Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 25 of 253
Found at i:6933570 original size:25 final size:25
Alignment explanation
Indices: 6933518--6933567 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
6933508 ATATAATACG
* *
6933518 GTATTAAAATACATACATCATATAA
1 GTATTAAAATACATACATAAGATAA
*
6933543 GTATTAAAAATATATACATAAGATA
1 GTATT-AAAATACATACATAAGATA
6933568 GTACGAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (25 bp):
GTATTAAAATACATACATAAGATAA
Found at i:6933651 original size:25 final size:25
Alignment explanation
Indices: 6933623--6933703 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
6933613 AAAAAAAATC
*
6933623 TATGTAATATAGTATTGAAAATCTA
1 TATGTAATATAGTATTGAAAATATA
* * * *
6933648 TATGCAATATGGTATTAAAAGGATAGA
1 TATGTAATATAGTATTGAAA--ATATA
*
6933675 TATATAATATAGTA-TGAAAA-ATA
1 TATGTAATATAGTATTGAAAATATA
6933698 TATGTA
1 TATGTA
6933704 CATGAGATAA
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
23 7 0.16
24 1 0.02
25 17 0.40
26 4 0.09
27 14 0.33
ACGTcount: A:0.47, C:0.02, G:0.15, T:0.36
Consensus pattern (25 bp):
TATGTAATATAGTATTGAAAATATA
Found at i:6934465 original size:15 final size:14
Alignment explanation
Indices: 6934420--6934468 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
6934410 ATATACAAGT
6934420 ATAATAATAAA-AA
1 ATAATAATAAATAA
* *
6934433 ATAATAAT-AGTGA
1 ATAATAATAAATAA
6934446 A-AATAATAAATATA
1 ATAATAATAAATA-A
6934460 ATAATAATA
1 ATAATAATA
6934469 GAAACGATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 7 0.25
13 12 0.43
14 2 0.07
15 7 0.25
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (14 bp):
ATAATAATAAATAA
Found at i:6934649 original size:3 final size:3
Alignment explanation
Indices: 6934635--6934698 Score: 65
Period size: 3 Copynumber: 20.7 Consensus size: 3
6934625 AAATATACTC
* * *
6934635 TAA TATA TAA TAA TAA TAA TAA TAG TAA TAA TAG TAA TAA TAT TAGA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* *
6934682 AAA AAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
6934699 TTTAATAAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
3 47 0.92
4 4 0.08
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6950315 original size:78 final size:78
Alignment explanation
Indices: 6950223--6950379 Score: 305
Period size: 78 Copynumber: 2.0 Consensus size: 78
6950213 ATGCGAATTT
*
6950223 TAGAGTCCCATACCCATACCTAACTCGAATATCACTCCCAACTTAAATATTATTGGAAGAACTTT
1 TAGAGTCCCATACCCATACCCAACTCGAATATCACTCCCAACTTAAATATTATTGGAAGAACTTT
6950288 ACCTGAATATCAC
66 ACCTGAATATCAC
6950301 TAGAGTCCCATACCCATACCCAACTCGAATATCACTCCCAACTTAAATATTATTGGAAGAACTTT
1 TAGAGTCCCATACCCATACCCAACTCGAATATCACTCCCAACTTAAATATTATTGGAAGAACTTT
6950366 ACCTGAATATCAC
66 ACCTGAATATCAC
6950379 T
1 T
6950380 CCCAACTCGA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.28
Consensus pattern (78 bp):
TAGAGTCCCATACCCATACCCAACTCGAATATCACTCCCAACTTAAATATTATTGGAAGAACTTT
ACCTGAATATCAC
Found at i:6951826 original size:16 final size:16
Alignment explanation
Indices: 6951805--6951837 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6951795 AAGGCAAGTG
6951805 ATCCATAATCATGTTT
1 ATCCATAATCATGTTT
6951821 ATCCATAATCATGTTT
1 ATCCATAATCATGTTT
6951837 A
1 A
6951838 CTTTCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.42
Consensus pattern (16 bp):
ATCCATAATCATGTTT
Found at i:6953818 original size:40 final size:40
Alignment explanation
Indices: 6953763--6954012 Score: 161
Period size: 41 Copynumber: 6.1 Consensus size: 40
6953753 GCAAAAATTG
* * * *
6953763 TAAAACACATAGCAATAGCGGCGTTTTACCAAAAACACCAC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTATCAAAAACGCCGC
*
6953804 TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTA-TCAAAAACGCCGC
* * * *
6953845 AAAAAATAGAGCATTAGCGGCGCTTTTTTC-AAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTATCAAAAACGCCGC
* * ** *
6953885 TAAAAACCAGAGCATTTGCGGCGGTTTT-GGAAAAACGCTGC
1 TAAAAA-CAGAGCAATAGCGGC-GTTTTATCAAAAACGCCGC
* * * * * *
6953926 TGACAACCAGAGCATTAGCAGCGCTTTTGGT--AAAACGCTGC
1 T-AAAAACAGAGCAATAGCGGCG-TTTT-ATCAAAAACGCCGC
* *
6953967 TAAAAACCAGAGCATTAGCGGCGCTTTTGGT--AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTT-ATCAAAAACGCCGC
6954008 TAAAA
1 TAAAA
6954013 GTCATATAAC
Statistics
Matches: 174, Mismatches: 25, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
40 40 0.23
41 126 0.72
42 8 0.05
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTATCAAAAACGCCGC
Found at i:6953890 original size:41 final size:41
Alignment explanation
Indices: 6953794--6954012 Score: 248
Period size: 41 Copynumber: 5.4 Consensus size: 41
6953784 CGTTTTACCA
* * * *
6953794 AAAACACCACTAAAAA-CAGAGCAATAGCGGCG-TTTTAGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
** *
6953833 AAAAAACGCCGC-AAAAAATAGAGCATTAGCGGCGCTTTT-TT
1 --AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * *
6953874 CAAAACGCCGCTAAAAACCAGAGCATTTGCGGCGGTTTTGGA
1 -AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * * *
6953916 AAAACGCTGCTGACAACCAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
6953957 AAAACGCTGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
6953998 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
6954013 GTCATATAAC
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
40 15 0.10
41 132 0.87
42 4 0.03
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:6954184 original size:7 final size:7
Alignment explanation
Indices: 6954169--6954222 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
6954159 TTAATTATCA
*
6954169 TTATAGT
1 TTATGGT
6954176 TTATGGT
1 TTATGGT
6954183 TTATGGT
1 TTATGGT
* *
6954190 TTAAGAT
1 TTATGGT
*
6954197 ATATGGT
1 TTATGGT
*
6954204 TTAGGGT
