Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 249 of 253
Found at i:79981454 original size:21 final size:21
Alignment explanation
Indices: 79981430--79981478 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 21
79981420 TTTGTTAGAA
79981430 AATATTTATTTTGATGT-TTTT
1 AATATTT-TTTTGATGTATTTT
79981451 AATA--TTTTTGATGTATTTT
1 AATATTTTTTTGATGTATTTT
79981470 ATATATTTT
1 A-ATATTTT
79981479 AAAATTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
18 9 0.38
19 6 0.25
20 3 0.12
21 4 0.17
22 2 0.08
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (21 bp):
AATATTTTTTTGATGTATTTT
Found at i:79981459 original size:18 final size:20
Alignment explanation
Indices: 79981438--79981478 Score: 68
Period size: 18 Copynumber: 2.1 Consensus size: 20
79981428 AAAATATTTA
79981438 TTTTGATGT-TTTTA-ATAT
1 TTTTGATGTATTTTATATAT
79981456 TTTTGATGTATTTTATATAT
1 TTTTGATGTATTTTATATAT
79981476 TTT
1 TTT
79981479 AAAATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.43
19 5 0.24
20 7 0.33
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (20 bp):
TTTTGATGTATTTTATATAT
Found at i:79981509 original size:12 final size:12
Alignment explanation
Indices: 79981479--79981511 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
79981469 TATATATTTT
79981479 AAAATT-ATATA
1 AAAATTAATATA
79981490 AAAA-TAATATA
1 AAAATTAATATA
79981501 AAAATTAATAT
1 AAAATTAATAT
79981512 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:79982173 original size:39 final size:39
Alignment explanation
Indices: 79982118--79982195 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
79982108 TTCCAGTTAA
*
79982118 ACAATACAATTGTCACAAAAGCTATTATAACATGAAAAC
1 ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
79982157 ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
1 ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
79982196 TAGGCATTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.53, C:0.18, G:0.06, T:0.23
Consensus pattern (39 bp):
ACAATACAATTATCACAAAAGCTATTATAACATGAAAAC
Found at i:79983961 original size:22 final size:23
Alignment explanation
Indices: 79983919--79983961 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
79983909 AAGTCTCCGT
* *
79983919 ACGCCAGCATGGCTCCCGTACAC
1 ACGCCAGCATCGCACCCGTACAC
79983942 ACGCCAGCA-CGCACCCGTAC
1 ACGCCAGCATCGCACCCGTAC
79983962 CTGCAAGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.23, C:0.47, G:0.21, T:0.09
Consensus pattern (23 bp):
ACGCCAGCATCGCACCCGTACAC
Found at i:79986392 original size:131 final size:132
Alignment explanation
Indices: 79986145--79986395 Score: 344
Period size: 131 Copynumber: 1.9 Consensus size: 132
79986135 ATAATCATTC
* ** * * *
79986145 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGTGGAATCGTGTCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
79986210 CTGGGTTGCAATTTCGCGTTTGTTCAAAATAATCGAATATCACATCGAAATTTCACTCGCGTCTT
66 CTGGGTTGAAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCGCGTCTT
79986275 TT
131 TT
79986277 AAAA-TTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * *
79986341 -TCGGGTTGAAATTTTGCGTTTGTCCAAAGTAATCGAGCATCCCTTCAAAATTTCA
66 CT-GGGTTGAAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCA
79986396 TTCATATCTT
Statistics
Matches: 103, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 98 0.95
132 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
CTGGGTTGAAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCGCGTCTT
TT
Found at i:79986411 original size:131 final size:132
Alignment explanation
Indices: 79986145--79986426 Score: 334
Period size: 131 Copynumber: 2.1 Consensus size: 132
79986135 ATAATCATTC
* * ** * * *
79986145 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGTGGAATCGTGTCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
79986210 CTGGGTTGCAATTTCGCGTTTGTTCAAAATAATCGAATATCACATCGAAATTTCACTCGCGTCTT
66 CTGGGTTGAAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCACATCTT
79986275 -T
131 CT
*
79986276 TAAAATTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * * *
79986341 -TCGGGTTGAAATTTTGCGTTTGTCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATATCT
66 CT-GGGTTGAAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCACATCT
79986405 TCT
130 TCT
* *
79986408 AAAAATTATTTAAAACGAA
1 AAAAATTCTTCAAAACGAA
79986427 AGCTATATTC
Statistics
Matches: 125, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
130 1 0.01
131 107 0.86
132 17 0.14
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATCCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
CTGGGTTGAAATTTCGCGTTTGTCCAAAATAATCGAACATCACATCAAAATTTCACTCACATCTT
CT
Found at i:79987469 original size:25 final size:25
Alignment explanation
Indices: 79987419--79987471 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
79987409 TACTTTTATA
*
79987419 TATTATTATGTACATTTATTAGTAT
1 TATTATTATGTACATTTATTACTAT
79987444 TATTAGTTATGTATC-TTTA-TACTAT
1 TATTA-TTATGTA-CATTTATTACTAT
79987469 TAT
1 TAT
79987472 AGTATATTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 13 0.52
26 11 0.44
27 1 0.04
ACGTcount: A:0.30, C:0.06, G:0.08, T:0.57
Consensus pattern (25 bp):
TATTATTATGTACATTTATTACTAT
Found at i:79987834 original size:21 final size:24
Alignment explanation
Indices: 79987796--79987847 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 24
79987786 CTTTATTATA
79987796 TATATATTCTTATATATTATG-TG
1 TATATATTCTTATATATTATGTTG
* *
79987819 TATATATT-TTA-GTATTATGTTT
1 TATATATTCTTATATATTATGTTG
79987841 TATATAT
1 TATATAT
79987848 CTATCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 7 0.27
22 11 0.42
23 8 0.31
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.60
Consensus pattern (24 bp):
TATATATTCTTATATATTATGTTG
Found at i:79990240 original size:30 final size:31
Alignment explanation
Indices: 79990194--79990259 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
79990184 GCCTATGTAC
*
79990194 CAAATTAAATCTTAAAGCCAAACTTAAATAT
1 CAAATTAAACCTTAAAGCCAAACTTAAATAT
* * *
79990225 CAAATT-AACCTTAAAGCGAAAGTTAAGTAT
1 CAAATTAAACCTTAAAGCCAAACTTAAATAT
*
79990255 TAAAT
1 CAAAT
79990260 AATGCATTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.50, C:0.14, G:0.08, T:0.29
Consensus pattern (31 bp):
CAAATTAAACCTTAAAGCCAAACTTAAATAT
Found at i:79995385 original size:20 final size:21
Alignment explanation
Indices: 79995360--79995403 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
79995350 AAAATTTTCG
79995360 TTTAAATAGTATTAT-GTTAT
1 TTTAAATAGTATTATGGTTAT
* *
79995380 TTTAAATATTTTTATGGTTAT
1 TTTAAATAGTATTATGGTTAT
79995401 TTT
1 TTT
79995404 TTTGTCCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (21 bp):
TTTAAATAGTATTATGGTTAT
Found at i:79995811 original size:24 final size:23
Alignment explanation
Indices: 79995767--79995811 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
79995757 TAAATTAGTC
* *
79995767 TTTTTTATTAAAATTTTATCCAT
1 TTTTTTATTAAAAATTCATCCAT
79995790 TTTTATTATTAAAAATTCATCC
1 TTTT-TTATTAAAAATTCATCC
79995812 CTATATGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (23 bp):
TTTTTTATTAAAAATTCATCCAT
Found at i:80005436 original size:16 final size:16
Alignment explanation
Indices: 80005384--80005438 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
80005374 GTTTGGCTCA
80005384 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
80005400 CTGCAATTGAATAGAG
1 CTGTAATGGAATAGAG
80005416 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
80005432 TTGTAAT
1 CTGTAAT
80005439 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:80005472 original size:46 final size:44
Alignment explanation
Indices: 80005420--80005511 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 44
80005410 ATAGAGCTGT
**
80005420 AATGGAATAGAGTTGTAATCAGTAATTCA-ACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATT-ATACTGTTTGGTTGAATGG
**
80005466 AATGGAATAGAACTGTAATAGTATTATTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTATACTGTTTGGTTGAATGG
80005510 AA
1 AA
80005512 AGATGTTGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 20 0.49
45 3 0.07
46 17 0.41
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTATACTGTTTGGTTGAATGG
Found at i:80005580 original size:29 final size:29
Alignment explanation
Indices: 80005546--80005604 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
80005536 AAAACTAAAA
80005546 TGACCAGAATACCCTTAGCAGAATTTTTT
1 TGACCAGAATACCCTTAGCAGAATTTTTT
80005575 TGACCAGAATACCCTTAGCAGAATTTTTT
1 TGACCAGAATACCCTTAGCAGAATTTTTT
80005604 T
1 T
80005605 TAGGTAGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (29 bp):
TGACCAGAATACCCTTAGCAGAATTTTTT
Found at i:80005709 original size:58 final size:58
Alignment explanation
Indices: 80005646--80005771 Score: 182
Period size: 58 Copynumber: 2.2 Consensus size: 58
80005636 TTTTAATAAG
* *
80005646 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAATAAAATTCTTAACATA
* * * *
80005704 ATTATTACTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAATAAAATTCTTAACATA
80005762 ATTATTATTA
1 ATTATTATTA
80005772 TATGAATTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 23 0.38
58 37 0.62
