362 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79214327 TAATTTAATA
79214337 ATATATTAAAAAT
1 ATATATTAAAAAT
79214350 ATATATTAAAAAT
1 ATATATTAAAAAT
79214363 GAAAAGCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATATATTAAAAAT
Found at i:79220688 original size:20 final size:20
Alignment explanation
Indices: 79220665--79220707 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
79220655 GAAAATTGGG
*
79220665 TAATTTATGGACAAAAATGA
1 TAATTTATGGACAAAAAAGA
*
79220685 TAATTTATGGATAAAAAAGA
1 TAATTTATGGACAAAAAAGA
79220705 TAA
1 TAA
79220708 GACCTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.30
Consensus pattern (20 bp):
TAATTTATGGACAAAAAAGA
Found at i:79223323 original size:4 final size:4
Alignment explanation
Indices: 79223314--79223359 Score: 67
Period size: 4 Copynumber: 11.5 Consensus size: 4
79223304 CTACCACATC
*
79223314 TACA TACA TACT TACA -AGCA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TA-CA TACA TACA TACA TACA TACA TACA TA
79223360 TAAAGATTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
3 1 0.03
4 36 0.95
5 1 0.03
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:79223797 original size:29 final size:29
Alignment explanation
Indices: 79223764--79223822 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79223754 TATAACATGC
79223764 AATAAAATCATATTGATAAACCAATTGAA
1 AATAAAATCATATTGATAAACCAATTGAA
79223793 AATAAAATCATATTGATAAACCAATTGAA
1 AATAAAATCATATTGATAAACCAATTGAA
79223822 A
1 A
79223823 CTAGAATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (29 bp):
AATAAAATCATATTGATAAACCAATTGAA
Found at i:79232402 original size:38 final size:38
Alignment explanation
Indices: 79232351--79232428 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
79232341 ACCCTATATG
*
79232351 TAAATAAGCACAATGAAACACACAAAAGAGGAAGCGTA
1 TAAATAAGCACAATGAAACACACAAAAGAGGAAGCATA
79232389 TAAATAAGCACAATGAAACACACAAAAGAGGAAGCATA
1 TAAATAAGCACAATGAAACACACAAAAGAGGAAGCATA
79232427 TA
1 TA
79232429 GAAACCAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (38 bp):
TAAATAAGCACAATGAAACACACAAAAGAGGAAGCATA
Found at i:79252905 original size:26 final size:26
Alignment explanation
Indices: 79252874--79252924 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
79252864 TCCAATTATT
*
79252874 TTTTTA-ATAAATAAATATCACTTTTC
1 TTTTTATA-AAATAAATACCACTTTTC
79252900 TTTTTATAAAATAAATACCACTTTT
1 TTTTTATAAAATAAATACCACTTTT
79252925 TAATGGGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (26 bp):
TTTTTATAAAATAAATACCACTTTTC
Found at i:79253212 original size:74 final size:74
Alignment explanation
Indices: 79253073--79253213 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 74
79253063 CGTAGTTACC
* * * *
79253073 TTTCTTAATAATATCACTTTTAAAGATCAAATCTGCGTTATCTTTTTAGGAGTGCAATGTATTTT
1 TTTCTTAATAATATCACTTTCAAAGATCAAACCCGCGTTATCTTTTTAGGAGTGCAATGCATTTT
79253138 ACTAATGCA
66 ACTAATGCA
* * * * *
79253147 TTTCTTAGTAATATCACTTTCAATGGTCAAACCCGCGTTATCTTTTTAGGGGTGCAATGCGTTTT
1 TTTCTTAATAATATCACTTTCAAAGATCAAACCCGCGTTATCTTTTTAGGAGTGCAATGCATTTT
79253212 AC
66 AC
79253214 CAGTGCACGG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (74 bp):
TTTCTTAATAATATCACTTTCAAAGATCAAACCCGCGTTATCTTTTTAGGAGTGCAATGCATTTT
ACTAATGCA
Found at i:79255574 original size:12 final size:12
Alignment explanation
Indices: 79255559--79255583 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79255549 AGGTCACAGT
79255559 TGATTCGCTACC
1 TGATTCGCTACC
79255571 TGATTCGCTACC
1 TGATTCGCTACC
79255583 T
1 T
79255584 CTTTCTGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (12 bp):
TGATTCGCTACC
Found at i:79259655 original size:16 final size:16
Alignment explanation
Indices: 79259626--79259658 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79259616 TCGAATTTCT
79259626 TTTTACATAACATATA
1 TTTTACATAACATATA
79259642 TTTTA-ATAATCATATA
1 TTTTACATAA-CATATA
79259658 T
1 T
79259659 ATTCTATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTACATAACATATA
Found at i:79263197 original size:4 final size:4
Alignment explanation
Indices: 79263188--79263242 Score: 101
Period size: 4 Copynumber: 13.8 Consensus size: 4
79263178 AAGTTAGGAA
79263188 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
79263236 ATAT ATG
1 ATGT ATG
79263243 CCCTACAGTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:79268781 original size:12 final size:13
Alignment explanation
Indices: 79268764--79268796 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
79268754 TTGCGAGCGC
*
79268764 TCTTTTTGTTG-T
1 TCTTTTGGTTGCT
79268776 TCTTTTGGTTGCT
1 TCTTTTGGTTGCT
79268789 TCTTTTGG
1 TCTTTTGG
79268797 CATAAATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.00, C:0.12, G:0.21, T:0.67
Consensus pattern (13 bp):
TCTTTTGGTTGCT
Found at i:79271591 original size:129 final size:125
Alignment explanation
Indices: 79271315--79271754 Score: 486
Period size: 125 Copynumber: 3.4 Consensus size: 125
79271305 CCCAAACGGT
* * * * * * * *
79271315 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAATTTCTAAATACGAAACATTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
* * ** * ** *
79271380 TTAATTTGAGAAAACATGGATGTAATTTCAAATGGATATTCTGTATTTTAGTCGAATGGA
66 TTAGTTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAA
*
79271440 AAATCGAAACCCAGCACTATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
* *
79271505 TTTGTTTAAGAAAACATGAATAAAATTTCAAAAAAAAGGATATTCCATATTTTAGTCGAATGAA
66 TTAGTTTAAGAAAACATGGATAAAATTTC----AAAAGGATATTCCATATTTTAGTCGAATGAA
* *
79271569 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAGACTCCCCAAACACGAAATATTGCCTCGT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACT-TCCAAACACGAAATATTGCCTCGT
* * * * **
79271634 TTTAGTTTTAA-AAAGCATGGACAAAATTTCCAAAGGATATTTCATATTTTAGTTGAACGGAAAA
65 TTTAG-TTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCCATATTTTAG-T---C-GAATG
79271698 AA
124 AA
* * ** *
79271700 AAATCGAAACCCAGCACGATTGGGCACAATTTCTCGGACCTCCAAACACGAAATA
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATA
79271755 ATCCTTTAAG
Statistics
Matches: 269, Mismatches: 35, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
125 79 0.29
126 20 0.07
127 1 0.00
129 65 0.24
130 58 0.22
131 46 0.17
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
TTAGTTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCCATATTTTAGTCGAATGAA
Found at i:79271903 original size:21 final size:23
Alignment explanation
Indices: 79271856--79271909 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
79271846 CATTCAAGAT
**
79271856 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
79271879 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
79271900 AAAAT-ATATA
1 AAAATAATATA
79271910 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:79272144 original size:15 final size:15
Alignment explanation
Indices: 79272120--79272174 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
79272110 ATATAAATAG
79272120 AAATAAAAATATAAT
1 AAATAAAAATATAAT
*
79272135 AAATACAAATATAAT
1 AAATAAAAATATAAT
*
79272150 AATAGTAGAAATATAAAT
1 AA-A-TAAAAATAT-AAT
79272168 AAATAAA
1 AAATAAA
79272175 TAAAAATTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 16 0.47
16 4 0.12
17 9 0.26
18 5 0.15
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (15 bp):
AAATAAAAATATAAT
Found at i:79272168 original size:44 final size:44
Alignment explanation
Indices: 79272114--79272200 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
79272104 ATTAGTATAT
79272114 AAATAGAAATAAA-AATATAATAAA-TACA-AATATAATAATAGTAG
1 AAATAGAAATAAATAA-ATAA-AAATTACATAA-ATAATAATAGTAG
* *
79272158 AAATATAAATAAATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAAATAAATAAAAATTACATAAATAATAATAGTA
79272201 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 3 0.08
44 31 0.82
45 4 0.11
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAAATAAATAAAAATTACATAAATAATAATAGTAG
Found at i:79273338 original size:43 final size:44
Alignment explanation
Indices: 79273245--79273346 Score: 134
Period size: 43 Copynumber: 2.3 Consensus size: 44
79273235 CTCCACTATT
* * *
79273245 GCTTAGGGAGGTAAGATCTGTAATTTTCAGCTTGTTTCCCTACC
1 GCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCCCCACC
* *
79273289 GCTTAGGGAGATAAGATTTGTAA-TTTCAGCCTGTTTCCCCACT
1 GCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCCCCACC
* *
79273332 GTTTAGGGGGATAAG
1 GCTTAGGGAGATAAG
79273347 GCTCACCGTC
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 30 0.59
44 21 0.41
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (44 bp):
GCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTTCCCCACC
Found at i:79273454 original size:87 final size:87
Alignment explanation
Indices: 79273284--79273455 Score: 202
Period size: 87 Copynumber: 2.0 Consensus size: 87
79273274 GCTTGTTTCC
* * *
79273284 CTACCGCTTAGGGAGATAAGATTTGTAATTTCAGCCTGTTTCCCCACTGTTTAGGGGGATAAGGC
1 CTACCGCTTAGGGAGATAAGATCTGTAATTTCAGCCTATTACCCCACTGTTTAGGGGGATAAGGC
* * *
79273349 TCACCGTCTTCGATCTGCTCCA
66 TCACCATCTTCAACCTGCTCCA
* * * * *
79273371 CTACTGCTTAGGGAGATGAGATCTGTAATTTTCAGCCTATTACCCTATTGTTTAGGGGGTTAAGG
1 CTACCGCTTAGGGAGATAAGATCTGTAA-TTTCAGCCTATTACCCCACTGTTTAGGGGGATAAGG
***
79273436 CT-TGTATCTTCAACCTGCTC
65 CTCACCATCTTCAACCTGCTC
79273456 TCTTGCTACC
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
87 37 0.53
88 33 0.47
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (87 bp):