1 TTATGGT
*
6954211 TTAAGGT
1 TTATGGT
6954218 TTATG
1 TTATG
6954223 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:6954201 original size:21 final size:21
Alignment explanation
Indices: 6954177--6954261 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
6954167 CATTATAGTT
*
6954177 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
6954198 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
**
6954219 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
6954244 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
6954262 GTTTAGGATT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:6954240 original size:46 final size:46
Alignment explanation
Indices: 6954188--6954276 Score: 160
Period size: 46 Copynumber: 1.9 Consensus size: 46
6954178 ATGGTTTATG
*
6954188 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
*
6954234 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGATTTAACT
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACT
6954277 TGTAGTTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.29, C:0.02, G:0.25, T:0.44
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTATA
Found at i:6954330 original size:21 final size:21
Alignment explanation
Indices: 6954295--6954352 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
6954285 AAGGTTTATG
*
6954295 ATGAATTATGGGTTTAGGGATT
1 ATGATTTA-GGGTTTAGGGATT
*
6954317 ATGATTTAGGGTTTAGGGGTT
1 ATGATTTAGGGTTTAGGGATT
6954338 ATGATTTAGGGTTTA
1 ATGATTTAGGGTTTA
6954353 TGGGTTAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
21 27 0.79
22 7 0.21
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (21 bp):
ATGATTTAGGGTTTAGGGATT
Found at i:6954333 original size:7 final size:7
Alignment explanation
Indices: 6954304--6954430 Score: 89
Period size: 7 Copynumber: 18.1 Consensus size: 7
6954294 GATGAATTAT
6954304 GGGTTTA
1 GGGTTTA
*
6954311 GGGATTA
1 GGGTTTA
* *
6954318 TGATTTA
1 GGGTTTA
6954325 GGGTTTA
1 GGGTTTA
*
6954332 GGGGTTA
1 GGGTTTA
* *
6954339 TGATTTA
1 GGGTTTA
6954346 GGGTTTA
1 GGGTTTA
6954353 TGGG-TTA
1 -GGGTTTA
*
6954360 AGG-TT-
1 GGGTTTA
6954365 GGAGTTTA
1 GG-GTTTA
* *
6954373 AGGTGTAA
1 GGGT-TTA
*
6954381 GGGTTTG
1 GGGTTTA
*
6954388 GGGTTAA
1 GGGTTTA
*
6954395 GGGTTAA
1 GGGTTTA
6954402 GGGTTTA
1 GGGTTTA
*
6954409 GAGTTTA
1 GGGTTTA
6954416 GGGTTTA
1 GGGTTTA
6954423 GGGTTTA
1 GGGTTTA
6954430 G
1 G
6954431 TGGCGTTTTT
Statistics
Matches: 91, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
5 1 0.01
6 5 0.05
7 76 0.84
8 9 0.10
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:6954726 original size:14 final size:14
Alignment explanation
Indices: 6954703--6954747 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
6954693 TTAATTATCA
6954703 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
6954717 TTAT-GATTTAGGGT
1 TTATAG-TTTAGGGT
*
6954731 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
6954745 TTA
1 TTA
6954748 AGGTGTAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:6956381 original size:25 final size:25
Alignment explanation
Indices: 6956347--6956407 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
6956337 TCGTTGTTCG
6956347 CCGTCGTCTCTTCTGCGTCCCTTCA
1 CCGTCGTCTCTTCTGCGTCCCTTCA
*
6956372 CCGTCGTCTCTTCTGCGTCCCTTCG
1 CCGTCGTCTCTTCTGCGTCCCTTCA
6956397 CCGTCGCTCTC
1 CCGTCG-TCTC
6956408 CGCTTCCGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 30 0.88
26 4 0.12
ACGTcount: A:0.02, C:0.46, G:0.18, T:0.34
Consensus pattern (25 bp):
CCGTCGTCTCTTCTGCGTCCCTTCA
Found at i:6959585 original size:9 final size:9
Alignment explanation
Indices: 6959568--6959689 Score: 118
Period size: 9 Copynumber: 12.9 Consensus size: 9
6959558 CATTACTTCA
*
6959568 ATAAATTAC
1 ATAACTTAC
6959577 ATAACTTAC
1 ATAACTTAC
* *
6959586 ATAACTCAT
1 ATAACTTAC
6959595 ATAACTTAC
1 ATAACTTAC
*
6959604 ATAATTTAC
1 ATAACTTAC
6959613 ATAACAACTTAC
1 AT---AACTTAC
*
6959625 ATAATTTAC
1 ATAACTTAC
6959634 ATAACTTAC
1 ATAACTTAC
*
6959643 ATAATTTAC
1 ATAACTTAC
*
6959652 ATAACTCAC
1 ATAACTTAC
*
6959661 ATAACGTAC
1 ATAACTTAC
6959670 ATAACAACTTAC
1 AT---AACTTAC
6959682 ATAACTTA
1 ATAACTTA
6959690 ACTAATACAT
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
9 76 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:6959626 original size:39 final size:39
Alignment explanation
Indices: 6959579--6959656 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
6959569 TAAATTACAT
*
6959579 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
* *
6959618 AACTTACATAATTTACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
6959657 TCACATAACG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:6959634 original size:48 final size:48
Alignment explanation
Indices: 6959573--6959687 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 48
6959563 CTTCAATAAA
* * *
6959573 TTACATAACTTACATAACTCATATAACTTACATAATTTACATAACAAC
1 TTACATAACTTACATAACTCACATAACTTACATAACTCACATAACAAC
* * * *
6959621 TTACATAATTTACATAACTTACATAATTTACATAACTCACATAACGTAC
1 TTACATAACTTACATAACTCACATAACTTACATAACTCACATAAC-AAC
* *
6959670 ATA-ACAACTTACATAACT
1 TTACATAACTTACATAACT
6959688 TAACTAATAC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (48 bp):
TTACATAACTTACATAACTCACATAACTTACATAACTCACATAACAAC
Found at i:6959642 original size:57 final size:57
Alignment explanation
Indices: 6959568--6959685 Score: 173
Period size: 57 Copynumber: 2.1 Consensus size: 57
6959558 CATTACTTCA
* * **
6959568 ATAAATTACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTAC
1 ATAAATTACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTAC
* * *
6959625 ATAATTTACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTAC
