Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 247 of 253
Found at i:79441767 original size:44 final size:44
Alignment explanation
Indices: 79441703--79441797 Score: 172
Period size: 44 Copynumber: 2.1 Consensus size: 44
79441693 AGGTGTTATA
79441703 TATACTTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
1 TATA-TTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
*
79441748 TATATTGCTTATTTATTTTTAATGCAATATGTTTGAATTTGAAT
1 TATATTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
79441792 TATATT
1 TATATT
79441798 AGCACTACTG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 45 0.92
45 4 0.08
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.54
Consensus pattern (44 bp):
TATATTGCTTATTTATTTTTAAAGCAATATGTTTGAATTTGAAT
Found at i:79445684 original size:131 final size:130
Alignment explanation
Indices: 79445518--79445761 Score: 371
Period size: 131 Copynumber: 1.9 Consensus size: 130
79445508 GTGAAATTCT
* * ** *
79445518 AAAGGGATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCATGATAGGGCACTATTCC
1 AAAGGAATATTCGATTATTTTGAACAAACAAGAAATCGCAACCCAGCACAATAGGGCACGATT-C
*
79445583 CCGAATTGCCAAACATCAAACATTACCTTCGTTTTGAAGAATTTTTAAAGACATGGGTGAAAAAC
65 CCGAATTGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAAAGACATGGGTGAAAAAC
79445648 A
130 A
*
79445649 AAAGGAATATTCGATTATTTTGAACAAGCAAGAAATCGCAACCCAGCACAATAGGGCACGATTCC
1 AAAGGAATATTCGATTATTTTGAACAAACAAGAAATCGCAACCCAGCACAATAGGGCACGATTCC
* * ** *
79445714 CGAATTGTCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
66 CGAATTGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAAA
79445762 TGAATAATTA
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
130 44 0.44
131 57 0.56
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (130 bp):
AAAGGAATATTCGATTATTTTGAACAAACAAGAAATCGCAACCCAGCACAATAGGGCACGATTCC
CGAATTGCCAAACATCAAACATTACCTTCGTTTTAAAGAATTTTTAAAGACATGGGTGAAAAACA
Found at i:79445777 original size:131 final size:131
Alignment explanation
Indices: 79445423--79445761 Score: 357
Period size: 131 Copynumber: 2.6 Consensus size: 131
79445413 GTCCAATGAA
* ** * * * ** * *
79445423 AAATCGAAACCCAGCACGGTAGGGTACGATTCCCCGAATTTCCAAACTTTGAACATTGCCTT-AT
1 AAATCGCAACCCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTACCTTCGT
* * * ** * *
79445487 TTT--AG-A-GTTTAGAGAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACA
66 TTTAAAGAATTTTTAAAG-ACATAAGTGAAAAACAAAAGGAATATTCGATTATTTTGAACAAACA
*
79445548 GG
130 AG
** *
79445550 AAATCGCAACCCAGCATGATAGGGCACTATTCCCCGAATTGCCAAACATCAAACATTACCTTCGT
1 AAATCGCAACCCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTACCTTCGT
* ** *
79445615 TTTGAAGAATTTTTAAAGACATGGGTGAAAAACAAAAGGAATATTCGATTATTTTGAACAAGCAA
66 TTTAAAGAATTTTTAAAGACATAAGTGAAAAACAAAAGGAATATTCGATTATTTTGAACAAACAA
79445680 G
131 G
* * ** *
79445681 AAATCGCAACCCAGCACAATAGGGCACGATT-CCCGAATTGTCAAACATCGAGTATTGCCTTCGT
1 AAATCGCAACCCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTACCTTCGT
79445745 TTTAAAGAATTTTTAAA
66 TTTAAAGAATTTTTAAA
79445762 TGAATAATTA
Statistics
Matches: 178, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
127 52 0.29
128 4 0.02
130 46 0.26
131 70 0.39
132 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (131 bp):
AAATCGCAACCCAGCACAATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTACCTTCGT
TTTAAAGAATTTTTAAAGACATAAGTGAAAAACAAAAGGAATATTCGATTATTTTGAACAAACAA
G
Found at i:79447011 original size:10 final size:9
Alignment explanation
Indices: 79446992--79447028 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
79446982 CCCAAGGTGA
79446992 TTTTATTTT
1 TTTTATTTT
79447001 TTTTCATTTT
1 TTTT-ATTTT
79447011 TTTTA-TTT
1 TTTTATTTT
79447019 TTTTATTTT
1 TTTTATTTT
79447028 T
1 T
79447029 GAATTTATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.31
9 9 0.35
10 9 0.35
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTATTTT
Found at i:79449262 original size:130 final size:131
Alignment explanation
Indices: 79448839--79449337 Score: 438
Period size: 130 Copynumber: 3.8 Consensus size: 131
79448829 GGAATTCTGG
* * * * * ** * * * *
79448839 AGGGATCTTCGATTGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCA
1 AGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCCG
* * * * * **
79448904 AATCGCCAAACATCGAACATCGCCTTCGTTTTGAAAGG--TTTTAATAA-ACATGAA-TGAAAAC
66 AATTGCCAAATATCGAGCATCACCTTCGTTTT-AAAGGATTTTTAA-AAGAAAT-AAGTGAAATT
* *
79448965 CTAA
128 TTGA
* * ** * *
79448969 AGGAATATTCGATTATTTTGAAC-AACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCG
1 AGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCCG
*** * * * * * ** *
79449033 AATTATTAAACACCGAGTATTACCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTG
66 AATTGCCAAATATCGAGCATCACCTTCGTTTTAAAGGATTTTTAAAAGAAATAAGTGAAATTTTG
79449098 A
131 A
* * * * *
79449099 AGGGATATTTGATTATCTTAAGCAATCGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCAC
1 AGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCC-C
*
79449164 GAATTGCCAAATATCGCA-CATCACCTTCG-TTTAAGGGA-TTTTAAAAGAAATAAGTGAAATTT
65 GAATTGCCAAATATCG-AGCATCACCTTCGTTTTAAAGGATTTTTAAAAGAAATAAGTGAAATTT
79449226 TGA
129 TGA
* *
79449229 AGTGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGC
1 AGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCC-C
* ** * *
79449294 GAATTGCCAAATATCAAATATCCCCTTCGTTTTAAAGAATTTTT
65 GAATTGCCAAATATCGAGCATCACCTTCGTTTTAAAGGATTTTT
79449338 GAATGAATGA
Statistics
Matches: 296, Mismatches: 63, Indels: 18
0.79 0.17 0.05
Matches are distributed among these distances:
128 5 0.02
129 60 0.20
130 157 0.53
131 48 0.16
132 25 0.08
133 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (131 bp):
AGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCCG
AATTGCCAAATATCGAGCATCACCTTCGTTTTAAAGGATTTTTAAAAGAAATAAGTGAAATTTTG
A
Found at i:79454027 original size:131 final size:131
Alignment explanation
Indices: 79453670--79454195 Score: 496
Period size: 131 Copynumber: 4.0 Consensus size: 131
79453660 TATTTGTTTG
* * * ** *
79453670 AAAAT-TCCTTAAAACGAAGGCAATATTTGATTGCTTGAAAATTCGGGAATCATGCCCTATCGTG
1 AAAATCTCTTTAAAACGAAGGCAATACTCGA-TGCTTGGCAATTCGGGAATCGTGCCCTATCGTG
*** * * * *
79453734 CTGGGTTTTGATTTCTCATTTGTTCAAAATAATCGAATGTTCCTTTAGAATCTCACTTGTGTTTT
65 CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTTCCTTTAGAATTTCACTTATG-TTT
79453799 TCT
129 TCT
** * ** *
79453802 -AAATC-C--TAAATA--AAGGCAATGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTATCAT
1 AAAATCTCTTTAAA-ACGAAGGCAATACTCGATGCTTGGCAATTCG-GGAATCGTGCCCTATCGT
* * * * *
79453861 GCTGGGTTGCAATCTCTTGTTTCTTCAAAATAATCGAAGGTCCCTTCT-GAATTTCACTTACGTT
64 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTTCCTT-TAGAATTTCACTTATGTT
79453925 TTCT
128 TTCT
* * *
79453929 AAAATCTCTTTAAAACGAAGGCAATACTCGGTGCTTGGCAATTTGAGAATCGTGCCCTATCGTGC
1 AAAATCTCTTTAAAACGAAGGCAATACTCGATGCTTGGCAATTCGGGAATCGTGCCCTATCGTGC
* * * * * * * * *
79453994 TGGGTTGCGATTTCTCGTTTGTTCGAAACAATCGAAGATTCCTTTGGAATTCCACTCATATCTT-
66 TGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTTCCTTTAGAATTTCACTTATGTTTTC
79454058 T
131 T
* * * * *
79454059 AAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAACTTGGGGAATCGTGCCCTATCGTG
1 AAAATCTCTTTAAAACGAAGGCAATACTCGATGCTTGGCAA-TTCGGGAATCGTGCCCTATCGTG
* * ** *
79454124 CTAGGTTGCAATTTC-CTGTTTGTTCAAAATAATCTAATATTCCTTTAGAATTTCACTCATGTTT
65 CTGGGTTGCAATTTCTC-GTTTGTTCAAAATAATCGAAGGTTCCTTTAGAATTTCACTTATGTTT
*
79454188 TTT
129 TCT
79454191 AAAAT
1 AAAAT
79454196 TCTAAAAATA
Statistics
Matches: 321, Mismatches: 59, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
127 16 0.05
128 82 0.26
129 6 0.02
130 41 0.13
131 150 0.47
132 26 0.08
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (131 bp):
AAAATCTCTTTAAAACGAAGGCAATACTCGATGCTTGGCAATTCGGGAATCGTGCCCTATCGTGC
TGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTTCCTTTAGAATTTCACTTATGTTTTC
T
Found at i:79454852 original size:24 final size:23
Alignment explanation
Indices: 79454822--79454930 Score: 106
Period size: 24 Copynumber: 4.9 Consensus size: 23
79454812 TTCTAATATG
79454822 TATATATCATGTATATATTTTA-A
1 TATATAT-ATGTATATATTTTATA
79454845 TACTATATTATGTATATATTTTATA
1 TA-TATA-TATGTATATATTTTATA
*
79454870 TATATTATATGTATATATATT-T-
1 TATA-TATATGTATATATTTTATA
*
79454892 T-TA-ATAT-TATATTTTTTATA
1 TATATATATGTATATATTTTATA
*
79454912 TAAAT-TATGTATATATTTT
1 TATATATATGTATATATTTT
79454931 TTAATACCAC
Statistics
Matches: 72, Mismatches: 5, Indels: 19
0.75 0.05 0.20
Matches are distributed among these distances:
18 8 0.11
19 5 0.07
20 1 0.01
21 6 0.08
22 10 0.14
23 3 0.04
24 33 0.46
25 6 0.08
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TATATATATGTATATATTTTATA
Found at i:79454864 original size:11 final size:11
Alignment explanation
Indices: 79454818--79454887 Score: 59
Period size: 11 Copynumber: 6.0 Consensus size: 11
79454808 TTATTTCTAA
79454818 TATGTATATAT
1 TATGTATATAT
*
79454829 CATGTATATAT
1 TATGTATATAT
* *
79454840 TTTAATACTATAT
1 TAT-GTA-TATAT
79454853 TATGTATATAT
1 TATGTATATAT
* *
79454864 TTTATATATATT
1 TATGTATATA-T
79454876 ATATGTATATAT
1 -TATGTATATAT
79454888 ATTTTTAATA
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
11 24 0.53
12 6 0.13
13 15 0.33
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (11 bp):
TATGTATATAT
Found at i:79454885 original size:48 final size:47
Alignment explanation
Indices: 79454801--79455034 Score: 148
Period size: 48 Copynumber: 5.0 Consensus size: 47
79454791 GTTTTGTAAC
* *
79454801 ATTATTAT-TATTTCTAATATGTATATATCATGTATATATTTTAATACTAT
1 ATTATTATATATTT-T-ATATATAT-TAT-ATATATATATTTTAATACTAT
79454851 ATTATGTATATATTTTATATATATTATATGTATATATATTTT--TA--AT
1 ATTAT-TATATATTTTATATATATTATA--TATATATATTTTAATACTAT
* * * * *
79454897 ATTA-TAT-T-TTTTATATAAATTATGTATATATTTTTTAATACCAC
1 ATTATTATATATTTTATATATATTATATATATATATTTTAATACTAT
** * *
79454941 ATTATTCATATATTTT-T-TATATTATCCCATAAATACTTTCAATACTAT
1 ATTATT-ATATATTTTATATATATTAT-ATATATATA-TTTTAATACTAT
* * * *
79454989 ATTATGCATATATTTTTGTCTATATTATATATATA-CTTTTAATACT
1 ATTAT-TATATA-TTTTATATATATTATATATATATATTTTAATACT
79455035 CAATACTATT
Statistics
Matches: 146, Mismatches: 20, Indels: 38
0.72 0.10 0.19
Matches are distributed among these distances:
40 11 0.08
42 16 0.11
43 1 0.01
44 8 0.05
45 1 0.01
46 15 0.10
47 7 0.05
48 35 0.24
49 7 0.05
50 28 0.19
51 12 0.08
52 5 0.03
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.54
Consensus pattern (47 bp):
ATTATTATATATTTTATATATATTATATATATATATTTTAATACTAT
Found at i:79454903 original size:40 final size:39
Alignment explanation
Indices: 79454859--79454936 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
79454849 ATATTATGTA
*
79454859 TATATTTTATATAT-ATTATATGTATATATATTTTTAATAT
1 TATATTTTATATATAAAT-TATGTATATAT-TTTTTAATAT
*
79454899 TATATTTTTTATATAAATTATGTATATATTTTTTAATA
1 TATATTTTATATATAAATTATGTATATATTTTTTAATA
79454937 CCACATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
39 9 0.26
40 24 0.69
41 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (39 bp):
TATATTTTATATATAAATTATGTATATATTTTTTAATAT
Found at i:79454944 original size:26 final size:24
Alignment explanation
Indices: 79454899--79454962 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 24
79454889 TTTTTAATAT
79454899 TATATTTTTTATATAAATTATGT-A
1 TATATTTTTTATATAAATTAT-TCA
79454923 TATATTTTTTA-ATACCACATTATTCA
1 TATATTTTTTATATA--A-ATTATTCA
79454949 TATATTTTTTATAT
