Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 248 of 253
Found at i:79706720 original size:5 final size:5
Alignment explanation
Indices: 79706710--79706742 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
79706700 GATAGTGAGA
79706710 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
79706743 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:79712155 original size:61 final size:61
Alignment explanation
Indices: 79712048--79712174 Score: 148
Period size: 61 Copynumber: 2.1 Consensus size: 61
79712038 GCCCGCATGC
* * * * *
79712048 CCGTGTGGCCCACATGGCCCAAATAGCCTAACCCGTATGACCCACACGGCCTCACACATAT
1 CCGTGTGGCCCACATGACCCAAATAGCCCAACCCGTATGACACACACAGCCTCACACATAG
* * * * *
79712109 CCGTGTGGTCCATATGACCCAAATAGCCCATA-CCGTGTGTCACACACAGCCTGACACATAG
1 CCGTGTGGCCCACATGACCCAAATAGCCCA-ACCCGTATGACACACACAGCCTCACACATAG
79712170 CCGTG
1 CCGTG
79712175 CAGTGTCGAC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
61 54 0.98
62 1 0.02
ACGTcount: A:0.26, C:0.36, G:0.20, T:0.18
Consensus pattern (61 bp):
CCGTGTGGCCCACATGACCCAAATAGCCCAACCCGTATGACACACACAGCCTCACACATAG
Found at i:79713186 original size:13 final size:13
Alignment explanation
Indices: 79713168--79713199 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
79713158 ATAGTTTAAT
79713168 AATAAAATAAAGA
1 AATAAAATAAAGA
79713181 AATAAAATAAAGA
1 AATAAAATAAAGA
79713194 AATAAA
1 AATAAA
79713200 TGAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (13 bp):
AATAAAATAAAGA
Found at i:79713240 original size:22 final size:23
Alignment explanation
Indices: 79713207--79713250 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
79713197 AAATGAAATA
*
79713207 AAAGAAATGAAA-A-AGAAAAAG
1 AAAGAAACGAAACAGAGAAAAAG
79713228 AAAGCAAACGAAACAGAGAAAAA
1 AAAG-AAACGAAACAGAGAAAAA
79713251 CACGGGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 7 0.37
23 1 0.05
24 7 0.37
ACGTcount: A:0.73, C:0.07, G:0.18, T:0.02
Consensus pattern (23 bp):
AAAGAAACGAAACAGAGAAAAAG
Found at i:79714513 original size:15 final size:15
Alignment explanation
Indices: 79714487--79714534 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
79714477 TATCAAATTT
*
79714487 ATATTAATTGAAATC
1 ATATTGATTGAAATC
* * *
79714502 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
79714517 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
79714531 ATAT
1 ATAT
79714535 ATTATATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:79715190 original size:18 final size:19
Alignment explanation
Indices: 79715169--79715209 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
79715159 AATGAAATGA
79715169 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
79715187 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
79715206 GAAA
1 GAAA
79715210 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:79716098 original size:19 final size:19
Alignment explanation
Indices: 79716074--79716147 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
79716064 ATAATCTTCA
79716074 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
79716093 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79716112 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79716130 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
79716148 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:79716121 original size:37 final size:38
Alignment explanation
Indices: 79716074--79716154 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
79716064 ATAATCTTCA
*
79716074 ATGATATGCAATCTTAGATATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
79716112 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
79716148 A-GATATG
1 ATGATATG
79716155 ATTTTGTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:79716169 original size:23 final size:22
Alignment explanation
Indices: 79716074--79716170 Score: 88
Period size: 19 Copynumber: 4.8 Consensus size: 22
79716064 ATAATCTTCA
79716074 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
79716093 ATGATATGTAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
79716112 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
79716130 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
79716152 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
79716171 GATTTAATTT
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
18 17 0.25
19 32 0.46
22 8 0.12
23 12 0.17
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:79717298 original size:19 final size:19
Alignment explanation
Indices: 79717271--79717308 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
79717261 TGTCTAAAAC
79717271 TTTTCTAAATAACTTTTAA
1 TTTTCTAAATAACTTTTAA
*
79717290 TTTTTTAAATAACTTTTAA
1 TTTTCTAAATAACTTTTAA
79717309 GTCATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTCTAAATAACTTTTAA
Found at i:79724403 original size:16 final size:16
Alignment explanation
Indices: 79724372--79724408 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
79724362 ATGTGAAGAA
79724372 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
79724388 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
79724404 TATTA
1 TATTA
79724409 AAATATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:79724546 original size:22 final size:22
Alignment explanation
Indices: 79724521--79724564 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
79724511 TATGTTTATA
79724521 ATATTAAAA-TTTATAATATTTT
1 ATATTAAAATTTTA-AATATTTT
*
79724543 ATATTAATATTTTAAATATTTT
1 ATATTAAAATTTTAAATATTTT
79724565 TAAAAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
ATATTAAAATTTTAAATATTTT
Found at i:79728010 original size:31 final size:31
Alignment explanation
Indices: 79727972--79728992 Score: 549
Period size: 31 Copynumber: 34.5 Consensus size: 31
79727962 GAAGTTCGTA
79727972 TTCAGAACAAGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * *
79728003 TTCAGAACAGGAAAACATTGAAATGTGTA-T
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * **
79728033 TT-AGAGA-AGGACAATATCGAAGTGCATATT
1 TTCAGA-ACAAGACAACATCGAAGTGTGTATT
* * * * * **
79728063 TTCAAAATAGGACAACACCGAAATGCATATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
79728094 TT-TGAAACAAGACAACACCAAAATGCGTATT
1 TTCAG-AACAAGACAACATCGAAGTGTGTATT
* * * * *
79728125 TTCAAAATAGGACAACACCAAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
79728156 TTCAGAACAAGACAACATTGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
*
79728185 TTCAGAACAAGACAACATCGAAGTGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
79728216 TTCAGAAGAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
79728247 TTTAGAA-TAG-C-AC--CGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
79728271 TTCAGAACAGGACAGCATCAAAATGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
79728302 TTTAAAATAGGACAACA-CTAAAGTGTGTATT
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
* * *
79728333 TTCAGAACAAGACAACATTGAAATGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
79728362 TTCAAAACAAGACGACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
79728393 TTTAGAAGAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
79728424 TTTAGAAC-A-AC-AC--CGAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
79728448 TTCAGAACAGGACAGCACCGAAATGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * *
79728479 TTCAAAATAGGGCAACA-CTGAAGTGTGTATT
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
* **
79728510 TTCAGAACAAGACAACA-CTGAAATACGTA--
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
*
79728539 TTCAGAACAAGACAACATCGAAGTGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
79728570 TTTAGAAGAGGACAACATCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
*
79728601 TTTAGAAC-A-AC-AC--CGAAGTGTGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
79728625 TTCAGAACAAGACAGCA-CTGAAGTTTATATT
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
* * * *
79728656 TTCAAAATAGGACAACACCGAAGTGTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
*
79728687 TCCAGAACAAGACAACA-CTGAAGTGTGTA--
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
*
79728716 TTC-GAAACAAGACAACATCGAAGAGTGTATT
1 TTCAG-AACAAGACAACATCGAAGTGTGTATT
* * * *
79728747 TTTAGAAC-A-AC-AC--CGAA--GCGCATA
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * ** *
79728771 TTCAGAACAGGACAGCGCCGAAGTTTGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * * * *
79728802 TTCAAAATAGGACAACACCGAAGT-TCATATT
1 TTCAGAACAAGACAACATCGAAGTGT-GTATT
* * *
79728833 TTCA-AATTAGGACAACACCGAAGTGTGTATT
1 TTCAGAA-CAAGACAACATCGAAGTGTGTATT
* * * *
79728864 TTTAGGATAAGACAACA-CTGAAGTGCGTA--
1 TTCAGAACAAGACAACATC-GAAGTGTGTATT
*
79728893 TTCAGAACAAGACAACATCAAAGTGTGTATAT
1 TTCAGAACAAGACAACATCGAAGTGTGTAT-T
* *
79728925 TT-AGAAC-A-AC-AC--CAAAGTGCGTA--
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* * *
79728948 TTCAGAACAAAACAACACCGAAGTGCGTATT
1 TTCAGAACAAGACAACATCGAAGTGTGTATT
* *
79728979 TTCAAAATAAGACA
1 TTCAGAACAAGACA
79728993 GTACTGAACT
Statistics
Matches: 776, Mismatches: 146, Indels: 136
0.73 0.14 0.13
Matches are distributed among these distances:
23 2 0.00
24 36 0.05
25 3 0.00
26 54 0.07
27 6 0.01
28 12 0.02
29 190 0.24
30 21 0.03
31 446 0.57
32 6 0.01
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (31 bp):
TTCAGAACAAGACAACATCGAAGTGTGTATT
Found at i:79728086 original size:60 final size:60
Alignment explanation
Indices: 79727944--79728894 Score: 432
Period size: 60 Copynumber: 16.0 Consensus size: 60
79727934 GAGCGCTATG
* * * *
79727944 TCAAAAGAGGACAACACCGAAGT-TCGTATTCAGAACAAGACAACATCGAAGTGTGTATTT
1 TCAAAATAGGACAACACCGAAATGT-GTATTTAGAACAAGACAACATCGAAGTGCGTATTT
* * * ** * * *
79728004 TCAGAACAGGAAAACATTGAAATGTGTATTTAGAGA-AGGACAATATCGAAGTGCATATTT
1 TCAAAATAGGACAACACCGAAATGTGTATTTAGA-ACAAGACAACATCGAAGTGCGTATTT
** * * * *
79728064 TCAAAATAGGACAACACCGAAATGCATATTTTTGAAACAAGACAACACCAAAATGCGTATTT