1 ATAAATTACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTAC
6959682 ATAA
1 ATAA
6959686 CTTAACTAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.32
Consensus pattern (57 bp):
ATAAATTACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTAC
Found at i:6964594 original size:18 final size:18
Alignment explanation
Indices: 6964573--6964627 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
6964563 ATTAATAACT
6964573 TTCTATTATTAAATAATA
1 TTCTATTATTAAATAATA
6964591 TTC--TTATT-AATAACT-
1 TTCTATTATTAAATAA-TA
6964606 TTCTATTATTAAATAATA
1 TTCTATTATTAAATAATA
6964624 TTCT
1 TTCT
6964628 TACTACTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 8 0.25
16 6 0.19
17 6 0.19
18 12 0.38
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (18 bp):
TTCTATTATTAAATAATA
Found at i:6964599 original size:33 final size:33
Alignment explanation
Indices: 6964562--6964629 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
6964552 TTCTTTCAAA
6964562 TATTAATAACTTTCTATTATTAAATAATATTCT
1 TATTAATAACTTTCTATTATTAAATAATATTCT
6964595 TATTAATAACTTTCTATTATTAAATAATATTCT
1 TATTAATAACTTTCTATTATTAAATAATATTCT
6964628 TA
1 TA
6964630 CTACTATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (33 bp):
TATTAATAACTTTCTATTATTAAATAATATTCT
Found at i:6965250 original size:21 final size:21
Alignment explanation
Indices: 6965224--6965274 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
6965214 ACAACTTAGA
* *
6965224 GCAGAGGCAGTAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* *
6965245 GCAGAGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
6965266 GCAGAGGCA
1 GCAGAGGCA
6965275 CGGGCGATGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.49, T:0.04
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:6965696 original size:43 final size:42
Alignment explanation
Indices: 6965649--6965747 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 42
6965639 TCTGCCAAAA
*
6965649 TTAGCGATGTTTGT-AAAAAAAGCGCCGCTAAAAGCCTTGACCT
1 TTAGCGGTGTTT-TCAAAAAAA-CGCCGCTAAAAGCCTTGACCT
* ** * *
6965692 TTAGCGGCGCTTTTCTCACAAATGCCGCTAAAAGCCTTGACCT
1 TTAGCGGTG-TTTTCAAAAAAACGCCGCTAAAAGCCTTGACCT
6965735 TTAGCGGTGTTTT
1 TTAGCGGTGTTTT
6965748 TTCCAATAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 4 0.09
43 36 0.77
44 7 0.15
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (42 bp):
TTAGCGGTGTTTTCAAAAAAACGCCGCTAAAAGCCTTGACCT
Found at i:6970806 original size:61 final size:60
Alignment explanation
Indices: 6970717--6970837 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 60
6970707 TAACGTTTTG
* * * *
6970717 ACATTCAAGCATGCAAATCTAACTATTTCCCCCTTTTAGGATTTCTTAAAATTTGTTTCCC
1 ACATTCAAGCATGCAAATCTAACTATTTCCCCCTCTTAGGA-TCCCTAAAATTTATTTCCC
* * *
6970778 ACATTCAAGGATGGAACTCTATAC-ATTTCCCCCTCTTAGGATCCCTAAAATTTATTTCCC
1 ACATTCAAGCATGCAAATCTA-ACTATTTCCCCCTCTTAGGATCCCTAAAATTTATTTCCC
6970838 CTATAAATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 16 0.31
61 34 0.65
62 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.36
Consensus pattern (60 bp):
ACATTCAAGCATGCAAATCTAACTATTTCCCCCTCTTAGGATCCCTAAAATTTATTTCCC
Found at i:6973804 original size:17 final size:16
Alignment explanation
Indices: 6973771--6973802 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6973761 TCAAAAATAA
6973771 ATTTTCTAAAATATTT
1 ATTTTCTAAAATATTT
*
6973787 ATTTTTTAAAATATTT
1 ATTTTCTAAAATATTT
6973803 TAATATATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTCTAAAATATTT
Found at i:6978537 original size:39 final size:39
Alignment explanation
Indices: 6978451--6978603 Score: 245
Period size: 39 Copynumber: 3.9 Consensus size: 39
6978441 ATAAAGTATG
*
6978451 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATT
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATA
6978491 GTTTTAATTAATAATGAAAACAAAATAGTAT-GGGGAATA
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATA
*
6978530 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATA
* *
6978569 GTTTTAATTAATAATAAAACAAAGTAGCATGGGGG
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGG
6978604 GAGTGGAATC
Statistics
Matches: 107, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
38 15 0.14
39 62 0.58
40 30 0.28
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATA
Found at i:6991565 original size:203 final size:204
Alignment explanation
Indices: 6991152--6991710 Score: 948
Period size: 203 Copynumber: 2.8 Consensus size: 204
6991142 AGACACATAG
* *
6991152 CAGATGATTTTACTGAAGTAGATCCAAGATGGTTTGGCATCC-T-TGTTTACAAGGAACAAATCG
1 CAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCG
6991215 AAGACATAGCTGATTTGGC-TTCAC-TGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
66 AAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
* * * *
6991278 TGTATCGTCAGAGAACGAATCAAAGTTTTGCATCTTCACTTTGATAGAGAGCAGACACATAGCAG
131 TGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATAGAGAGCAGACACA-AGAAA
6991343 ATCTCGCCTT
195 ATCTCGCCTT
*
6991353 CAGATGATTTCACTGAAGCAGATCCAAAATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCG
1 CAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCG
*
6991418 AAGACATAGCTAATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
66 AAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
*
6991483 TGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACAC-AGAAAA
131 TGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATAGAGAGCAGACACAAGAAAA
*
6991547 TCTCGCGTT
196 TCTCGCCTT
6991556 CAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCG
1 CAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCG
*
6991621 AAGACATAGCTGATTTGACTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