1 TATATTTTTTATAT
79454963 TATCCCATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.09
24 11 0.31
25 2 0.06
26 17 0.49
27 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (24 bp):
TATATTTTTTATATAAATTATTCA
Found at i:79454952 original size:39 final size:40
Alignment explanation
Indices: 79454877--79454952 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 40
79454867 ATATATATTA
** * * *
79454877 TATGTATATATATTTTTAATATTATATTTTTTATATAAAT
1 TATGTATATATATTTTTAATACCACATTATTCATATAAAT
79454917 TATGTATATAT-TTTTTAATACCACATTATTCATATA
1 TATGTATATATATTTTTAATACCACATTATTCATATA
79454953 TTTTTTATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
39 20 0.65
40 11 0.35
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (40 bp):
TATGTATATATATTTTTAATACCACATTATTCATATAAAT
Found at i:79455022 original size:23 final size:23
Alignment explanation
Indices: 79454985--79455028 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
79454975 ACTTTCAATA
* *
79454985 CTATATTATGCATATATTTTTGT
1 CTATATTATACATATACTTTTGT
*
79455008 CTATATTATATATATACTTTT
1 CTATATTATACATATACTTTT
79455029 AATACTCAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.57
Consensus pattern (23 bp):
CTATATTATACATATACTTTTGT
Found at i:79455320 original size:25 final size:25
Alignment explanation
Indices: 79455277--79455335 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
79455267 ATATATATAT
*
79455277 TTATATTTATGTACATATTGGTATT-
1 TTAT-TTTATGTAAATATTGGTATTG
* *
79455302 TTCTTTTATTGTAAATATTGTTATTG
1 TTATTTTA-TGTAAATATTGGTATTG
79455328 TTATTTTA
1 TTATTTTA
79455336 ATATTCTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.14
25 17 0.61
26 7 0.25
ACGTcount: A:0.25, C:0.03, G:0.10, T:0.61
Consensus pattern (25 bp):
TTATTTTATGTAAATATTGGTATTG
Found at i:79457044 original size:18 final size:18
Alignment explanation
Indices: 79457011--79457065 Score: 78
Period size: 17 Copynumber: 3.2 Consensus size: 18
79457001 CGTGATCCGA
*
79457011 TTGAAAA-ACGAGAATTT
1 TTGAAAACACGAAAATTT
*
79457028 TTTAAAACACGAAAA-TT
1 TTGAAAACACGAAAATTT
79457045 TTGAAAACACGAAAATTT
1 TTGAAAACACGAAAATTT
79457063 TTG
1 TTG
79457066 GGATCCGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (18 bp):
TTGAAAACACGAAAATTT
Found at i:79457621 original size:26 final size:27
Alignment explanation
Indices: 79457578--79457631 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
79457568 TATGTATACC
*
79457578 AAATAATACATAATAATACT-AAAATA
1 AAATAATACATAACAATACTGAAAATA
*
79457604 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATACTGAAAATA
79457631 A
1 A
79457632 TAAGCATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 16 0.67
27 7 0.29
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (27 bp):
AAATAATACATAACAATACTGAAAATA
Found at i:79457666 original size:18 final size:17
Alignment explanation
Indices: 79457640--79457693 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
79457630 AATAAGCATA
79457640 ATAATAAATATAATGATAT
1 ATAA-AAATATAAT-ATAT
*
79457659 ATAAAAATAATACTATAT
1 ATAAAAAT-ATAATATAT
*
79457677 ATAAAAGTAT-ATATAT
1 ATAAAAATATAATATAT
79457693 A
1 A
79457694 CGTACAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 15 0.48
19 8 0.26
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
ATAAAAATATAATATAT
Found at i:79457759 original size:3 final size:3
Alignment explanation
Indices: 79457751--79457804 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
79457741 AAAAATAAGT
* * * *
79457751 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
79457796 ATA ATA ATA
1 ATA ATA ATA
79457805 TGTGAAGGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:79457957 original size:12 final size:11
Alignment explanation
Indices: 79457925--79457967 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
79457915 TAGATAAATA
* *
79457925 AATATAAAAGA
1 AATATAATAGT
79457936 AATATAATAGT
1 AATATAATAGT
79457947 AATAGTAATAGT
1 AATA-TAATAGT
79457959 AATAATAAT
1 AAT-ATAAT
79457968 GCAAAGCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 13 0.46
12 14 0.50
13 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (11 bp):
AATATAATAGT
Found at i:79460172 original size:17 final size:17
Alignment explanation
Indices: 79460147--79460180 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79460137 AATATTGGAC
79460147 TTTTATTTTTTGTTTTG
1 TTTTATTTTTTGTTTTG
* *
79460164 TTTTGTTTTTTTTTTTG
1 TTTTATTTTTTGTTTTG
79460181 GGTTTCTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (17 bp):
TTTTATTTTTTGTTTTG
Found at i:79468446 original size:26 final size:27
Alignment explanation
Indices: 79468400--79468461 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
79468390 TAAAATAAAA
*
79468400 AATAAAAAAGGGAAAAATTGGTAATGG
1 AATAAAAAAGGGAAAAATTGGTAATAG
*
79468427 AATAAAAAAGGG-AAAGTTGGTAATAG
1 AATAAAAAAGGGAAAAATTGGTAATAG
79468453 AATAAAAAA
1 AATAAAAAA
79468462 AAGTAAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.18
Consensus pattern (27 bp):
AATAAAAAAGGGAAAAATTGGTAATAG
Found at i:79468469 original size:27 final size:26
Alignment explanation
Indices: 79468400--79468471 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
79468390 TAAAATAAAA
* * *
79468400 AATAAAAAAGGGAAAAATTGGTAATGG
1 AATAAAAAAAGG-AAAGTTGGTAATAG
*
79468427 AATAAAAAAGGGAAAGTTGGTAATAG
1 AATAAAAAAAGGAAAGTTGGTAATAG
*
79468453 AATAAAAAAAAGTAAAGTT
1 AAT-AAAAAAAGGAAAGTT
79468472 TTTTTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 15 0.38
27 25 0.62
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.19
Consensus pattern (26 bp):
AATAAAAAAAGGAAAGTTGGTAATAG
Found at i:79469389 original size:3 final size:3
Alignment explanation
Indices: 79469381--79469405 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
79469371 TTGATTTTAC
79469381 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
79469406 CCTAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79470048 original size:3 final size:3
Alignment explanation
Indices: 79470040--79470114 Score: 60
Period size: 3 Copynumber: 24.7 Consensus size: 3
79470030 CTATCATTGC
* * * *
79470040 ATT ATT ATT ATT AATT ATT ATT ATT ATT ATT ATT GTT GTT GTT GTT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
79470086 GTT GTT GTT GTT ATT ATT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
79470115 CATTGTTTGT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
3 64 0.96
4 3 0.04
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:79470636 original size:132 final size:132
Alignment explanation
Indices: 79470393--79470654 Score: 337
Period size: 132 Copynumber: 2.0 Consensus size: 132
79470383 TTATTCGTTT
* ** * * * *
79470393 AAAAATTCTTTAAAACGGAGACGATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATCATG
1 AAAAATTCTTTAAAACGAAGAAAATGTTCGACGTTCAGCAATTCAGGGAAACGTGCCCTATCATG
* * * * * * * *
79470458 CTGGGTTGTAATTTCTTGTTTGTCCAAAATAATCGGATGTCTCTTTAGAATTTCGTTCATGTTTT
66 CTGGATTGCAATTTCTCGTTTGTCCAAAATAATCGAATATCCCTTTA-AATTTCATTCACGTTTT
79470523 CTA
130 CTA
* * *
79470526 AAAAATT-TTTAAAACGAAGAAAATGTTTGACGTTCGGCAATTCAGGGAAACGTGCCCTATCGTG
1 AAAAATTCTTTAAAACGAAGAAAATGTTCGACGTTCAGCAATTCAGGGAAACGTGCCCTATCATG
*
79470590 CTGGATTGCAATTTCTCGTTTGTGCAAAATAATCGAATATCCCTTTAAATTTCATTCACGTTTTC
66 CTGGATTGCAATTTCTCGTTTGTCCAAAATAATCGAATATCCCTTTAAATTTCATTCACGTTTTC
79470655 CAAAGCGAGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
131 16 0.15
132 87 0.79
133 7 0.06
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (132 bp):
AAAAATTCTTTAAAACGAAGAAAATGTTCGACGTTCAGCAATTCAGGGAAACGTGCCCTATCATG
CTGGATTGCAATTTCTCGTTTGTCCAAAATAATCGAATATCCCTTTAAATTTCATTCACGTTTTC
TA
Found at i:79473470 original size:17 final size:17
Alignment explanation
Indices: 79473429--79473470 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
79473419 AAGTAGAAGG
79473429 ATATATGAAAATAATACT
1 ATATAT-AAAATAATACT
*
79473447 ATTTATAAAATATATA-T
1 ATATATAAAATA-ATACT
79473464 ATATATA
1 ATATATA
79473471 TGCATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATATAAAATAATACT
Found at i:79473490 original size:26 final size:26
Alignment explanation
Indices: 79473451--79473512 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
79473441 AATACTATTT
* *
79473451 ATAAAATATATATA-TATATATGCATA
1 ATAAAATACATATACTA-ATATGAATA
* *
79473477 ATAAAATACGTATACTAATATTAATA
1 ATAAAATACATATACTAATATGAATA
79473503 ATAAATATAC
1 ATAAA-ATAC
79473513 TAGGAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (26 bp):
ATAAAATACATATACTAATATGAATA
Found at i:79473959 original size:19 final size:19
Alignment explanation
Indices: 79473935--79473973 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
79473925 ATAATGGTTT
79473935 TAAAATACAAAAAAAATAA
1 TAAAATACAAAAAAAATAA
* *
79473954 TAAAATATAATAAAAATAA
1 TAAAATACAAAAAAAATAA
79473973 T
1 T
79473974 GAAGTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (19 bp):
TAAAATACAAAAAAAATAA
Found at i:79474036 original size:42 final size:44
Alignment explanation
Indices: 79473958--79474045 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 44
79473948 AAATAATAAA
*
79473958 ATATAATAAAAATAATGAAGTAATTAAAAACCATACTATATATAT
1 ATATAATAAAAATAA-GAAGTAATTAAAAACAATACTATATATAT
*
79474003 ATATAATAAAAAT-A-AAGTAA-TAAAAGATAATACTATATATAT
1 ATATAATAAAAATAAGAAGTAATTAAAA-ACAATACTATATATAT
79474045 A
1 A
79474046 CATGTACGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
41 5 0.12
42 21 0.52
44 1 0.03
45 13 0.32
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (44 bp):
ATATAATAAAAATAAGAAGTAATTAAAAACAATACTATATATAT
Found at i:79476446 original size:17 final size:17
Alignment explanation
Indices: 79476424--79476457 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79476414 TGGATGAAAG
79476424 TTTTGAAAAATTAGGGC
1 TTTTGAAAAATTAGGGC
79476441 TTTTGAAAAATTAGGGC
1 TTTTGAAAAATTAGGGC
79476458 AGTGTGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (17 bp):
TTTTGAAAAATTAGGGC
Found at i:79477584 original size:7 final size:7
Alignment explanation
Indices: 79477551--79477596 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
79477541 CCAGGCCCAC
79477551 TAAATAA
1 TAAATAA
*
79477558 -AAAAAA
1 TAAATAA
*
79477564 CAAACTAA
1 TAAA-TAA
79477572 -AAATAA
1 TAAATAA
79477578 TAAATAA
1 TAAATAA
79477585 TAAATAA
1 TAAATAA
79477592 TAAAT
1 TAAAT
79477597 CCATTAAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
6 8 0.24
7 24 0.71
8 2 0.06
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAATAA
Found at i:79477996 original size:26 final size:25
Alignment explanation
Indices: 79477967--79478020 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 25
79477957 CATGTATTCT
79477967 AAAAAAAAGAACATG-AAATTGAATAC
1 AAAAAAAAG-ACA-GAAAATTGAATAC
*
79477993 AAAAAAAAGAGAGAAAATTGAATAC
1 AAAAAAAAGACAGAAAATTGAATAC
79478018 AAA
1 AAA
79478021 GGATACAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 1 0.04
25 16 0.62
26 9 0.35
ACGTcount: A:0.69, C:0.06, G:0.13, T:0.13
Consensus pattern (25 bp):
AAAAAAAAGACAGAAAATTGAATAC
Found at i:79478947 original size:22 final size:20
Alignment explanation
Indices: 79478902--79478986 Score: 64
Period size: 19 Copynumber: 3.9 Consensus size: 20
79478892 TTCATAAATT
79478902 TTTTATTTTATTATTATTCA
1 TTTTATTTTATTATTATTCA
*
79478922 -TTTATTTTTTTATTATTGCAA
1 TTTTATTTTATTATTATT-C-A
* *
79478943 TTTTAGCTTTTCATGAGATTTATTTA
1 TTTTA--TTTT-AT--TA-TTATTCA
79478969 TTTTATTTTATTATTATT
1 TTTTATTTTATTATTATT