CTACCGCTTAGGGAGATAAGATCTGTAATTTCAGCCTATTACCCCACTGTTTAGGGGGATAAGGC
TCACCATCTTCAACCTGCTCCA
Found at i:79273653 original size:133 final size:133
Alignment explanation
Indices: 79273492--79274055 Score: 824
Period size: 133 Copynumber: 4.2 Consensus size: 133
79273482 GGTGGCTTAA
* *
79273492 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTGCAGTCTGCTCCCTGTAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTCTAATTTGCAGTCTGCTCCCTGCAACTTCA
* * *
79273557 GAAAGATAAGACTAGTGGCTAAAATCTGCTCTATAGCCGATACATGGAGATAAGACTCACCACTT
66 GAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTT
79273622 CTG
131 CTG
* * * *
79273625 ATCTGCTCCATAGCTGATACATGGAGATAAGATCTCTAATTTGTAGTCTGCTACCTACAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTCTAATTTGCAGTCTGCTCCCTGCAACTTCA
* * * * *
79273690 GGAAGATAAGACTAGTGACTAAAATTTACTCCATAGTCGATACATGGAGATAAGACTCGCCATTT
66 GAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTT
79273755 CTG
131 CTG
* * * * * *
79273758 ATCTACTCAATAGCCGGTACATGGAGATAAGATCTCTAATTTGTAGTCTACTCCCTGCAACTCCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTCTAATTTGCAGTCTGCTCCCTGCAACTTCA
* * *
79273823 GGAAGATAAGAGTAGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTT
66 GAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTT
79273888 CTG
131 CTG
* * * *
79273891 ATTTGTTCCATAGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCTTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTCTAATTTGCAGTCTGCTCCCTGCAACTTCA
* *
79273956 -AGAAGATAAGACTAGAGGCTAAAATCTGCTCCATAACCGATACATGGAGATAAGACTCGCCATT
66 GA-AAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATT
79274020 TCTG
130 TCTG
* * *
79274024 ATCTACTCCATAACCGATACATGAAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
79274056 CTCGCCATCT
Statistics
Matches: 382, Mismatches: 48, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
133 382 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTCTAATTTGCAGTCTGCTCCCTGCAACTTCA
GAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTT
CTG
Found at i:79274005 original size:88 final size:88
Alignment explanation
Indices: 79273897--79274198 Score: 317
Period size: 88 Copynumber: 3.4 Consensus size: 88
79273887 TCTGATTTGT
** * *
79273897 TCCATAGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCTTGCAACTTCAAGAAGA
1 TCCATAGCCGATACATGGAGATAAGATCTGCAATTTGCAGTCTACTCCATGCAACTTCAAGAAGA
79273962 TAAGACTAGAGGCTAAAATCTGC
66 TAAGACTAGAGGCTAAAATCTGC
* * * * *
79273985 TCCATAACCGATACATGGAGATAAGA-CTCGCCATTT-CTGATCTACTCCAT--AACCGATACAT
1 TCCATAGCCGATACATGGAGATAAGATCT-GCAATTTGCAG-TCTACTCCATGCAA-C--TTCAA
* * ***
79274046 GAAGATAAGACTCGCCA-TCTTTGATCTGC
61 GAAGATAAGACTAG--AGGCTAAAATCTGC
* * * *
79274075 TCCATAGCCGATACATGGAGATAAGATCTGGAATTTGCAGTCTTCTCCCTGCAACTTCAGGAAGA
1 TCCATAGCCGATACATGGAGATAAGATCTGCAATTTGCAGTCTACTCCATGCAACTTCAAGAAGA
*
79274140 TAAGACTAGAGGCTAAAATCTGT
66 TAAGACTAGAGGCTAAAATCTGC
* *
79274163 TCCATAGCCGATACATGGAGATAAGACCTGCCATTT
1 TCCATAGCCGATACATGGAGATAAGATCTGCAATTT
79274199 TCTAATCTGC
Statistics
Matches: 171, Mismatches: 31, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
86 2 0.01
87 6 0.04
88 77 0.45
89 32 0.19
90 46 0.27
91 6 0.04
92 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (88 bp):
TCCATAGCCGATACATGGAGATAAGATCTGCAATTTGCAGTCTACTCCATGCAACTTCAAGAAGA
TAAGACTAGAGGCTAAAATCTGC
Found at i:79274035 original size:178 final size:179
Alignment explanation
Indices: 79273845--79274234 Score: 615
Period size: 178 Copynumber: 2.2 Consensus size: 179
79273835 TAGTGGCTAA
* *
79273845 AATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCAT-TTCTGATTTGTTCCATAGCCGAT
1 AATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATCTT-TGATCTGCTCCATAGCCGAT
* *
79273909 ACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCTTGCAACTTCAAGAAGATAAGACTAGAGG
65 ACATGGAGATAAGATCTAGAATTTGCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTAGAGG
79273974 CTAAAATCTGCTCCATAACCGATACATGGAGATAAGA-CTCGCCA-TTTCT
130 CTAAAATCTGCTCCATAACCGATACATGGAGATAAGACCT-GCCATTTTCT
* * *
79274023 GATCTACTCCATAACCGATACATGAAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATA
1 AATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATA
* * *
79274088 CATGGAGATAAGATCTGGAATTTGCAGTCTTCTCCCTGCAACTTCAGGAAGATAAGACTAGAGGC
66 CATGGAGATAAGATCTAGAATTTGCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTAGAGGC
* *
79274153 TAAAATCTGTTCCATAGCCGATACATGGAGATAAGACCTGCCATTTTCT
131 TAAAATCTGCTCCATAACCGATACATGGAGATAAGACCTGCCATTTTCT
* *
79274202 AATCTGCTCCATAGTCGATACATGGAGATAAGA
1 AATCTGCTCCATAGCCGATACATGAAGATAAGA
79274235 TCTCTAATTT
Statistics
Matches: 192, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
178 155 0.81
179 37 0.19
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (179 bp):
AATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATA
CATGGAGATAAGATCTAGAATTTGCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTAGAGGC
TAAAATCTGCTCCATAACCGATACATGGAGATAAGACCTGCCATTTTCT
Found at i:79274166 original size:266 final size:265
Alignment explanation
Indices: 79273505--79274188 Score: 640
Period size: 266 Copynumber: 2.6 Consensus size: 265
79273495 TGCTCCATAG
* * * * * * * * *
79273505 CCGATACATGGAGATAAGATCTG-TAATTTGCAGTCTGCTCCCTGTAACTTCAGAAAGATAAGAC
1 CCGATACATGAAGATAAGATC-GCCAATTTGTAGTCTACTCCATGCAACTACAGGAAGATAAGAG
* * * * * * *
79273569 TAGTGGCTAAAATCTGCTCTATAGCCGATACATGG-AGATAAGACTCACCACT-TCTGATCTGCT
65 TACTGGCTAAAATCTGCTCCATAGCCAATACA-GGAAGATAAGACT-AGCA-TGGCTAATCTGTT
* * * *
79273632 CCATAGCTGATACATGGAGATAAGATCTCTAATTTGTAGTCTGCTACCTACAACTTCAGGAAGAT
127 CCATAGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTACCTACAACTTCAAGAAGAT
* * **
79273697 AAGACTAGTGACTAAAATTTACTCCATAGTCGATACATGGAGATAAGACTCGCCATTTCTGATCT
192 AAGACTAGAGACTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCT
*
79273762 ACTCAATAG
257 ACTCAATAA
* * * * * *
79273771 CCGGTACATGGAGATAAGATCTCTAATTTGTAGTCTACTCCCTGCAACTCCAGGAAGATAAGAGT
1 CCGATACATGAAGATAAGATCGCCAATTTGTAGTCTACTCCATGCAACTACAGGAAGATAAGAGT
* * * * ** * *
79273836 AGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTCTGATTTGTTCCA
66 ACTGGCTAAAATCTGCTCCATAGCCAATACAGGAAGATAAGACTAG-CATGGCTAATCTGTTCCA
*
79273901 TAGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCT-CCTTGCAACTTCAAGAAGATAA
130 TAGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTACC-TACAACTTCAAGAAGATAA
* *
79273965 GACTAGAGGCTAAAATCTGCTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTAC
194 GACTAGAGACTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTAC
*
79274030 TCCATAA
259 TCAATAA
* * *
79274037 CCGATACATGAAGATAAGACTCGCCATCTTTG-A-TCTGCTCCATAGCCGA-TACATGG-AGATA
1 CCGATACATGAAGATAAGA-TCGCCA-ATTTGTAGTCTACTCCAT-G-CAACTACA-GGAAGATA
* ** * * * *
79274098 AGA-T-CTGGAATTTGCAGTCTTCTCCCT-G-CAACTTCAGGAAGATAAGACTAG-A-GGCTAAA
61 AGAGTACTGG---CTAAAATCTGCTCCATAGCCAA-TACAGGAAGATAAGACTAGCATGGCT--A
79274157 ATCTGTTCCATAGCCGATACATGGAGATAAGA
120 ATCTGTTCCATAGCCGATACATGGAGATAAGA
79274189 CCTGCCATTT
Statistics
Matches: 351, Mismatches: 51, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
264 2 0.01
265 8 0.02
266 289 0.82
267 34 0.10
268 18 0.05
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (265 bp):
CCGATACATGAAGATAAGATCGCCAATTTGTAGTCTACTCCATGCAACTACAGGAAGATAAGAGT
ACTGGCTAAAATCTGCTCCATAGCCAATACAGGAAGATAAGACTAGCATGGCTAATCTGTTCCAT
AGCCGATACATGGAGATAAGATCTATAATTTGCAGTCTGCTACCTACAACTTCAAGAAGATAAGA
CTAGAGACTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTACTC
AATAA
Found at i:79274214 original size:134 final size:134
Alignment explanation
Indices: 79274024--79274381 Score: 517
Period size: 134 Copynumber: 2.7 Consensus size: 134
79274014 GCCATTTCTG
* * * *
79274024 ATCTACTCCATAACCGATACATGAAGATAAGA-CTCGCCATCTT-TGATCTGCTCCATAGCCGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCT-GCCATTTTCTGATCTGCTCCATAGCCGAT
** *
79274087 ACATGGAGATAAGATCTGGAATTTGCAGTCTTCTCCCTGCAACTTCAGGAAGATAAGACTAGAGG
65 ACATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAGATAAGACTAGAGG
79274152 CTAAA
130 CTAAA
* * *
79274157 ATCTGTTCCATAGCCGATACATGGAGATAAGACCTGCCATTTTCTAATCTGCTCCATAGTCGATA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCCATTTTCTGATCTGCTCCATAGCCGATA
* ** *
79274222 CATGGAGATAAGATCTCTAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAGATAAGACTAGTTGT
66 CATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAGATAAGACTAGAGGC
79274287 TAAA
131 TAAA
* * *
79274291 ATCTGCTCCATAGCTGATACATAGAGATAAGACCCT-CCATTTTC-GATCTACTCCATAGCCGAT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CCTGCCATTTTCTGATCTGCTCCATAGCCGAT
79274354 ACATGGAGATAAGATCTATAATTTGCAG
65 ACATGGAGATAAGATCTATAATTTGCAG
79274382 CCTGTTACCT
Statistics
Matches: 202, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
133 78 0.39
134 121 0.60
135 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (134 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACCTGCCATTTTCTGATCTGCTCCATAGCCGATA
CATGGAGATAAGATCTATAATTTGCAGTCTGCTCCCTGCAACTTCAGGAAGATAAGACTAGAGGC
TAAA
Found at i:79274583 original size:64 final size:64
Alignment explanation
Indices: 79274481--79274607 Score: 227
Period size: 64 Copynumber: 2.0 Consensus size: 64
79274471 TCATGTATAT
* * *
79274481 ATGCTTATGCCAAATAGTTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAGCTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
79274545 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGT
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGT
79274608 ACTATAAATG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:79278685 original size:19 final size:19
Alignment explanation
Indices: 79278661--79278706 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
79278651 TGTGATGTTT
*
79278661 AATGCACATG-ATGCAATG
1 AATGCAAATGTATGCAATG
*
79278679 CAATGCAAATGTATGGAATG
1 -AATGCAAATGTATGCAATG
79278699 AATGCAAA
1 AATGCAAA
79278707 AGAAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (19 bp):
AATGCAAATGTATGCAATG
Found at i:79280366 original size:125 final size:125
Alignment explanation
Indices: 79280235--79280675 Score: 445
Period size: 125 Copynumber: 3.4 Consensus size: 125
79280225 CCCAAACGGT
* * * * **
79280235 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATATGAAACGTTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCGAATTTCCAAACACGAAATATTGCCTCATT
* * * * *
79280300 TTAATTTGAGAAAACACGGATGAAATTTCAAAAGGATATTCTGTATTTTAATTGAATGGA
66 TTAGTTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCTGTATTTTAGTTGAATGGA
* * * *
79280360 AAATCGAAACCCAACACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCGAATTTCCAAACACGAAATATTGCCTCATT
* * * * *
79280425 TTAGTTTAAGAAAACATGAATAAAATTTCAAAAAAAAAAGATATTCCGTATTTTAGTCGAATGAA
66 TTAGTTTAAGAAAACATGGATAAAATTTC-----AAAAGGATATTCTGTATTTTAGTTGAATGGA
* * ** *
79280490 AAATTGAAACCCAGCACGATTGGGCACGATCTCTCAGACTCCCCAAACACGAAATATTTCCTCAT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTC-GAATTTCCAAACACGAAATATTGCCTCAT
* * * *
79280555 TTTAGTTTTAA-AAAGCATGGACAAAATTTCCAAAGGATATT-TCGTATTTTAGTTGAACGGAAA
65 TTTAG-TTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCT-GTATTTTAGTTGAATGG---
79280618 AAA
125 --A
* * * **
79280621 AAATTGAAACCCAGCACGATTGGGCACGATTTCTCGGACCTCCAAACACGAAATA
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCGAATTTCCAAACACGAAATA
79280676 ATCCCTTAAG
Statistics
Matches: 260, Mismatches: 43, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
125 79 0.30
126 23 0.09
130 75 0.29
131 78 0.30
132 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCGAATTTCCAAACACGAAATATTGCCTCATT
TTAGTTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCTGTATTTTAGTTGAATGGA
Found at i:79280514 original size:130 final size:125
Alignment explanation
Indices: 79280235--79280675 Score: 452
Period size: 131 Copynumber: 3.4 Consensus size: 125
79280225 CCCAAACGGT
* * * * * * **
79280235 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATATGAAACGTTGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* * * * * * * *
79280300 TTAATTTGAGAAAACACGGATGAAATTTCAAAAGGATATTCTGTATTTTAATTGAATGGA
66 TTAGTTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAA
* *
79280360 AAATCGAAACCCAACACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
* *
79280425 TTAGTTTAAGAAAACATGAATAAAATTTCAAAAAAAAAAGATATTCCGTATTTTAGTCGAATGAA
66 TTAGTTTAAGAAAACATGGATAAAATTTC-----AAAAGGATATTCCGTATTTTAGTCGAATGAA
* * * *
79280490 AAATTGAAACCCAGCACGATTGGGCACGATCTCTCAGACTCCCCAAACACGAAATATTTCCTCAT
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACT-TCCAAACACGAAATATTGCCTCAT
* * * * **
79280555 TTTAGTTTTAA-AAAGCATGGACAAAATTTCCAAAGGATATTTCGTATTTTAGTTGAACGGAAAA
65 TTTAG-TTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCCGTATTTTAG-T---C-GAATG
79280619 AA
124 AA
* * ** *
79280621 AAATTGAAACCCAGCACGATTGGGCACGATTTCTCGGACCTCCAAACACGAAATA
1 AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATA
79280676 ATCCCTTAAG
Statistics
Matches: 266, Mismatches: 38, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
125 79 0.30
126 19 0.07
127 1 0.00
130 78 0.29
131 84 0.32
132 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAATATTGCCTCATT
TTAGTTTAAGAAAACATGGATAAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAA
Found at i:79281058 original size:15 final size:15
Alignment explanation
Indices: 79281038--79281090 Score: 79
Period size: 15 Copynumber: 3.3 Consensus size: 15
79281028 ATATAAATAG
79281038 AAATAGAAATATAAT
1 AAATAGAAATATAAT
79281053 AAATAGAAATATAAT
1 AAATAGAAATATAAT
79281068 AATAGTAGAAATATAAAT
1 AA-A-TAGAAATAT-AAT
79281086 AAATA
1 AAATA
79281091 AATCAAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
15 17 0.49
16 3 0.09
17 10 0.29
18 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:79281086 original size:44 final size:43
Alignment explanation
Indices: 79281032--79281118 Score: 99
Period size: 44 Copynumber: 2.0 Consensus size: 43
79281022 ATTAGTATAT
79281032 AAATAGAAATAGAAATATAAT-AAA-TAGA-AATATAATAATAGTAG
1 AAATAGAAAT--AAATA-AATAAAATTAGATAA-ATAATAATAGTAG
*
79281076 AAATATAAATAAATAAATCAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAAATAAAT-AAAATTAGATAAATAATAATAGTA
79281119 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
41 3 0.08
42 5 0.13
43 3 0.08
44 25 0.66
45 2 0.05
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.26
Consensus pattern (43 bp):
AAATAGAAATAAATAAATAAAATTAGATAAATAATAATAGTAG
Found at i:79283426 original size:2 final size:2
Alignment explanation
Indices: 79283419--79283445 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79283409 CTAATCCAAA
79283419 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
79283446 AAACTCAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79283739 original size:31 final size:32
Alignment explanation
Indices: 79283704--79283776 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
79283694 TGAATCAGTC
79283704 AATTTTAGTCCTTATAC-TTTTCAAATTTTGA
1 AATTTTAGTCCTTATACTTTTTCAAATTTTGA
* * * *
79283735 AATTTTAATCCTTGTACTTTTTTAGATTTTGA
1 AATTTTAGTCCTTATACTTTTTCAAATTTTGA
79283767 AATTTTAGTC
1 AATTTTAGTC
79283777 TTGACTCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 15 0.42
32 21 0.58
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.53
Consensus pattern (32 bp):
AATTTTAGTCCTTATACTTTTTCAAATTTTGA
Found at i:79284766 original size:16 final size:18
Alignment explanation
Indices: 79284733--79284767 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
79284723 TGATTCTTTG
*
79284733 TATATTGAAATTTAAAAA
1 TATATTGAAATGTAAAAA
79284751 TATATT-AAATGTAAAAA
1 TATATTGAAATGTAAAAA
79284768 AAATGTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
TATATTGAAATGTAAAAA
Found at i:79287015 original size:17 final size:19
Alignment explanation
Indices: 79286993--79287071 Score: 76
Period size: 19 Copynumber: 4.4 Consensus size: 19
79286983 ATGGAAATAT
79286993 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
79287010 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
79287029 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
* * **
79287046 AATCTTAGATGTGATAAAC
1 AATCTTACATATGATATGC
79287065 AATCTTA
1 AATCTTA
79287072 GAAGATATGA
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
17 22 0.39
18 1 0.02
19 33 0.59
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:79287025 original size:19 final size:19
Alignment explanation
Indices: 79287001--79287073 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
79286991 ATAATCTTCA
79287001 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79287020 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79287039 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* **
79287056 GTGATAAACAATCTTAGA
1 ATGATATGCAATCTTAGA
79287074 AGATATGATT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 16 0.31
19 35 0.69
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:79288145 original size:21 final size:20
Alignment explanation
Indices: 79288102--79288166 Score: 78
Period size: 21 Copynumber: 3.2 Consensus size: 20
79288092 TACGCCAATT
*
79288102 AGAAGCTCGAA-AGCTGAAC
1 AGAAGCTCGAAGAGTTGAAC
*
79288121 AGAAGCTCGTAAGAGTTGAAA
1 AGAAGCTCG-AAGAGTTGAAC
*
79288142 AGAAACTCAGAAGAGTTGAAC
1 AGAAGCTC-GAAGAGTTGAAC
79288163 AGAA
1 AGAA
79288167 AGTAAAACAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 9 0.23
20 2 0.05
21 27 0.69
22 1 0.03
ACGTcount: A:0.46, C:0.14, G:0.26, T:0.14
Consensus pattern (20 bp):
AGAAGCTCGAAGAGTTGAAC
Found at i:79296493 original size:26 final size:26
Alignment explanation
Indices: 79296464--79296567 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
79296454 ATTCCCATCT
*
79296464 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
79296490 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
79296516 TAGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
79296542 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
79296568 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:79298365 original size:42 final size:42
Alignment explanation
Indices: 79298302--79298428 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
79298292 CTTCGTTTTC
** *
79298302 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
* *
79298345 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
79298386 TCGATGCCATAGCCCAACTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
79298427 TC
1 TC
79298429 TCACTGATGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 10 0.13
42 63 0.84
43 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:79298488 original size:47 final size:46
Alignment explanation
Indices: 79298387--79298510 Score: 160
Period size: 47 Copynumber: 2.7 Consensus size: 46
79298377 ATTCATATAT
* * * *
79298387 CGATGCCATAGCCCA-ACTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGA-TATGGTCTTATACGAAGCACATATCACAC
* * *