66 AAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
* * *
6991686 TGTATCGTTAGGGAACAAATCGAAG
131 TGTATCGTCAGAGAACGAATCGAAG
6991711 AAATAGATTT
Statistics
Matches: 338, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
201 39 0.12
202 1 0.00
203 199 0.59
204 5 0.01
205 94 0.28
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (204 bp):
CAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAATCG
AAGACATAGCTGATTTGGCTTTCACGTGATTACGAGAAAGCAAATCTAAGATGATTTGTCGTCTC
TGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATAGAGAGCAGACACAAGAAAA
TCTCGCCTT
Found at i:6993085 original size:39 final size:39
Alignment explanation
Indices: 6992999--6993151 Score: 245
Period size: 39 Copynumber: 3.9 Consensus size: 39
6992989 ATAAAGTATG
*
6992999 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATG
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATA
6993039 GTTTTAATTAATAATGAAAACAAAATAGTAT-GGGGAATA
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATA
*
6993078 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATA
* *
6993117 GTTTTAATTAATAATAAAACAAAGTAGCATGGGGG
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGG
6993152 GAGTGGAATC
Statistics
Matches: 107, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
38 15 0.14
39 62 0.58
40 30 0.28
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.30
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATA
Found at i:6997782 original size:19 final size:19
Alignment explanation
Indices: 6997734--6997775 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
6997724 TATGAGTTTG
6997734 TGCA-CTCATGTGCCAGGA
1 TGCATCTCATGTGCCAGGA
6997752 TGCATCTCATGTGCCAGGA
1 TGCATCTCATGTGCCAGGA
6997771 TGCAT
1 TGCAT
6997776 TTTATGTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (19 bp):
TGCATCTCATGTGCCAGGA
Found at i:6998628 original size:19 final size:19
Alignment explanation
Indices: 6998604--6998665 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
6998594 TTTTGTATAT
6998604 AATTATTAAAAAAACTAAA
1 AATTATTAAAAAAACTAAA
* *
6998623 AATTATTTATAAAA-TAGGAA
1 AATTATTAAAAAAACTA--AA
*
6998643 AATGTATATAAAAAATCTAAA
1 AAT-TAT-TAAAAAAACTAAA
6998664 AA
1 AA
6998666 ATAAAATCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
18 2 0.06
19 12 0.36
20 5 0.15
21 7 0.21
22 5 0.15
23 2 0.06
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (19 bp):
AATTATTAAAAAAACTAAA
Found at i:6998665 original size:21 final size:20
Alignment explanation
Indices: 6998604--6998665 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 20
6998594 TTTTGTATAT
*
6998604 AATTAT-TAAAAAAACTAAA
1 AATTATATAAAAAATCTAAA
* * ***
6998623 AATTATTTATAAAATAGGAA
1 AATTATATAAAAAATCTAAA
6998643 AATGTATATAAAAAATCTAAA
1 AAT-TATATAAAAAATCTAAA
6998664 AA
1 AA
6998666 ATAAAATCTT
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
19 6 0.19
20 11 0.35
21 14 0.45
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (20 bp):
AATTATATAAAAAATCTAAA
Found at i:7011449 original size:130 final size:132
Alignment explanation
Indices: 7011210--7011452 Score: 280
Period size: 130 Copynumber: 1.8 Consensus size: 132
7011200 ACGGGAGATT
* * * *
7011210 GCAACCCAGCACGATAGGGCACTATTCCCCGAACTGCCCAAACATCAAACACTTCTTTCGTTTTA
1 GCAACCCAACACGATAGGGCACGATTCCCCGAAATACCCAAACATCAAACAC-TCTTTCGTTTTA
* * * *
7011275 AAGGGTTTTTAGAAAACGTGGATGAAACTTCAAAGGGATCTTCGATTGCTTAGAATAAATGAAAA
65 AAGGGTTTTTAGAAAACATGGATGAAACCTCAAAGGAATATTCGATTGCTTAGAATAAATGAAAA
7011340 AGC
130 AGC
* * * *
7011343 GCAACCCAACACGATAGGGCACGATT-CTC-AAATATCCAATCATCAAACA-TCTTTTGTTTTGA
1 GCAACCCAACACGATAGGGCACGATTCCCCGAAATACCCAAACATCAAACACTCTTTCGTTTT-A
* * *
7011405 AAGGTTTTTTA-ATAAGCATGGGTGAAAACCT-AAAGGAATATTCGATTG
65 AAGGGTTTTTAGA-AAACATGGATG-AAACCTCAAAGGAATATTCGATTG
7011453 TTTTTGAGCA
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
129 11 0.12
130 34 0.37
131 21 0.23
132 2 0.02
133 24 0.26
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (132 bp):
GCAACCCAACACGATAGGGCACGATTCCCCGAAATACCCAAACATCAAACACTCTTTCGTTTTAA
AGGGTTTTTAGAAAACATGGATGAAACCTCAAAGGAATATTCGATTGCTTAGAATAAATGAAAAA
GC
Found at i:7012032 original size:9 final size:9
Alignment explanation
Indices: 7012018--7012074 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
7012008 AATGACAATG
7012018 ATAATGATA
1 ATAATGATA
7012027 ATAATGATA
1 ATAATGATA
*
7012036 ATAATAATA
1 ATAATGATA
7012045 ATAAT-ATA
1 ATAATGATA
* *
7012053 A-CATAGAAA
1 ATAAT-GATA
7012062 ATAATGATA
1 ATAATGATA
7012071 ATAA
1 ATAA
7012075 AATATGAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
7 2 0.05
8 4 0.10
9 32 0.80
10 2 0.05
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (9 bp):
ATAATGATA
Found at i:7012064 original size:23 final size:22
Alignment explanation
Indices: 7012038--7012101 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
7012028 TAATGATAAT
7012038 AATAATAATAATATAACATA-GAA
1 AATAATAATAATA-AA-ATATGAA
*
7012061 AATAATGATAATAAAATATGAA
1 AATAATAATAATAAAATATGAA
*
7012083 AAAAATAAATAA-AAAATAT
1 AATAAT-AATAATAAAATAT
7012102 ACATACGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.08
22 17 0.47
23 16 0.44
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.25
Consensus pattern (22 bp):
AATAATAATAATAAAATATGAA
Found at i:7012290 original size:11 final size:11
Alignment explanation
Indices: 7012267--7012328 Score: 67
Period size: 11 Copynumber: 5.7 Consensus size: 11
7012257 TATACGTAAA
7012267 AATATA-ATA-
1 AATATATATAT
7012276 AATATATATAT
1 AATATATATAT
*
7012287 AATATATACAT
1 AATATATATAT
7012298 AATATAGTAT-T
1 AATATA-TATAT
*
7012309 AAAAATATATAT
1 -AATATATATAT
7012321 AATATATA
1 AATATATA
7012329 CACATTAGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