79478987 TGTTCATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
19 16 0.31
20 6 0.12
21 2 0.04
22 4 0.08
23 2 0.04
24 8 0.16
25 1 0.02
26 6 0.12
27 1 0.02
28 5 0.10
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTATTTTATTATTATTCA
Found at i:79479147 original size:11 final size:11
Alignment explanation
Indices: 79479133--79479157 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79479123 TTTTTATTAT
79479133 TTTATTATTTA
1 TTTATTATTTA
79479144 TTTATTATTTA
1 TTTATTATTTA
79479155 TTT
1 TTT
79479158 GACCTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:79479211 original size:3 final size:3
Alignment explanation
Indices: 79479203--79479263 Score: 70
Period size: 3 Copynumber: 20.3 Consensus size: 3
79479193 CTTATTACAC
* * *
79479203 ATT ATT ATT ATT ATT ATT ATT ATT ATT -TAT GTT AAT ATT ATA ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
*
79479248 ATT GTT ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
79479264 AATTGTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
2 1 0.02
3 47 0.96
4 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:79486693 original size:71 final size:71
Alignment explanation
Indices: 79486604--79486748 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
79486594 CTTGAATTGA
79486604 AACTAGTATTTGGCTTTTGAGTCAAAGCAGTCAAATGAAATTACTCAAATTCACCCTGTGGCACG
1 AACTAGTATTTGGCTTTTGAGTCAAAGCAGTCAAATGAAATTACTCAAATTCACCCTGTGGCACG
79486669 TCATAT
66 TCATAT
79486675 AACTAGTATTTGGCTTTTGAGTCAAAGCAGTCAAATGAAATTACTCAAATTCACCCTGTGGCACG
1 AACTAGTATTTGGCTTTTGAGTCAAAGCAGTCAAATGAAATTACTCAAATTCACCCTGTGGCACG
79486740 TCATAT
66 TCATAT
79486746 AAC
1 AAC
79486749 ATCCATGACT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (71 bp):
AACTAGTATTTGGCTTTTGAGTCAAAGCAGTCAAATGAAATTACTCAAATTCACCCTGTGGCACG
TCATAT
Found at i:79488438 original size:217 final size:209
Alignment explanation
Indices: 79487972--79488897 Score: 746
Period size: 217 Copynumber: 4.3 Consensus size: 209
79487962 ATGTGCAAAT
* * *
79487972 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTATGTTATAATATTATGTTGGTTGATTC
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTGGTTGAGTC
* *
79488037 TTTTGTTGCCAATAGTATGGTAGAATTCCTTCACGTTCTTGTTTGTTGTTCCTAAGTTGTTTTCT
66 TTTTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGTTGTTTTCT
* **
79488102 AGCATTTATATCCTATTTTCATGTTGAATGAAAATGACCAAAAGTTGATTTTAATGCTGGTTTTG
131 AGCATTTAGATCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTGATTTTAATGCTGGTTTTG
79488167 AGTTATATGCAATC
196 AGTTATATGCAATC
* * * * *
79488181 ATCAAAGCTTTTTGACTGAAGCTATGTAAGTTGAGGTTGTTTTATAATATTATGTTGATTGCTTG
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTA---TG-TTG---G
* * *
79488246 TTGAGGTCTTTTGGTGCCAATAGTATGGTAGCATACCTTTATGTTCTTGTTTGTTGTTCCTAAGT
59 TTGA-GTCTTTTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGT
* * *
79488311 TGTTTTTTAGCATTTGGATCCTATTTTCATGTTGAATGAGAACAACCAAAAGTTGATTTTAATGC
123 TGTTTTCTAGCATTTAGATCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTGATTTTAATGC
*
79488376 -GGTTTTTTAGTTATATGCAATC
188 TGG-TTTTGAGTTATATGCAATC
** *
79488398 ATCAAAGCTTTTTGGCTCAAGCTGTGGGACTTGTGGTTG-------------T-TT-GTTGAGAC
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTGGTTGAGTC
** * * * * *
79488448 ATTCTTGGTGTTAATAGTATGGTAGTACACCTTTATGTTCTTGTTTGTTGTTCCCAAGTTGGTTT
66 -TT-TTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGTT-GTTT
*
79488513 T-TTGCATTTCA-ATCCTATTTTCATGTTGAATGAAAACAACCAAAAG-TGTATCTCAACGACAT
128 TCTAGCATTT-AGATCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTG-AT-T--------T
* *
79488575 GACAAATTGCCATGGTTAGATGTGGTTTTCAAGTTTTATGCAATC
182 ---TAA-TG-C-TGGTT---T-T-G------AGTTATATGCAATC
* *
79488620 ATCAAAGCTTTTTTGGCTCAAGCTGTGTAACTTGAGGTTGTCTTATAATATTATGTTTGTTGTTT
1 ATCAAAGCT-TTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTA----TGTTG---
* * * * *
79488685 GTTGAGATCCTTTGGTGCCAATAGCATGGTAGCATACATGCCTTTATGTTCTTGTTTGTTGTTCC
58 GTTGAG-TCTTTTGGTGCCAATAGTATGGTAG---A-ATACCTTCACGTTCTTGTTTGTTGTTCC
* * * * *
79488750 TAAGTTGTTTTTTA-CAATTTTGATTCTATTTT-ATGTTCAATGAAAACGACCAAAAGTTTG-TT
118 TAAGTTGTTTTCTAGC-ATTTAGATCCTATTTTCATGTTGAATGAAAACAACCAAAAG-TTGATT
* *
79488812 TTAATG-TGGTTTTTAAGTTATAAGCAATC
181 TTAATGCTGG-TTTTGAGTTATATGCAATC
* *
79488841 CTCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTTTAATATTATGTTG
1 ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTG
79488898 ATTGCTAGTT
Statistics
Matches: 578, Mismatches: 64, Indels: 143
0.74 0.08 0.18
Matches are distributed among these distances:
194 2 0.00
195 9 0.02
196 94 0.16
197 6 0.01
199 2 0.00
201 1 0.00
205 1 0.00
208 2 0.00
209 47 0.08
210 1 0.00
211 2 0.00
212 4 0.01
213 3 0.01
214 1 0.00
215 1 0.00
216 12 0.02
217 163 0.28
220 40 0.07
221 20 0.03
222 22 0.04
223 27 0.05
228 1 0.00
229 1 0.00
231 3 0.01
232 2 0.00
234 2 0.00
235 2 0.00
238 1 0.00
240 1 0.00
241 2 0.00
244 18 0.03
245 7 0.01
246 2 0.00
247 29 0.05
248 45 0.08
249 2 0.00
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.44
Consensus pattern (209 bp):
ATCAAAGCTTTTTGGCTCAAGCTGTGTAACTTGTGGTTGTTTTATAATATTATGTTGGTTGAGTC
TTTTGGTGCCAATAGTATGGTAGAATACCTTCACGTTCTTGTTTGTTGTTCCTAAGTTGTTTTCT
AGCATTTAGATCCTATTTTCATGTTGAATGAAAACAACCAAAAGTTGATTTTAATGCTGGTTTTG
AGTTATATGCAATC
Found at i:79493571 original size:32 final size:32
Alignment explanation
Indices: 79493526--79493596 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
79493516 TAGCTATTGG
79493526 TAATTAAAATCAATGCT-TAATTAAGCCTTGATT
1 TAATT-AAATCAATGCTAT-ATTAAGCCTTGATT
*
79493559 TAATTAAATCAATGCTATATTAAGGCTTGATT
1 TAATTAAATCAATGCTATATTAAGCCTTGATT
*
79493591 CAATTA
1 TAATTA
79493597 TCTAATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 29 0.83
33 6 0.17
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.39
Consensus pattern (32 bp):
TAATTAAATCAATGCTATATTAAGCCTTGATT
Found at i:79496439 original size:15 final size:14
Alignment explanation
Indices: 79496411--79496444 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
79496401 TTATAAGATG
79496411 ATTTT-ATTAAATT
1 ATTTTAATTAAATT
79496424 ATTTTAATTGAAATT
1 ATTTTAATT-AAATT
79496439 ATTTTA
1 ATTTTA
79496445 GGATCTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 3 0.16
15 11 0.58
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (14 bp):
ATTTTAATTAAATT
Found at i:79498564 original size:11 final size:11
Alignment explanation
Indices: 79498550--79498605 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
79498540 AGATAAATAT
79498550 TATTTTATTAA
1 TATTTTATTAA
*
79498561 TATTTTAATAATA
1 TATTTT-ATTA-A
*
79498574 TATTTTATTAT
1 TATTTTATTAA
* *
79498585 TATTTTAGTAT
1 TATTTTATTAA
79498596 TATTTTATTA
1 TATTTTATTA
79498606 GTATATAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
11 25 0.66
12 6 0.16
13 7 0.18
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:79498577 original size:24 final size:24
Alignment explanation
Indices: 79498545--79498605 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
79498535 TAATTAGATA
79498545 AATATTATTTTATTAATATTTTAAT
1 AATA-TATTTTATTAATATTTTAAT
* *
79498570 AATATATTTTATTATTATTTTAGT
1 AATATATTTTATTAATATTTTAAT
79498594 -AT-TATTTTATTA
1 AATATATTTTATTA
79498606 GTATATAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 10 0.29
23 2 0.06
24 18 0.53
25 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTAAT
Found at i:79500791 original size:46 final size:46
Alignment explanation
Indices: 79500739--79501058 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
79500729 TGTGTGCTCT
**
79500739 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
79500785 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
79500831 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
79500877 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
79500923 ATGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
79500969 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
79501015 ATGACA-GAAAATGAGTAAGCCCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
79501059 TTATGTCAAA
Statistics
Matches: 262, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 1 0.00
46 261 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79503220 original size:17 final size:17
Alignment explanation
Indices: 79503200--79503262 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
79503190 TTTAAAAATT
79503200 ATATTTAATATAATAAA
1 ATATTTAATATAATAAA
* * * *
79503217 ATATTTATTATATTTAT
1 ATATTTAATATAATAAA
* * *
79503234 TTTTTTAATAAAATAAA
1 ATATTTAATATAATAAA
*
79503251 ATATTTATTATA
1 ATATTTAATATA
79503263 TTTATCGTAG
Statistics
Matches: 31, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATTTAATATAATAAA
Found at i:79503249 original size:34 final size:34
Alignment explanation
Indices: 79503203--79503267 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
79503193 AAAAATTATA
*
79503203 TTTAATATAATAAAATATTTATTATATTTATTTT
1 TTTAATAAAATAAAATATTTATTATATTTATTTT
79503237 TTTAATAAAATAAAATATTTATTATATTTAT
1 TTTAATAAAATAAAATATTTATTATATTTAT
79503268 CGTAGTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (34 bp):
TTTAATAAAATAAAATATTTATTATATTTATTTT
Found at i:79503384 original size:12 final size:13
Alignment explanation
Indices: 79503357--79503382 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79503347 TTAGTGTACT
79503357 ATATATTTTTAAA
1 ATATATTTTTAAA
79503370 ATATATTTTTAAA
1 ATATATTTTTAAA
79503383 TAAAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATATTTTTAAA
Found at i:79504500 original size:9 final size:9
Alignment explanation
Indices: 79504486--79504546 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
79504476 TTTGGTTAAA
*
79504486 AATTACCCT
1 AATTACCCG
79504495 AATTACCCG
1 AATTACCCG
79504504 AATTACCCG
1 AATTACCCG
79504513 AATTACCCG
1 AATTACCCG
*
79504522 AATTAACCG
1 AATTACCCG
*
79504531 AATTAACCG
1 AATTACCCG
79504540 AATTACC
1 AATTACC
79504547 GAAAAATACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.38, C:0.30, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:79505665 original size:22 final size:23
Alignment explanation
Indices: 79505635--79505677 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
79505625 TTATTTTGAT
*
79505635 TTATTTATACATT-TTAATTTTA
1 TTATGTATACATTATTAATTTTA
*
79505657 TTATGTATACTTTATTAATTT
1 TTATGTATACATTATTAATTT
79505678 CAAACCATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (23 bp):
TTATGTATACATTATTAATTTTA
Found at i:79509180 original size:18 final size:18
Alignment explanation
Indices: 79509147--79509193 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
79509137 GTCTAAAAAA
*
79509147 ATTATATATA-TT-TTTT
1 ATTATCTATATTTATTTT
* *
79509163 ATTTTTTATATTTATTTT
1 ATTATCTATATTTATTTT
79509181 ATTATCTATATTT
1 ATTATCTATATTT
79509194 GAGATTCACG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 8 0.32
17 2 0.08
18 15 0.60
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTATCTATATTTATTTT
Found at i:79521209 original size:18 final size:18
Alignment explanation
Indices: 79521170--79521203 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
79521160 CGGTTGAATC
*
79521170 AATTTTATAATTTTTATG
1 AATTTTATAATATTTATG
79521188 AATTTT-TAATATTTAT
1 AATTTTATAATATTTAT
79521204 TTAATTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
AATTTTATAATATTTATG
Found at i:79530556 original size:15 final size:15
Alignment explanation