1 TCAAAATAGGACAACACCGAAATGTGTA-TTTAG-AACAAGACAACATCGAAGTGCGTATTT
*
79728126 TCAAAATAGGACAACACC-AAAGTGTGTATTTTCAGAACAAGACAACATTGAAGTGCGTA--T
1 TCAAAATAGGACAACACCGAAA-TGTGTA-TTT-AGAACAAGACAACATCGAAGTGCGTATTT
* * * * * * * * *
79728186 TCAGAACAAGACAACATCGAAGTGCGTATTTTCAGAAGAGGACAACATCGAAGTGTGTATTT
1 TCAAAATAGGACAACACCGAAATGTGTA-TTT-AGAACAAGACAACATCGAAGTGCGTATTT
* * * * * * * * *
79728248 TTAGAATA-G----CACCGAAGTGCGTATTCAGAACAGGACAGCATCAAAATGCGTATTT
1 TCAAAATAGGACAACACCGAAATGTGTATTTAGAACAAGACAACATCGAAGTGCGTATTT
* * * *
79728303 TTAAAATAGGACAACA-CTAAAGTGTGTATTTTCAGAACAAGACAACATTGAAATGCGTA--T
1 TCAAAATAGGACAACACCGAAA-TGTGTA-TTT-AGAACAAGACAACATCGAAGTGCGTATTT
* * * * * * * *
79728363 TCAAAACAAGACGACATCGAAGTGTGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTT
1 TCAAAATAGGACAACACCGAAATGTGTA--TTTAGAACAAGACAACATCGAAGTGCGTATTT
* * * * * * * *
79728425 T-----TAGAACAACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCGTATTT
1 TCAAAATAGGACAACACCGAAATGTGTATTTAGAACAAGACAACATCGAAGTGCGTATTT
* * * * *
79728480 TCAAAATAGGGCAACACTGAAGTGTGTATTTTCAGAACAAGACAACA-CTGAAATACGTA--T
1 TCAAAATAGGACAACACCGAAATGTGTA-TTT-AGAACAAGACAACATC-GAAGTGCGTATTT
* * * * * * * * *
79728540 TCAGAACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTT
1 TCAAAATAGGACAACACCGAAATGTGTA--TTTAGAACAAGACAACATCGAAGTGCGTATTT
* * * * ***
79728602 T-----TAGAACAACACCGAAGTGTGTATTCAGAACAAGACAGCA-CTGAAGTTTATATTT
1 TCAAAATAGGACAACACCGAAATGTGTATTTAGAACAAGACAACATC-GAAGTGCGTATTT
* *
79728657 TCAAAATAGGACAACACCGAAGTGTGTATTTCCAGAACAAGACAACA-CTGAAGTGTGTA--T
1 TCAAAATAGGACAACACCGAAATGTGTATTT--AGAACAAGACAACATC-GAAGTGCGTATTT
* * * * * *
79728717 TCGAAACAAGACAACATCGAAGA-GTGTATTTTTAGAAC-A-AC-AC--CGAA--GCGCATAT
1 TCAAAATAGGACAACACCGAA-ATGTGTA--TTTAGAACAAGACAACATCGAAGTGCGTATTT
* * * * * * * * * * * *
79728772 TCAGAACAGGACAGCGCCGAAGTTTGTATTTTCAAAATAGGACAACACCGAAGTTCATATTT
1 TCAAAATAGGACAACACCGAAATGTGTA-TTT-AGAACAAGACAACATCGAAGTGCGTATTT
* * * *
79728834 TCAAATTAGGACAACACCGAAGTGTGTATTTTTAGGATAAGACAACA-CTGAAGTGCGTATT
1 TCAAAATAGGACAACACCGAAATGTGTA--TTTAGAACAAGACAACATC-GAAGTGCGTATT
79728895 CAGAACAAGA
Statistics
Matches: 681, Mismatches: 152, Indels: 114
0.72 0.16 0.12
Matches are distributed among these distances:
53 3 0.00
54 5 0.01
55 109 0.16
56 4 0.01
57 50 0.07
58 4 0.01
59 4 0.01
60 274 0.40
61 31 0.05
62 192 0.28
63 5 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (60 bp):
TCAAAATAGGACAACACCGAAATGTGTATTTAGAACAAGACAACATCGAAGTGCGTATTT
Found at i:79728631 original size:24 final size:25
Alignment explanation
Indices: 79728581--79728634 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
79728571 TTAGAAGAGG
* *
79728581 ACAACATCGAAGTGTGTATTTTTAGA
1 ACAACACCGAAGTGTGTA-TTTCAGA
79728607 ACAACACCGAAGTGTGTA-TTCAGA
1 ACAACACCGAAGTGTGTATTTCAGA
79728631 ACAA
1 ACAA
79728635 GACAGCACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 9 0.35
26 17 0.65
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (25 bp):
ACAACACCGAAGTGTGTATTTCAGA
Found at i:79728644 original size:146 final size:146
Alignment explanation
Indices: 79728494--79728823 Score: 423
Period size: 146 Copynumber: 2.3 Consensus size: 146
79728484 AATAGGGCAA
* * * * *
79728494 CACTGAAGTGTGTATTTTCAGAACAAGACAACACTGAAATACGTA-TT-CAGAACAAGACAACA-
1 CACTGAAGTTTGTATTTTCAAAATAGGACAACACCGAAATACGTATTTCCAGAACAAGACAACAC
** * * * *
79728556 TCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACAACACCGAAGTG
66 T-GAAGTGCGTA-TTCGA-AACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCG
**
79728621 TGTATTCAGAACAAGACAG
128 CATATTCAGAACAAGACAG
* * **
79728640 CACTGAAGTTTATATTTTCAAAATAGGACAACACCGAAGTGTGTATTTCCAGAACAAGACAACAC
1 CACTGAAGTTTGTATTTTCAAAATAGGACAACACCGAAATACGTATTTCCAGAACAAGACAACAC
*
79728705 TGAAGTGTGTATTCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCAT
66 TGAAGTGCGTATTCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCAT
*
79728770 ATTCAGAACAGGACAG
131 ATTCAGAACAAGACAG
* *
79728786 CGCCGAAGTTTGTATTTTCAAAATAGGACAACACCGAA
1 CACTGAAGTTTGTATTTTCAAAATAGGACAACACCGAA
79728824 GTTCATATTT
Statistics
Matches: 159, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
146 129 0.81
147 5 0.03
148 24 0.15
149 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (146 bp):
CACTGAAGTTTGTATTTTCAAAATAGGACAACACCGAAATACGTATTTCCAGAACAAGACAACAC
TGAAGTGCGTATTCGAAACAAGACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCAT
ATTCAGAACAAGACAG
Found at i:79728900 original size:146 final size:147
Alignment explanation
Indices: 79728541--79728902 Score: 430
Period size: 146 Copynumber: 2.5 Consensus size: 147
79728531 AATACGTATT
* * * *
79728541 CAGAACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAG
1 CAGAACAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATCGAAGTGTGTA-TTTTAG
* ** *
79728606 AACAACACCGAAGTGTGTATTCAGAACAAGACAGCACTGAAGTTTATATTTTCAAAATAGGACAA
65 AACAACACCGAAGCGCATATTCAGAACAAGACAGCACCGAAGTTTATATTTTCAAAATAGGACAA
*
79728671 CACCGAAGTGTGTATTTC
130 CACCGAAGTGTATATTTC
* ** *
79728689 CAGAACAAGACAACACTGAAGTGTGTA-TTCGA-AACAAGACAACATCGAAGAGTGTATTTTTAG
1 CAGAACAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATCGAAGTGTGTA-TTTTAG
* * *
79728752 AACAACACCGAAGCGCATATTCAGAACAGGACAGCGCCGAAGTTTGTATTTTCAAAATAGGACAA
65 AACAACACCGAAGCGCATATTCAGAACAAGACAGCACCGAAGTTTATATTTTCAAAATAGGACAA
*
79728817 CACCGAAGT-TCATATTTT
130 CACCGAAGTGT-ATATTTC
* * * * * *
79728835 CA-AATTAGGACAACACCGAAGTGTGTATTTTTAGGATAAGACAACA-CTGAAGTGCGTA-TTCA
1 CAGAA-CAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATC-GAAGTGTGTATTTTA
79728897 GAACAA
64 GAACAA
79728903 GACAACATCA
Statistics
Matches: 182, Mismatches: 27, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
145 3 0.02
146 130 0.71
147 7 0.04
148 42 0.23
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (147 bp):
CAGAACAAGACAACACCGAAGTGTGTATTTTTAGAACAAGACAACATCGAAGTGTGTATTTTAGA
ACAACACCGAAGCGCATATTCAGAACAAGACAGCACCGAAGTTTATATTTTCAAAATAGGACAAC
ACCGAAGTGTATATTTC
Found at i:79728916 original size:29 final size:27
Alignment explanation
Indices: 79728875--79728978 Score: 88
Period size: 29 Copynumber: 3.7 Consensus size: 27
79728865 TTAGGATAAG
*
79728875 ACAACACTGAAGTGCGTATTCAGAACAA
1 ACAACAC-AAAGTGCGTATTCAGAACAA
* *
79728903 GACAACATCAAAGTGTGTATATTTAGAAC-A
1 -ACAACA-CAAAGTGCG--TATTCAGAACAA
79728933 AC-AC-CAAAGTGCGTATTCAGAACAAA
1 ACAACACAAAGTGCGTATTCAGAAC-AA
*
79728959 ACAACACCGAAGTGCGTATT
1 ACAACA-CAAAGTGCGTATT
79728979 TTCAAAATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
24 9 0.15
26 11 0.18
27 2 0.03
28 2 0.03
29 26 0.43
30 2 0.03
31 9 0.15
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
ACAACACAAAGTGCGTATTCAGAACAA
Found at i:79728952 original size:323 final size:322
Alignment explanation
Indices: 79728403--79729010 Score: 801
Period size: 323 Copynumber: 1.9 Consensus size: 322
79728393 TTTAGAAGAG
* * *
79728403 GACAACATCGAAGTGTGTATTTTTAGAACAACACCGAAGTGCGTATTCAGAACAGGACAGCACCG
1 GACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGGACAGCACCG
* * * *
79728468 AAATGCGTATTTTCAAAATAGGGCAACACTGAAGTGTGTATTTTCAGAACAAGACAACACTGAAA
66 AAATGCGTATTTTCAAAATAGGACAACACCGAAGTGTATATTTTCAGAACAAGACAACACCGAAA
* * * *
79728533 TACGTATTCAGAACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGT
131 TACGTATTCAGAACAAGACAACATCGAAGTGCGTA-TTTCAGAACAAGACAACATCAAAGTGTGT
* * * * * * **
79728598 ATTTTTAGAACAACACCGAAGTGTGTATTCAGAACAAGACAGCACTGAAGTTTATATTTTCAAAA
195 ATATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTGCATATTTTCAAAA
* *
79728663 TAGGACAACACCGAAGTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTATTCGAAACAA
260 TAAGACAACACCGAACTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTATTCGAAACAA
*
79728726 GACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGGACAGCGCCG
1 GACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGGACAGCACCG
* ** * *
79728791 AAGTTTGTATTTTCAAAATAGGACAACACCGAAGT-TCATATTTTCA-AATTAGGACAACACCGA
66 AAATGCGTATTTTCAAAATAGGACAACACCGAAGTGT-ATATTTTCAGAA-CAAGACAACACCGA
* ** * * *
79728854 AGTGTGTATTTTTAGGATAAGACAACA-CTGAAGTGCGTA-TTCAGAACAAGACAACATCAAAGT
129 AATACGTA--TTCAGAACAAGACAACATC-GAAGTGCGTATTTCAGAACAAGACAACATCAAAGT
*
79728917 GTGTATATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTGCGTATTTTC
191 GTGTATATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTGCATATTTTC
** *
79728982 AAAATAAGACAGTACTGAACTGTGTATTT
256 AAAATAAGACAACACCGAACTGTGTATTT
79729011 AAAACAAGAC
Statistics
Matches: 243, Mismatches: 37, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
322 3 0.01
323 215 0.88
324 1 0.00
325 24 0.10
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (322 bp):
GACAACATCGAAGAGTGTATTTTTAGAACAACACCGAAGCGCATATTCAGAACAGGACAGCACCG
AAATGCGTATTTTCAAAATAGGACAACACCGAAGTGTATATTTTCAGAACAAGACAACACCGAAA
TACGTATTCAGAACAAGACAACATCGAAGTGCGTATTTCAGAACAAGACAACATCAAAGTGTGTA
TATTTAGAACAACACCAAAGTGCGTATTCAGAACAAAACAACACCGAAGTGCATATTTTCAAAAT
AAGACAACACCGAACTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTATTCGAAACAA
Found at i:79728961 original size:26 final size:26
Alignment explanation
Indices: 79728884--79728961 Score: 70
Period size: 26 Copynumber: 2.9 Consensus size: 26
79728874 GACAACACTG
*
79728884 AAGTGCGTATTCAGAACAAGACAACATCA
1 AAGTGCGTATTCAGAAC-A-A-AACACCA
* *
79728913 AAGTGTGTATATTTAGAAC--AACACCA
1 AAGTGCG--TATTCAGAACAAAACACCA
79728939 AAGTGCGTATTCAGAACAAAACA
1 AAGTGCGTATTCAGAACAAAACA
79728962 ACACCGAAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
24 9 0.22
26 16 0.40
29 6 0.15
31 9 0.22
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.21
Consensus pattern (26 bp):
AAGTGCGTATTCAGAACAAAACACCA
Found at i:79728971 original size:177 final size:174
Alignment explanation
Indices: 79727944--79728949 Score: 1012
Period size: 177 Copynumber: 5.7 Consensus size: 174