9 6 0.14
10 3 0.07
11 27 0.61
12 8 0.18
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (11 bp):
AATATATATAT
Found at i:7012294 original size:34 final size:34
Alignment explanation
Indices: 7012253--7012330 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
7012243 TGATATTAAA
* *
7012253 AATATATACGTAAAAATA-TAATAAATATATATAT
1 AATATATACAT-AAAATAGTAATAAAAATATATAT
* *
7012287 AATATATACATAATATAGTATTAAAAATATATAT
1 AATATATACATAAAATAGTAATAAAAATATATAT
7012321 AATATATACA
1 AATATATACA
7012331 CATTAGAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 5 0.13
34 34 0.87
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (34 bp):
AATATATACATAAAATAGTAATAAAAATATATAT
Found at i:7012417 original size:14 final size:14
Alignment explanation
Indices: 7012382--7012417 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7012372 TACTTCATAA
*
7012382 ATATATACATACAC
1 ATATATATATACAC
*
7012396 ATATATATATATAC
1 ATATATATATACAC
7012410 ATATATAT
1 ATATATAT
7012418 GTTAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATATATATACAC
Found at i:7012592 original size:24 final size:24
Alignment explanation
Indices: 7012525--7012581 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
7012515 TAGTAATTAT
* * * *
7012525 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
7012549 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
7012573 AATAATAAT
1 AATAATAAT
7012582 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:7013292 original size:11 final size:11
Alignment explanation
Indices: 7013276--7013305 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7013266 ATAATAAAAT
7013276 AAAAAAAGAAA
1 AAAAAAAGAAA
7013287 AAAAAAAGAAA
1 AAAAAAAGAAA
7013298 AGAAAAAA
1 A-AAAAAA
7013306 CCTTTAACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:7014257 original size:138 final size:132
Alignment explanation
Indices: 7014074--7014552 Score: 415
Period size: 138 Copynumber: 3.5 Consensus size: 132
7014064 TCCGACCCTA
* * **
7014074 CTGCAACTTCAGAG-GTATAGGACTCGTAATTCGTAGCTTTGATCTGTTCCACTGCAAC-TCTAG
1 CTGCAACTTCAGAGAG-ATAAGA-TTGT-ATT-GTAGCTTCAATCTGTTCCACTGCAACTTC-AG
* * *
7014137 GGAAATAAGATCCATTATCTTCAGCCTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTTTTGA
61 GGAAATAAGATCCA-TATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTTTGA
7014202 TCTGCTCC
125 TCTGCTCC
* *
7014210 CTTGCAACTGCAGAGAGATAAGATTTGTTTATTCGTAGCTTCAATCTGTTCCACTGCATCTTCAG
1 C-TGCAACTTCAGAGAGATAAGA-TTG--TATT-GTAGCTTCAATCTGTTCCACTGCAACTTCAG
** *
7014275 GGAAATAAGATTGGATATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTGGTTT
61 GGAAATAAGA-TCCATATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-T-GTTT
* *
7014340 TAACCTGCTCC
122 TGATCTGCTCC
* * *
7014351 ACTGCAACTTCATG-GAGATAAGA-TG----GTGGCTTAAATCTGCTT-CACTGCAACTTTA-GG
1 -CTGCAACTTCA-GAGAGATAAGATTGTATTGTAGCTTCAATCTG-TTCCACTGCAACTTCAGGG
** ** ** * * *
7014408 AAGGCAAGATTTACCGTCTTC-GATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGTTTTGA
63 AA-ATAAGATCCA-TATCTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTTTGA
*
7014472 TCTGCTCTA
125 TCTGCTC-C
7014481 CTGCAACTTCAGAGAGATAAGATCTGTAATT-TAGCTTCAATCTGTTCCACTGCAACTTCAGGGA
1 CTGCAACTTCAGAGAGATAAGAT-TGT-ATTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGA
7014545 AATAAGAT
64 AATAAGAT
7014553 TTGCTATATT
Statistics
Matches: 279, Mismatches: 38, Indels: 53
0.75 0.10 0.14
Matches are distributed among these distances:
128 1 0.00
129 32 0.11
130 1 0.00
131 10 0.04
132 60 0.22
133 2 0.01
134 2 0.01
135 28 0.10
136 5 0.02
137 19 0.07
138 76 0.27
139 9 0.03
140 1 0.00
141 31 0.11
142 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (132 bp):
CTGCAACTTCAGAGAGATAAGATTGTATTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA
TAAGATCCATATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTTTGATCTGCT
CC
Found at i:7014486 original size:41 final size:41
Alignment explanation
Indices: 7014252--7014552 Score: 163
Period size: 45 Copynumber: 6.8 Consensus size: 41
7014242 TCGTAGCTTC
* * *
7014252 AATCTGTTCCACTGCATCTTCAGGGAAATAAGAT-TGGATATCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-G-T-T-TT
* * *
7014296 CAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTGGTTTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TCT-GTTTT
* * * * *
7014341 AACCTGCTCCACTGCAACTTCATGGAGATAAGATGGTGGCTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-CT-GTTTT
* * * ** * *
7014384 AATCTGCTTCACTGCAACTTTAGGAAGGCAAGATTTACCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-CTGT-TTT
* * *
7014429 GATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTTT
* * *
7014470 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG----TT---TT
* *
7014518 CAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
7014553 TTGCTATATT
Statistics
Matches: 201, Mismatches: 40, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
41 35 0.17
42 4 0.02
43 33 0.16
44 30 0.15
45 62 0.31
46 1 0.00
47 2 0.01
48 5 0.02
49 29 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (41 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTTT
Found at i:7014710 original size:268 final size:270
Alignment explanation
Indices: 7014165--7014713 Score: 679
Period size: 268 Copynumber: 2.0 Consensus size: 270
7014155 CTTCAGCCTG
* * * * *
7014165 CTCCACTACAACTTCAGGGAGATAAGGTTTGTTTTGATCTGCTCCCTTGCAACTGCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTGTTTTGATCTGCTCACTTGCAACTGCAGAGAGATA
* * *
7014230 AGATTTGTTTATTCGTAGCTTCAATCTGTTCCACTGCATCTTCAGGGAAATAAGATTGGATATCT
66 AGATCTGTTAATTC-TAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTGGATATCT
* * * * * *