Indices: 79530536--79530573 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
79530526 AAATTCAAAC
79530536 TTGACTTAACTCGAT
1 TTGACTTAACTCGAT
79530551 TTGACTTAACTCGAT
1 TTGACTTAACTCGAT
79530566 TTGA-TTAA
1 TTGACTTAA
79530574 GTCAATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (15 bp):
TTGACTTAACTCGAT
Found at i:79534489 original size:22 final size:22
Alignment explanation
Indices: 79534458--79534523 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
79534448 ATCCTTAAAC
*
79534458 TATATTTTATAGGTACAATAGAG
1 TATA-TTTATAGGTACAATACAG
* *
79534481 TGTATTTATACGTACAATACAG
1 TATATTTATAGGTACAATACAG
79534503 TATATTTATAGGTACAATACA
1 TATATTTATAGGTACAATACA
79534524 AATATATATT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
22 35 0.92
23 3 0.08
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (22 bp):
TATATTTATAGGTACAATACAG
Found at i:79535546 original size:29 final size:30
Alignment explanation
Indices: 79535503--79535582 Score: 108
Period size: 29 Copynumber: 2.6 Consensus size: 30
79535493 GAATCAAATC
*
79535503 AAATCAAAATTTCATGTATAAAATTATACA-
1 AAATCAAAA-TTCATATATAAAATTATACAT
*
79535533 AAATCAAAATTCATATATAACATTATACATT
1 AAATCAAAATTCATATATAAAATTATACA-T
*
79535564 AAATCAAATTTCATATATA
1 AAATCAAAATTCATATATA
79535583 GTTTTAATGT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 18 0.40
30 9 0.20
31 18 0.40
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (30 bp):
AAATCAAAATTCATATATAAAATTATACAT
Found at i:79536625 original size:32 final size:31
Alignment explanation
Indices: 79536589--79536660 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
79536579 AAATTAATGT
* *
79536589 ATGATAAAATTGTAT-TTTGTCTCCTTTCAAAA
1 ATGATAAAATT-TATGTTTAT-TCCCTTCAAAA
79536621 ATGATAAAA-TTATGTTTATTCCCTTCAAAA
1 ATGATAAAATTTATGTTTATTCCCTTCAAAA
*
79536651 ATGATGAAAT
1 ATGATAAAAT
79536661 AATAATTAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 21 0.60
31 5 0.14
32 9 0.26
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (31 bp):
ATGATAAAATTTATGTTTATTCCCTTCAAAA
Found at i:79540465 original size:5 final size:5
Alignment explanation
Indices: 79540439--79540496 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
79540429 ATGTGTTAAA
* * *
79540439 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT AAATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
79540488 ATATT ATAT
1 ATATT ATAT
79540497 AAATAAGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
5 30 0.70
6 10 0.23
7 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (5 bp):
ATATT
Found at i:79540487 original size:12 final size:12
Alignment explanation
Indices: 79540437--79540497 Score: 61
Period size: 12 Copynumber: 4.8 Consensus size: 12
79540427 TTATGTGTTA
79540437 AAATATATATATT
1 AAAT-TATATATT
79540450 AAATTAT-TATT
1 AAATTATATATT
*
79540461 ATATTATAGTATATT
1 A-AAT-TA-TATATT
79540476 AAATTATATATT
1 AAATTATATATT
*
79540488 ATATTATATA
1 AAATTATATA
79540498 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
11 5 0.12
12 20 0.49
13 8 0.20
14 3 0.07
15 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
AAATTATATATT
Found at i:79540495 original size:27 final size:25
Alignment explanation
Indices: 79540440--79540497 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 25
79540430 TGTGTTAAAA
79540440 TATATATATTAAATTATTATTATAT
1 TATATATATTAAATTATTATTATAT
79540465 TATAGTATATTAAATTATATATTATAT
1 TATA-TATATTAAATTAT-TATTATAT
79540492 TATATA
1 TATATA
79540498 AATAAGTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 4 0.13
26 15 0.48
27 12 0.39
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
TATATATATTAAATTATTATTATAT
Found at i:79541839 original size:18 final size:19
Alignment explanation
Indices: 79541818--79541856 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
79541808 ATATATAAAT
79541818 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
79541836 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
79541855 AT
1 AT
79541857 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:79573041 original size:18 final size:18
Alignment explanation
Indices: 79573014--79573088 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
79573004 TACGACCGTT
*
79573014 TACGGTACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
79573032 AACGGCACTATTCATGTA
1 TACGGCACTATTCACGTA
79573050 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
* *
79573068 TACGGTACTGTTCACGTA
1 TACGGCACTATTCACGTA
79573086 TAC
1 TAC
79573089 AGTAGTTGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (18 bp):
TACGGCACTATTCACGTA
Found at i:79587050 original size:46 final size:47
Alignment explanation
Indices: 79586984--79587153 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 47
79586974 GGCATCCGAA
79586984 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGA-
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGAG
* * *
79587030 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC-GAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCGGAG
* *
79587077 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGAG
*
79587123 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79587154 GCGGGTTACT
Statistics
Matches: 105, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.55
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGAG
Found at i:79587133 original size:93 final size:93
Alignment explanation
Indices: 79586974--79587146 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
79586964 GGGATATTTG
* *
79586974 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGACTCGTTGAG
79587039 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
79587067 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC-GAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGA-CTCGTTGA
79587131 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
79587147 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:79593845 original size:18 final size:20
Alignment explanation
Indices: 79593809--79593851 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
79593799 ATATTTTATG
79593809 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATTAGATATAT
79593828 ATTATTTTAA-TA-ATATAT
1 ATTATTTTAATTAGATATAT
*
79593846 TTTATT
1 ATTATT
79593852 ATTATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 6 0.27
20 5 0.23
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
ATTATTTTAATTAGATATAT
Found at i:79593863 original size:11 final size:11
Alignment explanation
Indices: 79593843--79593877 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
79593833 TTTAATAATA
*
79593843 TATTTTATTAT
1 TATTTCATTAT
79593854 TATTTCATTAT
1 TATTTCATTAT
*
79593865 TATTTCTTTAT
1 TATTTCATTAT
79593876 TA
1 TA
79593878 ATTATTTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (11 bp):
TATTTCATTAT
Found at i:79596125 original size:30 final size:30
Alignment explanation
Indices: 79596058--79596125 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
79596048 GTTGAAAGAT
*
79596058 ACCATGGCAACCTGATATGAAAAGTGTAAG
1 ACCATGGTAACCTGATATGAAAAGTGTAAG
79596088 ACCATGGTAACCTGATATGAAAAGTGTAAG
1 ACCATGGTAACCTGATATGAAAAGTGTAAG
79596118 ACCATGGT
1 ACCATGGT
79596126 TGAAAGATAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (30 bp):
ACCATGGTAACCTGATATGAAAAGTGTAAG
Found at i:79596129 original size:21 final size:21
Alignment explanation
Indices: 79596105--79596165 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
79596095 TAACCTGATA
79596105 TGAAAAGTGTAAGACCATGGT
1 TGAAAAGTGTAAGACCATGGT
* *
79596126 TG-AAA--G--ATACCAT--A
1 TGAAAAGTGTAAGACCATGGT
79596140 TGAAAAGTGTAAGACCATGGT
1 TGAAAAGTGTAAGACCATGGT
79596161 TGAAA
1 TGAAA
79596166 GATACCATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
14 2 0.07
15 3 0.10
16 6 0.21
17 1 0.03
18 1 0.03
19 6 0.21
20 3 0.10
21 7 0.24
ACGTcount: A:0.43, C:0.10, G:0.25, T:0.23
Consensus pattern (21 bp):
TGAAAAGTGTAAGACCATGGT
Found at i:79596138 original size:46 final size:46
Alignment explanation
Indices: 79596088--79596302 Score: 229
Period size: 46 Copynumber: 4.9 Consensus size: 46
79596078 AAAGTGTAAG
*
79596088 ACCATGGTAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAG--
1 ACCATGGCAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGAT
79596132 ---AT----ACC--ATATGAAAAGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGCAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGAT
*
79596169 ACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGCAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGAT
* * ***
79596215 ACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
1 ACCATGGCAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGAT
* ** * *
79596261 ACCATGGCAACATGA-CGGAAAATGAGTAAGACCATAGTTGAA
1 ACCATGGCAACCTGATATGAAAA-GTGTAAGACCATGGTTGAA
79596303 GGCACTATGG
Statistics
Matches: 147, Mismatches: 12, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
35 30 0.20
37 3 0.02
40 2 0.01
41 2 0.01
44 3 0.02
45 4 0.03
46 103 0.70
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ACCATGGCAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGAT
Found at i:79596148 original size:35 final size:35
Alignment explanation
Indices: 79596102--79596173 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
79596092 TGGTAACCTG
79596102 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
79596137 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
1 ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
79596172 AT
1 AT
79596174 GGCAACCTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (35 bp):
ATATGAAAAGTGTAAGACCATGGTTGAAAGATACC
Found at i:79597630 original size:5 final size:5
Alignment explanation
Indices: 79597620--79597647 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
79597610 CAATTTGTGA
79597620 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
79597648 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:79604997 original size:29 final size:29
Alignment explanation
Indices: 79604955--79605011 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
79604945 TATCTCAAAC
*
79604955 CTAGAAAGTTTTTGAAGAACAAAGGCAAT
1 CTAGAAAATTTTTGAAGAACAAAGGCAAT
79604984 CTAGAAAATTTTTGAAGAACAAAGGCAA
1 CTAGAAAATTTTTGAAGAACAAAGGCAA
79605012 AGATTTTCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (29 bp):
CTAGAAAATTTTTGAAGAACAAAGGCAAT
Found at i:79605025 original size:21 final size:21
Alignment explanation
Indices: 79605000--79605039 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
79604990 AATTTTTGAA
79605000 GAACAAAGGCAAAGATTTTCT
1 GAACAAAGGCAAAGATTTTCT
* *
79605021 GAACAAAGGCTAAGTTTTT
1 GAACAAAGGCAAAGATTTT
79605040 ATAACTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (21 bp):
GAACAAAGGCAAAGATTTTCT
Found at i:79617608 original size:130 final size:129
Alignment explanation
Indices: 79617443--79617930 Score: 614
Period size: 130 Copynumber: 3.8 Consensus size: 129
79617433 AAATTCTTCA
* *
79617443 AAACGAAGACGAAATTTGATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * *
79617508 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCATTTCTTTTAAAACCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCA-TTCTTTTAAAATCCCTT
*
79617573 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* *
79617638 TTCGCATTTGCTCAAAATAATCAAATTTTCCTTCGAAATTCCATTCA------TAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCATTCTTTTAAAATCCCTT
* *