79298433 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
79298480 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
79298511 GAAATCACTT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 26 0.38
47 42 0.62
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:79298570 original size:31 final size:31
Alignment explanation
Indices: 79298535--79298683 Score: 219
Period size: 31 Copynumber: 4.8 Consensus size: 31
79298525 CTTGTCACTT
* *
79298535 GTAGCCGAAGCTACCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
79298566 GTAGCCGAAACTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
79298597 GTAGCCGGAA-CTACCACTTGTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
79298628 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
79298659 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
79298684 TGTCATTTGT
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 3 0.03
31 101 0.94
32 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:79298771 original size:50 final size:51
Alignment explanation
Indices: 79298659--79298787 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
79298649 CACTGATCAG
* *
79298659 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCTGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* *
79298710 ATAGCTGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCTGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
*
79298760 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCTGAAGCTATCACTTATCACTTGT
79298788 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCTGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:79301749 original size:104 final size:103
Alignment explanation
Indices: 79301618--79302042 Score: 437
Period size: 104 Copynumber: 4.1 Consensus size: 103
79301608 TTATATACAA
* * *
79301618 ATTACATAAAAAAATCACAAAACACTAAACTAAACATTGACAATTTATATAACTTAATCATAAAT
1 ATTAC-TAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAAT
*
79301683 TATTAACAAAATAATTATAAAATTATTTTTAAAAAATTAC
65 TACTAACAAAATAATTATAAAATT-TTTTTAAAAAATTAC
* *
79301723 ATTACCAAAAAAATCACAAAATACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
1 ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
*
79301788 ACTAACAAAATAACTAT--AATTTTTTTAAAAAAAATTAC
66 ACTAACAAAATAATTATAAAATTTTTTT--AAAAAATTAC
* *
79301826 ATTACTAAAAAAATCACAAAACCCTAAACTAAACACTAACAA-TT-TATAACCTAATCCCATAAC
1 ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAAT--CATAAA
* *
79301889 TTACTAACAAAATAAATATATGTAACA-TTTTTTAAGAAATTAC
64 TTACTAACAAAAT-AAT-TA--TAAAATTTTTTTAAAAAATTAC
* * * * *
79301932 ATTACTAAAAAAA--A-AAAA-AGC---ACAAAACACTAA-AAATT-TGTAACCTAATCATATAC
1 ATTACTAAAAAAATCACAAAACA-CTAAACTAAACACTAACAATTTATATAACCTAATCATAAAT
* * *
79301988 TACTAGCAAAAATAACTATAAAATTATTTTTTTTAAAAATTTAC
65 TACTAAC-AAAATAATTAT-AAA--A-TTTTTTTAAAAAATTAC
79302032 ATTACTAAAAA
1 ATTACTAAAAA
79302043 CTCTCAAAAC
Statistics
Matches: 277, Mismatches: 25, Indels: 41
0.81 0.07 0.12
Matches are distributed among these distances:
95 1 0.00
96 2 0.01
97 2 0.01
98 13 0.05
99 7 0.03
100 48 0.17
101 16 0.06
102 6 0.02
103 72 0.26
104 73 0.26
105 7 0.03
106 22 0.08
107 1 0.00
108 6 0.02
109 1 0.00
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (103 bp):
ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
ACTAACAAAATAATTATAAAATTTTTTTAAAAAATTAC
Found at i:79301872 original size:103 final size:102
Alignment explanation
Indices: 79301618--79301944 Score: 419
Period size: 103 Copynumber: 3.1 Consensus size: 102
79301608 TTATATACAA
* * *
79301618 ATTACATAAAAAAATCACAAAACACTAAACTAAACATTGACAATTTATATAACTTAATCATAAAT
1 ATTAC-TAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAAT
* *
79301683 TATTAACAAAATAATTATAAAATTATTTTTAAAAAATTAC
65 TACTAACAAAATAA--ATATAATTATTTTTAAAAAATTAC
* *
79301723 ATTACCAAAAAAATCACAAAATACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
1 ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
*
79301788 ACTAACAAAATAACTATAATT-TTTTTAAAAAAAATTAC
66 ACTAACAAAATAAATATAATTATTTTT--AAAAAATTAC
* *
79301826 ATTACTAAAAAAATCACAAAACCCTAAACTAAACACTAACAA-TT-TATAACCTAATCCCATAAC
1 ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAAT--CATAAA
*
79301889 TTACTAACAAAATAAATAT-ATGTAACATTTTTTAAGAAATTAC
64 TTACTAACAAAATAAATATAAT-T---A-TTTTTAAAAAATTAC
79301932 ATTACTAAAAAAA
1 ATTACTAAAAAAA
79301945 AAAAAAGCAC
Statistics
Matches: 198, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
101 16 0.08
102 10 0.05
103 73 0.37
104 67 0.34
105 5 0.03
106 22 0.11
108 5 0.03
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (102 bp):
ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
ACTAACAAAATAAATATAATTATTTTTAAAAAATTAC
Found at i:79302019 original size:207 final size:203
Alignment explanation
Indices: 79301618--79302042 Score: 465
Period size: 207 Copynumber: 2.1 Consensus size: 203
79301608 TTATATACAA
* * *
79301618 ATTACATAAAAAAATCACAAAACACTAAACTAAACATTGACAATTTATATAACTTAATCATAAAT
1 ATTAC-TAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAAT
*
79301683 TATTAACAAAATAATTATAAAATTATTTTTAAAAAATTACATTACCAAAAAAATCACAAAATACT
65 TACTAACAAAATAATTATAAAATTATTTTTAAAAAATTACATTACCAAAAAAA-CACAAAATAC-
* * *
79301748 AAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAATTTTTT
128 -AACAAAACACTAACAAATTATATAACCTAATCATAAACTACTAACAAAATAACTATAATTTTTT
79301813 TAAAAAAAATTAC
192 T-AAAAAAATTAC
* *
79301826 ATTACTAAAAAAATCACAAAACCCTAAACTAAACACTAACAA-TT-TATAACCTAATCCCATAAC
1 ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAAT--CATAAA
* * *
79301889 TTACTAACAAAATAAATATATGTAACA-T-TTTTTAAGAAATTACATTACTAAAAAAA-A-AAAA
64 TTACTAACAAAAT-AAT-TA--TAAAATTATTTTTAAAAAATTACATTACCAAAAAAACACAAAA
* * *
79301950 -AGC-ACAAAACACTAA-AAATT-TGTAACCTAATCATATACTACTAGCAAAAATAACTATAAAA
125 TA-CAACAAAACACTAACAAATTATATAACCTAATCATAAACTACTAAC-AAAATAACTAT---A
* *
79302011 TTATTTTTTTTAAAAATTTAC
185 --ATTTTTTTAAAAAAATTAC
79302032 ATTACTAAAAA
1 ATTACTAAAAA
79302043 CTCTCAAAAC
Statistics
Matches: 187, Mismatches: 17, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
201 21 0.11
202 15 0.08
203 11 0.06
205 12 0.06
206 27 0.14
207 60 0.32
208 8 0.04
209 28 0.15
210 1 0.01
211 4 0.02
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (203 bp):
ATTACTAAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATCATAAATT
ACTAACAAAATAATTATAAAATTATTTTTAAAAAATTACATTACCAAAAAAACACAAAATACAAC
AAAACACTAACAAATTATATAACCTAATCATAAACTACTAACAAAATAACTATAATTTTTTTAAA
AAAATTAC
Found at i:79302697 original size:25 final size:26
Alignment explanation
Indices: 79302669--79302725 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
79302659 TGGTATATAT
79302669 ATAA-ATATTTTTTAAAAATAAAATA
1 ATAATATATTTTTTAAAAATAAAATA
*
79302694 ATAATATTTTTTTTAAAAATAAAA-A
1 ATAATATATTTTTTAAAAATAAAATA
79302719 A-AATATA
1 ATAATATA
79302726 AAAAAAGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 5 0.17
25 6 0.21
26 18 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
ATAATATATTTTTTAAAAATAAAATA
Found at i:79303468 original size:31 final size:30
Alignment explanation
Indices: 79303429--79303488 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
79303419 GTAAGTTACA
**
79303429 ATTTGGTCATTGAACTATTCGCAAGTTTTC
1 ATTTGGTCATTGAACTATTCAAAAGTTTTC
79303459 ATTTAGGTCATTGAACTATTCAAAAGTTTT
1 ATTT-GGTCATTGAACTATTCAAAAGTTTT
79303489 TTTTTTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (30 bp):
ATTTGGTCATTGAACTATTCAAAAGTTTTC
Found at i:79305348 original size:4 final size:4
Alignment explanation
Indices: 79305339--79305401 Score: 126
Period size: 4 Copynumber: 15.8 Consensus size: 4
79305329 AAAGAAGGTA
79305339 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
79305387 TATG TATG TATG TAT
1 TATG TATG TATG TAT
79305402 AGTGTAAGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 59 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:79307079 original size:33 final size:35
Alignment explanation
Indices: 79307010--79307081 Score: 112
Period size: 33 Copynumber: 2.1 Consensus size: 35
79307000 TACTGTTTTG
* *
79307010 TTATGTTATGCTTGAAAGTTTTGTTAAGGGATTAC
1 TTATGTTATGCTTGAAAGTTTTGTTAAGAGACTAC
79307045 TTATGTT-TGCTTGAAAG-TTTGTTAAGAGACTAC
1 TTATGTTATGCTTGAAAGTTTTGTTAAGAGACTAC
79307078 TTAT
1 TTAT
79307082 ATTTATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 18 0.51
34 10 0.29
35 7 0.20
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.46
Consensus pattern (35 bp):
TTATGTTATGCTTGAAAGTTTTGTTAAGAGACTAC
Found at i:79310749 original size:6 final size:5
Alignment explanation
Indices: 79310730--79310771 Score: 57
Period size: 5 Copynumber: 8.0 Consensus size: 5
79310720 GCTTAATCCT
*
79310730 AATAA AATAA AATAA CAATAA TAATAA AACAA AATAA AATAA
1 AATAA AATAA AATAA -AATAA -AATAA AATAA AATAA AATAA
79310772 TATCTTCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 23 0.70
6 10 0.30
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:79310757 original size:22 final size:21
Alignment explanation
Indices: 79310729--79310773 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
79310719 AGCTTAATCC
*
79310729 TAATAAAATAAAATAACAATAA
1 TAATAAAACAAAATAA-AATAA
79310751 TAATAAAACAAAATAAAATAA
1 TAATAAAACAAAATAAAATAA
79310772 TA
1 TA
79310774 TCTTCTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (21 bp):
TAATAAAACAAAATAAAATAA
Found at i:79314065 original size:16 final size:16
Alignment explanation