79727934 GAGCGCTATG
* *
79727944 TCAAAAGAGGACAACACCGAAGT-TCGTA--TTCAGAACAAGACAACA-TCGAAGTGTGTATTTT
1 TCAAAATAGGACAACACCGAAGTGT-GTATTTTCAGAACAAGACAACACT-GAAGTGCGTA--TT
* * * * * **
79728005 CAGAACAGGAAAACATTGAAATGTGTA--TTTAGAGAAGGACAATATCGAAGTGCATATTTTCAA
62 CAGAACAAGACAACATCGAAGTGTGTATTTTTA-AG-A-GACAACATCGAAGTGTGTATTTT---
* * * ** * * * *
79728068 AATAGGACAACACCGAAATGCATATTTTTGAAACAAGACAACACCAAAATGCGTATTT
121 --TAGAACAACACCGAAGTGCGTA-TTCAG-AACAGGACAGCACCGAAATGCATATTT
* *
79728126 TCAAAATAGGACAACACCAAAGTGTGTATTTTCAGAACAAGACAACATTGAAGTGCGTATTCAGA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
* * *
79728191 ACAAGACAACATCGAAGTGCGTATTTTCAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAATA
66 ACAAGACAACATCGAAGTGTGTATTTT--TAAGA-GACAACATCGAAGTGTGTATTTTTAGAACA
* * * *
79728256 GCACCGAAGTGCGTATTCAGAACAGGACAGCATCAAAATGCGTATTT
128 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
* ** * * *
79728303 TTAAAATAGGACAACACTAAAGTGTGTATTTTCAGAACAAGACAACATTGAAATGCGTATTCAAA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
*
79728368 ACAAGACGACATCGAAGTGTGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACA
66 ACAAGACAACATCGAAGTGTGTATTTTT--AAGA-GACAACATCGAAGTGTGTATTTTTAGAACA
*
79728433 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCGTATTT
128 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
* * * *
79728480 TCAAAATAGGGCAACACTGAAGTGTGTATTTTCAGAACAAGACAACACTGAAATACGTATTCAGA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
*
79728545 ACAAGACAACATCGAAGTGCGTATTTTTAGAAGAGGACAACATCGAAGTGTGTATTTTTAGAACA
66 ACAAGACAACATCGAAGTGTGTATTTTT--AAGA-GACAACATCGAAGTGTGTATTTTTAGAACA
* * * * **
79728610 ACACCGAAGTGTGTATTCAGAACAAGACAGCACTGAAGTTTATATTT
128 ACACCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
* *
79728657 TCAAAATAGGACAACACCGAAGTGTGTATTTCCAGAACAAGACAACACTGAAGTGTGTATTC-GA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAG-
* * * * * *
79728721 AACAAGACAACATCGAAGAGTGTATTTTT-AGA-ACAACACCGAA--GCGCATATTCAGAACAGG
65 AACAAGACAACATCGAAGTGTGTATTTTTAAGAGACAACATCGAAGTGTGTATTTTTAGAACA--
** * * * * *
79728782 ACAGCGCCGAAGTTTGTATTTTCAAAATAGGACAACACCGAAGTTCATATTT
128 ACA---CCGAAGTGCGTA--TTCAGAACAGGACAGCACCGAAATGCATATTT
* * * *
79728834 TCAAATTAGGACAACACCGAAGTGTGTATTTTTAGGATAAGACAACACTGAAGTGCGTATTCAGA
1 TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
* * * * *
79728899 ACAAGACAACATCAAAGTGTGTATATTT-AGA-ACAACACCAAAGTGCGTATT
66 ACAAGACAACATCGAAGTGTGTATTTTTAAGAGACAACATCGAAGTGTGTATT
79728950 CAGAACAAAA
Statistics
Matches: 723, Mismatches: 80, Indels: 45
0.85 0.09 0.05
Matches are distributed among these distances:
170 12 0.02
172 13 0.02
174 3 0.00
175 11 0.02
176 1 0.00
177 554 0.77
178 4 0.01
179 22 0.03
182 48 0.07
183 1 0.00
184 50 0.07
185 3 0.00
186 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.24
Consensus pattern (174 bp):
TCAAAATAGGACAACACCGAAGTGTGTATTTTCAGAACAAGACAACACTGAAGTGCGTATTCAGA
ACAAGACAACATCGAAGTGTGTATTTTTAAGAGACAACATCGAAGTGTGTATTTTTAGAACAACA
CCGAAGTGCGTATTCAGAACAGGACAGCACCGAAATGCATATTT
Found at i:79728972 original size:55 final size:58
Alignment explanation
Indices: 79728844--79728977 Score: 166
Period size: 55 Copynumber: 2.3 Consensus size: 58
79728834 TCAAATTAGG
* ** *
79728844 ACAACACCGAAGTGTGTATTTTTAGGATAAGACAACACTGAAGTGCGTATTCAGAACAAG
1 ACAACACCGAAGTGTGTATATTTAGG--AAGACAACACCAAAGTGCGTATTCAGAACAAA
* *
79728904 ACAACATCAAAGTGTGTATATTTA-G-A-ACAACACCAAAGTGCGTATTCAGAACAAA
1 ACAACACCGAAGTGTGTATATTTAGGAAGACAACACCAAAGTGCGTATTCAGAACAAA
*
79728959 ACAACACCGAAGTGCGTAT
1 ACAACACCGAAGTGTGTAT
79728978 TTTCAAAATA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
55 42 0.65
56 1 0.02
59 1 0.02
60 21 0.32
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (58 bp):
ACAACACCGAAGTGTGTATATTTAGGAAGACAACACCAAAGTGCGTATTCAGAACAAA
Found at i:79729038 original size:29 final size:29
Alignment explanation
Indices: 79729006--79729108 Score: 75
Period size: 29 Copynumber: 3.5 Consensus size: 29
79728996 CTGAACTGTG
* *
79729006 TATTTAAAACAAGACAGC-ATCAAAGTACA
1 TATTTAAAACAAAACAACAAT-AAAGTACA
* *
79729035 TATTTTCAAAATAAAACAACAATAAAGTATA
1 TA-TTT-AAAACAAAACAACAATAAAGTACA
** * *
79729066 TATTTAAAACATGAGAACACTGAAA-TACA
1 TATTTAAAACAAAACAACAAT-AAAGTACA
*
79729095 TATTCAAAACAAAA
1 TATTTAAAACAAAA
79729109 TTTTGCGTAT
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
29 27 0.47
30 9 0.16
31 19 0.33
32 2 0.04
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (29 bp):
TATTTAAAACAAAACAACAATAAAGTACA
Found at i:79733000 original size:19 final size:19
Alignment explanation
Indices: 79732976--79733015 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
79732966 TAATTTTAGT
79732976 GAACTTTATTTCTTCTTTG
1 GAACTTTATTTCTTCTTTG
79732995 GAACTTTATTTCTTCTTTG
1 GAACTTTATTTCTTCTTTG
79733014 GA
1 GA
79733016 GTTAAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.55
Consensus pattern (19 bp):
GAACTTTATTTCTTCTTTG
Found at i:79733099 original size:21 final size:21
Alignment explanation
Indices: 79733073--79733115 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
79733063 AGTATAAAGA
79733073 TTAAATTGATGAATTTAATAG
1 TTAAATTGATGAATTTAATAG
79733094 TTAAATTGATGAATTTAATAG
1 TTAAATTGATGAATTTAATAG
79733115 T
1 T
79733116 ATAATAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (21 bp):
TTAAATTGATGAATTTAATAG
Found at i:79735112 original size:17 final size:18
Alignment explanation
Indices: 79735066--79735113 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
79735056 AGTTTAAAAC
*
79735066 TATAAAAAATATTAATTAT
1 TATAAAAAA-ATTAATAAT
*
79735085 TATAAACAAATTAATAAT
1 TATAAAAAAATTAATAAT
79735103 T-TAAAAAAATT
1 TATAAAAAAATT
79735114 CTAAAAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 9 0.35
18 9 0.35
19 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
TATAAAAAAATTAATAAT
Found at i:79735314 original size:18 final size:18
Alignment explanation
Indices: 79735278--79735358 Score: 54
Period size: 18 Copynumber: 4.1 Consensus size: 18
79735268 GTGACATGAG
*
79735278 TTTATATTTTTTATGAATTT
1 TTTAT-TTTTTTA-CAATTT
79735298 TTTATTTTTTTACAATTATT
1 TTTATTTTTTTACAA-T-TT
*
79735318 AATGTATATTTTTTTATAATTT
1 --T-T-TATTTTTTTACAATTT
* *
79735340 TTAATTTTTCTACAATTT
1 TTTATTTTTTTACAATTT
79735358 T
1 T
79735359 GCACTCATCT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
18 16 0.32
19 9 0.18
20 8 0.16
22 3 0.06
23 2 0.04
24 12 0.24
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATTTTTTTACAATTT
Found at i:79735436 original size:16 final size:18
Alignment explanation
Indices: 79735415--79735457 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 18
79735405 CTACAGGTAC
79735415 ATTTTTATAAATT-TT-T
1 ATTTTTATAAATTATTAT
*
79735431 ATTTTTATGAATTATTAAT
1 ATTTTTATAAATTATT-AT
79735450 ATTTTTAT
1 ATTTTTAT
79735458 TTTTTGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.52
17 2 0.09
19 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTTTATAAATTATTAT
Found at i:79735454 original size:24 final size:23
Alignment explanation
Indices: 79735419--79735467 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 23
79735409 AGGTACATTT
79735419 TTATAAA-TTTTTATTTTTATGAA
1 TTATAAATTTTTTATTTTT-TGAA
*
79735442 TTATTAATATTTTTATTTTTTGAA
1 TTATAAAT-TTTTTATTTTTTGAA
79735466 TT
1 TT
79735468 TTTTATAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 6 0.26
25 11 0.48
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (23 bp):
TTATAAATTTTTTATTTTTTGAA
Found at i:79735483 original size:24 final size:25
Alignment explanation
Indices: 79735431--79735483 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
79735421 ATAAATTTTT
* *
79735431 ATTTTTATGAATTATTAATATTTTT
1 ATTTTTATGAATTATTAATAGTTTA
* *
79735456 ATTTTT-TGAATTTTTTATAGTTTA
1 ATTTTTATGAATTATTAATAGTTTA
79735480 ATTT
1 ATTT
79735484 AATTTTAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (25 bp):
ATTTTTATGAATTATTAATAGTTTA
Found at i:79736373 original size:15 final size:14
Alignment explanation
Indices: 79736353--79736400 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
79736343 ATTATAAAAT
*
79736353 TTAAAAGGTTTTAA
1 TTAAAAAGTTTTAA
79736367 TTAAAAA-TTTTATA
1 TTAAAAAGTTTTA-A
*
79736381 TTAAAAATGTTTAAA
1 TTAAAAA-GTTTTAA
79736396 TTAAA
1 TTAAA
79736401 TTATTAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 5 0.17
14 14 0.48
15 6 0.21
16 4 0.14
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (14 bp):
TTAAAAAGTTTTAA
Found at i:79738771 original size:11 final size:11
Alignment explanation
Indices: 79738755--79738785 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
79738745 GGAAACATAC
*
79738755 GCAATAGCAAA
1 GCAATAGAAAA
79738766 GCAATAGAAAA
1 GCAATAGAAAA
79738777 GCAATAGAA
1 GCAATAGAA
79738786 CAAGAAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.58, C:0.13, G:0.19, T:0.10
Consensus pattern (11 bp):
GCAATAGAAAA
Found at i:79741483 original size:14 final size:14
Alignment explanation
Indices: 79741464--79741496 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
79741454 TTAGAAAATT
79741464 AAATTA-TAATTCTA
1 AAATTATTAATT-TA
79741478 AAATTATTAATTTA
1 AAATTATTAATTTA
79741492 AAATT
1 AAATT
79741497 TTATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (14 bp):
AAATTATTAATTTA
Found at i:79745698 original size:3 final size:3
Alignment explanation
Indices: 79745690--79745715 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
79745680 TGAGCAGTAA
79745690 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
79745716 ATTTCTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:79746713 original size:14 final size:15
Alignment explanation
Indices: 79746694--79746735 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
79746684 TGGTAAACTA
79746694 AAAAAATTAAATGCT
1 AAAAAATTAAATGCT
* *
79746709 -CAAAATATAAATGTT
1 AAAAAAT-TAAATGCT