79617696 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * ** * *
79617761 TTCGCATTTGCTCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTGTCTTTTAAAATCCCTA
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCAT-TCTTTTAAAATCCCTT
* * * * * * * * *
79617826 AAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGTTGGGTAGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * *
79617891 TCCTCG-A-TTGTTTAAAATAATCAAATATCCCTTCAAAATT
66 T--TCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATT
79617931 TCACTCGGCT
Statistics
Matches: 315, Mismatches: 34, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
123 112 0.36
130 199 0.63
131 1 0.00
132 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (129 bp):
AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCCATTCATTCTTTTAAAATCCCTT
Found at i:79617910 original size:253 final size:253
Alignment explanation
Indices: 79617443--79617930 Score: 665
Period size: 253 Copynumber: 1.9 Consensus size: 253
79617433 AAATTCTTCA
*
79617443 AAACGAAGACGAAATTTGATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTGATGTTCGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAAT
* * * * * *
79617508 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCATTTCTTTTAAAACCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCCACTCATGTCTTTTAAAACCCCTA
* * * *
79617573 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
131 AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
* * *
79617638 TTCGCATTTGCTCAAAATAATCAAATTTTCCTTCGAAATTCCATTCATAAAATCCCTT
196 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
* * *
79617696 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTGATGTTCGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAAT
* * * * * *
79617761 TTCGCATTTGCTCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTGTCTTTTAAAATCCCTA
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCCACTCATGTCTTTTAAAACCCCTA
* * * * * *
79617826 AAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGTTGGGTAGCAAT
131 AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
* *
79617891 TCCTCG-A-TTGTTTAAAATAATCAAATATCCCTTCAAAATT
196 T--TCGCATTTGCTCAAAATAATCAAATATCCCTTCAAAATT
79617931 TCACTCGGCT
Statistics
Matches: 202, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
253 198 0.98
254 1 0.00
255 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (253 bp):
AAACGAAGACGAAATTTGATGTTCGGCAATTCGCGGAATCGTACCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCCACTCATGTCTTTTAAAACCCCTA
AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
Found at i:79617949 original size:130 final size:130
Alignment explanation
Indices: 79617685--79617963 Score: 303
Period size: 130 Copynumber: 2.1 Consensus size: 130
79617675 ATTCCATTCA
* * * *
79617685 TAAAATCCCTTAAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTACCCTAACGTGT
1 TAAAATCCCTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGT
* * ** * *
79617750 TGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTGTCTTT
66 TGGGTAGCAATTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCGTGTCTTC
* * * * * * *
79617815 TAAAATCCCTAAAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGT
1 TAAAATCCCTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGT
* * *
79617880 TGGGTAGCAATTCCTCG-A-TTGTTTAAAATAATCAAATATCCCTTCAAAATTTCACTCG-GCTC
66 TGGGTAGCAATT--TCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCGTG-TC
79617942 TTC
128 TTC
*
79617945 TAAAAATCCTTTAAAACGA
1 T-AAAATCC-CTAAAACGA
79617964 GGGCAATGCT
Statistics
Matches: 123, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
129 1 0.01
130 103 0.84
131 8 0.07
132 11 0.09
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (130 bp):
TAAAATCCCTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTACCCTAACGTGT
TGGGTAGCAATTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCGTGTCTTC
Found at i:79619770 original size:14 final size:14
Alignment explanation
Indices: 79619751--79619820 Score: 75
Period size: 14 Copynumber: 5.6 Consensus size: 14
79619741 TTCATTTACA
79619751 TTGCATTGCATCAT
1 TTGCATTGCATCAT
79619765 TTGCATTGCATCAT
1 TTGCATTGCATCAT
79619779 TTGCA-T-CAT--T
1 TTGCATTGCATCAT
*
79619789 TTGTATTG---CA-
1 TTGCATTGCATCAT
79619799 TTGCATTGCATCAT
1 TTGCATTGCATCAT
79619813 TTGCATTG
1 TTGCATTG
79619821 AATTTCCCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
10 12 0.26
11 1 0.02
12 3 0.07
13 3 0.07
14 27 0.59
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.46
Consensus pattern (14 bp):
TTGCATTGCATCAT
Found at i:79622395 original size:15 final size:15
Alignment explanation
Indices: 79622354--79622409 Score: 60
Period size: 17 Copynumber: 3.6 Consensus size: 15
79622344 GAGATATTCA
*
79622354 AAAAAAAAGAGAAAG
1 AAAAAAAAGAAAAAG
79622369 AAATAAATAAGAAAAAG
1 AAA-AAA-AAGAAAAAG
*
79622386 AAAAAGAAG-AAAAG
1 AAAAAAAAGAAAAAG
79622400 AAAATAAAAG
1 AAAA-AAAAG
79622410 GAGAGGCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 9 0.26
15 10 0.29
16 5 0.14
17 11 0.31
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:79623837 original size:45 final size:44
Alignment explanation
Indices: 79623641--79623840 Score: 136
Period size: 45 Copynumber: 4.5 Consensus size: 44
79623631 ATCTCGTTTC
* *
79623641 CCTGAAGTTGCAGTGAAGTAGATCGAAAACGGTGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGTAGATCGAAAACTGCGAATCT-AGCTT
** * ** * * *
79623686 CCTGAAGTTGCAGTGAAGTAGAT-TTAAGCCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGTAGATCGAAAACTGCGAATCTAGCTT
* * * * * * * * *
79623729 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTC-AGATCTCGTTT
1 CCTGAAGTTGCAGTGAAGTAGATCGAAAACTGCGA-ATCTAGCTT
* * *
79623772 CCCTGAAATTGCAGTGAAGCAGATCGAAGACTGCGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGTAGATCGAAAACTGCGAATCT-AGCTT
*
79623818 CCTGAAGTTGCAGTGAAGCAGAT
1 CCTGAAGTTGCAGTGAAGTAGAT
79623841 TTAAGCCACC
Statistics
Matches: 114, Mismatches: 35, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
42 1 0.01
43 31 0.27
44 23 0.20
45 55 0.48
46 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGAAGTAGATCGAAAACTGCGAATCTAGCTT
Found at i:79623853 original size:132 final size:132
Alignment explanation
Indices: 79623616--79623927 Score: 552
Period size: 132 Copynumber: 2.4 Consensus size: 132
79623606 TGGGCCTATG
* * *
79623616 AGGCTAAAATATCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGTAGATCGAAAACGGTGAATCTG
1 AGGCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATCTG
*
79623681 AGCTTCCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
79623746 GT
131 GT
* * *
79623748 AGGCTAAAATTTCAGATCTCGTTTCCCTGAAATTGCAGTGAAGCAGATCGAAGACTGCGAATCTG
1 AGGCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATCTG
79623813 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
79623878 GT
131 GT
*
79623880 AGGCTAAAATTTCAGATCTCGTTTCCCTTAAGTTGCAGTGAAGCAGAT
1 AGGCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGAT
79623928 TTAAGCCACC
Statistics
Matches: 171, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 171 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (132 bp):
AGGCTAAAATTTCAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAAACGGCGAATCTG
AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGA
GT
Found at i:79623968 original size:87 final size:88
Alignment explanation
Indices: 79623822--79624015 Score: 345
Period size: 87 Copynumber: 2.2 Consensus size: 88
79623812 GAGCTTCCTG
79623822 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
*
79623887 AATTTC-AGATCTCGTTTCCCTT
66 AATTTCAAGATCTCGTTTCCCTA
*
79623909 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGGCTAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
*
79623974 AATTTCAAGATCTTGTTTCCCTA
66 AATTTCAAGATCTCGTTTCCCTA
*
79623997 AAGTTGCAGTGAAACAGAT
1 AAGTTGCAGTGAAGCAGAT
79624016 CGAAGACGGC
Statistics
Matches: 102, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
87 70 0.69
88 32 0.31
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (88 bp):
AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAA
AATTTCAAGATCTCGTTTCCCTA
Found at i:79624079 original size:220 final size:220
Alignment explanation
Indices: 79623686--79624148 Score: 770
Period size: 220 Copynumber: 2.1 Consensus size: 220
79623676 ATCTGAGCTT
*
79623686 CCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
* *
79623751 CTAAAATTTCAGATCTCGTTTCCCTGAAATTGCAGTGAAGCAGATCGAAGACTGCGAATCTGAGC
66 CTAAAATTTCAGATCTCGTTTCCCTGAAATTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGC
* *
79623816 TTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
131 TTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
79623881 GGCT-AAAATT-TCAGATCTCGTTTC
196 GGCTGAAAATTAT-AGATCTCGTTTC
* *
79623905 CCTTAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
79623970 CTAAAATTTCAAGATCTTGTTTCCCT-AAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCTGA
66 CTAAAATTTC-AGATCTCGTTTCCCTGAAA-TTGCAGTGAAACAGATCGAAGACGGCGAATCTGA
* * *
79624034 GCTTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACTATCCTAGCTCCCTAAGGTTGTAGTGGAG
129 GCTTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAG
*
79624099 TAGGCTGAAGATTATAGATCTCGTTTC
194 TAGGCTGAAAATTATAGATCTCGTTTC
79624126 CCTGAAGTTGCAGTGAAGCAGAT
1 CCTGAAGTTGCAGTGAAGCAGAT
79624149 CGAAGACGGC
Statistics
Matches: 227, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
219 75 0.33
220 112 0.49
221 39 0.17
222 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (220 bp):
CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
CTAAAATTTCAGATCTCGTTTCCCTGAAATTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGC
TTCCTAAAGTTGCAGTGAAGCAGACTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTA
GGCTGAAAATTATAGATCTCGTTTC
Found at i:79624148 original size:133 final size:131
Alignment explanation
Indices: 79623909--79625036 Score: 1242
Period size: 133 Copynumber: 8.6 Consensus size: 131
79623899 CGTTTCCCTT
* *
79623909 AAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGGCT-A
1 AAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * *
79623973 AAATTTCAAGATCTTGTTTCCCTAAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCTT
65 AGATTT--AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
*
79624038 CCTA
128 CCTG
* *
79624042 AAGTTGCAGTGAAGCAGACTTAAGCCACTATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGA
1 AAGTTGCAGTGAAGCAGATTTAAGCCAC-ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
*
79624107 AGATTATAGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTTC
65 AGATT-TAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTTC
79624172 CTG
129 CTG
* *
79624175 AAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-A
1 AAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* *
79624239 AAATTTCAAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTGAGCTT
65 AGATTT--AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
79624304 CCTG
128 CCTG
* *
79624308 AAGTTGCAGTGAAGCAAATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-A
1 AAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * * * *
79624372 AAATTTCAAGATCTTGTTTCCCTAAAGTTACAGTGAAACAGATCGAAGATGGCGAATCTGAGCTT
65 AGATTT--AGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
79624437 CCTG
128 CCTG
* * * *
79624441 AAGATGCAGCGAAGCAGATTTAAG---CATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGGA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