Indices: 79314046--79314085 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
79314036 GGTGTTTTAA
79314046 TTTTCTTTTTCTCTTT
1 TTTTCTTTTTCTCTTT
*
79314062 TTTT-TATTTTCTTTTT
1 TTTTCT-TTTTCTCTTT
79314078 TTTTCTTT
1 TTTTCTTT
79314086 CTTTGGGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTCTTTTTCTCTTT
Found at i:79314086 original size:14 final size:14
Alignment explanation
Indices: 79314057--79314089 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
79314047 TTTCTTTTTC
79314057 TCTTTTTTTTATTT
1 TCTTTTTTTTATTT
79314071 TCTTTTTTTT-TCTT
1 TCTTTTTTTTAT-TT
79314085 TCTTT
1 TCTTT
79314090 GGGTCATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (14 bp):
TCTTTTTTTTATTT
Found at i:79314585 original size:10 final size:10
Alignment explanation
Indices: 79314566--79314598 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
79314556 CTTAAACTAA
79314566 AAAT-AAAAT
1 AAATAAAAAT
79314575 AAATAAAAAT
1 AAATAAAAAT
79314585 AAATAAAAAT
1 AAATAAAAAT
79314595 AAAT
1 AAAT
79314599 TTGGGTTGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:79321244 original size:19 final size:19
Alignment explanation
Indices: 79321228--79321269 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
79321218 AGCTTAATCC
79321228 TAATAAAATAAAATAATAA
1 TAATAAAATAAAATAATAA
*
79321247 TAATAAAATAAAACAA-AA
1 TAATAAAATAAAATAATAA
79321265 TAATA
1 TAATA
79321270 TCTTCTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (19 bp):
TAATAAAATAAAATAATAA
Found at i:79321534 original size:15 final size:17
Alignment explanation
Indices: 79321514--79321551 Score: 53
Period size: 15 Copynumber: 2.3 Consensus size: 17
79321504 TCAGGGGGAG
79321514 AAAATAAA-A-ATTGGA
1 AAAATAAATAGATTGGA
79321529 AAAATAAATAGATTGGA
1 AAAATAAATAGATTGGA
79321546 ATAAAT
1 A-AAAT
79321552 TATCATTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.40
16 1 0.05
17 7 0.35
18 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (17 bp):
AAAATAAATAGATTGGA
Found at i:79330563 original size:7 final size:7
Alignment explanation
Indices: 79330547--79330578 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
79330537 CGGTCAACAA
*
79330547 TCTTTAT
1 TCTTTGT
79330554 TCTTTGT
1 TCTTTGT
79330561 TCTTTGT
1 TCTTTGT
79330568 TCTTTGT
1 TCTTTGT
79330575 TCTT
1 TCTT
79330579 CACCCATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.03, C:0.16, G:0.09, T:0.72
Consensus pattern (7 bp):
TCTTTGT
Found at i:79332186 original size:17 final size:17
Alignment explanation
Indices: 79332136--79332191 Score: 71
Period size: 17 Copynumber: 3.3 Consensus size: 17
79332126 TGTATTTTTT
79332136 AAAAT-TAAAATCAT-A
1 AAAATATAAAATCATAA
*
79332151 AAAATATAGAATATAATAA
1 AAAATATA-AA-ATCATAA
79332170 AAAATATAAAATCATAA
1 AAAATATAAAATCATAA
79332187 AAAAT
1 AAAAT
79332192 TGAAAATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 5 0.14
16 2 0.06
17 13 0.37
18 6 0.17
19 9 0.26
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAATATAAAATCATAA
Found at i:79332206 original size:35 final size:34
Alignment explanation
Indices: 79332136--79332220 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 34
79332126 TGTATTTTTT
*
79332136 AAAATTAAAATCATAAAAATATAGAATATAATAA
1 AAAATTAAAATCATAAAAATATAGAAAATAATAA
* **
79332170 AAAATATAAAATCATAAAAA-ATTGAAAAT-ATTT
1 AAAAT-TAAAATCATAAAAATATAGAAAATAATAA
79332203 AAAATTGAAAAT-ATAAAA
1 AAAATT-AAAATCATAAAA
79332221 GAAAAAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
32 7 0.16
33 12 0.27
34 12 0.27
35 14 0.31
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (34 bp):
AAAATTAAAATCATAAAAATATAGAAAATAATAA
Found at i:79332220 original size:7 final size:7
Alignment explanation
Indices: 79332135--79332238 Score: 63
Period size: 7 Copynumber: 14.3 Consensus size: 7
79332125 TTGTATTTTT
79332135 TAAAAT-
1 TAAAATA
79332141 TAAAATCA
1 TAAAAT-A
79332149 TAAAAATA
1 T-AAAATA
*
79332157 TAGAATA
1 TAAAATA
79332164 T--AATA
1 TAAAATA
*
79332169 AAAAATA
1 TAAAATA
79332176 TAAAATCA
1 TAAAAT-A
*
79332184 TAAAAAA
1 TAAAATA
79332191 TTGAAAATA
1 -T-AAAATA
79332200 TTTAAAAT-
1 --TAAAATA
79332208 TGAAAATA
1 T-AAAATA
*
79332216 TAAAAGA
1 TAAAATA
*
79332223 AAAAATA
1 TAAAATA
79332230 TAAAATA
1 TAAAATA
79332237 TA
1 TA
79332239 TTATAAATAA
Statistics
Matches: 78, Mismatches: 9, Indels: 21
0.72 0.08 0.19
Matches are distributed among these distances:
5 4 0.05
6 7 0.09
7 39 0.50
8 11 0.14
9 15 0.19
10 2 0.03
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:79332485 original size:21 final size:22
Alignment explanation
Indices: 79332443--79332485 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
79332433 TAAAATTAAA
79332443 AAAATTATAAAAAAAGATTATAT
1 AAAATTATAAAAAAAGA-TATAT
79332466 AAAATTA-AAAATAAAG-TATA
1 AAAATTATAAAA-AAAGATATA
79332486 AAATACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.21
22 4 0.21
23 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (22 bp):
AAAATTATAAAAAAAGATATAT
Found at i:79349442 original size:17 final size:17
Alignment explanation
Indices: 79349420--79349453 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79349410 ATCCACTAAT
*
79349420 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
79349437 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
79349454 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:79354072 original size:17 final size:17
Alignment explanation
Indices: 79354050--79354083 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79354040 ATCCACTAAT
*
79354050 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
79354067 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
79354084 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:79355189 original size:13 final size:13
Alignment explanation
Indices: 79355171--79355234 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
79355161 AGTTTGGCAA
79355171 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
79355184 TGCTTTTGATAAG
1 TGCTTTTGAAAAG
* * *
79355197 TACTGTGGAAAAG
1 TGCTTTTGAAAAG
*
79355210 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
79355223 TGCTTTTGAAAA
1 TGCTTTTGAAAA
79355235 ATTTGGTTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:79355233 original size:26 final size:26
Alignment explanation
Indices: 79355171--79355234 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
79355161 AGTTTGGCAA
*
79355171 TGCTTTTGAAAAGTGCTTTTGATAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
* * *
79355197 TACTGTGGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
79355223 TGCTTTTGAAAA
1 TGCTTTTGAAAA
79355235 ATTTGGTTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.38
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAGAAG
Found at i:79355531 original size:33 final size:33
Alignment explanation
Indices: 79355436--79355531 Score: 76
Period size: 34 Copynumber: 2.9 Consensus size: 33
79355426 TAAAATATAA
*
79355436 ATTTTAAATATTTTTAAGAAATAAATATT-AATTAT
1 ATTTTAAATA--TTTAA-ATATAAATATTAAATTAT
* *
79355471 -TTATAAA-ATTT-AAT-TAGAGTATATAAATTAT
1 ATTTTAAATATTTAAATATA-AATAT-TAAATTAT
*
79355502 ATTTTAAATATTTAAATATAACTATTAAAT
1 ATTTTAAATATTTAAATATAAATATTAAAT
79355532 ATTTGTAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
28 2 0.04
29 5 0.10
30 2 0.04
31 9 0.18
32 6 0.12
33 10 0.20
34 13 0.27
35 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (33 bp):
ATTTTAAATATTTAAATATAAATATTAAATTAT
Found at i:79357350 original size:29 final size:26
Alignment explanation
Indices: 79357318--79357377 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
79357308 TTGTTTAAAT
79357318 TATAAAATTATTATTTTAAAATTTTCTTG
1 TATAAAA-TATTATTTTAAAA-TTT-TTG
** *
79357347 TATATTATATTGTTTTAAAATTTTTG
1 TATAAAATATTATTTTAAAATTTTTG
79357373 TATAA
1 TATAA
79357378 TATTTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.26
27 3 0.11
28 12 0.44
29 5 0.19
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (26 bp):
TATAAAATATTATTTTAAAATTTTTG
Found at i:79357503 original size:26 final size:26
Alignment explanation
Indices: 79357470--79357522 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
79357460 TTTATATGCA
* *
79357470 ATTTCTTTTAAATTTATT-TATATAT
1 ATTTCTTTCAAATCTATTATATATAT
*
79357495 ATTTCCTTTCAAATCTATTATGTATAT
1 ATTT-CTTTCAAATCTATTATATATAT
79357522 A
1 A
79357523 GTTTATTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 12 0.52
27 7 0.30
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (26 bp):
ATTTCTTTCAAATCTATTATATATAT
Found at i:79360387 original size:20 final size:21
Alignment explanation
Indices: 79360362--79360401 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
79360352 TTTATTTGTC
79360362 TTTTGTATTAT-TAT-TTCAAT
1 TTTTGT-TTATCTATGTTCAAT
79360382 TTTTGTTTATCTATGTTCAA
1 TTTTGTTTATCTATGTTCAA
79360402 AACTTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 9 0.50
21 5 0.28
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTTGTTTATCTATGTTCAAT
Found at i:79363519 original size:16 final size:15
Alignment explanation
Indices: 79363490--79363532 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
79363480 TAATGATGAA
79363490 ATAATAAT-AATAAT
1 ATAATAATAAATAAT
79363504 AGTGAA-AATAAATAAT
1 A-T-AATAATAAATAAT
79363520 ATAATAATAAATA
1 ATAATAATAAATA
79363533 TAATAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:79363525 original size:12 final size:13
Alignment explanation
Indices: 79363476--79363542 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 13