79746724 AAAAAATTAAAT
1 AAAAAATTAAAT
79746736 TATAATTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAAATTAAATGCT
Found at i:79748917 original size:5 final size:5
Alignment explanation
Indices: 79748907--79748939 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
79748897 AAAATGTGTG
79748907 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
79748940 GAATACATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:79756313 original size:21 final size:21
Alignment explanation
Indices: 79756284--79756340 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
79756274 GGTGGATCAG
*
79756284 CTCTCACGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTGTTCAA
79756305 CTCTTACGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTGTTCAA
*
79756326 CTCTTATGAGCTTCT
1 CTCTTACGAGCTTCT
79756341 CTTAATGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.18, C:0.30, G:0.14, T:0.39
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTCAA
Found at i:79758304 original size:22 final size:22
Alignment explanation
Indices: 79758276--79758321 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
79758266 AAACCAAGCC
79758276 AGATAAAATTTTGAACATTAGG
1 AGATAAAATTTTGAACATTAGG
79758298 AGATAAAATTTTGAACATTAGG
1 AGATAAAATTTTGAACATTAGG
79758320 AG
1 AG
79758322 GAACTTGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (22 bp):
AGATAAAATTTTGAACATTAGG
Found at i:79764484 original size:31 final size:32
Alignment explanation
Indices: 79764433--79764517 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
79764423 ATACACACAT
* *
79764433 ATAATATATA-CTAAATAAAATAATAAAAT-A
1 ATAATAAATATCTAATTAAAATAATAAAATAA
* *
79764463 ATAATAAATATCTTATTAAAAT-ATTAAATAA
1 ATAATAAATATCTAATTAAAATAATAAAATAA
*
79764494 ATAATAATTATCTAATT-AAATAAT
1 ATAATAAATATCTAATTAAAATAAT
79764518 TATAAAATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
30 19 0.41
31 27 0.59
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (32 bp):
ATAATAAATATCTAATTAAAATAATAAAATAA
Found at i:79764503 original size:23 final size:23
Alignment explanation
Indices: 79764444--79764503 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
79764434 TAATATATAC
79764444 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
79764464 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
79764487 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
79764504 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:79765580 original size:20 final size:20
Alignment explanation
Indices: 79765529--79765580 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
79765519 AATAAAATTG
*
79765529 TAATATTAAATAAATTATTA
1 TAATATTAAATAAATTATGA
* *
79765549 AAATAATT-AATAATTTATGA
1 TAAT-ATTAAATAAATTATGA
79765569 TAATATTAAATA
1 TAATATTAAATA
79765581 TAAATAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.12
20 20 0.77
21 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TAATATTAAATAAATTATGA
Found at i:79766050 original size:25 final size:25
Alignment explanation
Indices: 79766019--79766094 Score: 152
Period size: 25 Copynumber: 3.0 Consensus size: 25
79766009 CAAGTTAATC
79766019 GAATCGAGTTTCGAGTTCAAGTCAA
1 GAATCGAGTTTCGAGTTCAAGTCAA
79766044 GAATCGAGTTTCGAGTTCAAGTCAA
1 GAATCGAGTTTCGAGTTCAAGTCAA
79766069 GAATCGAGTTTCGAGTTCAAGTCAA
1 GAATCGAGTTTCGAGTTCAAGTCAA
79766094 G
1 G
79766095 TTGAATCTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (25 bp):
GAATCGAGTTTCGAGTTCAAGTCAA
Found at i:79772288 original size:18 final size:18
Alignment explanation
Indices: 79772269--79772340 Score: 99
Period size: 18 Copynumber: 4.0 Consensus size: 18
79772259 CCCAACTACT
* * *
79772269 GTATACGTGAACAGTACT
1 GTATACATGAATAGTACC
* *
79772287 GTATACGTGAATAGTGCC
1 GTATACATGAATAGTACC
79772305 GTATACATGAATAGTACC
1 GTATACATGAATAGTACC
79772323 GTATACATGAATAGTACC
1 GTATACATGAATAGTACC
79772341 ATAAATGGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (18 bp):
GTATACATGAATAGTACC
Found at i:79776454 original size:21 final size:18
Alignment explanation
Indices: 79776444--79776481 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
79776434 AATCTAAATT
79776444 TATTTTATAATAATATAA
1 TATTTTATAATAATATAA
79776462 TATTTTATAATAAT-TAA
1 TATTTTATAATAATATAA
79776479 TAT
1 TAT
79776482 CATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTTTATAATAATATAA
Found at i:79788728 original size:8 final size:8
Alignment explanation
Indices: 79788717--79788751 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
79788707 TAATCTTTTA
79788717 AAAATTAT
1 AAAATTAT
79788725 AAAATTAT
1 AAAATTAT
*
79788733 AAGATTAT
1 AAAATTAT
*
79788741 AAAATGAT
1 AAAATTAT
79788749 AAA
1 AAA
79788752 GTCACATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (8 bp):
AAAATTAT
Found at i:79792979 original size:22 final size:23
Alignment explanation
Indices: 79792938--79792988 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
79792928 CATATACAAA
* *
79792938 AAAAATTTTATTTTTGACCCTTT
1 AAAAATTTGATTTTTAACCCTTT
*
79792961 TAAAATTTGA-TTTTAACCCTTT
1 AAAAATTTGATTTTTAACCCTTT
79792983 AAAAAT
1 AAAAAT
79792989 AAATTTTTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (23 bp):
AAAAATTTGATTTTTAACCCTTT
Found at i:79793888 original size:21 final size:20
Alignment explanation
Indices: 79793864--79793902 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
79793854 GTTTTGTATT
79793864 TATTAAATATATATTATTATA
1 TATTAAATATATA-TATTATA
* *
79793885 TATTACATATCTATATTA
1 TATTAAATATATATATTA
79793903 AAAAAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTAAATATATATATTATA
Found at i:79809076 original size:3 final size:3
Alignment explanation
Indices: 79809068--79809098 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
79809058 TTATCATCCA
79809068 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
79809099 GTGTTTGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79810191 original size:2 final size:2
Alignment explanation
Indices: 79810184--79810220 Score: 65
Period size: 2 Copynumber: 18.0 Consensus size: 2
79810174 TTAAATGTTG
79810184 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA
79810221 GATGAAGTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 32 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:79812461 original size:23 final size:23
Alignment explanation
Indices: 79812435--79812501 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
79812425 GTAAGGCTGC
79812435 AAATGTTAGGTTAGAATTGTAGT
1 AAATGTTAGGTTAGAATTGTAGT
* **
79812458 AAAT-TTA-TTCTAGAATTTGTTTT
1 AAATGTTAGGT-TAGAA-TTGTAGT
* *
79812481 AAATGCTAGGCTAGAATTGTA
1 AAATGTTAGGTTAGAATTGTA
79812502 CTAAGTTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
21 1 0.03
22 8 0.24
23 17 0.52
24 7 0.21
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.42
Consensus pattern (23 bp):
AAATGTTAGGTTAGAATTGTAGT
Found at i:79814699 original size:23 final size:23
Alignment explanation
Indices: 79814668--79814722 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
79814658 TAATGATGTG
79814668 AATAATAAAATAT-ATAAATATAA
1 AATAATAAAATATCA-AAATATAA
* *
79814691 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATA-TAA
79814715 AATAATAA
1 AATAATAA
79814723 TAATTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAATAAAATATCAAAATATAA
Found at i:79814708 original size:8 final size:7
Alignment explanation
Indices: 79814672--79814711 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 7
79814662 GATGTGAATA
79814672 ATAAAAT
1 ATAAAAT
79814679 ATATAAAT
1 ATA-AAAT
79814687 ATAAAAT
1 ATAAAAT
79814694 ATTAAAAT
1 A-TAAAAT
79814702 ATCAAAAT
1 AT-AAAAT
79814710 AT
1 AT
79814712 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 9 0.30
8 21 0.70
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
ATAAAAT
Found at i:79814710 original size:16 final size:15
Alignment explanation
Indices: 79814672--79814718 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
79814662 GATGTGAATA
79814672 ATAAAATA-TATAAAT
1 ATAAAATATTA-AAAT
79814687 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
79814702 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
79814718 A
1 A
79814719 ATAATAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:79814718 original size:8 final size:8
Alignment explanation
Indices: 79814668--79814718 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
79814658 TAATGATGTG
*
79814668 AATAATAA
1 AATATTAA
79814676 AATA-TATA
1 AATATTA-A
79814684 AATA-TAA
1 AATATTAA
79814691 AATATTAA
1 AATATTAA
*
79814699 AATATCAA
1 AATATTAA
*
79814707 AATATTAG
1 AATATTAA
79814715 AATA
1 AATA
79814719 ATAATAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
7 7 0.18
8 31 0.82
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:79814879 original size:31 final size:32
Alignment explanation
Indices: 79814830--79814897 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 32
79814820 ATACTACATC
*
79814830 AATATGTACATAAAAAATAAATAGAAATA-A-A
1 AATATGTACATAAAAAAT-AATAAAAATATACA
* * *
79814861 AATATGTACGTGAGAAATAATAAAAATATACA
1 AATATGTACATAAAAAATAATAAAAATATACA
79814893 AATAT
1 AATAT
79814898 TAGTGTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
30 9 0.29
31 16 0.52
32 6 0.19
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.25
Consensus pattern (32 bp):
AATATGTACATAAAAAATAATAAAAATATACA
Found at i:79814948 original size:30 final size:28
Alignment explanation
Indices: 79814879--79814948 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 28
79814869 CGTGAGAAAT
* *
79814879 AATAAAAATATACAAATATTAGTGTTAA
1 AATAAATACATACAAATATTAGTGTTAA
79814907 AATAAATACATACATAATA-TAGTGTTATA
1 AATAAATACATACA-AATATTAGTGTTA-A
*
79814936 GAATATATACATA
1 -AATAAATACATA
79814949 AGATAACATG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 20 0.56
29 5 0.14
30 11 0.31