**
79624503 GATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGACGGCGAATCT-AGGCTT
66 GATT-TAGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATCTGA-GCTT
79624566 CCTG
128 CCTG
* *
79624570 ATGTTGCA--GAAGCAGATTTAAG-CA-AGTCCTA-CTTCTCTAAAGTTGTAGTGGAGTAGGCTG
1 AAGTTGCAGTGAAGCAGATTTAAGCCACA-TCCTAGC-TCCCTAAAGTTGTAGTGGAGTAGGCTG
* * ** * * * * ***
79624630 AGGATTGTAGATCTCGCCTCCCTGAAGTTACAGTGAGGCAAATCAAAGACGATAAATCTTG-GCT
64 AAGATT-TAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-TGAGCT
79624694 TCCTG
127 TCCTG
* ** * *
79624699 AAGATGCAACGAAGCAGATTTGAG---CATCCTAGCTCCCTAAGGTTGTAGTGGAGTAGGCTGAA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
**
79624761 GATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAGACGGCGAATCT-AGGCTT
66 GATT-TAGATCTTGTTTCCCTGAAG-TTGCAGTGAAGCAGATCGAAGACGGCGAATCTGA-GCTT
79624824 CCTG
128 CCTG
* * * * *
79624828 ATGTTGCAGTAAAGCAGATTTATG-CA-AGTTCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGA
1 AAGTTGCAGTGAAGCAGATTTAAGCCACA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
* * * * * * ***
79624891 GGATTGTAGATCTCGTCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTG-GCTT
65 AGATT-TAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATC-TGAGCTT
79624955 CCTG
128 CCTG
* * * * * *
79624959 AAGATGCTGTGAAGCAGATTTAAG-CA-AGTCCTAGCTCCCTAAAGTAGGTGGTGAAGTAAGCTG
1 AAGTTGCAGTGAAGCAGATTTAAGCCACA-TCCTAGCTCCCTAAAGT-TGTAGTGGAGTAGGCTG
*
79625022 AAGATTGTAGGTCTT
64 AAGATT-TAGATCTT
79625037 ATCTTCTCGA
Statistics
Matches: 860, Mismatches: 104, Indels: 63
0.84 0.10 0.06
Matches are distributed among these distances:
127 14 0.02
128 8 0.01
129 273 0.32
130 10 0.01
131 137 0.16
132 34 0.04
133 377 0.44
134 6 0.01
135 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (131 bp):
AAGTTGCAGTGAAGCAGATTTAAGCCACATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
GATTTAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTTCCT
G
Found at i:79624177 original size:45 final size:44
Alignment explanation
Indices: 79624126--79624323 Score: 166
Period size: 45 Copynumber: 4.5 Consensus size: 44
79624116 ATCTCGTTTC
*
79624126 CCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTGAGCTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
* * ** * * *
79624171 CCTGAAGTTGCAGTGAAGTAGATTTAAG-CCACCAACCTAGCTC
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
* * * * * * *** * * *
79624214 CCTAAAGTTGTAGTGGAGTAG-GCTAAAATTTCAAGATCTTGTTT
1 CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGA-ATCTAGCTT
79624258 CCCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTGAGCTT
1 -CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCT-AGCTT
79624304 CCTGAAGTTGCAGTGAAGCA
1 CCTGAAGTTGCAGTGAAGCA
79624324 AATTTAAGCC
Statistics
Matches: 114, Mismatches: 34, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
42 3 0.03
43 24 0.21
44 11 0.10
45 66 0.58
46 10 0.09
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGAAGCAGATCTAAGACGGCGAATCTAGCTT
Found at i:79624275 original size:88 final size:88
Alignment explanation
Indices: 79623818--79624286 Score: 351
Period size: 88 Copynumber: 5.3 Consensus size: 88
79623808 ATCTGAGCTT
79623818 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
79623883 CTAAAATTTC-AGATCTCGTTTC
66 CTAAAATTTCAAGATCTAGTTTC
* *
79623905 CCTTAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTTTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
79623970 CTAAAATTTCAAGATCTTGTTTC
66 CTAAAATTTCAAGATCTAGTTTC
* * ** ** * * * * * *
79623993 CCTAAAGTTGCAGTGAAACAGATCGAAGACGGCGAATCTGAGCTTCCTAAAGTTGCAGTGAAGCA
1 CCTGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAACCT-AGCTCCCTAAAGTTGTAGTGGAGTA
* * ** ** *
79624058 GACT-TAA-GCCACTATCCTAG-CTC
64 GGCTAAAATTTCAAGAT-CTAGTTTC
* * * ** * ** * * * * * * *
79624081 CCT-AAGGTTGTAGTGGAGTAGGCTGAAGATTA-TAGATCTCGTTTCCCTGAAGTTGCAGTGAAG
1 CCTGAA-GTTGCAGTGAAGCAGATTTAAG-CCACCA-ACCTAG-CTCCCTAAAGTTGTAGTGGAG
* * * * *** * *
79624144 CAGATCGAAGACGGCGA-ATCTGAGCTT-
62 TAG-GCTAAAATTTCAAGATCT-AGTTTC
*
79624171 CCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
79624236 CTAAAATTTCAAGATCTTGTTTC
66 CTAAAATTTCAAGATCTAGTTTC
*
79624259 CCTGAAGTTGCAGTGAAGCAGATCTAAG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAG
79624287 ACGGCGAATC
Statistics
Matches: 293, Mismatches: 73, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
87 86 0.29
88 134 0.46
89 19 0.06
90 49 0.17
91 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (88 bp):
CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
CTAAAATTTCAAGATCTAGTTTC
Found at i:79625289 original size:44 final size:44
Alignment explanation
Indices: 79625219--79626031 Score: 1223
Period size: 44 Copynumber: 18.5 Consensus size: 44
79625209 GACCAGACAT
* * * * *
79625219 ATTTGGCGTCTTTGTAGTAGCGGAGAGCAAATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
79625263 ATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
79625307 ATTTGGCGTCTCTGTGTTGGCGGAGAGTAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
79625351 ATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
79625395 ATTTGGCGTTTCTGTATTGGCGGAGAGCAGATCGAGGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
79625439 ATTTGGCGTCTCTGTGTTGGCGGAGAGTAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
79625483 ATTTGGCGTCTCTGTATTAGCGGAGAACAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
79625527 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
79625571 ATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
79625615 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
79625659 ATTTGGCATCTCTGTATTGGCGGAGAACAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* *
79625703 ATTTGGCGTCTCTATATTGGCGGAGAGCAGATCGATGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
79625747 ATTTGGCGTCTCTGTCTTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
79625791 ATTTGGCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
79625835 ATTTGGCGTCTCTGTGTTGGCAGAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* * *
79625879 ATTTGACGTCTCTGTATTGGCGGAGAGTAGATCGAGGATAGCAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
* ** *
79625923 ATTTGGCGTCTCTGTGTTGGTAGAGAGCAGATCGAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
*
79625967 ATTTGGCGTTTCTGTATTGGCGGAGAGCAGATCGAAGAT-GACAG
1 ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG-CAG
* * *
79626011 ATTTGGTGTATCTATATTGGC
1 ATTTGGCGTCTCTGTATTGGC
79626032 AAAGAGAAGA
Statistics
Matches: 698, Mismatches: 70, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
43 1 0.00
44 697 1.00
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAGCAG
Found at i:79627308 original size:250 final size:250
Alignment explanation
Indices: 79626867--79627366 Score: 1000
Period size: 250 Copynumber: 2.0 Consensus size: 250
79626857 GTCGTTCCCC
79626867 CTTCACTTCGTCGAAATCAAAGTTTGAATGGGGGTTTCAAAGACGAAAACCCCTCCTTTAGGGCT
1 CTTCACTTCGTCGAAATCAAAGTTTGAATGGGGGTTTCAAAGACGAAAACCCCTCCTTTAGGGCT
79626932 CGAACGCGCAGACCGACGCTCATGGTGGCGCATTAGTGCTGAGAGGAGCACTTGGGGGTCGATTA
66 CGAACGCGCAGACCGACGCTCATGGTGGCGCATTAGTGCTGAGAGGAGCACTTGGGGGTCGATTA
79626997 AGCAATGAAAGAGGGGAAGGGGCTAGGGTTCGGCTGAGTGACCCAGTTTTTAGCCTTTTTAAAGG
131 AGCAATGAAAGAGGGGAAGGGGCTAGGGTTCGGCTGAGTGACCCAGTTTTTAGCCTTTTTAAAGG
79627062 GCCAAATGCAACGCCGTTTCAAGCACAGTTCAATGGCTCAAAAACGACGTCGTTT
196 GCCAAATGCAACGCCGTTTCAAGCACAGTTCAATGGCTCAAAAACGACGTCGTTT
79627117 CTTCACTTCGTCGAAATCAAAGTTTGAATGGGGGTTTCAAAGACGAAAACCCCTCCTTTAGGGCT
1 CTTCACTTCGTCGAAATCAAAGTTTGAATGGGGGTTTCAAAGACGAAAACCCCTCCTTTAGGGCT
79627182 CGAACGCGCAGACCGACGCTCATGGTGGCGCATTAGTGCTGAGAGGAGCACTTGGGGGTCGATTA
66 CGAACGCGCAGACCGACGCTCATGGTGGCGCATTAGTGCTGAGAGGAGCACTTGGGGGTCGATTA
79627247 AGCAATGAAAGAGGGGAAGGGGCTAGGGTTCGGCTGAGTGACCCAGTTTTTAGCCTTTTTAAAGG
131 AGCAATGAAAGAGGGGAAGGGGCTAGGGTTCGGCTGAGTGACCCAGTTTTTAGCCTTTTTAAAGG
79627312 GCCAAATGCAACGCCGTTTCAAGCACAGTTCAATGGCTCAAAAACGACGTCGTTT
196 GCCAAATGCAACGCCGTTTCAAGCACAGTTCAATGGCTCAAAAACGACGTCGTTT
79627367 GGTGGAGCCC
Statistics
Matches: 250, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
250 250 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (250 bp):
CTTCACTTCGTCGAAATCAAAGTTTGAATGGGGGTTTCAAAGACGAAAACCCCTCCTTTAGGGCT
CGAACGCGCAGACCGACGCTCATGGTGGCGCATTAGTGCTGAGAGGAGCACTTGGGGGTCGATTA
AGCAATGAAAGAGGGGAAGGGGCTAGGGTTCGGCTGAGTGACCCAGTTTTTAGCCTTTTTAAAGG
GCCAAATGCAACGCCGTTTCAAGCACAGTTCAATGGCTCAAAAACGACGTCGTTT
Found at i:79628737 original size:130 final size:127
Alignment explanation
Indices: 79628570--79629057 Score: 601
Period size: 130 Copynumber: 3.8 Consensus size: 127
79628560 AAATTCTTCA
* * *
79628570 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* *
79628635 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCTATTCATTTCTTTCAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTC--TTCATTTCTTT-AAAATCCCTT
*
79628700 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* *
79628765 TTCGCATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTC--CA-TTC-ATAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCTTCATTTCTTTAAAATCCCTT
*
79628823 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * * * *
79628888 TTCGCATTTGCTCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTGTCTTTTAAAATCCCTA
66 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAA-TTC-TTCATTTC-TTTAAAATCCCTT
* * * * * * * * *
79628953 AAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGTTGGGTAGCAAT
1 AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * *
79629018 TCCTCG-A-TTGTTTAAAATAATCAAATATCTCTTCAAAATT
66 T--TCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATT
79629058 TCACTCGGCT
Statistics
Matches: 319, Mismatches: 30, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
123 109 0.34
124 4 0.01
125 3 0.01
126 2 0.01
127 1 0.00
128 2 0.01
129 2 0.01
130 192 0.60
131 1 0.00
132 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (127 bp):
AAACGAAGACGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCCCTTCGAAATTCTTCATTTCTTTAAAATCCCTT
Found at i:79629037 original size:253 final size:253
Alignment explanation
Indices: 79628570--79629057 Score: 658
Period size: 253 Copynumber: 1.9 Consensus size: 253
79628560 AAATTCTTCA
79628570 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * * *
79628635 TTCGTATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCTATTCATTTCTTTCAAAATCCCTT
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCTACTCATGTCTTTCAAAATCCCTA
* * * *
79628700 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
131 AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
* *
79628765 TTCGCATTTGCTCAAAATAATCAAATTTCCCTTCGAAATTCCATTCATAAAATCCCTT
196 TTCGCATTTGCTCAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
* * * *
79628823 AAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
1 AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
* * * * *
79628888 TTCGCATTTGCTCAAAATAATCGAATATCACTTTGAAATT-TCGCTCGTGTCTTTTAAAATCCCT
66 TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCT-ACTCATGTCTTTCAAAATCCCT
* * * * * *
79628952 AAAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGTTGGGTAGCAA
130 AAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAA
* * *
79629017 TTCCTCG-A-TTGTTTAAAATAATCAAATATCTCTTCAAAATT
195 TT--TCGCATTTGCTCAAAATAATCAAATATCCCTTCAAAATT