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAATAAAATTCTTAACATA
Found at i:80005792 original size:58 final size:57
Alignment explanation
Indices: 80005633--80005799 Score: 171
Period size: 58 Copynumber: 2.9 Consensus size: 57
80005623 TATTATTATT
* * * * *
80005633 AAATTTTAATA-AGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATC
1 AAATTTTAACATA-ATTATTACTAAATATAATTTAA-AAAAATAATATATAATTTAATA
* *
80005691 ATATTTTAACATAATTATTACTAAATATAATTTAATAAAATAATATATAATTTAATA
1 AAATTTTAACATAATTATTACTAAATATAATTTAAAAAAATAATATATAATTTAATA
* *
80005748 AAATTCTTAATATAATTATTA-T-TATATGAA-TTAAAAAATTATAATATATAAT
1 AAATT-TTAACATAATTATTACTAAATAT-AATTTAAAAAA--ATAATATATAAT
80005800 ACTATAAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
56 11 0.12
57 26 0.28
58 55 0.59
59 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (57 bp):
AAATTTTAACATAATTATTACTAAATATAATTTAAAAAAATAATATATAATTTAATA
Found at i:80012020 original size:85 final size:85
Alignment explanation
Indices: 80011871--80012030 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
80011861 TTATGAGAGA
* **
80011871 AGAACAACGGGGTTAACACAATTCAAACCTATATCACATCTGGGTGGGAGAATACTTTCATTATT
1 AGAACAACGCGGTTAACACAATTCAAACCTATATCACATCTGGGTGGGAGAATACCCTCATTATT
*
80011936 AGGCTAACATATGGATTCAT
66 AGGCCAACATATGGATTCAT
* * * *
80011956 AGAACAACGCGGTTAACGCAACTT-GAA-CTCATATCACATCTGGGT-GGAGGAGTACCCTCGTT
1 AGAACAACGCGGTTAACACAA-TTCAAACCT-ATATCACATCTGGGTGGGA-GAATACCCTCATT
80012018 ATTAGGCCAACAT
63 ATTAGGCCAACAT
80012031 TCAGATTCAG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 5 0.08
85 57 0.89
86 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (85 bp):
AGAACAACGCGGTTAACACAATTCAAACCTATATCACATCTGGGTGGGAGAATACCCTCATTATT
AGGCCAACATATGGATTCAT
Found at i:80013074 original size:13 final size:14
Alignment explanation
Indices: 80013056--80013094 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
80013046 TTAAATCTTG
80013056 AATTTAATAATT-A
1 AATTTAATAATTCA
*
80013069 ATTTTAATAATTCA
1 AATTTAATAATTCA
80013083 AATTTAATAATT
1 AATTTAATAATT
80013095 TTCAATGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (14 bp):
AATTTAATAATTCA
Found at i:80016508 original size:20 final size:20
Alignment explanation
Indices: 80016483--80016520 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80016473 AAAGGTTTCG
80016483 TTTAAATAGTATTATGTTAT
1 TTTAAATAGTATTATGTTAT
* *
80016503 TTTAAATATTTTTATGTT
1 TTTAAATAGTATTATGTT
80016521 TACCCTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTAAATAGTATTATGTTAT
Found at i:80022851 original size:14 final size:14
Alignment explanation
Indices: 80022832--80022859 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80022822 TATTTACCTT
80022832 CGATCAATATTATC
1 CGATCAATATTATC
80022846 CGATCAATATTATC
1 CGATCAATATTATC
80022860 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:80023418 original size:23 final size:23
Alignment explanation
Indices: 80023392--80023437 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80023382 GGGATATTAG
80023392 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
80023415 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
80023438 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:80026207 original size:73 final size:73
Alignment explanation
Indices: 80026071--80026208 Score: 240
Period size: 73 Copynumber: 1.9 Consensus size: 73
80026061 CCGTACTATC
* **
80026071 CTCCCACTTCAGGGGTTGATCCACACACCTTCTATCCTTCTTTGTGACTCGACCAATTTCACTAT
1 CTCCCACTTCAGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCGACCAATACCACTAT
80026136 GTGGGATA
66 GTGGGATA
*
80026144 CTCCCACTTCGGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCGACCAATACCACTAT
1 CTCCCACTTCAGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCGACCAATACCACTAT
80026209 TTGAGTCCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 61 1.00
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (73 bp):
CTCCCACTTCAGGGGTTAATCCACACACCTTCTATCCTTCTTTGTGACTCGACCAATACCACTAT
GTGGGATA
Found at i:80027397 original size:10 final size:9
Alignment explanation
Indices: 80027382--80027411 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
80027372 ATTTACACCC
80027382 TTTTTTTTA
1 TTTTTTTTA
80027391 TTTTTTTTA
1 TTTTTTTTA
80027400 TTTTTTTT-
1 TTTTTTTTA
80027408 TTTT
1 TTTT
80027412 GCTCGATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.19
9 17 0.81
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:80033538 original size:19 final size:20
Alignment explanation
Indices: 80033514--80033553 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
80033504 TTTATTTTTA
80033514 TTTTAAATATTT-TAAT-ATT
1 TTTTAAAT-TTTGTAATGATT
80033533 TTTTAAATTTTGTAATGATT
1 TTTTAAATTTTGTAATGATT
80033553 T
1 T
80033554 ATATTATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.16
19 12 0.63
20 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTAAATTTTGTAATGATT
Found at i:80034578 original size:29 final size:30
Alignment explanation
Indices: 80034546--80034608 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
80034536 AAATTTGAAA
*
80034546 TTTAATCGTTATATTTTT-ATTTTTAAAAT
1 TTTAATCATTATATTTTTCATTTTTAAAAT
* * *
80034575 TTTATTCATTCTATTTTTCATTTTTTAAAT
1 TTTAATCATTATATTTTTCATTTTTAAAAT
80034605 TTTA
1 TTTA
80034609 GGTTCAGTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (30 bp):
TTTAATCATTATATTTTTCATTTTTAAAAT
Found at i:80035409 original size:24 final size:23
Alignment explanation
Indices: 80035365--80035411 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
80035355 GAGTAAATTG
*
80035365 ATTTTTTGTTAAAAATTTTATCC
1 ATTTTTTGTTAAAAATCTTATCC
80035388 ATTTTTTCGGTTAAAAA-CTTATCC
1 ATTTTTT--GTTAAAAATCTTATCC
80035412 TTATATATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.30, C:0.13, G:0.06, T:0.51
Consensus pattern (23 bp):
ATTTTTTGTTAAAAATCTTATCC
Found at i:80035918 original size:24 final size:24
Alignment explanation
Indices: 80035872--80035919 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
80035862 AAATTTCAAA
* *
80035872 ATATTTATAAAAATTCTAAAATTT
1 ATATTTATAAAAAATATAAAATTT
* *
80035896 ATATTTTTAAAAAATATATAATTT
1 ATATTTATAAAAAATATAAAATTT
80035920 TTTAAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTATAAAAAATATAAAATTT
Found at i:80036801 original size:92 final size:91
Alignment explanation
Indices: 80036609--80036801 Score: 273
Period size: 91 Copynumber: 2.1 Consensus size: 91
80036599 ACTCTTTGTA
* *
80036609 TAAGGGTTGGGAGATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATGTAGTCCTAAG
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATGTAGTCCTAAG
* *
80036674 ACGACACTTTTGTGGTGACATTTTCC
66 ACGACACTTTTGAGGCGACATTTTCC
* * *
80036700 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTT-TGTCTAGTCCTA
1 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATG--TAGTCCTA
80036764 AGACGACACTTTTGAGGCGACACTTTT-C
64 AGACGACACTTTTGAGGCGACA-TTTTCC
*
80036792 TAAGTGTTGG
1 TAAGGGTTGG
80036802 GATAGACTAC
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
90 2 0.02
91 47 0.52
92 38 0.42
93 4 0.04
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (91 bp):
TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTAAATAAGAGTTGCCTTTATGTAGTCCTAAG
ACGACACTTTTGAGGCGACATTTTCC
Found at i:80036937 original size:132 final size:132
Alignment explanation
Indices: 80036700--80036937 Score: 431
Period size: 132 Copynumber: 1.8 Consensus size: 132
80036690 GACATTTTCC
* *
80036700 TAAGGGTTGGTATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
*
80036765 GACGACACTTTTGAGGCGACACTTTTCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGAGGCGACACTTTCCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTTTG
80036830 TA
131 TA
80036832 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
* *
80036897 GACGACAGTTTTGGGGCGACACTTTCCTAAGTGTTGGGATA
66 GACGACACTTTTGAGGCGACACTTTCCTAAGTGTTGGGATA
80036938 CACTTGTCTG
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 101 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
GACGACACTTTTGAGGCGACACTTTCCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTTTG
TA
Found at i:80037228 original size:21 final size:21
Alignment explanation
Indices: 80037181--80037228 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
80037171 TTAGTTTAGG
* * *
80037181 GTTTAAGGTTTAGTGCTTAAA
1 GTTTATGGTTTAGGGATTAAA
* *
80037202 GATTATGGTTTAGGGATTATA
1 GTTTATGGTTTAGGGATTAAA
80037223 GTTTAT
1 GTTTAT
80037229 ATAGTTTAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.46
Consensus pattern (21 bp):
GTTTATGGTTTAGGGATTAAA
Found at i:80037279 original size:22 final size:22
Alignment explanation
Indices: 80037241--80037287 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
80037231 AGTTTAAGGT
* *
80037241 TTTAGGGTTTTTTA-TTTATGGG
1 TTTAGGGTTTATGATTTTA-GGG
80037263 TTTAGGGTTTATGATTTTAGGG
1 TTTAGGGTTTATGATTTTAGGG
80037285 TTT
1 TTT
80037288 TATGATTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.57
Consensus pattern (22 bp):
TTTAGGGTTTATGATTTTAGGG
Found at i:80037291 original size:16 final size:15
Alignment explanation
Indices: 80037263--80037294 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