79363466 ACATATATGT
*
79363476 ATAATAATGATGAA
1 ATAATAATAAT-AA
79363490 ATAATAATAAT-A
1 ATAATAATAATAA
*
79363502 ATAGTGAA-AATAA
1 ATAAT-AATAATAA
79363515 ATAATATAATAATAA
1 AT-A-ATAATAATAA
*
79363530 AT-ATAATAGTAA
1 ATAATAATAATAA
79363542 A
1 A
79363543 AAAAGATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
12 18 0.41
13 5 0.11
14 13 0.30
15 8 0.18
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (13 bp):
ATAATAATAATAA
Found at i:79363536 original size:33 final size:33
Alignment explanation
Indices: 79363489--79363553 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
79363479 ATAATGATGA
*
79363489 AATAATAATAATAATAGTGAAAATAA-ATAATAT
1 AATAATAATAATAATAGT-AAAAAAAGATAATAT
79363522 AATAATAA-ATATAATAGTAAAAAAAGATAATA
1 AATAATAATA-ATAATAGTAAAAAAAGATAATA
79363554 CTATATGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 7 0.24
33 22 0.76
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (33 bp):
AATAATAATAATAATAGTAAAAAAAGATAATAT
Found at i:79363615 original size:3 final size:3
Alignment explanation
Indices: 79363600--79363665 Score: 50
Period size: 3 Copynumber: 22.3 Consensus size: 3
79363590 TGCTAATATG
* * *
79363600 AAT AAT GAT AAT AAT ACT AAT AAT AAT AAT AA- AAT -AT GAAG AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AA-T
79363645 -AT ATAT AAT -AT AAT AAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT A
79363666 TTAAAATACA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
2 7 0.14
3 39 0.78
4 4 0.08
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:79363638 original size:38 final size:38
Alignment explanation
Indices: 79363594--79363673 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
79363584 TAAATATGCT
*
79363594 AATATGAATAA-TGATA-ATAATACTAATAATAATAATAA
1 AATATGAAGAAGT-ATATATAATA-TAATAATAATAATAA
*
79363632 AATATGAAGAAGTATATATAATATAATAATAATATTAA
1 AATATGAAGAAGTATATATAATATAATAATAATAATAA
79363670 AATA
1 AATA
79363674 CAATAATTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 31 0.82
39 7 0.18
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (38 bp):
AATATGAAGAAGTATATATAATATAATAATAATAATAA
Found at i:79363704 original size:26 final size:26
Alignment explanation
Indices: 79363644--79363708 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
79363634 TATGAAGAAG
*
79363644 TATATATAATATAATAATAATATTAA
1 TATAAATAATATAATAATAATATTAA
*
79363670 AATACAATAAT-TAA-AAGTAATATTATA
1 TATA-AATAATATAATAA-TAATATTA-A
79363697 TATAAAT-ATATA
1 TATAAATAATATA
79363709 CAATATTCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 4 0.12
26 19 0.59
27 9 0.28
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
TATAAATAATATAATAATAATATTAA
Found at i:79364881 original size:22 final size:22
Alignment explanation
Indices: 79364824--79364881 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
79364814 TACGAGGACT
* *
79364824 GTGGAGGTATGGGACTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
79364846 GTGGGGGTATGGGGCTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
79364868 GTGGGGGTATGGGG
1 GTGGGGGTATGGGG
79364882 GTTGCTTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.12, C:0.03, G:0.55, T:0.29
Consensus pattern (22 bp):
GTGGGGGTATGGGGCTGTTGTA
Found at i:79365742 original size:74 final size:73
Alignment explanation
Indices: 79365621--79365856 Score: 253
Period size: 74 Copynumber: 3.2 Consensus size: 73
79365611 ATAGACATTA
* * * ** * *
79365621 AAAACAAAAACTGAAAATATCTCAGCATGTGAACAAAGGCTCAACTCACTTTTCGCAATATGAGT
1 AAAACAAAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
79365686 TGATTTTTG
66 TGA-TTTTG
* ** *
79365695 AAAACAGATTTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAAAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
** *
79365760 TGAAATTA
66 TGATTTTG
* * * *
79365768 AAACACAAAAATTGAAAATACGTCAGC--GTGCCCCGAGGCTCAACTCACCTCTAGCGATATGAG
1 AAA-ACAAAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
79365831 TTGATTTTG
65 TTGATTTTG
*
79365840 AAAAACCAAAATT-AAAA
1 -AAAACAAAAATTGAAAA
79365857 GGCTTAACTC
Statistics
Matches: 134, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
71 4 0.03
72 47 0.35
73 8 0.06
74 75 0.56
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (73 bp):
AAAACAAAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTG
Found at i:79365949 original size:120 final size:123
Alignment explanation
Indices: 79365731--79365958 Score: 345
Period size: 120 Copynumber: 1.9 Consensus size: 123
79365721 ATGTGACCCG
* *
79365731 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACGTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-AATT-AAACACAAAAATCGAAAATACCTCAGCG
*
79365796 TGCCCCGAGGCTCAACTCACCTCTAGCGATATGAGTTGATTTTGAAAAACCAAAATTAAA
64 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAATTAAA
* * *
79365856 AGGCTTAACTCACCTCTCGCGATATGAGTTG-A-T-AACACAAAAGTCGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAACACAAAAATCGAAAATACCTCAGCGTG
* *
79365918 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
79365959 TTTGAAAAAC
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
120 64 0.67
122 1 0.01
123 1 0.01
125 29 0.31
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAACACAAAAATCGAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAATTAAA
Found at i:79387943 original size:21 final size:20
Alignment explanation
Indices: 79387917--79387967 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
79387907 ACATATATGT
79387917 ATAATAATGATGAAAATAATA
1 ATAATAAT-ATGAAAATAATA
79387938 ATAATAATAGTGAAAATAAATA
1 ATAATAATA-TGAAAAT-AATA
79387960 AT-ATAATA
1 ATAATAATA
79387968 ATAAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.04
21 21 0.75
22 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (20 bp):
ATAATAATATGAAAATAATA
Found at i:79387956 original size:33 final size:33
Alignment explanation
Indices: 79387929--79387996 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
79387919 AATAATGATG
*
79387929 AAAATAAT-AATAATAATAGTGAAAATAAATAAT
1 AAAATAATAAAT-ATAATAGTAAAAATAAATAAT
* *
79387962 ATAATAATAAATATAATAGTAAAAAAAAGATAAT
1 AAAATAATAAATATAATAGTAAAAATAA-ATAAT
79387996 A
1 A
79387997 CTATATGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
33 21 0.70
34 9 0.30
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (33 bp):
AAAATAATAAATATAATAGTAAAAATAAATAAT
Found at i:79387961 original size:16 final size:15
Alignment explanation
Indices: 79387932--79387974 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
79387922 AATGATGAAA
79387932 ATAATAAT-AATAAT
1 ATAATAATAAATAAT
79387946 AGTGAA-AATAAATAAT
1 A-T-AATAATAAATAAT
79387962 ATAATAATAAATA
1 ATAATAATAAATA
79387975 TAATAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (15 bp):
ATAATAATAAATAAT
Found at i:79389285 original size:22 final size:22
Alignment explanation
Indices: 79389228--79389285 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
79389218 TACGAGGACT
* *
79389228 GTGGAGGTATGGGACTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
*
79389250 GTGGGGGTACGGGGCTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
79389272 GTGGGGGTATGGGG
1 GTGGGGGTATGGGG
79389286 TTGCTTCATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.12, C:0.05, G:0.55, T:0.28
Consensus pattern (22 bp):
GTGGGGGTATGGGGCTGTTGTA
Found at i:79392221 original size:50 final size:51
Alignment explanation
Indices: 79392144--79392272 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
79392134 GACCATGGCA
79392144 ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGACAAA-TG
* * *
79392195 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGACAAATG
* * *
79392245 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
79392273 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACATATCTAATCAAGGACAAATG
Found at i:79392286 original size:31 final size:31
Alignment explanation
Indices: 79392248--79392427 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
79392238 ACAAATGACA
*
79392248 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
79392279 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
79392310 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
79392341 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
79392372 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
79392403 AGTGAATAGTGGTAGATTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
79392428 AAGTGACAAG
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
30 2 0.01
31 135 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:79392522 original size:47 final size:46
Alignment explanation
Indices: 79392452--79392616 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 46
79392442 GAGTGATTTC
* *
79392452 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
79392498 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
79392545 CGTATAAGACCATAGCTGCGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
79392587 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
79392617 ATTATGTGAA
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
41 7 0.07
42 29 0.28
46 27 0.26
47 41 0.39
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:79392604 original size:42 final size:43
Alignment explanation
Indices: 79392549--79392660 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 43
79392539 GTGATTCGTA
* *
79392549 TAAGACCATAGCTGCGCTATGGCATCGA-TATATGAATATGTG