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (28 bp):
AATAAATACATACAAATATTAGTGTTAA
Found at i:79815002 original size:25 final size:24
Alignment explanation
Indices: 79814974--79815103 Score: 94
Period size: 23 Copynumber: 5.6 Consensus size: 24
79814964 AAACAAATAT
*
79814974 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATT-AAG
* * *
79814999 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAATATTAAG
*
79815022 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATA-TTAAG
* * *
79815046 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAATATTAAG
*
79815068 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAATATTAAG
*
79815091 AAATATA-ATAATA
1 ATATATACATAATA
79815104 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.02
22 15 0.18
23 41 0.49
24 7 0.08
25 19 0.23
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATACATAATATAATATTAAG
Found at i:79815674 original size:30 final size:30
Alignment explanation
Indices: 79815640--79815757 Score: 202
Period size: 30 Copynumber: 3.9 Consensus size: 30
79815630 GGAGCAAGTG
*
79815640 TGGCTAGTGGATTTGGTGGTGGAAAAGGTA
1 TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
79815670 TGGCTAGTGGAGTTGGTGGTGGAAAAGG-A
1 TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
*
79815699 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGTG
1 -TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
79815730 TGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 TGGCTAGTGGAGTTGGTGGTGGAAAAGG
79815758 CTAAGATTTA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
29 1 0.01
30 83 0.99
ACGTcount: A:0.22, C:0.03, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGCTAGTGGAGTTGGTGGTGGAAAAGGTA
Found at i:79816693 original size:157 final size:159
Alignment explanation
Indices: 79816482--79817088 Score: 793
Period size: 157 Copynumber: 3.7 Consensus size: 159
79816472 CATGTGAGCC
*
79816482 GAGGCTCAACTCACCTCTTGC-ATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAA-TACCTCA
79816545 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAGA-AGAAATTGAA
65 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGACAGAAATTGAA
* *
79816608 AAACATAAATTGAAAATACCTCAGCATGCCT
130 AAACAGAAATTG-AAATACCTCAGCGTGCCT
79816639 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAGAAA-TGAAATACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAATACCTCAG
79816702 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTG--
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGA-CAGAAATTGAA
79816765 AAACAGAAATTGAAATACCTCAGCGTGTCCT
130 AAACAGAAATTGAAATACCTCAGCGTG-CCT
79816796 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAGAGCAGAAATTGAAAACAGAAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT---GA-C---------AAACAGAAAT
*
79816861 TGAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAG
53 TGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAG
*
79816926 AGCAGAAATTGAAAAACAGAAATTGAAATACCTCAGCGTGTCT
118 A-CAGAAATTGAAAAACAGAAATTGAAATACCTCAGCGTGCCT
*
79816969 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAAAAAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT---GA-C---------AAACAGAAA
79817034 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT--CAATATGAGTTGAT
52 TTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
79817089 CTTTGGAACA
Statistics
Matches: 418, Mismatches: 7, Indels: 34
0.91 0.02 0.07
Matches are distributed among these distances:
156 63 0.15
157 90 0.22
158 25 0.06
159 8 0.02
161 2 0.00
162 1 0.00
171 9 0.02
172 75 0.18
173 49 0.12
174 60 0.14
175 36 0.09
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (159 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAATACCTCAG
CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGACAGAAATTGAAA
AACAGAAATTGAAATACCTCAGCGTGCCT
Found at i:79816734 original size:71 final size:72
Alignment explanation
Indices: 79816603--79816852 Score: 290
Period size: 86 Copynumber: 3.3 Consensus size: 72
79816593 GAAGAAGAAA
* * *
79816603 TTGAAAAACATAAATTGAAAATACCTCAGCATG-CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
79816667 GTTGATTT
65 GTTGATTT
79816675 TTGACAAACAGAAA-TGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGACAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
79816739 TTGATTTTT
66 TTGA--TTT
79816748 TTGAAGAGCAGAAATTGAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
1 TT---GA-C--------AAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
79816813 TCGCAATATGAGTTGATTTT
54 TCGCAATATGAGTTGA-TTT
*
79816833 TTGA-AGAGCAGAAATTGAAA
1 TTGACA-AACAGAAATTGAAA
79816853 ACAGAAATTG
Statistics
Matches: 157, Mismatches: 4, Indels: 33
0.81 0.02 0.17
Matches are distributed among these distances:
70 14 0.09
71 38 0.24
72 13 0.08
73 18 0.11
76 2 0.01
77 1 0.01
82 2 0.01
85 15 0.10
86 54 0.34
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (72 bp):
TTGACAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:79816833 original size:86 final size:87
Alignment explanation
Indices: 79816675--79817088 Score: 741
Period size: 86 Copynumber: 4.8 Consensus size: 87
79816665 GAGTTGATTT
79816675 TTGACAAACAGAAA-TGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGA-AAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
79816739 TTGATTTTTTTGAAGAGCAGAAA
65 TTGATTTTTTTGAAGAGCAGAAA
79816762 TTG-AAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
79816826 TGA-TTTTTTGAAGAGCAGAAA
66 TGATTTTTTTGAAGAGCAGAAA
*
79816847 TTGAAAACAGAAATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
79816912 TGATTTTTTTGAAGAGCAGAAA
66 TGATTTTTTTGAAGAGCAGAAA
79816934 TTGAAAAACAGAAATTGAAATACCTCAGCGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTG-AAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
79816998 TTGATTTTTTTGAAGAGCAGAAA
65 TTGATTTTTTTGAAGAGCAGAAA
*
79817021 TTGAAAAAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT--CAATATGAG
1 TTGAAAACAGAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
79817084 TTGAT
65 TTGAT
79817089 CTTTGGAACA
Statistics
Matches: 318, Mismatches: 3, Indels: 13
0.95 0.01 0.04
Matches are distributed among these distances:
85 30 0.09
86 143 0.45
87 97 0.31
88 48 0.15
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (87 bp):
TTGAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAGAGCAGAAA
Found at i:79816859 original size:13 final size:13
Alignment explanation
Indices: 79816841--79816865 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79816831 TTTTGAAGAG
79816841 CAGAAATTGAAAA
1 CAGAAATTGAAAA
79816854 CAGAAATTGAAA
1 CAGAAATTGAAA
79816866 TACCTCAGCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.08, G:0.16, T:0.16
Consensus pattern (13 bp):
CAGAAATTGAAAA
Found at i:79817034 original size:13 final size:13
Alignment explanation
Indices: 79817016--79817040 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79817006 TTTGAAGAGC
79817016 AGAAATTGAAAAA
1 AGAAATTGAAAAA
79817029 AGAAATTGAAAA
1 AGAAATTGAAAA
79817041 TACCTCAGCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTGAAAAA
Found at i:79829015 original size:8 final size:8
Alignment explanation
Indices: 79828990--79829034 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
79828980 TAATGATGTG
*
79828990 AATAATAA
1 AATATTAA
79828998 AATATATAA
1 AATAT-TAA
79829007 AATATTAA
1 AATATTAA
*
79829015 AATATCAA
1 AATATTAA
*
79829023 AATATTAG
1 AATATTAA
79829031 AATA
1 AATA
79829035 ATAATTAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:79829212 original size:25 final size:25
Alignment explanation
Indices: 79829184--79829248 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
79829174 CGTGATAATA
*
79829184 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
79829209 TTAAAAATATATACATAATATA--G
1 TTAAAAATATATACATAATATAGTG
*
79829232 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
79829249 GATAACATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 14 0.37
23 3 0.08
25 21 0.55
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Found at i:79829298 original size:25 final size:25
Alignment explanation
Indices: 79829270--79829403 Score: 77
Period size: 25 Copynumber: 5.6 Consensus size: 25
79829260 GAAAAAAAAT
79829270 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * * *
79829295 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
79829320 ATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-ATAATATA-ATATTAAAG
** *
79829346 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
79829368 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
79829391 AAATAT-AATAATA
1 ATATATAAATAATA
79829404 ATAAAAAGGA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.15
23 18 0.22
24 5 0.06
25 32 0.39
26 1 0.01
27 10 0.12
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:79829350 original size:27 final size:27
Alignment explanation
Indices: 79829265--79829351 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
79829255 ATGTAGAAAA
*
79829265 AAAATATATATAAATAATAT--AATATT
1 AAAATATATATACATAATATAGAAT-TT
* * * *
79829291 -AAAGATATATACATAAAATAGTA-TA
1 AAAATATATATACATAATATAGAATTT
*
79829316 AAATATATATATACGTAATATAGAATTT
1 AAA-ATATATATACATAATATAGAATTT
79829344 AAAATATA
1 AAAATATA
79829352 CCTAATATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
25 17 0.37
26 2 0.04
27 23 0.50
28 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (27 bp):
AAAATATATATACATAATATAGAATTT
Found at i:79840255 original size:12 final size:12
Alignment explanation
Indices: 79840223--79840258 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
79840213 TGGGATATGC
79840223 AATGTATGAATG
1 AATGTATGAATG
**
79840235 AATACATGAATG
1 AATGTATGAATG
79840247 AATGTATGAATG
1 AATGTATGAATG
79840259 TCAAAATGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (12 bp):
AATGTATGAATG
Found at i:79843847 original size:16 final size:15