7014295 TCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTGGTTTTAACCTGCTCCACTGCAACT
130 TCAGTCTACTCCACTGCAACTTCAAGGAAACAAGACTTGTGCTTTTAACCTACTCCACTACAACT
* * * *
7014360 TCATGGAGATAAGATGGTGGCTTAAATCTGCTTCACTGCAACTTTAGGAAGGCAAGATTTACCGT
195 TCATGGAGATAAGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGAAGCCAAGATTCACCGT
7014425 CTTCGATCTGT
260 CTTCGATCTGT
*
7014436 -TCCACTGCAACTTCAGGGAGACAAGATCTGTTTTGATCTGCTCTAC-TGCAACTTCAGAGAGAT
1 CTCCACTGCAACTTCAGGGAGACAAGATCTGTTTTGATCTGCTC-ACTTGCAACTGCAGAGAGAT
*
7014499 AAGATCTG-TAATT-TAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATAT
65 AAGATCTGTTAATTCTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGA-TTG-GATAT
* * * *
7014562 -TTGA-TCTGCTCCATTGCAA-TCTCAAGGAAACAAGA-TT-TGCTATCTTCAGCCTACTCCACT
128 CTTCAGTCTACTCCACTGCAACT-TCAAGGAAACAAGACTTGTGCT-T-TT-AACCTACTCCACT
* * * *
7014622 ACAACTTTA-GAGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGAAGCCTAGAT
189 ACAACTTCATG-GAGATAAGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGAAGCCAAGAT
*
7014686 TCACCGTCTTTGATCT-T
253 TCACCGTCTTCGATCTGT
7014703 CTCCACTGCAA
1 CTCCACTGCAA
7014714 TCTCACGGAA
Statistics
Matches: 240, Mismatches: 29, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
265 3 0.01
266 4 0.02
267 67 0.28
268 95 0.40
269 8 0.03
270 62 0.26
271 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (270 bp):
CTCCACTGCAACTTCAGGGAGACAAGATCTGTTTTGATCTGCTCACTTGCAACTGCAGAGAGATA
AGATCTGTTAATTCTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTGGATATCTT
CAGTCTACTCCACTGCAACTTCAAGGAAACAAGACTTGTGCTTTTAACCTACTCCACTACAACTT
CATGGAGATAAGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGAAGCCAAGATTCACCGTC
TTCGATCTGT
Found at i:7075572 original size:40 final size:40
Alignment explanation
Indices: 7075517--7075663 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
7075507 TCGAGATAAT
* *
7075517 CTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAACCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGG
*
7075557 CTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGG
7075597 CTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAAACCGGG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AACCGGG
*
7075637 CTAAGTCCCGAAGGCATTTGAGCGAGT
1 CTAAGTCCCGAAGGCATTTGTGCGAGT
7075664 AGCTATATCC
Statistics
Matches: 100, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
39 15 0.15
40 76 0.76
41 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGG
Found at i:7083594 original size:40 final size:40
Alignment explanation
Indices: 7083485--7083735 Score: 359
Period size: 40 Copynumber: 6.3 Consensus size: 40
7083475 TATTCGGATG
* * * *
7083485 ATAACCGAGCTAAGTCCCGAAAGCATTTGTGCTAGTGA--
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
7083523 ATAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
7083564 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
7083604 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
7083644 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
7083684 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
7083724 ATATCC-GGCTAA
1 ATAACCGGGCTAA
7083736 ACCCCGAGGG
Statistics
Matches: 195, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
38 4 0.02
39 38 0.19
40 150 0.77
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:7091155 original size:23 final size:23
Alignment explanation
Indices: 7091096--7091175 Score: 103
Period size: 23 Copynumber: 3.6 Consensus size: 23
7091086 TTACTTATAC
*
7091096 TATTGTTGTTATTATTATT-AT-
1 TATTATTGTTATTATTATTAATG
* *
7091117 TCCTGATT-TTATTATTATTAATG
1 T-ATTATTGTTATTATTATTAATG
7091140 TATTATTGTTATTATTATTAATG
1 TATTATTGTTATTATTATTAATG
7091163 TATTATTGTTATT
1 TATTATTGTTATT
7091176 CTTTATTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
21 12 0.24
22 9 0.18
23 29 0.58
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.62
Consensus pattern (23 bp):
TATTATTGTTATTATTATTAATG
Found at i:7091226 original size:3 final size:3
Alignment explanation
Indices: 7090757--7091209 Score: 143
Period size: 3 Copynumber: 146.7 Consensus size: 3
7090747 TTTTATTAAA
* * * **
7090757 TAT TAT TAT TAT CAT T-T CTAA TAT TAT TAT TAT TAT TAT TAC CCT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7090802 TAT TAA TAT TAGT GTAT GT-T T-T TAT TAT ATAT GTGT ATAT ATAT T-T
1 TAT TAT TAT TA-T -TAT -TAT TAT TAT TAT -TAT -TAT -TAT -TAT TAT
* * * *
7090848 ATAT ATAG TAT TAT T-T AAT TAC T-T TAT T-T TAA TAT TAT TAT TA-
1 -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** *
7090891 TGT TAT ATAT ATAT T-T GTAT T-T CAT TAT TAT TGC TAG TAT TAT TAT
1 TAT TAT -TAT -TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7090937 TAT TAT TAA TAT TAGT GTAT GT-T T-T TAT TAT ATAGG TAT ATAT ATAT
1 TAT TAT TAT TAT TA-T -TAT -TAT TAT TAT TAT -TA-T TAT -TAT -TAT
* * * *
7090984 T-T ATAT ATAG TAT TAT TTT TAAT TAC T-T TAT T-T TAA TAT TAT TAT
1 TAT -TAT -TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* * * ** *
7091029 TAC TAT TAT TAT TAT TAT TAT TAT TAT CAC TAT TAT CGT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
7091077 TAT TAAT TTT TACT TA- TAC TAT TGT TGT TAT TAT TAT TAT TCCT GAT
1 TAT T-AT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* *
7091124 T-T TAT TAT TAT TAAT GTAT TAT TGT TAT TAT TAT TAAT GTAT TAT TGT
1 TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT
* *
7091172 TAT TCTT TAT T-T TAT TAT TAC TAT TAT T-T CTAT TAT TA
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TA
7091210 CAATTGTAGC
Statistics
Matches: 336, Mismatches: 74, Indels: 80
0.69 0.15 0.16
Matches are distributed among these distances:
2 26 0.08
3 238 0.71
4 66 0.20