80037253 TATTTATGGG
80037263 TTTAGGGTTTATGAT
1 TTTAGGGTTTATGAT
80037278 TTTAGGGTTTTATGAT
1 TTTAGGG-TTTATGAT
80037294 T
1 T
80037295 ATGGATTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (15 bp):
TTTAGGGTTTATGAT
Found at i:80037296 original size:22 final size:21
Alignment explanation
Indices: 80037271--80037319 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
80037261 GGTTTAGGGT
80037271 TTATGATTTTAGGGTTTTATGA
1 TTATGA-TTTAGGGTTTTATGA
* *
80037293 TTATGGATTTGGGGTTTTGTGA
1 TTAT-GATTTAGGGTTTTATGA
80037315 TTATG
1 TTATG
80037320 GGTTTGCGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 21 0.88
23 2 0.08
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (21 bp):
TTATGATTTAGGGTTTTATGA
Found at i:80037320 original size:22 final size:22
Alignment explanation
Indices: 80037282--80037325 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
80037272 TATGATTTTA
80037282 GGGTTTTATGATTATGGATTTG
1 GGGTTTTATGATTATGGATTTG
* *
80037304 GGGTTTTGTGATTATGGGTTTG
1 GGGTTTTATGATTATGGATTTG
80037326 CGATTAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (22 bp):
GGGTTTTATGATTATGGATTTG
Found at i:80037510 original size:14 final size:14
Alignment explanation
Indices: 80037491--80037530 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
80037481 ATGGTCTTGA
*
80037491 GGTTTAAGGTTTGT
1 GGTTTAAGGTTTAT
*
80037505 GGTTTAAGGCTTAT
1 GGTTTAAGGTTTAT
*
80037519 GGTTTAGGGTTT
1 GGTTTAAGGTTT
80037531 TGATAAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.15, C:0.03, G:0.35, T:0.47
Consensus pattern (14 bp):
GGTTTAAGGTTTAT
Found at i:80038007 original size:47 final size:47
Alignment explanation
Indices: 80037938--80038150 Score: 372
Period size: 47 Copynumber: 4.5 Consensus size: 47
80037928 TAAGAATGTG
*
80037938 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATTA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
80037985 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
* * *
80038032 TGCATACTTCACTCAGATAAAGTATGTATTAGCAGATTCACTAATAA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
*
80038079 TGCATATTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
1 TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
*
80038126 TGCATACTTTACCCGGGTAAAGTAT
1 TGCATACTTTACCCGGATAAAGTAT
80038151 ACATTATTTA
Statistics
Matches: 156, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (47 bp):
TGCATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAA
Found at i:80038031 original size:27 final size:27
Alignment explanation
Indices: 80038001--80038078 Score: 66
Period size: 18 Copynumber: 3.1 Consensus size: 27
80037991 CTTTACCCGG
80038001 ATAAAGTATGTATTAGCAGATTCACTA
1 ATAAAGTATGTATTAGCAGATTCACTA
*
80038028 AT--A--ATGCA-TA-C---TTCACTCA
1 ATAAAGTATGTATTAGCAGATTCACT-A
80038047 GATAAAGTATGTATTAGCAGATTCACTA
1 -ATAAAGTATGTATTAGCAGATTCACTA
80038075 ATAA
1 ATAA
80038079 TGCATATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 22
0.61 0.03 0.35
Matches are distributed among these distances:
18 6 0.16
19 1 0.03
20 2 0.05
21 1 0.03
22 3 0.08
23 4 0.11
24 4 0.11
25 3 0.08
26 1 0.03
27 6 0.16
28 1 0.03
29 6 0.16
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (27 bp):
ATAAAGTATGTATTAGCAGATTCACTA
Found at i:80041179 original size:73 final size:72
Alignment explanation
Indices: 80041097--80041335 Score: 263
Period size: 73 Copynumber: 3.3 Consensus size: 72
80041087 TTAAATAATA
* * *
80041097 TCTATCCCAACTTTTTTAAGGTTGCTTTAAACAGGTCTATCCCAGCCTTTTTTAAAAGTTACCTT
1 TCTATCCCAACTTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAGCCTTTTTTAAAGGTTGCCTT
80041162 AGACATGG
66 AGACA-GG
* * *
80041170 TCTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GAGTCTATTCC-GACCTTTTTTAAAGGTTGCC
1 TCTATCCCAACTTTTTTAAGGTTGCTTTAGACAG-GTCTATCCCAG-CCTTTTTTAAAGGTTGCC
80041233 TTAGACAGG
64 TTAGACAGG
* * * *
80041242 TCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATGTCGATCCCAACC-TTTTT-AAGGTTG
1 TCTATCCCAA-C-TTTTTTA-AGGTTGCTTTAGAC-AGGTCTATCCCAGCCTTTTTTAAAGGTTG
*
80041305 CTTTAGAC-GG
62 CCTTAGACAGG
80041315 CTCTATCCCAACTGTTTTTAA
1 -TCTATCCCAACT-TTTTTAA
80041336 AAGTTGCCTT
Statistics
Matches: 142, Mismatches: 14, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
72 16 0.11
73 70 0.49
74 30 0.21
75 17 0.12
76 9 0.06
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (72 bp):
TCTATCCCAACTTTTTTAAGGTTGCTTTAGACAGGTCTATCCCAGCCTTTTTTAAAGGTTGCCTT
AGACAGG
Found at i:80041304 original size:111 final size:109
Alignment explanation
Indices: 80041097--80041347 Score: 319
Period size: 111 Copynumber: 2.3 Consensus size: 109
80041087 TTAAATAATA
* *
80041097 TCTATCCCAACTTTTTT-AAGGTTGCTTTAAACAGGTCTATCCCAGCCTTTTTTAAAAGTTACCT
1 TCTATCCCAACTTTTTTAAAGGTTGCCTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCT
*
80041161 TAGACATGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAG-
66 TAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACG-GC
* * * * * **
80041205 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTTATAGGTTGT
1 TCTA-TCCCAACTTTTTTAAAGGTTGCCTTAAACAGGTCTATCCCAACC-TTTTTTAAAAGTTAC
* *
80041270 TTTAGACAAT-GTCGATCCCAACCTTTTTAAGGTTGCTTTAGACGGC
64 CTTAGAC-ATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGGC
*
80041316 TCTATCCCAACTGTTTTTAAAAGTTGCCTTAA
1 TCTATCCCAACT-TTTTTAAAGGTTGCCTTAA
80041348 GCAAGAACTA
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
108 4 0.03
109 11 0.09
110 34 0.28
111 70 0.58
112 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (109 bp):
TCTATCCCAACTTTTTTAAAGGTTGCCTTAAACAGGTCTATCCCAACCTTTTTTAAAAGTTACCT
TAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGGC
Found at i:80041369 original size:184 final size:185
Alignment explanation
Indices: 80041057--80041444 Score: 475
Period size: 184 Copynumber: 2.1 Consensus size: 185
80041047 TATTATACGT
* * * *
80041057 GTCTATCCCAATCTTTTTTTATAGGTTGTTTTAAATAATATCTATCCCAACTTTTTTAAGGTTGC
1 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
* * ** *
80041122 TTTAAACAGGTCTATCCCAGCCTTTTTTAAAAGTTACCTTAGACATGGTCTATCCCAACCTTTTT
66 TTTAAACAGGTCTATCCCAGACTTTTTTAAAAGTTACCTTAGACAAGAACTATACCAACCTTTTT
* *
80041187 AAGGTTGCCTTAGACGA-GTCTATTC-CGACCTTTTTTAAAGGTT-GCCTTAGAC-AG
131 AAGGTTGCCTTAGA-GAGGTCTA-TCACAACCTTTTTCAAAGGTTGGCCTTA-ACTAG
* *
80041241 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAGACAATGTCGATCCCAACCTTTTTAAGGTTGC
1 GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
* * * *
80041306 TTTAGAC-GGCTCTATCCCA-ACTGTTTTTAAAAGTTGCCTTA-AGCAAGAACTATATCGACCTT
66 TTTAAACAGG-TCTATCCCAGACT-TTTTTAAAAGTTACCTTAGA-CAAGAACTATACCAACCTT
* * * *
80041368 TTTAAGGTTGTCTTAGATAGGTTTATCACAACCTTTTTCAAAGGTTGGTCTTAACTAG
128 TTTAAGGTTGCCTTAGAGAGGTCTATCACAACCTTTTTCAAAGGTTGGCCTTAACTAG
*
80041426 GTCTATCCCAACCCTTTTT
1 GTCTATCCCAACCTTTTTT
80041445 AAAGGTCGGC
Statistics
Matches: 175, Mismatches: 22, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
183 8 0.05
184 142 0.81
185 25 0.14
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (185 bp):
GTCTATCCCAACCTTTTTTTATAGGTTGTTTTAAACAATATCGATCCCAACCTTTTTAAGGTTGC
TTTAAACAGGTCTATCCCAGACTTTTTTAAAAGTTACCTTAGACAAGAACTATACCAACCTTTTT
AAGGTTGCCTTAGAGAGGTCTATCACAACCTTTTTCAAAGGTTGGCCTTAACTAG
Found at i:80041370 original size:111 final size:109
Alignment explanation
Indices: 80041097--80041384 Score: 266
Period size: 111 Copynumber: 2.6 Consensus size: 109
80041087 TTAAATAATA
* * * ** * * * **
80041097 TCTA-TCCCAACTTTTTT-AAGGTTGCTTTAAACAGGTCTATCCCAGCCTTTTTTAAAAGTTACC
1 TCTATTCCCAACTTTTTTAAAAGTTGCCTTAGACAGAACTATACCAACCTTTTTT-AAGGTTGTC
*
80041160 TTAGACATGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
65 TTAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
* * * ** *
80041205 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTTATAGGTTGT
1 TCTATTCCCAACTTTTTTAAAAGTTGCCTTAGACAGAACTATACCAACC-TTTTTTA-AGGTTGT
* *
80041270 TTTAGACAAT-GTCGATCCCAACCTTTTTAAGGTTGCTTTAGACG-G
64 CTTAGAC-ATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
* *
80041315 CTCTA-TCCCAACTGTTTTTAAAAGTTGCCTTA-AGCAAGAACTATATCGACC-TTTTTAAGGTT
1 -TCTATTCCCAACT-TTTTTAAAAGTTGCCTTAGA-C-AGAACTATACCAACCTTTTTTAAGGTT
80041377 GTCTTAGA
62 GTCTTAGA
80041385 TAGGTTTATC
Statistics
Matches: 151, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
108 4 0.03
109 23 0.15
110 42 0.28
111 70 0.46
112 12 0.08
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (109 bp):
TCTATTCCCAACTTTTTTAAAAGTTGCCTTAGACAGAACTATACCAACCTTTTTTAAGGTTGTCT
TAGACATGGTCGATCCCAACCTTTTTAAGGTTGCCTTAGACGAG
Found at i:80042789 original size:21 final size:21
Alignment explanation
Indices: 80042756--80042800 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
80042746 AAAGATGTGT
*
80042756 ATTGGATTGAATTGA-GTATAA
1 ATTGGATTAAATTGATGT-TAA
*
80042777 ATTGTATTAAATTGATGTTAA
1 ATTGGATTAAATTGATGTTAA
80042798 ATT
1 ATT
80042801 CATTCATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (21 bp):
ATTGGATTAAATTGATGTTAA
Found at i:80043155 original size:25 final size:25
Alignment explanation
Indices: 80043113--80043179 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
80043103 CGAAAGTGCA
* * *