Alignment explanation
Indices: 79843826--79843873 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
79843816 GATGTGAATA
79843826 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
79843842 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
79843857 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
79843873 A
1 A
79843874 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:79843849 original size:24 final size:24
Alignment explanation
Indices: 79843822--79843877 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
79843812 TAATGATGTG
*
79843822 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
79843846 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
79843870 AATAATAA
1 AATAATAA
79843878 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:79843856 original size:8 final size:8
Alignment explanation
Indices: 79843822--79843873 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
79843812 TAATGATGTG
*
79843822 AATAATAA
1 AATATTAA
79843830 AATATATAA
1 AATAT-TAA
79843839 AATA-TAA
1 AATATTAA
79843846 AATATTAA
1 AATATTAA
*
79843854 AATATCAA
1 AATATTAA
*
79843862 AATATTAG
1 AATATTAA
79843870 AATA
1 AATA
79843874 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:79844091 original size:22 final size:24
Alignment explanation
Indices: 79844028--79844092 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
79844018 CGTGATAATA
*
79844028 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
79844053 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
79844076 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
79844093 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:79844814 original size:30 final size:30
Alignment explanation
Indices: 79844780--79844848 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
79844770 TGGAGCAAGT
79844780 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
*
79844810 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
79844840 GTGGCTAGT
1 GTGGCTAGT
79844849 TGAGAAAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.20, C:0.04, G:0.49, T:0.26
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:79847330 original size:6 final size:7
Alignment explanation
Indices: 79847314--79847340 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
79847304 GAGTGGAAAG
79847314 AAAATTA
1 AAAATTA
79847321 AAAATTA
1 AAAATTA
79847328 AAAATTA
1 AAAATTA
79847335 AAAATT
1 AAAATT
79847341 GAAGGGGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AAAATTA
Found at i:79869533 original size:47 final size:47
Alignment explanation
Indices: 79869469--79869579 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
79869459 GACATTGAGT
* *
79869469 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * * *
79869516 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTTCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
79869563 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
79869580 CTTATCCCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
47 50 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:79873957 original size:38 final size:38
Alignment explanation
Indices: 79873906--79874062 Score: 215
Period size: 38 Copynumber: 3.9 Consensus size: 38
79873896 TGATATGAAA
79873906 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
79873944 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC---T-T
* *
79873986 GAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTG
1 ----TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
*
79874028 TGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
79874063 ATGACAGAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 16
0.84 0.03 0.13
Matches are distributed among these distances:
38 69 0.64
41 1 0.01
42 1 0.01
43 1 0.01
46 35 0.33
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (38 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTT
Found at i:79874011 original size:46 final size:45
Alignment explanation
Indices: 79873944--79874106 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
79873934 TGGCAACCTT
79873944 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATGAAA
*
79873990 TGTGTAAGACCATGGTTGAAAGATACCATCGCAACC----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAA
* *
79874028 TGTGTAAGACCATGGTTGAAAGATACCATGACAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATG-AAA
** * * *
79874074 TGAATAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
79874107 TCACGTCAAA
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 33 0.34
41 2 0.02
42 1 0.01
46 62 0.63
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.22
Consensus pattern (45 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAA
Found at i:79874032 original size:84 final size:84
Alignment explanation
Indices: 79873895--79874096 Score: 316
Period size: 84 Copynumber: 2.4 Consensus size: 84
79873885 AGTGTGCTCT
* *
79873895 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTTTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
*
79873960 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGACAAC
79873979 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
79874044 TGAAAGATACCATGACAAC
66 TGAAAGATACCATGACAAC
* * ** *
79874063 ATGACA-GAAAATGAATAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
79874097 CACTATGGCA
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
83 1 0.01
84 108 0.99
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATCGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGACAAC
Found at i:79874412 original size:23 final size:25
Alignment explanation
Indices: 79874367--79874413 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
79874357 AATAAATATA
*
79874367 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
79874392 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
79874414 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:79879511 original size:40 final size:40
Alignment explanation
Indices: 79879456--79879548 Score: 168
Period size: 40 Copynumber: 2.3 Consensus size: 40
79879446 TGTGTATAGA
79879456 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGC
*
79879496 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGC
*
79879536 ATTCGTGCTGGTT
1 ATTCGTGCGGGTT
79879549 GTTACATCCG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
ATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAGGC
Found at i:79887948 original size:40 final size:40
Alignment explanation
Indices: 79887893--79888028 Score: 236
Period size: 40 Copynumber: 3.4 Consensus size: 40
79887883 TATGTGCATA
*
79887893 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
79887933 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
79887973 GAATTCATGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
79888013 GCATTCGTGCTGGGTT
1 GCATTCGTGC-GGGTT
79888029 TTACATCCGA
Statistics
Matches: 90, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 85 0.94
41 5 0.06
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:79888051 original size:80 final size:80
Alignment explanation
Indices: 79887903--79888051 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 80
79887893 GCATTCGTGT
* * ** *
79887903 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCC
1 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGCCAAATCC
79887968 CGAAGGAATTCATGC
66 CGAAGGAATTCATGC
* *
79887983 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGGTT-TTACATCCGAGCCAAATT
1 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGC-GGGTTATTACAACCGAGCCAAATC
79888047 CCGAA
65 CCGAA
79888052 AGTATTTATG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 56 0.92
81 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGCCAAATCC
CGAAGGAATTCATGC
Found at i:79893765 original size:17 final size:17
Alignment explanation
Indices: 79893740--79893774 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79893730 ATAGTTCGAT
*
79893740 TCGAGCTTTACTTTGTA
1 TCGAACTTTACTTTGTA
*
79893757 TCGAACTTTGCTTTGTA
1 TCGAACTTTACTTTGTA
79893774 T
1 T
79893775 TGTGGTCATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (17 bp):
TCGAACTTTACTTTGTA
Found at i:79895105 original size:29 final size:30
Alignment explanation
Indices: 79895063--79895122 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
79895053 TTATGGAAGA
* *
79895063 GATGGAGAACTTGTTCGTT-AAGAGTTCGT
1 GATGAAGAACTTGTTCGTTGAAGAATTCGT
*
79895092 GATGAAGAACTTGTTTGTTGAAGAATTCGT
1 GATGAAGAACTTGTTCGTTGAAGAATTCGT
79895122 G
1 G
79895123 TCAAGGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.27, C:0.08, G:0.30, T:0.35
Consensus pattern (30 bp):
GATGAAGAACTTGTTCGTTGAAGAATTCGT
Found at i:79895201 original size:16 final size:18
Alignment explanation
Indices: 79895166--79895204 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
79895156 AATCCTTATC
*
79895166 AAAATAAAACACAATGGT
1 AAAATAAAACACAATAGT
79895184 AAAATAAAACA-AA-AGT
1 AAAATAAAACACAATAGT
79895200 AAAAT
1 AAAAT
79895205 CCATATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (18 bp):
AAAATAAAACACAATAGT
Found at i:79903518 original size:26 final size:24
Alignment explanation
Indices: 79903488--79903537 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
79903478 AAATAAAAAA
*
79903488 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
79903514 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
79903538 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:79903643 original size:15 final size:16
Alignment explanation
Indices: 79903613--79903645 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
79903603 AAATGGTTAT
79903613 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
79903630 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
79903645 A
1 A