79629058 TCACTCGGCT
Statistics
Matches: 202, Mismatches: 30, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
252 1 0.00
253 197 0.98
254 1 0.00
255 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (253 bp):
AAACGAAGACGAAATTTAATGTTCGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCACTTCGAAATTCTACTCATGTCTTTCAAAATCCCTA
AAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTAGCAAT
TTCGCATTTGCTCAAAATAATCAAATATCCCTTCAAAATTCCATTCATAAAATCCCTT
Found at i:79629058 original size:130 final size:131
Alignment explanation
Indices: 79628812--79629090 Score: 314
Period size: 130 Copynumber: 2.1 Consensus size: 131
79628802 ATTCCATTCA
* * * *
79628812 TAAAATCCCTTAAACGAAGATGAGATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
1 TAAAATCCCTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
* * ** *
79628877 TGGGTTGCAATTTCGCATTTGCTCAAAATAATCGAATATCACTTTGAAATTTCGCTCGTG-TCTT
66 TGGGTAGCAATTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCG-GCTCTT
79628941 -T
130 CT
* * * * * *
79628942 TAAAATCCCTAAAACGAAGGCGATATTCGGTATTTGGCAATTTGTGGGATCGTGCCCTAACGTGT
1 TAAAATCCCTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
* * *
79629007 TGGGTAGCAATTCCTCG-A-TTGTTTAAAATAATCAAATATCTCTTCAAAATTTCACTCGGCTCT
66 TGGGTAGCAATT--TCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCGGCTCT
79629070 TCT
129 TCT
* *
79629073 AAAAATCCTTTAAAACGA
1 TAAAATCC-CTAAAACGA
79629091 GGGCAATGCT
Statistics
Matches: 124, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
129 1 0.01
130 103 0.83
131 9 0.07
132 11 0.09
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (131 bp):
TAAAATCCCTAAAACGAAGACGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGT
TGGGTAGCAATTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTCACTCGGCTCTTC
T
Found at i:79633666 original size:17 final size:18
Alignment explanation
Indices: 79633636--79633681 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
79633626 ATTTAAATTG
79633636 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
79633654 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
79633670 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
79633682 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:79635826 original size:31 final size:29
Alignment explanation
Indices: 79635788--79635857 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
79635778 ACTATCAAAA
**
79635788 TAGTCACTTTTGTTTAGCTTAGGTTACATTT
1 TAGTCACTTTTGTTT-G-AAAGGTTACATTT
* *
79635819 TAGTCACTTATGTTTGAAATGTTACATTT
1 TAGTCACTTTTGTTTGAAAGGTTACATTT
79635848 TAGTCACTTT
1 TAGTCACTTT
79635858 CGTTATCACG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 19 0.56
30 1 0.03
31 14 0.41
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.50
Consensus pattern (29 bp):
TAGTCACTTTTGTTTGAAAGGTTACATTT
Found at i:79638082 original size:16 final size:16
Alignment explanation
Indices: 79638050--79638090 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
79638040 GTATTATATG
79638050 ATTA-AATA-TAAATA
1 ATTATAATATTAAATA
79638064 ATTAATAATATTAAA-A
1 ATT-ATAATATTAAATA
79638080 ATTATAATATT
1 ATTATAATATT
79638091 TTATATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.12
15 9 0.38
16 8 0.33
17 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTATAATATTAAATA
Found at i:79638084 original size:38 final size:39
Alignment explanation
Indices: 79638042--79638117 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 39
79638032 TTAATAATGT
79638042 ATTAT-ATGATTAAATATAAATAA-TTAATAATATTAAAA
1 ATTATAAT-ATTAAATATAAATAATTTAATAATATTAAAA
** * *
79638080 ATTATAATATTTTATATTAATAATTTAATAATCTTAAA
1 ATTATAATATTAAATATAAATAATTTAATAATATTAAA
79638118 TATTTTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 17 0.53
39 15 0.47
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (39 bp):
ATTATAATATTAAATATAAATAATTTAATAATATTAAAA
Found at i:79639359 original size:31 final size:31
Alignment explanation
Indices: 79639293--79639357 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
79639283 TGGCTTTATG
* **
79639293 AAATTATAAAAATTTGGTTTAAATTTTTTAA
1 AAATTATAAAAATTAGGTTTAAATAATTTAA
79639324 AAATTATAAAAATATAGGTTATAAA-AATTTAA
1 AAATTATAAAAAT-TAGGTT-TAAATAATTTAA
79639356 AA
1 AA
79639358 TTCTATTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 13 0.45
32 12 0.41
33 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (31 bp):
AAATTATAAAAATTAGGTTTAAATAATTTAA
Found at i:79640626 original size:26 final size:24
Alignment explanation
Indices: 79640590--79640650 Score: 72
Period size: 26 Copynumber: 2.5 Consensus size: 24
79640580 TATATAAATT
*
79640590 ATATTAATAATATATTATATGATTAA
1 ATATTAATAATATAATA-AT-ATTAA
79640616 ATATTAATAAT-TAATAATATTAA
1 ATATTAATAATATAATAATATTAA
*
79640639 AAATT-ATAATAT
1 ATATTAATAATAT
79640651 TTTAATAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 5 0.16
23 10 0.31
24 2 0.06
25 4 0.12
26 11 0.34
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
ATATTAATAATATAATAATATTAA
Found at i:79640656 original size:33 final size:30
Alignment explanation
Indices: 79640619--79640703 Score: 82
Period size: 33 Copynumber: 2.7 Consensus size: 30
79640609 TGATTAAATA
79640619 TTAATAATTAATAATATTAAAAATTATAATATT
1 TTAATAATTAATAATATTAAAAA-TA-AAT-TT
* *
79640652 TTAATAATT-ATAAAAATAAAAATAAATTT
1 TTAATAATTAATAATATTAAAAATAAATTT
*
79640681 TATTATCAATATAATAATATTAA
1 T-TAAT-AAT-TAATAATATTAA
79640704 GCTTGATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
29 3 0.07
30 6 0.14
31 5 0.12
32 12 0.28
33 17 0.40
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (30 bp):
TTAATAATTAATAATATTAAAAATAAATTT
Found at i:79640660 original size:17 final size:15
Alignment explanation
Indices: 79640590--79640664 Score: 68
Period size: 16 Copynumber: 5.1 Consensus size: 15
79640580 TATATAAATT
79640590 ATATTAATAA-TATA
1 ATATTAATAATTATA
* *
79640604 TTA-T-ATGATTA-A
1 ATATTAATAATTATA
79640616 ATATTAATAATTAATA
1 ATATTAATAATT-ATA
*
79640632 ATATTAAAAATTATA
1 ATATTAATAATTATA
79640647 ATATTTTAATAATTATA
1 ATA--TTAATAATTATA
79640664 A
1 A
79640665 AAATAAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
12 6 0.12
13 4 0.08
14 7 0.15
15 7 0.15
16 12 0.25
17 12 0.25
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (15 bp):
ATATTAATAATTATA
Found at i:79640675 original size:26 final size:26
Alignment explanation
Indices: 79640626--79640675 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
79640616 ATATTAATAA
* *
79640626 TTAATAATATTAAAAATTATAATATT
1 TTAATAATATTAAAAATAAAAATATT
79640652 TTAATAAT-TATAAAAATAAAAATA
1 TTAATAATAT-TAAAAATAAAAATA
79640676 AATTTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (26 bp):
TTAATAATATTAAAAATAAAAATATT
Found at i:79641235 original size:13 final size:13
Alignment explanation
Indices: 79641217--79641241 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79641207 AGATATGAAA
79641217 AAATGGATCACAT
1 AAATGGATCACAT
79641230 AAATGGATCACA
1 AAATGGATCACA
79641242 AAAGGGAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (13 bp):
AAATGGATCACAT
Found at i:79657752 original size:18 final size:18
Alignment explanation
Indices: 79657729--79657785 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
79657719 CCCAACTACT
* *
79657729 GTATACGTGAACAATACC
1 GTATACGTGAATAGTACC
* *
79657747 GTATACGTAAATAGTATC
1 GTATACGTGAATAGTACC
79657765 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
79657783 GTA
1 GTA
79657786 AACGGTCGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:79660232 original size:18 final size:18
Alignment explanation
Indices: 79660211--79660457 Score: 138
Period size: 18 Copynumber: 13.3 Consensus size: 18
79660201 GAACAATTGT
* *
79660211 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAA
*
79660229 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * * * *
79660247 TTATTTAATAATAACCAT
1 TTATTCAGTAACAATCAA
*
79660265 TTATTCAGTAACGATCAA
1 TTATTCAGTAACAATCAA
*
79660283 TTGATCGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAATCAA
*
79660309 TTATTTAGTAA-AATCAGA
1 TTATTCAGTAACAATCA-A
* * *
79660327 -TATTTAGTAGCAATTAA
1 TTATTCAGTAACAATCAA
* * *
79660344 GTTATTCGGTAACAGTCAT
1 -TTATTCAGTAACAATCAA
* *
79660363 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAATCAA
* *
79660381 TTATTCAGTAATAATCAT
1 TTATTCAGTAACAATCAA
* * *
79660399 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAA
* *
79660417 TTATTCAGTAACAGTCTA
1 TTATTCAGTAACAATCAA
* *
79660435 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
79660453 TTATT
1 TTATT
79660458 TAGAAATAAT
Statistics
Matches: 174, Mismatches: 43, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
17 14 0.08
18 130 0.75
19 13 0.07
20 1 0.01
24 1 0.01
25 2 0.01
26 13 0.07
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:79660737 original size:45 final size:45
Alignment explanation
Indices: 79660639--79660738 Score: 155
Period size: 45 Copynumber: 2.2 Consensus size: 45
79660629 ACAAATCCGG
*
79660639 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCGAT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
* * *
79660684 AACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
*
79660729 AATAGTAACA
1 AACAGTAACA
79660739 CCAGTCGGCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
Found at i:79661823 original size:18 final size:17
Alignment explanation
Indices: 79661800--79661845 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
79661790 TTGTTTCTTC
79661800 TCTGTTTCGTTTCCACAT
1 TCTGTTTC-TTTCCACAT
*
79661818 TCTGTTTCTTT--TCAT
1 TCTGTTTCTTTCCACAT
79661833 TCTGTTTCTTTCC
1 TCTGTTTCTTTCC
79661846 TTTTTATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 14 0.56
17 3 0.12
18 8 0.32
ACGTcount: A:0.07, C:0.26, G:0.09, T:0.59
Consensus pattern (17 bp):
TCTGTTTCTTTCCACAT
Found at i:79666747 original size:18 final size:18
Alignment explanation
Indices: 79666708--79666926 Score: 84
Period size: 18 Copynumber: 11.7 Consensus size: 18
79666698 GAACAATTGT
*
79666708 TTATTCAGTAACAGTAAG
1 TTATTCAGTAACAATAAG
*
79666726 TTATTCGGTAACAATCAA-
1 TTATTCAGTAACAAT-AAG
* * * **
79666744 TTATTTAATAATAACCAG
1 TTATTCAGTAACAATAAG
*
79666762 TTATTCAGTAACGATCAATTG
1 TTATTCAGTAACAAT-AA--G
* *
79666783 ATCGGTTATCCAGTAACAGTCAA-
1 -T----TATTCAGTAACAAT-AAG
* *
79666806 TTATTTAGTAA-AATCAG
1 TTATTCAGTAACAATAAG
* *
79666823 ATATTCAGTAGCAATTAAG
1 TTATTCAGTAACAA-TAAG
* * * *
79666842 TTATTCGGTAACAGTCAT
1 TTATTCAGTAACAATAAG
* *
79666860 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAATAAG
* * *
79666878 TTATTCAGTAATAATCAT
1 TTATTCAGTAACAATAAG
* * *
79666896 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATAAG
79666914 TTATTCAGTAACA
1 TTATTCAGTAACA
79666927 GTAGTCTAAC
Statistics
Matches: 147, Mismatches: 41, Indels: 26
0.69 0.19 0.12
Matches are distributed among these distances:
16 1 0.01
17 11 0.07
18 102 0.69
19 16 0.11
21 1 0.01
22 2 0.01
26 14 0.10
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATAAG
Found at i:79666748 original size:36 final size:36
Alignment explanation
Indices: 79666708--79666926 Score: 129
Period size: 36 Copynumber: 5.9 Consensus size: 36
79666698 GAACAATTGT
* *
79666708 TTATTCAGTAACAGTAAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATAAGTTATTCAGTAACAATCAA
* * * ** *
79666744 TTATTTAATAATAACCAGTTATTCAGTAACGATCAA
1 TTATTCAGTAACAATAAGTTATTCAGTAACAATCAA
* *