80043113 TCCCGATATTTGGCTCTTATGAGCG
1 TCCCGTTATATGGCTCTTATAAGCG
* * *
80043138 TCCCGTTATATGGTTCTTGTAAGCT
1 TCCCGTTATATGGCTCTTATAAGCG
*
80043163 TCCCGTTA-ATAGCTCTT
1 TCCCGTTATATGGCTCTT
80043180 TGGAGCATCC
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 7 0.21
25 27 0.79
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (25 bp):
TCCCGTTATATGGCTCTTATAAGCG
Found at i:80045743 original size:16 final size:16
Alignment explanation
Indices: 80045724--80045762 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
80045714 AGAGAGCAGG
*
80045724 GGAAAGAAAG-AAGAAA
1 GGAAAAAAAGAAAG-AA
80045740 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
80045756 GGAAAAA
1 GGAAAAA
80045763 GGAAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:80047894 original size:46 final size:46
Alignment explanation
Indices: 80047843--80048121 Score: 389
Period size: 46 Copynumber: 6.0 Consensus size: 46
80047833 GTGTGCTCTC
*
80047843 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
80047889 TGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
80047935 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
80047981 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * * *
80048027 TGACA-GAAAATAAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACG
1 TGATATG-----AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * **
80048077 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
80048122 ATGACAGAAA
Statistics
Matches: 212, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
45 1 0.00
46 169 0.80
50 41 0.19
51 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:80048095 original size:96 final size:96
Alignment explanation
Indices: 80047850--80048168 Score: 407
Period size: 96 Copynumber: 3.4 Consensus size: 96
80047840 CTCTGATATG
* * * * *
80047850 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATAGT
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGGT
*
80047915 TGAAAGATACCATGGCAACGT----G-ATAT
66 TGAAAGATACCATGGCAACGTGACAGAAAAT
* * * *
80047941 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGTGTAAGACCATGG
1 -AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGG
*
80048006 TTGAAAGATACTATGGCAACGTGACAGAAAAT
65 TTGAAAGATACCATGGCAACGTGACAGAAAAT
* * * **
80048038 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACGTGACATGAAAAGAATAAGACCATGGT
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGGT
*
80048103 TGAAAGATACCATGGCAACATGACAGAAAAT
66 TGAAAGATACCATGGCAACGTGACAGAAAAT
* * *
80048134 GAATGAGTAAGACTATAGTTG-AAGACACTATGGCA
1 AAATGAGTAAGACCATAGTTGAAAGACACCATGGCA
80048169 TCATGTCAAA
Statistics
Matches: 204, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
92 82 0.40
95 14 0.07
96 105 0.51
97 3 0.01
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (96 bp):
AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACGTGATATGAAATGTGTAAGACCATGGT
TGAAAGATACCATGGCAACGTGACAGAAAAT
Found at i:80048095 original size:142 final size:138
Alignment explanation
Indices: 80047843--80048120 Score: 414
Period size: 142 Copynumber: 2.0 Consensus size: 138
80047833 GTGTGCTCTC
* * *
80047843 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCAGAAATGAAATGAGTAAGA
* * * **
80047908 CCATAGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
66 CCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCA
80047973 TGGCAATG
131 TGGCAATG
*
80047981 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACGTGACAGAAAAT-AAATGAG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CAG-AAATGAAATGAG
*
80048045 TAAGACCATAGTTGAAAGACACTATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
61 TAAGACCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
80048110 TACCATGGCAA
126 TACCATGGCAA
80048121 CATGACAGAA
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
138 44 0.35
142 78 0.62
143 3 0.02
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (138 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCAGAAATGAAATGAGTAAGA
CCATAGTTGAAAGACACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCA
TGGCAATG
Found at i:80050147 original size:42 final size:42
Alignment explanation
Indices: 80050101--80050214 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 42
80050091 TTTAATCTTG
* *
80050101 AAAAAAGTCCTAAAGAATATTTACATATTAATTTAAGATTCTA
1 AAAAAAGTCCTAAAGAATATTTA-AAATTAATTTAAAATTCTA
* * *
80050144 AAAAAGATTCCTATACG-ATATTTAAAATTAGTTTAAAATTCTA
1 AAAAA-AGTCCTA-AAGAATATTTAAAATTAATTTAAAATTCTA
* * * *
80050187 AAAAAAATCCTACATAATATTTATAATT
1 AAAAAAGTCCTAAAGAATATTTAAAATT
80050215 TTTCTAGGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
42 17 0.29
43 26 0.45
44 13 0.22
45 2 0.03
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (42 bp):
AAAAAAGTCCTAAAGAATATTTAAAATTAATTTAAAATTCTA
Found at i:80051108 original size:41 final size:41
Alignment explanation
Indices: 80051051--80051134 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
80051041 TAGTAGTAGT
**
80051051 AATGATAATAATAATTTGGACCATTGACAGACCCAAAAAGA
1 AATGATAATAATAATTTAAACCATTGACAGACCCAAAAAGA
* * *
80051092 AATGATAATAATAATTTAAACCATTGACGGGCTCAAAAAGA
1 AATGATAATAATAATTTAAACCATTGACAGACCCAAAAAGA
80051133 AA
1 AA
80051135 AGAAAATTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (41 bp):
AATGATAATAATAATTTAAACCATTGACAGACCCAAAAAGA
Found at i:80051804 original size:11 final size:11
Alignment explanation
Indices: 80051788--80051830 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
80051778 GTATATTTAC
*
80051788 ATTAATATGGT
1 ATTAATATTGT
*
80051799 ATTAATACTTTT
1 ATTAATA-TTGT
80051811 CATTAATATTGT
1 -ATTAATATTGT
80051823 ATTAATAT
1 ATTAATAT
80051831 CTCTATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 15 0.56
12 5 0.19
13 7 0.26
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (11 bp):
ATTAATATTGT
Found at i:80054581 original size:14 final size:13
Alignment explanation
Indices: 80054548--80054595 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
80054538 TTACCTGCAG
*
80054548 TTTTATT-TTTTA
1 TTTTATTATTATA
80054560 TTTT-TTATTATA
1 TTTTATTATTATA
80054572 GTTTTATTATTATA
1 -TTTTATTATTATA
80054586 TTTTGATTAT
1 TTTT-ATTAT
80054596 ATTTTTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
11 2 0.06
12 8 0.26
13 8 0.26
14 13 0.42
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTATTATA
Found at i:80054594 original size:25 final size:26
Alignment explanation
Indices: 80054546--80054605 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
80054536 ATTTACCTGC
* *
80054546 AGTTTTATT-TTTTATTTTTTATTAT
1 AGTTTTATTATTATATTTTTGATTAT
80054571 AGTTTTATTATTATA-TTTTGATTAT
1 AGTTTTATTATTATATTTTTGATTAT
*
80054596 A-TTTTTTTAT
1 AGTTTTATTAT
80054606 ACAATACTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.26
25 19 0.61
26 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (26 bp):
AGTTTTATTATTATATTTTTGATTAT
Found at i:80056052 original size:23 final size:22
Alignment explanation
Indices: 80056026--80056092 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 22
80056016 ATTAATTTTA
*
80056026 AAATTTTTTGAAATATATATTTG
1 AAATATTTT-AAATATATATTTG
*
80056049 AAATATTTTATAATATATATTTTT
1 AAATATTTTA-AATATATA-TTTG
80056073 AAA-ATTTTAAATATATATTT
1 AAATATTTTAAATATATATTT
80056093 TTGAAATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
21 3 0.08
22 9 0.22
23 22 0.55
24 6 0.15
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (22 bp):
AAATATTTTAAATATATATTTG
Found at i:80056092 original size:36 final size:35
Alignment explanation
Indices: 80056054--80056135 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 35
80056044 ATTTGAAATA
80056054 TTTTATAATATATATTTTTAAAATTTTAAATATATAT
1 TTTTA-AATATAT-TTTTTAAAATTTTAAATATATAT
* *
80056091 TTTTGAAAT-TATTTTTTTAAATTTTGAATAT-TATT
1 TTTT-AAATATATTTTTTAAAATTTTAAATATATA-T
80056126 TTTTAAATAT
1 TTTTAAATAT
80056136 TAAATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
34 6 0.15
35 23 0.57
36 3 0.08
37 7 0.17
38 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (35 bp):
TTTTAAATATATTTTTTAAAATTTTAAATATATAT
Found at i:80056094 original size:23 final size:22
Alignment explanation
Indices: 80056021--80056100 Score: 90
Period size: 22 Copynumber: 3.5 Consensus size: 22
80056011 TTGTTATTAA
80056021 TTTTAAAATTTTTTGAAATATATA-
1 TTTTAAAA--TTTT-AAATATATAT
*
80056045 TTTGAAATATTTTATAATATATAT
1 TTTTAAA-ATTTTA-AATATATAT
80056069 TTTTAAAATTTTAAATATATAT
1 TTTTAAAATTTTAAATATATAT
*
80056091 TTTTGAAATT
1 TTTTAAAATT
80056101 ATTTTTTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
22 19 0.38
23 18 0.36
24 12 0.24
25 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (22 bp):
TTTTAAAATTTTAAATATATAT
Found at i:80056117 original size:21 final size:21
Alignment explanation
Indices: 80056091--80056152 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
80056081 AAATATATAT
80056091 TTTTGAAATTATTTTTTTAAA
1 TTTTGAAATTATTTTTTTAAA
80056112 TTTTGAATATTA-TTTTTTAAA
1 TTTTGAA-ATTATTTTTTTAAA
* *
80056133 TATT-AAATATATATTTTTAA
1 TTTTGAAAT-TATTTTTTTAA
80056153 TAATATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
19 2 0.06
20 4 0.11
21 26 0.72