5 6 0.02
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:7091275 original size:3 final size:3
Alignment explanation
Indices: 7091261--7091333 Score: 51
Period size: 3 Copynumber: 24.3 Consensus size: 3
7091251 GTTTATTTAC
* ** *
7091261 TTA TTA TT- TTA TTA TTAA TTA AT- TTA GCA TTA TTTA TTA TTA TCA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * *
7091306 TTA TTA TTT TTA TTA TTC TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7091334 CTTTTTAAAT
Statistics
Matches: 52, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
2 3 0.06
3 43 0.83
4 6 0.12
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7093993 original size:12 final size:11
Alignment explanation
Indices: 7093976--7094025 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
7093966 ATGTAAACTA
7093976 AAAAAACATAAT
1 AAAAAA-ATAAT
7093988 -AAAAAATATAT
1 AAAAAAATA-AT
*
7093999 AATAAAA-AAT
1 AAAAAAATAAT
7094009 AAAAAAATATAT
1 AAAAAAATA-AT
7094021 AAAAA
1 AAAAA
7094026 TTACCTTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
10 11 0.34
11 9 0.28
12 12 0.38
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAAAAATAAT
Found at i:7094000 original size:14 final size:14
Alignment explanation
Indices: 7093974--7094009 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7093964 ATATGTAAAC
7093974 TAAAAAA-ACATAA
1 TAAAAAATACATAA
*
7093987 TAAAAAATATATAA
1 TAAAAAATACATAA
7094001 TAAAAAATA
1 TAAAAAATA
7094010 AAAAAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAAATACATAA
Found at i:7094010 original size:24 final size:23
Alignment explanation
Indices: 7093977--7094022 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
7093967 TGTAAACTAA
7093977 AAAAACATAATAAAAAATATATAAT
1 AAAAACAT-A-AAAAAATATATAAT
7094002 AAAAA-ATAAAAAAATATATAA
1 AAAAACATAAAAAAATATATAA
7094023 AAATTACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 13 0.62
23 1 0.05
24 2 0.10
25 5 0.24
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (23 bp):
AAAAACATAAAAAAATATATAAT
Found at i:7094018 original size:20 final size:20
Alignment explanation
Indices: 7093985--7094025 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
7093975 AAAAAAACAT
7093985 AATAAAAAATATATAATAAAA
1 AATAAAAAATATAT-ATAAAA
7094006 AATAAAAAA-ATATATAAAA
1 AATAAAAAATATATATAAAA
7094025 A
1 A
7094026 TTACCTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 9 0.45
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (20 bp):
AATAAAAAATATATATAAAA
Found at i:7094630 original size:3 final size:3
Alignment explanation
Indices: 7094624--7094745 Score: 61
Period size: 3 Copynumber: 40.0 Consensus size: 3
7094614 TCATTCCTAA
* * * *
7094624 TAT TAT TAA TAC TAT TAT T-T CTAT TAT TAT TAT TTT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * * *
7094669 TAT TCT GGT TAT TAA CA- TAT TAT TAT TTT TAAT GTAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT
* *
7094715 TAGT TAT TAC TAT T-T CTAG TAT TAT TAT TAT
1 TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT
7094746 ATATAATATT
Statistics
Matches: 88, Mismatches: 23, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
2 3 0.03
3 78 0.89
4 6 0.07
5 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:7094697 original size:38 final size:41
Alignment explanation
Indices: 7094648--7094723 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 41
7094638 TTATTTCTAT
*
7094648 TATTATTATTTTT-AT-TATTAATATT-CTGGTTATTAACA
1 TATTATTATTTTTAATGTATTAATATTACTAGTTATTAACA
*
7094686 TATTATTATTTTTAATGTATTATTATTACTAGTTATTA
1 TATTATTATTTTTAATGTATTAATATTACTAGTTATTA
7094724 CTATTTCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 13 0.39
39 2 0.06
40 9 0.27
41 9 0.27
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (41 bp):
TATTATTATTTTTAATGTATTAATATTACTAGTTATTAACA
Found at i:7095233 original size:30 final size:27
Alignment explanation
Indices: 7095180--7095235 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
7095170 ATTGTGTATA
*
7095180 TTCTTAATATTATATATTGTATATATT
1 TTCTTAATACTATATATTGTATATATT
7095207 TTCTTAATAACTATATTATATGTATATAT
1 TTCTTAAT-ACTATA-TAT-TGTATATAT
7095236 AGTACATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 5 0.20
29 3 0.12
30 9 0.36
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (27 bp):
TTCTTAATACTATATATTGTATATATT
Found at i:7098726 original size:16 final size:17
Alignment explanation
Indices: 7098694--7098726 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7098684 TTTATAAGTA
*
7098694 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
7098711 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7098727 GTGTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7099147 original size:92 final size:91
Alignment explanation
Indices: 7099022--7099283 Score: 380
Period size: 91 Copynumber: 2.9 Consensus size: 91
7099012 TGCCATAGTG
* * *
7099022 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCGATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
* * *
7099087 TTCTTTTTATGTCACGTTGCCACGGTA
66 TTCATTTCATATCACGTTG-CACGGTA
* *
7099114 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
7099179 TTCATTTCATATCACGTTGCATGGTA
66 TTCATTTCATATCACGTTGCACGGTA
* * * *
7099205 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
**
7099270 CACATTTCATATCA
66 TTCATTTCATATCA
7099284 GAGAGCACAC
Statistics
Matches: 153, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 77 0.50
92 76 0.50
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (91 bp):
TCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
TTCATTTCATATCACGTTGCACGGTA
Found at i:7099284 original size:46 final size:46
Alignment explanation
Indices: 7099012--7099283 Score: 341