79903646 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:79905187 original size:3 final size:3
Alignment explanation
Indices: 79905181--79905209 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
79905171 ATTTGTAAAT
79905181 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
79905210 TATAGGCGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:79909686 original size:21 final size:21
Alignment explanation
Indices: 79909660--79909700 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79909650 AGACGAGCAA
* *
79909660 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
79909681 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
79909701 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:79911639 original size:16 final size:16
Alignment explanation
Indices: 79911606--79911639 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79911596 GGAGATTGTT
* *
79911606 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
79911622 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
79911638 AA
1 AA
79911640 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:79915030 original size:21 final size:21
Alignment explanation
Indices: 79914953--79915032 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
79914943 TGTGAAGAGG
*
79914953 GGCACACGACCGTGTGACTGAA
1 GGCACACGCCCGTGTGACT-AA
* * * *
79914975 -ACACACACCCGTGTGAAATGA
1 GGCACACGCCCGTGTG-ACTAA
**
79914996 GGCACACGGTCGTGTGACTAA
1 GGCACACGCCCGTGTGACTAA
79915017 GGCACACGCCCGTGTG
1 GGCACACGCCCGTGTG
79915033 GACCAGGGAC
Statistics
Matches: 43, Mismatches: 13, Indels: 5
0.70 0.21 0.08
Matches are distributed among these distances:
21 30 0.70
22 13 0.30
ACGTcount: A:0.26, C:0.29, G:0.30, T:0.15
Consensus pattern (21 bp):
GGCACACGCCCGTGTGACTAA
Found at i:79915811 original size:9 final size:8
Alignment explanation
Indices: 79915786--79915826 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
79915776 TAATTAGAAT
79915786 AAATTAAA
1 AAATTAAA
79915794 AAATTAAA
1 AAATTAAA
79915802 AAATTAAA
1 AAATTAAA
*
79915810 AAAATAAGA
1 AAATTAA-A
79915819 AATATTAA
1 AA-ATTAA
79915827 CTTAAACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.76
9 3 0.10
10 4 0.14
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:79921377 original size:132 final size:129
Alignment explanation
Indices: 79921070--79921400 Score: 350
Period size: 129 Copynumber: 2.5 Consensus size: 129
79921060 TCAAGAATCA
* * *
79921070 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTT-TAGGTTT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAAG-TT
* * *
79921134 TCACTCATGTTTATTAAAAACCTTTCAAAACAAAAGATGTTCGATGTTTGGCGATTGGAGAATCG
65 TCACTCACGTTTATTAAAAACCTCTCAAAACAAAAGATGTTCGATGTTTGGCGATTGGAGAATAG
* * * * *
79921199 TGCCCTATCGTGCTGGGTTGTGCTTTTTCATTTGCTCTAAACAATCGAAGATCCCTTCGAAGTTT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAAGTTT
* *
79921264 CATTCACGTTT-TCTAAAAACC-CTCTAAAACGAAAGAAGTGTTCGATGTTTGGC-AGTTCAGG-
66 CACTCACGTTTAT-TAAAAACCTCTC-AAAACAAAAG-A-TGTTCGATGTTTGGCGA-TT--GGA
79921325 GAATAG
124 GAATAG
** * * * * * *
79921331 TGCCCTATCGTGCTGGGTTGCAATCTCCCGTTTG-TCCAAAATAATCGAATATCTCTCCGAAATT
1 TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCT-CAAAACAATCGAATATCCCTTCGAAGTT
79921395 TCACTC
65 TCACTC
79921401 GTATTTTCCA
Statistics
Matches: 166, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
128 3 0.02
129 80 0.48
130 4 0.02
131 18 0.11
132 59 0.36
133 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (129 bp):
TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATCCCTTCGAAGTTT
CACTCACGTTTATTAAAAACCTCTCAAAACAAAAGATGTTCGATGTTTGGCGATTGGAGAATAG
Found at i:79921408 original size:132 final size:130
Alignment explanation
Indices: 79920780--79921400 Score: 497
Period size: 132 Copynumber: 4.7 Consensus size: 130
79920770 GAAGACGAGA
* * * *
79920780 TTCGATATTTGGCAATTCGCGGAATAGTGCCCTAACGTG-TCGGGTTGCAATTTCGCGTTTGCTC
1 TTCGATGTTTGGCAGTTCG-GGAATAGTGCCCTATCGTGCT-GGGTTGCAATTTCTCGTTTGCTC
* * * * * *
79920844 AAAATAATCGAATATCCCTTCAAAATTTCACTCGTGCCTTTC-AAAAATTCTTTAAAACGGAGGC
64 AAAATAATCGAATATCCCTCCAAAATTTCACTCATG-TTTTCTAAAAATCCTTTAAAACGAAAG-
*
79920908 GATG
127 AATG
* * * * * * *
79920912 TGCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTTA
1 TTCGATGTTTGGCAGTTCG-GGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCA
* * * * * *
79920977 AAATAACCAAATATCCCTCCAAAATTTCACGCATGTCTTCTAAAAATCATTTAAAACGAAGGCAA
65 AAATAATCGAATATCCCTCCAAAATTTCACTCATGTTTTCTAAAAATCCTTTAAAACGAAAG-AA
*
79921042 TA
129 TG
** * ** **
79921044 TTCGGCGTTTGAC-GATTCAAGAATCA-TGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGCTC
1 TTCGATGTTTGGCAG-TTCGGGAAT-AGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTC
* * ** *** *
79921107 AAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTTAT-TAAAAA-CCTTTCAAAACAAAAG
64 AAAATAATCGAATATCCCTCCAAAATTTCACTCATGTTT-TCTAAAAATCCTTT-AAAACGAAAG
79921170 -ATG
127 AATG
* *** * *
79921173 TTCGATGTTTGGC-GATT-GGAGAATCGTGCCCTATCGTGCTGGGTTGTGCTTTTTCATTTGCTC
1 TTCGATGTTTGGCAG-TTCGG-GAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTC
* * * * * * * * * *
79921236 TAAACAATCGAAGATCCCTTCGAAGTTTCATTCACGTTTTCTAAAAACCCTCTAAAACGAAAGAA
64 AAAATAATCGAATATCCCTCCAAAATTTCACTCATGTTTTCTAAAAATCCTTTAAAACGAAAGAA
79921301 GTG
129 -TG
* *
79921304 TTCGATGTTTGGCAGTTCAGGGAATAGTGCCCTATCGTGCTGGGTTGCAATCTCCCGTTTG-TCC
1 TTCGATGTTTGGCAGTTC-GGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCT-C
* *
79921368 AAAATAATCGAATATCTCTCCGAAATTTCACTC
64 AAAATAATCGAATATCCCTCCAAAATTTCACTC
79921401 GTATTTTCCA
Statistics
Matches: 392, Mismatches: 81, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
128 1 0.00
129 98 0.25
130 9 0.02
131 99 0.25
132 182 0.46
133 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (130 bp):
TTCGATGTTTGGCAGTTCGGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAA
AATAATCGAATATCCCTCCAAAATTTCACTCATGTTTTCTAAAAATCCTTTAAAACGAAAGAATG
Found at i:79922755 original size:28 final size:29
Alignment explanation
Indices: 79922715--79922778 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
79922705 CTTTAATAAT
79922715 TTTTAAAAAATTAAA-T-TAATTTTTATTA
1 TTTTAAAAAATTAAAGTGTAA-TTTTATTA
* *
79922743 TTTTGAAATATTAAAGTGTAATTTTATTA
1 TTTTAAAAAATTAAAGTGTAATTTTATTA
79922772 TTATTAA
1 TT-TTAA
79922779 TTTAGGGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 13 0.43
29 11 0.37
30 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (29 bp):
TTTTAAAAAATTAAAGTGTAATTTTATTA
Found at i:79929835 original size:59 final size:59
Alignment explanation
Indices: 79929770--79929886 Score: 191
Period size: 59 Copynumber: 2.0 Consensus size: 59
79929760 TCTAATATTT
* *
79929770 TAATAATTAAATTAATGGTTGAATCAATTAAATATCAATT-TTCGATTTAATTGGTACTC
1 TAATAATTAAACTAATGGTTGAATCAATTAAATATCAATTCTT-GATTTAATCGGTACTC
*
79929829 TAATAATTAAACTAATGGTTGAATCAATTAAATATCGATTCTTGATTTAATCGGTACT
1 TAATAATTAAACTAATGGTTGAATCAATTAAATATCAATTCTTGATTTAATCGGTACT
79929887 ATGGTTTTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 52 0.96
60 2 0.04
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.41
Consensus pattern (59 bp):
TAATAATTAAACTAATGGTTGAATCAATTAAATATCAATTCTTGATTTAATCGGTACTC
Found at i:79931580 original size:34 final size:34
Alignment explanation
Indices: 79931537--79931604 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
79931527 AGGCACAAGG
*
79931537 TGCTCTCTAGGTGCTAGAAACCTTGTATTGCCTC
1 TGCTCTCTAGGCGCTAGAAACCTTGTATTGCCTC
*
79931571 TGCTCTCTAGGCGCTAGAACCCTTGTATTGCCTC
1 TGCTCTCTAGGCGCTAGAAACCTTGTATTGCCTC
79931605 ACGAGCCAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.16, C:0.29, G:0.21, T:0.34
Consensus pattern (34 bp):
TGCTCTCTAGGCGCTAGAAACCTTGTATTGCCTC
Found at i:79934841 original size:21 final size:21
Alignment explanation
Indices: 79934809--79934862 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
79934799 TACTGGTAAA
*
79934809 AAATGTTCTAATA-TTGCACG
1 AAATTTTCTAATAGTTGCACG
79934829 AAATTTTCATAATAGTTGCACG
1 AAATTTTC-TAATAGTTGCACG
* *
79934851 TAATTTTTTAAT
1 AAATTTTCTAAT
79934863 TAATTGTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.24
21 9 0.31
22 13 0.45
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (21 bp):
AAATTTTCTAATAGTTGCACG
Found at i:79937466 original size:38 final size:38
Alignment explanation
Indices: 79937423--79937499 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
79937413 TTTCAAATTA
79937423 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
79937461 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
79937499 A
1 A
79937500 ATGAATCAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:79937522 original size:47 final size:48
Alignment explanation
Indices: 79937468--79937593 Score: 182
Period size: 48 Copynumber: 2.6 Consensus size: 48
79937458 GTTACATGTT
* *
79937468 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGAATCAATATATG
* * * *
79937515 TAACCGTGGCATATCCACTTAGCACTATATTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGAATCAATATATG
*
79937563 TAACCGTGGCATATCCACTTAGCAACACATT
1 TAACCGTGGCATATCCACTTAGCACCACATT
79937594 TTTCCATTCC
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
47 28 0.41
48 41 0.59
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (48 bp):
TAACCGTGGCATATCCACTTAGCACCACATTACATGAATCAATATATG
Found at i:79941155 original size:10 final size:10
Alignment explanation
Indices: 79941124--79941156 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
79941114 ATTTAAGAAA
79941124 AATAATATAT
1 AATAATATAT
79941134 AATAAGTA-AT
1 AATAA-TATAT
79941144 AATAATATAT
1 AATAATATAT
79941154 AAT
1 AAT
79941157 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
AATAATATAT
Found at i:79941155 original size:17 final size:18
Alignment explanation
Indices: 79941124--79941167 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
79941114 ATTTAAGAAA