79666780 TTGATCGGTTATCCAGTAACAGTCAA-TTATTTAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAAT-AAGTTATTCAGTAACAATCA-A
* * * *
79666824 -TATTCAGTAGCAATTAAGTTATTCGGTAACAGTCAT
1 TTATTCAGTAACAA-TAAGTTATTCAGTAACAATCAA
* * * *
79666860 TTATTCAGTGACAATCAGTTATTCAGTAATAATCAT
1 TTATTCAGTAACAATAAGTTATTCAGTAACAATCAA
* * *
79666896 TTATTCAGTAATATTCAGTTATTCAGTAACA
1 TTATTCAGTAACAATAAGTTATTCAGTAACA
79666927 GTAGTCTAAC
Statistics
Matches: 137, Mismatches: 32, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
35 9 0.07
36 86 0.63
37 17 0.12
42 2 0.01
43 6 0.04
44 16 0.12
45 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAACAATAAGTTATTCAGTAACAATCAA
Found at i:79666900 original size:54 final size:54
Alignment explanation
Indices: 79666709--79666924 Score: 148
Period size: 54 Copynumber: 3.9 Consensus size: 54
79666699 AACAATTGTT
* * * * * * *
79666709 TATTCAGTAAC-AGTAAGTTATTCGGTAACAATCAATTATTTAATAATAACCAGT
1 TATTCAGTAACAATTAAGTTATTCAGTAACAGTCAATTATTCAGTAA-AATCAGA
* * *
79666763 TATTCAGTAACGATCAATTGATCGGTTATCCAGTAACAGTCAATTATTTAGTAAAATCAGA
1 TATTCAGT-A--A-CAATT-A--AGTTATTCAGTAACAGTCAATTATTCAGTAAAATCAGA
* * * * *
79666824 TATTCAGTAGCAATTAAGTTATTCGGTAACAGTCATTTATTCAGTGACAATCAGT
1 TATTCAGTAACAATTAAGTTATTCAGTAACAGTCAATTATTCAGT-AAAATCAGA
* * * * * *
79666879 TATTCAGTAATAA-TCATTTATTCAGTAATATTCAGTTATTCAGTAA
1 TATTCAGTAACAATTAAGTTATTCAGTAACAGTCAATTATTCAGTAA
79666925 CAGTAGTCTA
Statistics
Matches: 128, Mismatches: 25, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
53 1 0.01
54 57 0.45
55 19 0.15
56 1 0.01
57 6 0.05
58 1 0.01
59 2 0.02
60 2 0.02
61 13 0.10
62 26 0.20
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (54 bp):
TATTCAGTAACAATTAAGTTATTCAGTAACAGTCAATTATTCAGTAAAATCAGA
Found at i:79667973 original size:50 final size:50
Alignment explanation
Indices: 79667898--79668074 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
79667888 CCATGGAAAC
79667898 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
79667948 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
79667998 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
79668048 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
79668075 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:79668090 original size:31 final size:31
Alignment explanation
Indices: 79668052--79668253 Score: 298
Period size: 31 Copynumber: 6.5 Consensus size: 31
79668042 AAATGACAAC
79668052 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
79668083 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
79668114 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
79668145 CGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
79668176 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
79668207 TGAAAAATGGTAGC-ACTAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTC-AGCTACCTGATCAG
*
79668238 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
79668254 TGACTACAAG
Statistics
Matches: 154, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
30 1 0.01
31 153 0.99
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:79668271 original size:7 final size:7
Alignment explanation
Indices: 79668259--79668294 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
79668249 AGCTTTGACT
79668259 ACAAGTG
1 ACAAGTG
79668266 ACAAGTG
1 ACAAGTG
79668273 ACAAGTG
1 ACAAGTG
*
79668280 ACAAGAG
1 ACAAGTG
79668287 ACAAGTG
1 ACAAGTG
79668294 A
1 A
79668295 TTTCTGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.47, C:0.14, G:0.28, T:0.11
Consensus pattern (7 bp):
ACAAGTG
Found at i:79668370 original size:47 final size:48
Alignment explanation
Indices: 79668298--79668423 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 48
79668288 CAAGTGATTT
* *
79668298 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * * *
79668345 CTGTATAAGACCATATCTGGAATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
79668393 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
79668424 TTATGTAAAG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 64 0.96
48 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:79669319 original size:18 final size:18
Alignment explanation
Indices: 79669298--79669562 Score: 147
Period size: 18 Copynumber: 14.3 Consensus size: 18
79669288 GAACAATTGT
*
79669298 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAG
* * *
79669316 TTATTCGGTATCAATCAA
1 TTATTCAGTAACAATCAG
* * * *
79669334 TTATTTAATAATAACCAG
1 TTATTCAGTAACAATCAG
*
79669352 TTATTCAGTAACGATCAATTGATCGG
1 TTATTCAGT-A--A-C-A---ATCAG
* * *
79669378 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
*
79669396 TTATTTAGTAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
79669413 ATATTCAGTAGCAATTAAG
1 TTATTCAGTAACAA-TCAG
* * *
79669432 TTATTCGGTAACAGTCAT
1 TTATTCAGTAACAATCAG
*
79669450 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAATCAG
* *
79669468 TTATTCAGTAATAATCAT
1 TTATTCAGTAACAATCAG
* *
79669486 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
*
79669504 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * *
79669522 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
* * *
79669540 TTATTTAGAAATAATCAG
1 TTATTCAGTAACAATCAG
79669558 TTATT
1 TTATT
79669563 TTATACCTTT
Statistics
Matches: 183, Mismatches: 52, Indels: 24
0.71 0.20 0.09
Matches are distributed among these distances:
17 13 0.07
18 138 0.75
19 15 0.08
21 2 0.01
22 1 0.01
23 2 0.01
25 1 0.01
26 11 0.06
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:79669798 original size:45 final size:45
Alignment explanation
Indices: 79669726--79669828 Score: 152
Period size: 45 Copynumber: 2.3 Consensus size: 45
79669716 ACAAATCCGG
*
79669726 AACAGTAACAGTAACAGCATTCAACACACAAAGTGCTGAATCGAT
1 AACAGTAACAGTAACAGCATTCAACACACAAAGTGCCGAATCGAT
* * * *
79669771 AACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAGCATTCAACACACAAAGTGCCGAATCGAT
*
79669816 AATAGTAACAGTA
1 AACAGTAACAGTA
79669829 GTCGGCACAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTAACAGCATTCAACACACAAAGTGCCGAATCGAT
Found at i:79669816 original size:39 final size:40
Alignment explanation
Indices: 79669730--79669845 Score: 110
Period size: 45 Copynumber: 2.8 Consensus size: 40
79669720 ATCCGGAACA
* *
79669730 GTAACAGTAACAGCATTCAACACACAAAGTGCTGAATCGATAACG
1 GTAACAGTAACAGTATTCGACACACAAAGTGC-----CGATAACG
*
79669775 GTAACAGTAACAGTATTCGACACACAAAGTGCCGA-ATCG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGATAACG
* * * *
79669814 GTAATAGTAACAGTAGTCGGCACA-TAAGTGCC
1 GTAACAGTAACAGTATTCGACACACAAAGTGCC
79669846 TGATCAGTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
38 7 0.11
39 24 0.38
40 3 0.05
45 30 0.47
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.19
Consensus pattern (40 bp):
GTAACAGTAACAGTATTCGACACACAAAGTGCCGATAACG
Found at i:79678837 original size:22 final size:24
Alignment explanation
Indices: 79678800--79678843 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
79678790 TCCTGAATAA
79678800 CAAAAAATTTTGAAT-AATAAATC
1 CAAAAAATTTTGAATAAATAAATC
*
79678823 CAAAATATTTT-AATAAATAAA
1 CAAAAAATTTTGAATAAATAAA
79678844 ACCCAAGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (24 bp):
CAAAAAATTTTGAATAAATAAATC
Found at i:79679438 original size:22 final size:21
Alignment explanation
Indices: 79679411--79679451 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79679401 GATAAAAGCT
*
79679411 ACTAATACGGTGTGGATAAACC
1 ACTAAT-CGGTGTAGATAAACC
*
79679433 ACTAATTGGTGTAGATAAA
1 ACTAATCGGTGTAGATAAA
79679452 AACTACCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (21 bp):
ACTAATCGGTGTAGATAAACC
Found at i:79683574 original size:21 final size:21
Alignment explanation
Indices: 79683548--79683588 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79683538 AGACGAGCAA
* *
79683548 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
79683569 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
79683589 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:79685528 original size:23 final size:24
Alignment explanation
Indices: 79685481--79685528 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
79685471 AGGTGGAGAT
79685481 TGTTGAAAAGTCAAATTAAAATGGG
1 TGTTGAAAAGTCAAA-TAAAATGGG
79685506 TGTTGAAAAGTCAAA-AAAATGGG
1 TGTTGAAAAGTCAAATAAAATGGG
79685529 AGGTGCAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.35
25 15 0.65
ACGTcount: A:0.46, C:0.04, G:0.25, T:0.25
Consensus pattern (24 bp):
TGTTGAAAAGTCAAATAAAATGGG
Found at i:79693376 original size:28 final size:29
Alignment explanation
Indices: 79693331--79693407 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 29
79693321 TTTTTAAATT
79693331 TACAATT-AAAAATATAATAATGTTAGGC
1 TACAATTAAAAAATATAATAATGTTAGGC
79693359 -ACAATTAAAAAATATAATAATGTTAGGC
1 TACAATTAAAAAATATAATAATGTTAGGC
* *
79693387 TTC-ATTAAAATA-ATAATAATG
1 TACAATTAAAAAATATAATAATG
79693408 AACAGTCGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 15 0.33
28 29 0.64
29 1 0.02
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.32
Consensus pattern (29 bp):
TACAATTAAAAAATATAATAATGTTAGGC
Found at i:79693503 original size:17 final size:17
Alignment explanation
Indices: 79693483--79693532 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
79693473 TTATATTACA
79693483 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
79693500 AAAT-TTATAATT-TTAAT
1 AAATATT-T-ATTATTAAT
79693517 AAATATTTATTATTAA
1 AAATATTTATTATTAA
79693533 AATATTAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.17
17 19 0.66
18 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:79693537 original size:15 final size:15
Alignment explanation
Indices: 79693482--79693538 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 15
79693472 TTTATATTAC
79693482 AAAATATTTATTATT
1 AAAATATTTATTATT
*
79693497 AATAA-ATTTATAATTTT
1 AA-AATATTTAT--TATT
79693514 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
79693531 AAAATATT
1 AAAATATT
79693539 AATCTTGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 15 0.44
16 3 0.09
17 6 0.18
18 3 0.09
19 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:79693597 original size:15 final size:16
Alignment explanation
Indices: 79693577--79693607 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79693567 AGAATAATTA
79693577 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
79693592 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
79693608 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:79693724 original size:22 final size:21
Alignment explanation
Indices: 79693681--79693740 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
79693671 ATATGATTAA
*
79693681 ATTTAA-ATAATTAAATATGTAT
1 ATTTAATAT-ATTAAA-AAGTAT
*
79693703 GTTTAATAATATTAAAAAGTAT
1 ATTTAAT-ATATTAAAAAGTAT
*
79693725 ATTTAATATTTTAAAA
1 ATTTAATATATTAAAA
79693741 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 8 0.25
22 16 0.50
23 6 0.19
24 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (21 bp):
ATTTAATATATTAAAAAGTAT
Found at i:79702636 original size:20 final size:20
Alignment explanation
Indices: 79702590--79702639 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
79702580 ACCAAAAAAT
*
79702590 AAAAATAAAATAATAATGAC
1 AAAAATAAAATAAAAATGAC
* *
79702610 GATAATAAAATAAAAAATG-C
1 AAAAATAAAAT-AAAAATGAC
79702630 AAAAATAAAA
1 AAAAATAAAA
79702640 GCATATATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (20 bp):
AAAAATAAAATAAAAATGAC
Done.