1 TAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGATGTG
* *
79392591 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGATGTG
* *
79392633 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGAGCTATGGCATCGA
79392661 GAAAACGAAG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (43 bp):
TAAGACCATAGCTGAGCTATGGCATCGATTATATGAAGATGTG
Found at i:79393611 original size:15 final size:15
Alignment explanation
Indices: 79393587--79393628 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
79393577 GATCAGTACA
*
79393587 TTATAATATTAACTAG
1 TTATATTATTAAC-AG
79393603 -TATATTATTAACAG
1 TTATATTATTAACAG
79393617 TTATATTGATTA
1 TTATATT-ATTA
79393629 TTTGTTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 17 0.74
16 4 0.17
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.48
Consensus pattern (15 bp):
TTATATTATTAACAG
Found at i:79394777 original size:29 final size:29
Alignment explanation
Indices: 79394744--79394807 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
79394734 CTCAAAACTT
* *
79394744 ATTTTATTTAATTATAATATATTTTTAAA
1 ATTTTATTTAATTAAAATATATTTATAAA
* *
79394773 ATTTTATTTTATTAAAATTTATTTATAAA
1 ATTTTATTTAATTAAAATATATTTATAAA
*
79394802 TTTTTA
1 ATTTTA
79394808 CAAATATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTATTTAATTAAAATATATTTATAAA
Found at i:79394795 original size:15 final size:15
Alignment explanation
Indices: 79394746--79394796 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
79394736 CAAAACTTAT
* *
79394746 TTTATTTAATTATAA
1 TTTATTTTATTAAAA
*
79394761 TATA-TTT-TTAAAA
1 TTTATTTTATTAAAA
79394774 TTTTATTTTATTAAAA
1 -TTTATTTTATTAAAA
79394790 TTTATTT
1 TTTATTT
79394797 ATAAATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 5 0.17
14 5 0.17
15 13 0.45
16 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATTTTATTAAAA
Found at i:79400575 original size:17 final size:17
Alignment explanation
Indices: 79400553--79400586 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79400543 ATCCACTAAT
*
79400553 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
79400570 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
79400587 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:79405204 original size:17 final size:17
Alignment explanation
Indices: 79405182--79405215 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79405172 ATCCACTAAT
*
79405182 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
79405199 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
79405216 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:79406121 original size:9 final size:10
Alignment explanation
Indices: 79406105--79406129 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79406095 TTTTCTATTT
79406105 ATTTTTTTAA
1 ATTTTTTTAA
79406115 ATTTTTTTAA
1 ATTTTTTTAA
79406125 ATTTT
1 ATTTT
79406130 AAATTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:79408441 original size:18 final size:19
Alignment explanation
Indices: 79408401--79408442 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
79408391 TATTTTGTTG
79408401 TTATTGTATAATTCTTATT
1 TTATTGTATAATTCTTATT
79408420 TTATTGT-TAATT-TTATT
1 TTATTGTATAATTCTTATT
79408437 ATTATT
1 -TTATT
79408443 TTAGATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 10 0.45
19 7 0.32
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (19 bp):
TTATTGTATAATTCTTATT
Found at i:79415433 original size:64 final size:64
Alignment explanation
Indices: 79415332--79415459 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
79415322 CCATGATGGC
*
79415332 CTCTTATTAGGAGTCAACTTACATATATCCTTATTTATTCAAAAATTTGATAAATTAGTCTCTT
1 CTCTTATTAGGAGTCAACTTACATATATCCTTATTTATTCAAAAATTTAATAAATTAGTCTCTT
79415396 CTCTTATTAGGAGTCAACTTACATATATCCTTATTTATTCAAAAATTTAATAAATTAGTCTCTT
1 CTCTTATTAGGAGTCAACTTACATATATCCTTATTTATTCAAAAATTTAATAAATTAGTCTCTT
79415460 TATGTTAAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.44
Consensus pattern (64 bp):
CTCTTATTAGGAGTCAACTTACATATATCCTTATTTATTCAAAAATTTAATAAATTAGTCTCTT
Found at i:79415470 original size:19 final size:19
Alignment explanation
Indices: 79415446--79415504 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
79415436 AAAAATTTAA
79415446 TAAATTAGTCTCTTTATGT
1 TAAATTAGTCTCTTTATGT
*
79415465 TAAATTAAG------TATGA
1 TAAATT-AGTCTCTTTATGT
79415479 TAAATTAGTCTCTTTATGT
1 TAAATTAGTCTCTTTATGT
79415498 TAAATTA
1 TAAATTA
79415505 AGTAGCAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
13 2 0.06
14 10 0.32
19 17 0.55
20 2 0.06
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.47
Consensus pattern (19 bp):
TAAATTAGTCTCTTTATGT
Found at i:79415482 original size:33 final size:33
Alignment explanation
Indices: 79415445--79415508 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
79415435 CAAAAATTTA
79415445 ATAAATTAGTCTCTTTATGTTAAATTAAGTATG
1 ATAAATTAGTCTCTTTATGTTAAATTAAGTATG
79415478 ATAAATTAGTCTCTTTATGTTAAATTAAGTA
1 ATAAATTAGTCTCTTTATGTTAAATTAAGTA
79415509 GCAAACGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (33 bp):
ATAAATTAGTCTCTTTATGTTAAATTAAGTATG
Found at i:79415885 original size:65 final size:64
Alignment explanation
Indices: 79415783--79415914 Score: 255
Period size: 65 Copynumber: 2.0 Consensus size: 64
79415773 ATTTTACCAT
79415783 TTTTTTAGGAACAATTACTAATTAAGTTTGCATTTTATTATTATTATTACTATTATTATTATTCA
1 TTTTTTAGGAACAATTACTAATTAAGTTTGCATTTTATTATTATTATTACTATTATTATTATT-A
79415848 TTTTTTAGGAACAATTACTAATTAAGTTTGCATTTTATTATTATTATTACTATTATTATTATTA
1 TTTTTTAGGAACAATTACTAATTAAGTTTGCATTTTATTATTATTATTACTATTATTATTATTA
79415912 TTT
1 TTT
79415915 ATAGACATTT
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 4 0.06
65 63 0.94
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (64 bp):
TTTTTTAGGAACAATTACTAATTAAGTTTGCATTTTATTATTATTATTACTATTATTATTATTA
Found at i:79415908 original size:21 final size:20
Alignment explanation
Indices: 79415878--79415934 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
79415868 ATTAAGTTTG
*
79415878 CATTTTATTATTATTAT-TA
1 CATTTTATTATTATTATAGA
79415897 CTATTATTATTATTATTTATAGA
1 C-ATT-TTATTATTA-TTATAGA
79415920 CATTTTATTATTATT
1 CATTTTATTATTATT
79415935 GGTTGAAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 1 0.03
20 5 0.15
21 18 0.55
22 7 0.21
23 2 0.06
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
CATTTTATTATTATTATAGA
Found at i:79415934 original size:3 final size:3
Alignment explanation
Indices: 79415882--79415913 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
79415872 AGTTTGCATT
*
79415882 TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
79415914 TATAGACATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:79416073 original size:37 final size:37
Alignment explanation
Indices: 79416023--79416098 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
79416013 GAGTATAATC
79416023 TAATTAAATAGGTGATCGAATTTGTTGATCCGGATTT
1 TAATTAAATAGGTGATCGAATTTGTTGATCCGGATTT
79416060 TAATTAAATAGGTGATCGAATTTGTTGATCCGGATTT
1 TAATTAAATAGGTGATCGAATTTGTTGATCCGGATTT
79416097 TA
1 TA
79416099 TAATTTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (37 bp):
TAATTAAATAGGTGATCGAATTTGTTGATCCGGATTT
Found at i:79416330 original size:6 final size:6
Alignment explanation
Indices: 79416319--79416345 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
79416309 CAGACGCCGA
79416319 CCCTCT CCCTCT CCCTCT CCCTCT CCC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCC
79416346 CACCGACCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (6 bp):
CCCTCT
Found at i:79421370 original size:13 final size:13
Alignment explanation
Indices: 79421334--79421371 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
79421324 TATTTAAGAA
79421334 ATAATAATTATAAT
1 ATAATAA-TATAAT
*
79421348 -TAAAAATATAAT
1 ATAATAATATAAT
79421360 ATAATAATATAA
1 ATAATAATATAA
79421372 AGTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:79422872 original size:132 final size:131
Alignment explanation
Indices: 79422650--79423019 Score: 343
Period size: 132 Copynumber: 2.8 Consensus size: 131
79422640 TTCCGAAGAG
* * * ** * * *
79422650 ATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
1 ATATTCGATTGTTTTGAAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATT-CCCGAAT
** * * * * * ** *
79422715 TGCCAAGCATCGAATATCGCCTTCGTTTGAAAGGGTTTTT-AGAAA-ACGTGAGTG-AAATTTCG
65 TATCAAACACCGAGTATTGCATTCGTTTGAAAGGGTTTTTAAGAAATAC--GAGTGAAAACAT-A
79422777 AAGGA
127 AAGGA
* * * *
79422782 ATCTTCGATTGTTTTGAAAAAAATGAGAAATCACAACCCAACACGTTAGGGCACGATTCCCGAAT
1 ATATTCGATTGTTTTG-AAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATTCCCGAAT
* * *
79422847 TATCAAACACCGAGTATTGTATTCGTTTTGGAA-GGTTTTTAATAAATACGAGTGAAAACATAAA
65 TATCAAACACCGAGTATTGCATTCG-TTTGAAAGGGTTTTTAAGAAATACGAGTGAAAACATAAA
79422911 GGA
129 GGA
* * ** **
79422914 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCTAGTACGATAGGGCACAATTCTTGAATT
1 ATATTCGATTGTTTTGAAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATTCCCGAATT
* * **
79422979 ATCAAACACCGAGTATTGCCTTCGTTTTAAAGAATTTTTAA
66 ATCAAACACCGAGTATTGCATTCGTTTGAAAGGGTTTTTAA
79423020 TAGTTGTGAA
Statistics
Matches: 192, Mismatches: 40, Indels: 13
0.78 0.16 0.05
Matches are distributed among these distances:
130 5 0.03
131 69 0.36
132 70 0.36
133 46 0.24
134 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (131 bp):
ATATTCGATTGTTTTGAAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATTCCCGAATT
ATCAAACACCGAGTATTGCATTCGTTTGAAAGGGTTTTTAAGAAATACGAGTGAAAACATAAAGG
A
Found at i:79423017 original size:131 final size:132
Alignment explanation
Indices: 79422777--79423021 Score: 341
Period size: 131 Copynumber: 1.9 Consensus size: 132
79422767 TGAAATTTCG
* * * *
79422777 AAGGAATCTTCGATTGTTTTGAAAAAAATGAGAAATCACAACCCAACACGTTAGGGCACGATTCC
1 AAGGAATATTCGATTGTTTTGAAAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATTCC
* * *
79422842 CGAATTATCAAACACCGAGTATTGTATTCGTTTTGGAAGGTTTTTAATAAATACGAGTGAAAACA
66 CGAATTATCAAACACCGAGTATTGCATTCGTTTTGAAAGATTTTTAATAAATACGAGTGAAAACA
79422907 TA
131 TA
* * ** *
79422909 AAGGAATATTCGATTGTTTTG-AACAAACGAGAAATCACAACCTAGTACGATAGGGCACAATTCT
1 AAGGAATATTCGATTGTTTTGAAAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATTCC
* *
79422973 TGAATTATCAAACACCGAGTATTGCCTTCGTTTT-AAAGAATTTTTAATA
66 CGAATTATCAAACACCGAGTATTGCATTCGTTTTGAAAG-ATTTTTAATA
79423022 GTTGTGAAAC
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
130 3 0.03
131 75 0.77
132 20 0.20
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (132 bp):
AAGGAATATTCGATTGTTTTGAAAAAAACGAGAAATCACAACCCAACACGATAGGGCACAATTCC
CGAATTATCAAACACCGAGTATTGCATTCGTTTTGAAAGATTTTTAATAAATACGAGTGAAAACA
TA
Found at i:79424791 original size:50 final size:50
Alignment explanation
Indices: 79424667--79424915 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
79424657 GATAATAACA
* * ** * *
79424667 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
79424718 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
79424768 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
79424818 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
79424873 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
79424916 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:79424845 original size:100 final size:104
Alignment explanation
Indices: 79424666--79424915 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
79424656 TGATAATAAC
**
79424666 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
79424731 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
79424768 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
79424831 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
79424873 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
79424916 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:79425031 original size:13 final size:13
Alignment explanation
Indices: 79425010--79425040 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
79425000 GCTTGGATCA
*
79425010 TCATCAAATAAAT
1 TCATAAAATAAAT
79425023 TCATAAAATAAAT
1 TCATAAAATAAAT
79425036 TCATA
1 TCATA
79425041 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:79425288 original size:30 final size:30
Alignment explanation
Indices: 79425253--79425310 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
79425243 CCTCGACTCT
*
79425253 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
79425283 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
79425311 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:79429049 original size:131 final size:131
Alignment explanation
Indices: 79428828--79429348 Score: 889
Period size: 131 Copynumber: 4.0 Consensus size: 131
79428818 GTTTGTAATC
*
79428828 TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCATCTTC
1 TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTAGCTTAAATCTGCTTCACTGCATCTTC
* *
79428893 AGGAAGCCAAGATTCGTCATTTTCGATTTGCCCCACTGCAACTTTAGGGAGACAAGATCTACAAT
66 AGGAAGCCAAGATTCGTCATCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAAT
79428958 A
131 A
* * *
79428959 TTCAGCCTACTCCGCTACAATTTTAGGGAGCTAGGACTAGCTTAAATCTGCTTCACTGCATCGTC
1 TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTAGCTTAAATCTGCTTCACTGCATCTTC
*
79429024 AGGAAGCCAAGATTCGTCATCTTCGATTTGCCCCACTACAACTTCAGGGAGACAAGATCTACAAT
66 AGGAAGCCAAGATTCGTCATCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAAT
79429089 A
131 A
* * * *
79429090 TTCAGCCTACTCCACTACAATTTTAGAGAGCTAGGACTAGCTTAAATTTGCTTCACTGCAACTTC
1 TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTAGCTTAAATCTGCTTCACTGCATCTTC
* *
79429155 AGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTCCAACTTCAGGGAGACAAGATCTACAAT
66 AGGAAGCCAAGATTCGTCATCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAAT
*
79429220 C
131 A
*
79429221 TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCACTGCATCTTC
1 TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTAGCTTAAATCTGCTTCACTGCATCTTC
* *
79429286 AGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCAAGGAGACAAGATCTACA
66 AGGAAGCCAAGATTCGTCATCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACA
79429349 TTCTGTTTCA
Statistics
Matches: 368, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 368 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (131 bp):
TTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTAGCTTAAATCTGCTTCACTGCATCTTC
AGGAAGCCAAGATTCGTCATCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAAT
A
Found at i:79429471 original size:64 final size:64
Alignment explanation
Indices: 79429378--79429557 Score: 290
Period size: 64 Copynumber: 2.8 Consensus size: 64
79429368 GCTTATGCCG
* * *
79429378 AATAATTAGGATGCTATGATC-AACATGAATCAATTGTTCCTAACTAGATGTGATGTTTATGTCA
1 AATAATTAGAATGATATGATCGAA-ATGAATCAAATGTTCCTAACTAGATGTGATGTTTATGTCA
*
79429442 AATAATTAGAATGTTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTGATGTTTATGTCA
1 AATAATTAGAATGATATGATCGAAATGAATCAAATGTTCCTAACTAGATGTGATGTTTATGTCA
* *
79429506 AATAATTAGAATGATATGATCGAAATGAAACAAATGCTCCTAACTAGATGTG
1 AATAATTAGAATGATATGATCGAAATGAATCAAATGTTCCTAACTAGATGTG
79429558 TTATGAATGA
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
64 107 0.98
65 2 0.02
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.33
Consensus pattern (64 bp):
AATAATTAGAATGATATGATCGAAATGAATCAAATGTTCCTAACTAGATGTGATGTTTATGTCA
Found at i:79433078 original size:131 final size:131
Alignment explanation
Indices: 79432711--79433082 Score: 383
Period size: 132 Copynumber: 2.8 Consensus size: 131
79432701 TTCCGAAGAG
* * ** * *
79432711 ATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATT-CCCGAAT
** * * * ** ** ** *
79432776 TGCCAAGCATCGAATATCGCCTTCGTTTTAAAGGGTTTTTAGA-AAACGTGAGTAAAATTTCGAA
65 TATCAAACACCGAATATTGCCTTCGTTTTAAAGAATTTTTA-ATAAACACGAGTAAAACCTCAAA
79432840 GGA
129 GGA
* * * * *
79432843 ATCTTCGATTGTTTTGAAAAAAATGAGAAATCACAACCCAACACGTTAGGGCACGATTCCCGAAT
1 ATATTCGATTGTTTTG-AACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAAT
** *
79432908 TATCAAACACCGAATATTGTTTTCGTTTT--GGAATGTTTTTAATAAACACGAGTGAAAACCT-A
65 TATCAAACACCGAATATTGCCTTCGTTTTAAAGAA--TTTTTAATAAACACGAGT-AAAACCTCA
79432970 AAGGA
127 AAGGA
* * * *
79432975 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCTAGTACAATAGGGCACGATTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAATT
*
79433040 ATCAAACACCGAGTATTGCCTTCGTTTTAAAGAATTTTTAATA
66 ATCAAACACCGAATATTGCCTTCGTTTTAAAGAATTTTTAATA
79433083 GTTGTGAAAC
Statistics
Matches: 194, Mismatches: 39, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
130 1 0.01
131 76 0.39
132 77 0.40
133 40 0.21
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (131 bp):
ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAATT
ATCAAACACCGAATATTGCCTTCGTTTTAAAGAATTTTTAATAAACACGAGTAAAACCTCAAAGG
A
Found at i:79435567 original size:32 final size:32
Alignment explanation
Indices: 79435526--79435589 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
79435516 ACGGGTGTCA
*
79435526 TGCTGGCGCTTGGCGTGAGGAGTATGGAGGCG
1 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
79435558 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
1 TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
79435590 AAGGCGTAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.12, C:0.17, G:0.50, T:0.20
Consensus pattern (32 bp):
TGCTGGCGCTTGGCGTGAGGAGTACGGAGGCG
Found at i:79439233 original size:31 final size:31
Alignment explanation
Indices: 79439195--79439405 Score: 305
Period size: 31 Copynumber: 6.8 Consensus size: 31
79439185 ACAAATGACA
* * *
79439195 AGTGAAAAGTTGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
79439226 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
79439257 AGTGAAAAGTGGTAGCTCCTGCTACCTAATT
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
79439288 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
79439319 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
79439350 AATGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
79439381 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
79439406 AAGTGACAAG
Statistics
Matches: 165, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 165 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:79439587 original size:42 final size:42
Alignment explanation
Indices: 79439528--79439638 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 42
79439518 TGATTCGTGG
* *
79439528 AAGACCATAGTTGGGCTATGGCATCGA-TATATGAATATGTGT
1 AAGACCATAG-TAGGCTATGGCATCGATTATATGAAGATGTGT
*
79439570 AAGACCATAGCTAGGCTATGGCATC-ATTATGTGAAGATGTGT
1 AAGACCATAG-TAGGCTATGGCATCGATTATATGAAGATGTGT
* *
79439612 AAGACCATAGTTGAACTATGGCATCGA
1 AAGACCATAGTAG-GCTATGGCATCGA
79439639 GAAAACGAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
41 3 0.05
42 56 0.93
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (42 bp):
AAGACCATAGTAGGCTATGGCATCGATTATATGAAGATGTGT
Done.