22 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TTTTGAAATTATTTTTTTAAA
Found at i:80056144 original size:23 final size:23
Alignment explanation
Indices: 80056117--80056165 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
80056107 TTAAATTTTG
* *
80056117 AATAT-TATTTTTTA-AATATTA
1 AATATATATTTTTAATAATATAA
80056138 AATATATATTTTTAATAATATAA
1 AATATATATTTTTAATAATATAA
80056161 AATAT
1 AATAT
80056166 TTAAATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 8 0.33
23 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATATATATTTTTAATAATATAA
Found at i:80056165 original size:21 final size:21
Alignment explanation
Indices: 80056117--80056165 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
80056107 TTAAATTTTG
*
80056117 AATATTATTTTTTAAATATTAA
1 AATA-TATTTTTAAAATATTAA
80056139 ATATATATTTTTAATAATA-TAA
1 A-ATATATTTTTAA-AATATTAA
80056161 AATAT
1 AATAT
80056166 TTAAATAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 13 0.54
23 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATATATTTTTAAAATATTAA
Found at i:80056221 original size:28 final size:28
Alignment explanation
Indices: 80056189--80056246 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
80056179 AGATATAACC
*
80056189 TTTTAAATTTATTATT-AATTT-TTTAATA
1 TTTTAAA--TATTATTCAATTTGTTGAATA
80056217 TTTTAAATATTATTCAATTTGTTGAATA
1 TTTTAAATATTATTCAATTTGTTGAATA
80056245 TT
1 TT
80056247 AAAAAATAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 7 0.26
27 5 0.19
28 15 0.56
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTTAAATATTATTCAATTTGTTGAATA
Found at i:80056455 original size:30 final size:30
Alignment explanation
Indices: 80056421--80056490 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
80056411 TAAAATTAAT
*
80056421 TTTAAAATTAATATAAAA-ATATATTTAAAA
1 TTTAAAAAT-ATATAAAATATATATTTAAAA
*
80056451 TTTAAAAATATTTAAAATATATATTTAAAA
1 TTTAAAAATATATAAAATATATATTTAAAA
80056481 TATTATAAAA
1 T-TTA-AAAA
80056491 CAAATAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 7 0.20
30 21 0.60
31 3 0.09
32 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (30 bp):
TTTAAAAATATATAAAATATATATTTAAAA
Found at i:80056539 original size:14 final size:14
Alignment explanation
Indices: 80056438--80056566 Score: 65
Period size: 13 Copynumber: 9.2 Consensus size: 14
80056428 TTAATATAAA
80056438 AATATATTTAAAATTT
1 AATATATTTAAAA--T
*
80056454 AAAAATATTTAAAAT
1 -AATATATTTAAAAT
80056469 -ATATATTTAAAAT
1 AATATATTTAAAAT
* **
80056482 ATTATA-AAACAAAT
1 AATATATTTA-AAAT
* *
80056496 AATAAATTTGAAAGGT
1 AATATATTT-AAA-AT
*
80056512 CATATATTTAAAAT
1 AATATATTTAAAAT
80056526 AATATACTTT-AAAT
1 AATATA-TTTAAAAT
*
80056540 -A-AT-TTAAAAAT
1 AATATATTTAAAAT
*
80056551 CATA-ATTTAAAAT
1 AATATATTTAAAAT
80056564 AAT
1 AAT
80056567 TTAAAAATCA
Statistics
Matches: 85, Mismatches: 17, Indels: 24
0.67 0.13 0.19
Matches are distributed among these distances:
10 2 0.02
11 4 0.05
12 3 0.04
13 24 0.28
14 22 0.26
15 9 0.11
16 9 0.11
17 12 0.14
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (14 bp):
AATATATTTAAAAT
Found at i:80056545 original size:24 final size:25
Alignment explanation
Indices: 80056517--80056596 Score: 89
Period size: 24 Copynumber: 3.3 Consensus size: 25
80056507 AAGGTCATAT
*
80056517 ATTTAAAATAAT-ATACTTT-AAATA
1 ATTTAAAA-AATCATAATTTAAAATA
80056541 ATTT-AAAAATCATAATTTAAAATA
1 ATTTAAAAAATCATAATTTAAAATA
*
80056565 ATTT-AAAAATCATAA-TTAAAAAA
1 ATTTAAAAAATCATAATTTAAAATA
80056588 ATTATAAAA
1 ATT-TAAAA
80056597 CAAATTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
22 3 0.06
23 19 0.38
24 25 0.50
25 3 0.06
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (25 bp):
ATTTAAAAAATCATAATTTAAAATA
Found at i:80056572 original size:23 final size:23
Alignment explanation
Indices: 80056517--80056619 Score: 88
Period size: 24 Copynumber: 4.3 Consensus size: 23
80056507 AAGGTCATAT
*
80056517 ATTTAAAATAATATACTTT-AAATA
1 ATTTAAAATCATA-A-TTTAAAATA
80056541 ATTTAAAAATCATAATTTAAAATA
1 ATTT-AAAATCATAATTTAAAATA
*
80056565 ATTTAAAAATCATAA-TTAAAAAA
1 ATTT-AAAATCATAATTTAAAATA
*
80056588 ATTATAAAA-CA-AATTAAAATATA
1 ATT-TAAAATCATAATTTAAA-ATA
80056611 CATTTAAAA
1 -ATTTAAAA
80056620 GATTATAAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.03
22 6 0.09
23 24 0.35
24 29 0.42
25 8 0.12
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (23 bp):
ATTTAAAATCATAATTTAAAATA
Found at i:80056587 original size:14 final size:14
Alignment explanation
Indices: 80056538--80056586 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
80056528 TATACTTTAA
80056538 ATAATTTAAAAATC
1 ATAATTTAAAAATC
80056552 ATAATTT--AAA--
1 ATAATTTAAAAATC
80056562 ATAATTTAAAAATC
1 ATAATTTAAAAATC
80056576 ATAA-TTAAAAA
1 ATAATTTAAAAA
80056587 AATTATAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
10 7 0.23
12 6 0.19
13 7 0.23
14 11 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATTTAAAAATC
Found at i:80056695 original size:20 final size:20
Alignment explanation
Indices: 80056670--80056743 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
80056660 TAAAATATTT
* *
80056670 AAATATTTTATATTATTAAA
1 AAATATTTTAAATTTTTAAA
*
80056690 AAATATATTAAATTTTTAAA
1 AAATATTTTAAATTTTTAAA
80056710 AAATAATATTTAAATTTTTAAA
1 AAAT-AT-TTTAAATTTTTAAA
*
80056732 AAATAATTTAAA
1 AAATATTTTAAA
80056744 AATAATATTC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
20 27 0.57
21 3 0.06
22 17 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATTTTAAATTTTTAAA
Found at i:80056712 original size:22 final size:22
Alignment explanation
Indices: 80056671--80056738 Score: 95
Period size: 22 Copynumber: 3.1 Consensus size: 22
80056661 AAAATATTTA
* *
80056671 AATATTTTATATTATTAAAAAAT
1 AATA-TTTAAATTTTTAAAAAAT
80056694 -ATA-TTAAATTTTTAAAAAAT
1 AATATTTAAATTTTTAAAAAAT
80056714 AATATTTAAATTTTTAAAAAAT
1 AATATTTAAATTTTTAAAAAAT
80056736 AAT
1 AAT
80056739 TTAAAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
20 15 0.37
21 3 0.07
22 23 0.56
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
AATATTTAAATTTTTAAAAAAT
Found at i:80056747 original size:139 final size:136
Alignment explanation
Indices: 80056421--80056744 Score: 347
Period size: 139 Copynumber: 2.4 Consensus size: 136
80056411 TAAAATTAAT
* * *
80056421 TTTAAAATTAATATAAAAATATATTTAAAATTT-AAAAAT-ATTTAAAATATATATTTAAAATAT
1 TTTAAAA-TAATTTAAAAATATATTTAAAATTTAAAAAATAATTTAAAATATACATTTAAAAGAT
* *
80056484 TATAAAACAAATAATAAATTTGAAAGGTCATATATTTAAAATAATATACTTTAAATAATTTAAAA
65 TATAAAACAAATAATAAATTTGAAAGGTCATATATTTAAAATAAAATACTTTAAATAATTAAAAA
80056549 ATCATAA
130 ATCATAA
* * * * *
80056556 TTTAAAATAATTTAAAAATCATAATTAAAAAAATTATAAAACAAATTAAAATATACATTTAAAAG
1 TTTAAAATAATTTAAAAAT-AT-ATT-TAAAATTTAAAAAATAATTTAAAATATACATTTAAAAG
* * * * *
80056621 ATTATAAAACTAATAATAAATTTTGAAAGGTCATATCTTTAAAATATTTAAATATTTTATATTAT
63 ATTATAAAACAAATAATAAA-TTTGAAAGGTCATATATTTAAAATA---AAATACTTTAAATAAT
80056686 TAAAAAAT-AT-A
124 TAAAAAATCATAA
* *
80056697 -TT-AAAT-TTTTAAAAAATAATATTTAAATTTTTAAAAAATAATTTAAAA
1 TTTAAAATAATTT-AAAAAT-ATATTTAAA-ATTTAAAAAATAATTTAAAA
80056745 ATAATATTCA
Statistics
Matches: 155, Mismatches: 23, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
134 11 0.07
135 9 0.06
136 3 0.02
137 9 0.06
138 25 0.16
139 50 0.32
140 26 0.17
141 1 0.01
142 2 0.01
143 19 0.12
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (136 bp):
TTTAAAATAATTTAAAAATATATTTAAAATTTAAAAAATAATTTAAAATATACATTTAAAAGATT
ATAAAACAAATAATAAATTTGAAAGGTCATATATTTAAAATAAAATACTTTAAATAATTAAAAAA
TCATAA
Found at i:80056750 original size:33 final size:33
Alignment explanation
Indices: 80056708--80056803 Score: 115
Period size: 33 Copynumber: 2.9 Consensus size: 33
80056698 TAAATTTTTA
*
80056708 AAAAATAATATTTAAATTTTTA-AAAAATAATTT
1 AAAAATAATATTTAAA-ATTTAGAAAAATAATTT
*
80056741 AAAAATAATATTCAAAATTTAGAAAAATAATTT
1 AAAAATAATATTTAAAATTTAGAAAAATAATTT
* *
80056774 AAAATACATATATTTAAAAATTA-AAAAATA
1 AAAA-ATA-ATATTTAAAATTTAGAAAAATA
80056804 TATATTATAA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 4 0.07
33 30 0.55
34 9 0.16
35 12 0.22
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.35
Consensus pattern (33 bp):
AAAAATAATATTTAAAATTTAGAAAAATAATTT
Found at i:80056798 original size:22 final size:23
Alignment explanation
Indices: 80056772--80056815 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
80056762 GAAAAATAAT
*
80056772 TTAAAATACATATATT-TAAAAA
1 TTAAAAAACATATATTATAAAAA
*
80056794 TTAAAAAATATATATTATAAAA
1 TTAAAAAACATATATTATAAAA
80056816 CATTTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
TTAAAAAACATATATTATAAAAA
Found at i:80056915 original size:21 final size:20
Alignment explanation
Indices: 80056889--80056958 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 20
80056879 AAATATTTAA
*
80056889 ATATTTTATATTATTAAAAAT
1 ATATTTAATATT-TTAAAAAT
*
80056910 ATATTTAATATTTAAAAAAT
1 ATATTTAATATTTTAAAAAT
*
80056930 AATATTTAAAATTTTAAAAA-
1 -ATATTTAATATTTTAAAAAT
80056950 ATAATTTAA
1 AT-ATTTAA
80056959 AAATAATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
19 2 0.05
20 13 0.30
21 28 0.65
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATTTAATATTTTAAAAAT
Found at i:80056932 original size:14 final size:14
Alignment explanation
Indices: 80056915--80056973 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 14
80056905 AAAATATATT
80056915 TAATATTTAAAAAA
1 TAATATTTAAAAAA
80056929 TAATATTT----AA
1 TAATATTTAAAAAA
80056939 -AAT-TTTAAAAAA
1 TAATATTTAAAAAA
80056951 T-A-ATTT-AAAAA
1 TAATATTTAAAAAA
80056962 TAATATTTAAAA
1 TAATATTTAAAA
80056974 TTTAGAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 18
0.67 0.00 0.33
Matches are distributed among these distances:
8 3 0.08
9 3 0.08
10 2 0.06
11 6 0.17
12 7 0.19
13 4 0.11
14 11 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATATTTAAAAAA
Found at i:80056959 original size:20 final size:20
Alignment explanation
Indices: 80056904--80056960 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
80056894 TTATATTATT
*
80056904 AAAAATATATTTAATATTTA
1 AAAAATATATTTAAAATTTA
80056924 AAAAATAATATTTAAAATTTTA
1 AAAAAT-ATATTTAAAA-TTTA
80056946 AAAAATA-ATTTAAAA
1 AAAAATATATTTAAAA
80056961 ATAATATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 14 0.41
21 10 0.29
22 10 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAATATATTTAAAATTTA
Found at i:80056961 original size:33 final size:32
Alignment explanation
Indices: 80056919--80057017 Score: 137
Period size: 33 Copynumber: 3.0 Consensus size: 32
80056909 TATATTTAAT
80056919 ATTTAAAAAATAATATTTAAAATTTTAAAAAATA
1 ATTT-AAAAATAATATTTAAAA-TTTAAAAAATA
80056953 ATTTAAAAATAATATTTAAAATTTAGAAAAATA
1 ATTTAAAAATAATATTTAAAATTTA-AAAAATA
* *
80056986 ATTT-CAAATATTTATTTAAAATTTAAAAAATA
1 ATTTAAAAATA-ATATTTAAAATTTAAAAAATA
80057018 TATATTACAA
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
32 16 0.26
33 41 0.67
34 4 0.07
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (32 bp):
ATTTAAAAATAATATTTAAAATTTAAAAAATA
Found at i:80056980 original size:216 final size:216
Alignment explanation
Indices: 80056588--80057072 Score: 776
Period size: 216 Copynumber: 2.2 Consensus size: 216
80056578 AATTAAAAAA
* * *
80056588 ATTATAAAACAAATTAAAATATACATTTAAAAGATTATAAAACTAATAATAAATTTTGAAAGGTC
1 ATTATAAAAC-ATTTCAAATATACATTTAAAATATTATAAAACTAATAATAAATTTTGAAAGGTC
*
80056653 ATATCTTTAAAATATTTAAATATTTTATATTATTAAAAAATATATTAAATTTTTAAAAAATAATA
65 ATATCTTTAAAATATTTAAATATTTTATATTATTAAAAAATATATTAAATATTTAAAAAATAATA
*
80056718 TTTAAATTTTTAAAAAATAATTTAAAAATAATATTCAAAATTTAGAAAAATAATTTAAAATACAT
130 TTTAAAATTTTAAAAAATAATTTAAAAATAATATTCAAAATTTAGAAAAATAATTTAAAAT--AT
80056783 ATATTTAAAAATTAAAAAATATAT
193 ATATTTAAAAATTAAAAAATATAT
80056807 ATTATAAAACATTTCAAATATACATTTAAAATATTATAAAACTAATAATAAA-TTTGAAAGGTCA
1 ATTATAAAACATTTCAAATATACATTTAAAATATTATAAAACTAATAATAAATTTTGAAAGGTCA
*
80056871 TATCTTTAAAATATTTAAATATTTTATATTATT-AAAAATATATTTAATATTTAAAAAATAATAT
66 TATCTTTAAAATATTTAAATATTTTATATTATTAAAAAATATATTAAATATTTAAAAAATAATAT
* * *
80056935 TTAAAATTTTAAAAAATAATTTAAAAATAATATTTAAAATTTAGAAAAATAATTTCAAATATTTA
131 TTAAAATTTTAAAAAATAATTTAAAAATAATATTCAAAATTTAGAAAAATAATTTAAAATATATA
*
80057000 TTTAAAATTTAAAAAATATAT
196 TTTAAAAATTAAAAAATATAT
* * * * * * *
80057021 ATTACAAAAAATTTCAAATATACATTTCAAGTTTTTTAAAATTAATAATAAA
1 ATTATAAAACATTTCAAATATACATTTAAAATATTATAAAACTAATAATAAA
80057073 AAATAAAATA
Statistics
Matches: 249, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
214 69 0.28
216 86 0.35
217 45 0.18
218 39 0.16
219 10 0.04
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (216 bp):
ATTATAAAACATTTCAAATATACATTTAAAATATTATAAAACTAATAATAAATTTTGAAAGGTCA
TATCTTTAAAATATTTAAATATTTTATATTATTAAAAAATATATTAAATATTTAAAAAATAATAT
TTAAAATTTTAAAAAATAATTTAAAAATAATATTCAAAATTTAGAAAAATAATTTAAAATATATA
TTTAAAAATTAAAAAATATAT
Found at i:80056998 original size:22 final size:22
Alignment explanation
Indices: 80056957--80056999 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
80056947 AAAATAATTT
*
80056957 AAAAATAATATTTAAAATTTAG
1 AAAAATAATATTCAAAATTTAG
80056979 AAAAATAAT-TTCAAATATTTA
1 AAAAATAATATTCAAA-ATTTA
80057000 TTTAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AAAAATAATATTCAAAATTTAG
Found at i:80060674 original size:3 final size:3
Alignment explanation
Indices: 80060666--80060719 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
80060656 AAGGGCCCAA
* * * * *
80060666 ATT ATT ATT ATC ATT ACT ACT ACT ATT ATT ATT AAAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
80060712 ATT ATT AT
1 ATT ATT AT
80060720 CTTTTTTTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
3 42 0.95
4 2 0.05
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:80061897 original size:40 final size:40
Alignment explanation
Indices: 80061853--80061988 Score: 164
Period size: 40 Copynumber: 3.4 Consensus size: 40
80061843 TGTTTTAACA
* * * ** *
80061853 AAAACGCCACTAAAAATAGAGTAATAGCGGCTTTTTTGTT
1 AAAACGCCGCTAAAAATAGAGCATTAGCGGCGCTTTTGAT
* *
80061893 AAAACGTCGCTAAAAATATAGCATTAGCGGCGCTTTTGAT
1 AAAACGCCGCTAAAAATAGAGCATTAGCGGCGCTTTTGAT
** *
80061933 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAA-AATAGAGCATTAGCGGCGCTTTTGAT
80061974 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
80061989 GTCATATAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 46 0.56
41 36 0.44
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATAGAGCATTAGCGGCGCTTTTGAT
Found at i:80061969 original size:41 final size:40
Alignment explanation
Indices: 80061822--80061988 Score: 156
Period size: 40 Copynumber: 4.1 Consensus size: 40
80061812 GCAAAAATTG
* * * * *
80061822 TAAAACACAGAGCAATAGCGGTG-TTTTAACAAAAACGCCAC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTTGA-TAAAACGCCGC
* * * ** * *
80061863 TAAAAATAGAGTAATAGCGGCTTTTTTGTTAAAACGTCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTGATAAAACGCCGC
* *
80061903 TAAAAATATAGCATTAGCGGCGCTTTTGATAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTGATAAAACGCCGC
* *
80061943 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAA-AACAGAGCATTAGCGGCGCTTTTGATAAAACGCCGC
80061984 TAAAA
1 TAAAA
80061989 GTCATATAGT
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 59 0.57
41 45 0.43
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGATAAAACGCCGC
Found at i:80063230 original size:8 final size:8
Alignment explanation
Indices: 80063219--80063253 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
80063209 ATTAAAATTT
80063219 AAAAAT-A
1 AAAAATAA
80063226 AAAAATAA
1 AAAAATAA
80063234 AAAAATAA
1 AAAAATAA
80063242 AAAAATAA
1 AAAAATAA
80063250 AAAA
1 AAAA
80063254 TTTAATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:80063245 original size:7 final size:7
Alignment explanation
Indices: 80063204--80063254 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
80063194 AAAATCTTCA
80063204 AAAAAAT
1 AAAAAAT
* *
80063211 TAAAATT
1 AAAAAAT
*
80063218 TAAAAAT
1 AAAAAAT
80063225 AAAAAAT
1 AAAAAAT
80063232 AAAAAAAT
1 -AAAAAAT
80063240 AAAAAAAT
1 -AAAAAAT
80063248 AAAAAAT
1 AAAAAAT
80063255 TTAATATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
7 24 0.62
8 15 0.38
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
AAAAAAT
Found at i:80063263 original size:7 final size:7
Alignment explanation
Indices: 80063253--80063284 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
80063243 AAAATAAAAA
80063253 ATTTAAT
1 ATTTAAT
80063260 ATTTAAT
1 ATTTAAT
80063267 ATTTAAT
1 ATTTAAT
80063274 ATTTAAT
1 ATTTAAT
80063281 ATTT
1 ATTT
80063285 TAGTCCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:80066227 original size:15 final size:16
Alignment explanation
Indices: 80066207--80066237 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
80066197 GTTTTTATCT
80066207 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
80066222 TATATATGATCTAAAA
1 TATATATGATCTAAAA
80066238 GCAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:80068846 original size:43 final size:43
Alignment explanation
Indices: 80068781--80068899 Score: 166
Period size: 43 Copynumber: 2.8 Consensus size: 43
80068771 GATCATTATT
* * * *
80068781 TTTAGCGGCGTTTGTGAGAAAAGTACCGCTAAAGTTTATGATC
1 TTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTTATGATC
* *
80068824 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTTATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTTATGATC
* *
80068867 TTTAGCGGCGTTTGCGAAAAAAGCGCCACTAAA
1 TTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAA
80068900 ACTCCTGGTT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCACCGCTAAAGGTTATGATC
Found at i:80068914 original size:43 final size:43
Alignment explanation
Indices: 80068781--80068922 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 43
80068771 GATCATTATT
* * ** * ** * *
80068781 TTTAGCGGCGTTTGTGAGAAAAGTACCGCTAAAGTTTATGATC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCACTAAAACTCATGGTC
* ** *
80068824 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTTATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCACTAAAACTCATGGTC
* *
80068867 TTTAGCGGCGTTTGCGAAAAAAGCGCCACTAAAACTCCTGGTT
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCACTAAAACTCATGGTC
*
80068910 TTTAGCGACGTTT
1 TTTAGCGGCGTTT
80068923 TTTTAAAAGC
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCACTAAAACTCATGGTC
Found at i:80077048 original size:17 final size:17
Alignment explanation
Indices: 80077022--80077055 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80077012 TAGTTTAGTA
*
80077022 TTATACATGAAATTGAT
1 TTATACATGAAAATGAT
*
80077039 TTATATATGAAAATGAT
1 TTATACATGAAAATGAT
80077056 GATTTGATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (17 bp):
TTATACATGAAAATGAT
Found at i:80079368 original size:16 final size:16
Alignment explanation
Indices: 80079347--80079378 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80079337 AATGCTAGTA
80079347 GTATATATTTATATAT
1 GTATATATTTATATAT
*
80079363 GTATATATTTTTATAT
1 GTATATATTTATATAT
80079379 ATGTTAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTATATATTTATATAT
Found at i:80079375 original size:18 final size:18
Alignment explanation
Indices: 80079348--80079382 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80079338 ATGCTAGTAG
80079348 TATATATTTATATATGTA
1 TATATATTTATATATGTA
*
80079366 TATATTTTTATATATGT
1 TATATATTTATATATGT
80079383 TAATGTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TATATATTTATATATGTA
Found at i:80081990 original size:23 final size:23
Alignment explanation
Indices: 80081922--80081999 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
80081912 TTTGAATTTT
*
80081922 TAAATTTAAGTTTTTTAATAAAAATA
1 TAAATTTAA-TTTTTT--TAAAATTA
* * * * *
80081948 TGAATTTAAATTTATAAAAATTC
1 TAAATTTAATTTTTTTAAAATTA
80081971 TAAATTTAATTTTTTTAAAA-TA
1 TAAATTTAATTTTTTTAAAATTA
*
80081993 AAAATTT
1 TAAATTT
80082000 GTTTTAGAAT
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
22 7 0.17
23 21 0.52
25 4 0.10
26 8 0.20
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (23 bp):
TAAATTTAATTTTTTTAAAATTA
Found at i:80082486 original size:41 final size:41
Alignment explanation
Indices: 80082429--80082507 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
80082419 TCAAGTTAAC
* * *
80082429 TTCTGCTATGAATGCAATCAGTGATATTATCTATACACGCA
1 TTCTGATATAAATGCAATCAGTAATATTATCTATACACGCA
80082470 TTCTGATATAAATGCAATCAGTAATATTATCTATACAC
1 TTCTGATATAAATGCAATCAGTAATATTATCTATACAC
80082508 ACAAATTTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.35
Consensus pattern (41 bp):
TTCTGATATAAATGCAATCAGTAATATTATCTATACACGCA
Found at i:80088544 original size:39 final size:39
Alignment explanation
Indices: 80088498--80088681 Score: 242
Period size: 39 Copynumber: 4.6 Consensus size: 39
80088488 GCTCTGGTGA
*
80088498 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
80088537 GCTTCAGTCAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
80088576 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
80088615 GCTTCAGTTAAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTC-----AGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* **
80088659 GCTTCAGCTAAACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
80088682 AGATCACAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 93 0.72
44 36 0.28
ACGTcount: A:0.12, C:0.26, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:80088679 original size:83 final size:78
Alignment explanation
Indices: 80088510--80088681 Score: 218
Period size: 83 Copynumber: 2.1 Consensus size: 78
80088500 TTCAGTTAGC
** *
80088510 CTTCGGGCTTCCGTTTAGCACTTCTGTGCTTCAGTCAGCCTTTGGGCTTCCGTTTAGCACTTGTG
1 CTTCGGGCTTCCGTTTAGCACTTCTGTGCTTCAGTCAGCCTCCGGGCTTCCGTTTAGCACTTATG
* **
80088575 TGCTTCAGTTAGC
66 TGCTTCAGCTAAA
* * *
80088588 CTTTGGGCTTCCGTTTAGCACTTGTGTGCTTCAGTTAAGTTAGCCTCCGGGCTTCCGTTTAGCAC
1 CTTCGGGCTTCCGTTTAGCACTTCTGTGCTTC-----AGTCAGCCTCCGGGCTTCCGTTTAGCAC
80088653 TTATGTGCTTCAGCTAAA
61 TTATGTGCTTCAGCTAAA
80088671 CTTCGGGCTTC
1 CTTCGGGCTTC
80088682 AGATCACAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 30 0.38
83 49 0.62
ACGTcount: A:0.12, C:0.26, G:0.24, T:0.38
Consensus pattern (78 bp):
CTTCGGGCTTCCGTTTAGCACTTCTGTGCTTCAGTCAGCCTCCGGGCTTCCGTTTAGCACTTATG
TGCTTCAGCTAAA
Found at i:80091832 original size:20 final size:21
Alignment explanation
Indices: 80091801--80091842 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
80091791 TAACTTTCAA
* *
80091801 AATTTATAATTTTATTAATTT
1 AATTTATAATTTAATAAATTT
80091822 AATTT-TAATTTAATAAATTT
1 AATTTATAATTTAATAAATTT
80091842 A
1 A
80091843 TCAATAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AATTTATAATTTAATAAATTT
Found at i:80094223 original size:89 final size:89
Alignment explanation
Indices: 80094054--80094320 Score: 419
Period size: 89 Copynumber: 3.0 Consensus size: 89
80094044 AGCAAAACCG
* * *
80094054 GAGCCACAACCACCTGGAACAAAACATGATCAAATGATAAAACATATGGCAATGGCATACATCTC
1 GAGCCACATCGACCTAG-ACAAAACATGATCAAATGATAAAACATATGGCAATGGCATACATCTC
80094119 GACATGTAGAAGATCGCATGAGGCA
65 GACATGTAGAAGATCGCATGAGGCA
* *
80094144 GAGCCACATCGACCTAGACAAAACATGGTCAAACGATAAAACATATGGCAATGGCATACATCTCG
1 GAGCCACATCGACCTAGACAAAACATGATCAAATGATAAAACATATGGCAATGGCATACATCTCG
80094209 ACATGTAGAAGATCGCATGAGGCA
66 ACATGTAGAAGATCGCATGAGGCA
* ** *
80094233 GAGCCACATCGACCTAGACAAAACATGATCAAATGAT-AAACATATTGCAATGGCATACGCCTCA
1 GAGCCACATCGACCTAGACAAAACATGATCAAATGATAAAACATATGGCAATGGCATACATCTCG
* *
80094297 ACATGTCGAAGATCGTATGAGGCA
66 ACATGTAGAAGATCGCATGAGGCA
80094321 AAGCATAGAA
Statistics
Matches: 164, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
88 45 0.27
89 105 0.64
90 14 0.09
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (89 bp):
GAGCCACATCGACCTAGACAAAACATGATCAAATGATAAAACATATGGCAATGGCATACATCTCG
ACATGTAGAAGATCGCATGAGGCA
Found at i:80101217 original size:20 final size:20
Alignment explanation
Indices: 80101192--80101244 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
80101182 CCAAGAAATA
* * *
80101192 AGATCCGGATGCTTGTAGTT
1 AGATCCAGATGCTTCTACTT
80101212 AGATCCAGATGCTTCTACTT
1 AGATCCAGATGCTTCTACTT
80101232 AGATCCAGATGCT
1 AGATCCAGATGCT
80101245 CGTACACCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (20 bp):
AGATCCAGATGCTTCTACTT
Found at i:80102141 original size:23 final size:22
Alignment explanation
Indices: 80102112--80102154 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
80102102 GGTTTTGCCA
80102112 ATTTGGGGTTTGGATTGTTTTTT
1 ATTTGGGGTTTGG-TTGTTTTTT
*
80102135 ATTTGGGTTTTGGTTGTTTT
1 ATTTGGGGTTTGGTTGTTTT
80102155 ATGACCAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.07, C:0.00, G:0.30, T:0.63
Consensus pattern (22 bp):
ATTTGGGGTTTGGTTGTTTTTT
Found at i:80102142 original size:22 final size:23
Alignment explanation
Indices: 80102112--80102154 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
80102102 GGTTTTGCCA
80102112 ATTTGGGG-TTTGGATTGTTTTTT
1 ATTTGGGGTTTTGG-TTGTTTTTT
80102135 ATTT-GGGTTTTGGTTGTTTT
1 ATTTGGGGTTTTGGTTGTTTT
80102155 ATGACCAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.07, C:0.00, G:0.30, T:0.63
Consensus pattern (23 bp):
ATTTGGGGTTTTGGTTGTTTTTT
Found at i:80104605 original size:26 final size:26
Alignment explanation
Indices: 80104562--80104642 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 26
80104552 AAAAATATAA
*
80104562 AAAATGATATAAACTTATAAAAACAAT
1 AAAAT-ATATAAAATTATAAAAACAAT
**
80104589 AAAA-ATTATAAAATTATAAAATTAAT
1 AAAATA-TATAAAATTATAAAAACAAT
80104615 AAAATATATTAAAATTTTATAAAAACAA
1 AAAATATA-TAAAA--TTATAAAAACAA
80104643 ATTGAAATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
25 1 0.02
26 23 0.52
27 10 0.23
29 10 0.23
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (26 bp):
AAAATATATAAAATTATAAAAACAAT
Found at i:80104611 original size:16 final size:19
Alignment explanation
Indices: 80104590--80104630 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
80104580 AAAAACAATA
80104590 AAAATT-ATAAAAT-TA-T
1 AAAATTAATAAAATATATT
80104606 AAAATTAATAAAATATATT
1 AAAATTAATAAAATATATT
80104625 AAAATT
1 AAAATT
80104631 TTATAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 2 0.09
19 7 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTAATAAAATATATT
Found at i:80104616 original size:9 final size:8
Alignment explanation
Indices: 80104590--80104630 Score: 55
Period size: 8 Copynumber: 4.8 Consensus size: 8
80104580 AAAAACAATA
80104590 AAAATTAT
1 AAAATTAT
80104598 AAAATTAT
1 AAAATTAT
80104606 AAAATTAAT
1 AAAATT-AT
80104615 AAAATATATT
1 AAAAT-TA-T
80104625 AAAATT
1 AAAATT
80104631 TTATAAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 14 0.47
9 9 0.30
10 7 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
AAAATTAT
Found at i:80104637 original size:10 final size:9
Alignment explanation
Indices: 80104587--80104638 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
80104577 TATAAAAACA
*
80104587 ATAAAAATT
1 ATAAAATTT
80104596 ATAAAA-TT
1 ATAAAATTT
*
80104604 ATAAAATTA
1 ATAAAATTT
*
80104613 ATAAAATAT
1 ATAAAATTT
80104622 ATTAAAATTTT
1 A-TAAAA-TTT
80104633 ATAAAA
1 ATAAAA
80104639 ACAAATTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 8 0.22
9 15 0.42
10 10 0.28
11 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
ATAAAATTT
Found at i:80104706 original size:9 final size:9
Alignment explanation
Indices: 80104551--80104618 Score: 52
Period size: 9 Copynumber: 7.6 Consensus size: 9
80104541 ATTGGATATT
80104551 TAAAAA-TA