79941124 AATAAT-ATATAATAAGT
1 AATAATAATATAATAAGT
*
79941141 AATAATAATAT-ATAATT
1 AATAATAATATAATAAGT
*
79941158 AAAAATAATA
1 AATAATAATA
79941168 CTTATAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAATAATATAATAAGT
Found at i:79941876 original size:2 final size:2
Alignment explanation
Indices: 79941869--79941906 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
79941859 TTTTGTGTAC
*
79941869 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79941907 TCATATGCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:79942753 original size:48 final size:48
Alignment explanation
Indices: 79942674--79942767 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
79942664 AGGGAATTCT
* *
79942674 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
79942722 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
79942768 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:79945268 original size:48 final size:48
Alignment explanation
Indices: 79945189--79945282 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
79945179 AGGGAATTCT
* *
79945189 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
79945237 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
79945283 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:79947643 original size:18 final size:19
Alignment explanation
Indices: 79947622--79947661 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
79947612 GAAACAGGAG
79947622 GAAAAAG-AAAGGAAGAAA
1 GAAAAAGAAAAGGAAGAAA
*
79947640 GAAAAAGAAAAGGGAGAAA
1 GAAAAAGAAAAGGAAGAAA
79947659 GAA
1 GAA
79947662 GGAGACGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
GAAAAAGAAAAGGAAGAAA
Found at i:79948552 original size:24 final size:25
Alignment explanation
Indices: 79948486--79948557 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 25
79948476 GAGCATCTCG
* * *
79948486 TTAT-TAGCTCTTATGAGCTTCTCG
1 TTATATAGCTCTTAGGAGCTTCCCA
* *
79948510 TTATATGGTTCTT-GCGAGCTTCCCA
1 TTATATAGCTCTTAG-GAGCTTCCCA
*
79948535 TTA-ATAGCTCTTAGGAGCATCCC
1 TTATATAGCTCTTAGGAGCTTCCC
79948558 GATTGGTTGT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
24 19 0.51
25 18 0.49
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (25 bp):
TTATATAGCTCTTAGGAGCTTCCCA
Found at i:79948723 original size:24 final size:24
Alignment explanation
Indices: 79948685--79948787 Score: 100
Period size: 24 Copynumber: 4.3 Consensus size: 24
79948675 CTCTCCGGAG
*
79948685 CTTCCTGATATTGGCTCGCTTGAA
1 CTTCCCGATATTGGCTCGCTTGAA
** *
79948709 CTTTTCGATATTGGCTCGTTTGAA
1 CTTCCCGATATTGGCTCGCTTGAA
*
79948733 CTTCCCGATATTGGCTCG-TATGAG
1 CTTCCCGATATTGGCTCGCT-TGAA
* * * * *
79948757 CTTCCCGTTAATGGCTCTCCTAAA
1 CTTCCCGATATTGGCTCGCTTGAA
79948781 CTTCCCG
1 CTTCCCG
79948788 TTATATAGCT
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
23 1 0.02
24 63 0.98
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37
Consensus pattern (24 bp):
CTTCCCGATATTGGCTCGCTTGAA
Found at i:79948772 original size:48 final size:48
Alignment explanation
Indices: 79948685--79948839 Score: 116
Period size: 48 Copynumber: 3.2 Consensus size: 48
79948675 CTCTCCGGAG
* * ** * * *
79948685 CTTCCTGATATTGGCTCGCT-TGAACTTTTCGATATTGGCTCGTTTGAA
1 CTTCCCGATATTGGCTCG-TATGAGCTTCCCGTTAATGGCTCGTATGAA
* *
79948733 CTTCCCGATATTGGCTCGTATGAGCTTCCCGTTAATGGCTC-TCCTAAA
1 CTTCCCGATATTGGCTCGTATGAGCTTCCCGTTAATGGCTCGT-ATGAA
* * * * * *
79948781 CTTCCCGTTATATAGCTCGAAAGAGCTTCCCGTTTATGTGCTCGTATGAG
1 CTTCCCGATAT-TGGCTCGTATGAGCTTCCCGTTAATG-GCTCGTATGAA
79948831 CATTCCCGA
1 C-TTCCCGA
79948840 ATATGAATTG
Statistics
Matches: 84, Mismatches: 17, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
47 2 0.02
48 46 0.55
49 22 0.26
50 7 0.08
51 7 0.08
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (48 bp):
CTTCCCGATATTGGCTCGTATGAGCTTCCCGTTAATGGCTCGTATGAA
Found at i:79948831 original size:25 final size:24
Alignment explanation
Indices: 79948720--79948838 Score: 89
Period size: 24 Copynumber: 4.8 Consensus size: 24
79948710 TTTTCGATAT
* * *
79948720 TGGCTCGTTTGAACTTCCCG-ATA
1 TGGCTCGTATGAGCTTCCCGTTTA
*
79948743 TTGGCTCGTATGAGCTTCCCGTTAA
1 -TGGCTCGTATGAGCTTCCCGTTTA
* * *
79948768 TGGCTC-TCCTAAACTTCCCGTTATA
1 TGGCTCGT-ATGAGCTTCCCGTT-TA
* * *
79948793 TAGCTCGAAAGAGCTTCCCGTTTA
1 TGGCTCGTATGAGCTTCCCGTTTA
79948817 TGTGCTCGTATGAGCATTCCCG
1 TG-GCTCGTATGAGC-TTCCCG
79948839 AATATGAATT
Statistics
Matches: 72, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
23 1 0.01
24 38 0.53
25 27 0.38
26 6 0.08
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (24 bp):
TGGCTCGTATGAGCTTCCCGTTTA
Found at i:79952558 original size:37 final size:39
Alignment explanation
Indices: 79952509--79952590 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 39
79952499 ATTTACCTTA
79952509 ATATTTCATATATACTACT-TATGTT-AAATTG-TTTTAC
1 ATATTTCATATATACTA-TATATGTTAAAATTGTTTTTAC
* * *
79952546 ATATTTCTTATATATTATATATTTTCAAAATTGTTTTTAC
1 ATATTTCATATATACTATATATGTT-AAAATTGTTTTTAC
79952586 ATATT
1 ATATT
79952591 ATTCATTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
36 1 0.03
37 20 0.53
39 6 0.16
40 11 0.29
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.55
Consensus pattern (39 bp):
ATATTTCATATATACTATATATGTTAAAATTGTTTTTAC
Found at i:79953782 original size:25 final size:26
Alignment explanation
Indices: 79953754--79953808 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
79953744 TGATACAAAT
79953754 TGATAATGGGTTAGGT-AATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79953779 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79953805 TGAT
1 TGAT
79953809 GGAATTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 16 0.55
26 13 0.45
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79959766 original size:24 final size:26
Alignment explanation
Indices: 79959710--79959812 Score: 171
Period size: 24 Copynumber: 4.2 Consensus size: 26
79959700 TGATACAAAT
79959710 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79959736 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
79959760 TGATAATGGGTTAGGT-AATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
79959784 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79959809 TGAT
1 TGAT
79959813 GGGAATTTCA
Statistics
Matches: 74, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.11
24 30 0.41
25 29 0.39
26 7 0.09
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79962986 original size:21 final size:20
Alignment explanation
Indices: 79962955--79963015 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
79962945 AATAGTTAAT
*
79962955 TAAATAATAAACATAAAGTAAA
1 TAAACAATAAACA-AAAG-AAA
79962977 TAAA-AATAAACAAAAGAAA
1 TAAACAATAAACAAAAGAAA
*
79962996 TGAAACAATAGA-AAAAGAAA
1 T-AAACAATAAACAAAAGAAA
79963016 CAGAATTGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 4 0.11
20 15 0.42
21 13 0.36
22 4 0.11
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (20 bp):
TAAACAATAAACAAAAGAAA
Found at i:79963774 original size:36 final size:34
Alignment explanation
Indices: 79963697--79963777 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 34
79963687 TGAGTATTGG
*
79963697 TATTGTGA-TATTGAATTGAATTGAATTCATGAA
1 TATTGTGATTATTGAATTGAATTGAATTAATGAA
*
79963730 TATATGTGATTGTTGATATTGAATTGAATGTAAGTGAA
1 TAT-TGTGATTATTGA-ATTGAATTGAAT-TAA-TGAA
79963768 T-TTGTGATTA
1 TATTGTGATTA
79963778 ATGTGTAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
33 3 0.08
34 5 0.12
35 5 0.12
36 19 0.47
37 3 0.08
38 5 0.12
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.44
Consensus pattern (34 bp):
TATTGTGATTATTGAATTGAATTGAATTAATGAA
Found at i:79966126 original size:23 final size:22
Alignment explanation
Indices: 79966095--79966158 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
79966085 CTAGAATTTT
79966095 TCTCTTCTTTTTTTTCTTCTCC
1 TCTCTTCTTTTTTTTCTTCTCC
* *
79966117 TCCTCTTCTTTTTTTCCTTCTTC
1 T-CTCTTCTTTTTTTTCTTCTCC
*
79966140 TCTGCTTCTTCTTTTTCTT
1 TCT-CTTCTTTTTTTTCTT
79966159 TTACTACCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 3 0.08
23 33 0.92
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (22 bp):
TCTCTTCTTTTTTTTCTTCTCC
Found at i:79966137 original size:26 final size:24
Alignment explanation
Indices: 79966096--79966160 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 24
79966086 TAGAATTTTT
79966096 CTCTTC-TTTTTTTTCTTCTCCT-C
1 CTCTTCTTTTTTTTTCTTCT-CTGC
79966119 CTCTTCTTTTTTTCCTTCTTCTCTGC
1 CTCTTCTTTTTTT--TTCTTCTCTGC
*
79966145 TTCTTCTTTTTCTTTT
1 CTCTTCTTTTT-TTTT
79966161 ACTACCTAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
23 6 0.17
24 6 0.17
25 4 0.11
26 18 0.50
27 2 0.06
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.68
Consensus pattern (24 bp):
CTCTTCTTTTTTTTTCTTCTCTGC
Found at i:79968058 original size:3 final size:3
Alignment explanation
Indices: 79968050--79968085 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
79968040 CTACTTTAAT
79968050 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
79968086 CTACTACTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79968315 original size:20 final size:19
Alignment explanation
Indices: 79968292--79968337 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
79968282 AATACTACGC
* *
79968292 TATATATATTTTTGTATTAT
1 TATATATATTTTT-AAATAT
79968312 TATATATATTTTTAAATAT
1 TATATATATTTTTAAATAT
79968331 TATATAT
1 TATATAT
79968338 TGAGTATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATATTTTTAAATAT
Found at i:79968589 original size:24 final size:26
Alignment explanation
Indices: 79968544--79968591 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
79968534 TTAATACATG
79968544 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
79968570 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
79968592 CATACTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Done.