1 TAAAAATTA
*
80104559 TAAAAAATGA
1 T-AAAAATTA
*
80104569 TATAAACTTA
1 TA-AAAATTA
**
80104579 TAAAAACAA
1 TAAAAATTA
80104588 TAAAAATTA
1 TAAAAATTA
80104597 T-AAAATTA
1 TAAAAATTA
80104605 T-AAAATTAA
1 TAAAAATT-A
80104614 TAAAA
1 TAAAA
80104619 TATATTAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
8 15 0.32
9 20 0.43
10 12 0.26
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.28
Consensus pattern (9 bp):
TAAAAATTA
Found at i:80105179 original size:23 final size:24
Alignment explanation
Indices: 80105137--80105181 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
80105127 TTTATAAATT
*
80105137 TTTTATAATTTATTATATTTTTCA
1 TTTTATAATATATTATATTTTTCA
80105161 TTTTATAATAT-TTATATTTTT
1 TTTTATAATATATTATATTTTT
80105182 ATAAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTATAATATATTATATTTTTCA
Found at i:80105181 original size:17 final size:16
Alignment explanation
Indices: 80105161--80105231 Score: 58
Period size: 16 Copynumber: 4.3 Consensus size: 16
80105151 ATATTTTTCA
80105161 TTTTATAATATTTATAT
1 TTTTATAA-ATTTATAT
*
80105178 TTTTATAAATTTATAA
1 TTTTATAAATTTATAT
*
80105194 GTTTATAACAATTTTAATAT
1 TTTTAT-A-AA-TTT-ATAT
80105214 TTTTAT---TTTATAT
1 TTTTATAAATTTATAT
80105227 TTTTA
1 TTTTA
80105232 ATGATTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
13 9 0.20
14 3 0.07
16 12 0.26
17 9 0.20
18 2 0.04
19 3 0.07
20 8 0.17
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (16 bp):
TTTTATAAATTTATAT
Found at i:80106640 original size:14 final size:14
Alignment explanation
Indices: 80106621--80106656 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
80106611 TATGTCGATT
80106621 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
* *
80106635 AAAAAGAGAGAAAA
1 AAAAAGAAAAAAAA
80106649 AAAAAGAA
1 AAAAAGAA
80106657 GGGGAAAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAAA
Found at i:80120061 original size:21 final size:21
Alignment explanation
Indices: 80120035--80120108 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
80120025 AATTTATAAT
80120035 TTATTTATGACACTTTTAAAA
1 TTATTTATGACACTTTTAAAA
* *** *
80120056 TTATTTATAATGATAAAAATTATAAT
1 TTA-TT-T-ATGA-CACTTTTA-AAA
80120082 TTATTTATGACACTTTTAAAA
1 TTATTTATGACACTTTTAAAA
80120103 TTATTT
1 TTATTT
80120109 TTCGTATTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
21 11 0.29
22 6 0.16
23 5 0.13
24 5 0.13
25 6 0.16
26 5 0.13
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (21 bp):
TTATTTATGACACTTTTAAAA
Found at i:80120065 original size:47 final size:47
Alignment explanation
Indices: 80120014--80120108 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
80120004 TATAAGTTAG
*
80120014 TATAATGATAAAATTTATAATTTATTTATGACACTTTTAAAATTATT
1 TATAATGATAAAAATTATAATTTATTTATGACACTTTTAAAATTATT
80120061 TATAATGATAAAAATTATAATTTATTTATGACACTTTTAAAATTATT
1 TATAATGATAAAAATTATAATTTATTTATGACACTTTTAAAATTATT
80120108 T
1 T
80120109 TTCGTATTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (47 bp):
TATAATGATAAAAATTATAATTTATTTATGACACTTTTAAAATTATT
Found at i:80121263 original size:25 final size:25
Alignment explanation
Indices: 80121209--80121263 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
80121199 ACAAAAATAA
* * *
80121209 AATATTTTTTAAAAATTTCAAATTT
1 AATATTTTTAAAAAATTTCAAAATG
*
80121234 TATATTTTTAAAAAA-TTCTAAAATG
1 AATATTTTTAAAAAATTTC-AAAATG
80121259 AATAT
1 AATAT
80121264 AAAAAAGTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (25 bp):
AATATTTTTAAAAAATTTCAAAATG
Found at i:80131641 original size:32 final size:32
Alignment explanation
Indices: 80131598--80131674 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
80131588 CAAAATAAAT
** *
80131598 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
80131630 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
80131662 GATGAAAAGTTAC
1 TATGAAAAGTTAC
80131675 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:80131950 original size:21 final size:21
Alignment explanation
Indices: 80131912--80131951 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80131902 CTTTGTTTTA
* **
80131912 TTTCTCCAAATTTTTATCAAT
1 TTTCTACAAATTGGTATCAAT
80131933 TTTCTACAAATTGGTATCA
1 TTTCTACAAATTGGTATCA
80131952 GAGCCAGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.17, G:0.05, T:0.47
Consensus pattern (21 bp):
TTTCTACAAATTGGTATCAAT
Found at i:80136146 original size:32 final size:32
Alignment explanation
Indices: 80136103--80136179 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
80136093 CAAAATAAAT
** *
80136103 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
80136135 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
80136167 GATGAAAAGTTAC
1 TATGAAAAGTTAC
80136180 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:80136418 original size:12 final size:12
Alignment explanation
Indices: 80136384--80136410 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80136374 TATTTCTCTT
80136384 TTTATTATATTC
1 TTTATTATATTC
80136396 TTTATTATATTC
1 TTTATTATATTC
80136408 TTT
1 TTT
80136411 GTTTTATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTATTATATTC
Found at i:80137682 original size:15 final size:15
Alignment explanation
Indices: 80137664--80137694 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80137654 ACACAAATAA
80137664 ATAAAAAAACAACTG
1 ATAAAAAAACAACTG
*
80137679 ATAAAAGAACAACTG
1 ATAAAAAAACAACTG
80137694 A
1 A
80137695 AAACAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ATAAAAAAACAACTG
Found at i:80137933 original size:21 final size:21
Alignment explanation
Indices: 80137909--80137948 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
80137899 CCCATTTTAT
80137909 GTATAAAACCTCAATAGTATG
1 GTATAAAACCTCAATAGTATG
*
80137930 GTATGAAACCTCAATAGTA
1 GTATAAAACCTCAATAGTA
80137949 CGAAAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (21 bp):
GTATAAAACCTCAATAGTATG
Found at i:80140005 original size:19 final size:19
Alignment explanation
Indices: 80139963--80140029 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
80139953 ATATTAAAAA
*
80139963 ATAAAAATTGATATAAAT-TT
1 ATAAATATT-ATA-AAATATT
80139983 ATAAATATTATAAAATATT
1 ATAAATATTATAAAATATT
***
80140002 ATAAGCGTTATAAAAATATT
1 ATAAATATTAT-AAAATATT
*
80140022 AAAAATAT
1 ATAAATAT
80140030 AAGAAATCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
18 4 0.11
19 13 0.35
20 20 0.54
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (19 bp):
ATAAATATTATAAAATATT
Found at i:80140656 original size:19 final size:19
Alignment explanation
Indices: 80140557--80140656 Score: 55
Period size: 18 Copynumber: 5.3 Consensus size: 19
80140547 TAATTTTAAT
*
80140557 TTTTTTACAATTTATTATTA
1 TTTTTTATAATTTATTA-TA
* * **
80140577 TTTTTTAAGAATTCTAATACG
1 TTTTTT-ATAATT-TATTATA
*
80140598 TTTTTT-TAATTTA-GATA
1 TTTTTTATAATTTATTATA
** *
80140615 TTTTAAATAAGTT-TTAT-
1 TTTTTTATAATTTATTATA
80140632 TGTTTTTATAATTTATTATA
1 T-TTTTTATAATTTATTATA
80140652 TTTTT
1 TTTTT
80140657 ACATTTTGAT
Statistics
Matches: 58, Mismatches: 15, Indels: 15
0.66 0.17 0.17
Matches are distributed among these distances:
17 6 0.10
18 18 0.31
19 12 0.21
20 7 0.12
21 11 0.19
22 4 0.07
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTTTATAATTTATTATA
Found at i:80146349 original size:39 final size:39
Alignment explanation
Indices: 80146295--80146374 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
80146285 ACTTCCTTAT
*
80146295 CCGTGAAAACTATATAAAATCTCGATTTTTCTAGTTAAG
1 CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG
80146334 CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG
1 CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG
80146373 CC
1 CC
80146375 AAATTTCATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (39 bp):
CCGTGAAAACTATATAAAATATCGATTTTTCTAGTTAAG
Found at i:80149263 original size:29 final size:29
Alignment explanation
Indices: 80149229--80149287 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
80149219 AAAATTGAAT
80149229 GATTACAATGTAAATTTACTCATAATTAC
1 GATTACAATGTAAATTTACTCATAATTAC
80149258 GATTACAATGTAAATTTACTCATAATTAC
1 GATTACAATGTAAATTTACTCATAATTAC
80149287 G
1 G
80149288 GGTGTAGTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (29 bp):
GATTACAATGTAAATTTACTCATAATTAC
Found at i:80149429 original size:19 final size:19
Alignment explanation
Indices: 80149405--80149442 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80149395 AGTACATTGT
80149405 GTATTTTATACTCGAACCC
1 GTATTTTATACTCGAACCC
80149424 GTATTTTATACTCGAACCC
1 GTATTTTATACTCGAACCC
80149443 TCCACTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (19 bp):
GTATTTTATACTCGAACCC
Found at i:80154666 original size:30 final size:31
Alignment explanation
Indices: 80154630--80154689 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
80154620 TTATATATAT
* *
80154630 AAATTTTGATTTTATGTAATT-TTATGCATG
1 AAATTTTAATTTGATGTAATTCTTATGCATG
* *
80154660 AAATTTTAATTTGATTTAATTCTTTTGCAT
1 AAATTTTAATTTGATGTAATTCTTATGCAT
80154690 TATTAACACA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.30, C:0.05, G:0.10, T:0.55
Consensus pattern (31 bp):
AAATTTTAATTTGATGTAATTCTTATGCATG
Done.