Period size: 46 Copynumber: 5.9 Consensus size: 46
7099002 TTTGACATGA
* * * * *
7099012 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * * * *
7099058 TGCGATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *** *
7099104 TGCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
7099150 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
7099196 TG-CATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
7099241 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
7099284 GAGAGCACAC
Statistics
Matches: 201, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 45 0.22
46 156 0.78
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:7104227 original size:16 final size:17
Alignment explanation
Indices: 7104195--7104227 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7104185 TTTATAAGTA
*
7104195 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
7104212 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
7104228 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:7104831 original size:46 final size:46
Alignment explanation
Indices: 7104508--7104826 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
7104498 TTATCTTTGA
* * * * *
7104508 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
**
7104554 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TTTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * **
7104599 CACGTTGCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * **
7104645 CATGTTGCCATGGTATCTTTCAACAATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
7104691 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
7104737 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACAT-ATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATGT
* *
7104783 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
7104827 ATCAGAGAGC
Statistics
Matches: 244, Mismatches: 26, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
45 40 0.16
46 203 0.83
47 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:7117051 original size:76 final size:76
Alignment explanation
Indices: 7116951--7117201 Score: 285
Period size: 76 Copynumber: 3.3 Consensus size: 76
7116941 CAATTTCTGC
* * *
7116951 TTTTCAATGTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGC
1 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGC
7117016 ACGCAGAGGTA
66 ACGCAGAGGTA
* *
7117027 TTTTCAATTTCTACTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GAG
1 TTTTCAATTTCTGCTTTTC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
** *
7117091 --G-ACGTTGAGGAA
62 TCGCACGCAGAGGTA
* * *
7117103 TTTTCGATTTCTGCTTTTCAAAGAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGCTTTTCAAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCG
* *
7117168 CATGCCGAGGTA
65 CACGCAGAGGTA
** *
7117180 TTTTCAAAATCTGCTTTCCAAA
1 TTTTCAATTTCTGCTTTTCAAA
7117202 TTAAGTTTAA
Statistics
Matches: 145, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
72 3 0.02
73 34 0.23
74 2 0.01
76 40 0.28
77 26 0.18
79 2 0.01
80 38 0.26
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (76 bp):
TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGC
ACGCAGAGGTA
Found at i:7117080 original size:80 final size:77
Alignment explanation
Indices: 7116951--7117186 Score: 284
Period size: 80 Copynumber: 3.1 Consensus size: 77
7116941 CAATTTCTGC
* * *
7116951 TTTTCAATGTCT-GTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCG
1 TTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCG
7117015 CACGCAGAGGTA
66 CACGCAGAGGTA
*
7117027 TTTTCAATTTCTACTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GAG
1 TTTTCAATTTCTACTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
** *
7117091 --G-ACGTTGAGGAA
63 TCGCACGCAGAGGTA
* * * * *
7117103 TTTTCGATTTCTGCTTTTCAAAGAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCG
* *
7117168 CATGCCGAGGTA
66 CACGCAGAGGTA
7117180 TTTTCAA
1 TTTTCAA
7117187 AATCTGCTTT
Statistics
Matches: 134, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
73 37 0.28
74 2 0.01
76 36 0.27
77 18 0.13
79 2 0.01
80 39 0.29
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (77 bp):
TTTTCAATTTCTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCG
CACGCAGAGGTA
Found at i:7117452 original size:45 final size:45
Alignment explanation
Indices: 7117367--7117456 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
7117357 GCATAAAGAT
* * * *
7117367 TGGAGTTGATTGAAGATACCAGATTTTGTCTCCCTGAAGTTGCAG
1 TGGAGTTGATCGAAGATACCAGATCTTGCCTCCCTAAAGTTGCAG
* * **
7117412 TGGAGTTGATCGAGGATATCAGATCTTGCCTTTCTAAAGTTGCAG
1 TGGAGTTGATCGAAGATACCAGATCTTGCCTCCCTAAAGTTGCAG
7117457 AAGAGAAGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (45 bp):
TGGAGTTGATCGAAGATACCAGATCTTGCCTCCCTAAAGTTGCAG
Found at i:7118041 original size:16 final size:14
Alignment explanation
Indices: 7117999--7118028 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7117989 GAAACCCAAA
7117999 CTCCCCACTTGCCT
1 CTCCCCACTTGCCT
7118013 CTCCCCACTTGCCT
1 CTCCCCACTTGCCT
7118027 CT
1 CT
7118029 GCCACCACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.57, G:0.07, T:0.30
Consensus pattern (14 bp):
CTCCCCACTTGCCT
Found at i:7120270 original size:23 final size:25
Alignment explanation
Indices: 7120221--7120268 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
7120211 TGATATAATA
7120221 AGTATAATAAATAATAGTGTAAAAAT
1 AGTATAATAAATAATAGTG-AAAAAT
7120247 AGTATAATAAATAATAG-GAAAA
1 AGTATAATAAATAATAGTGAAAA
7120269 TAATTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 4 0.18
25 1 0.05
26 17 0.77
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.27
Consensus pattern (25 bp):
AGTATAATAAATAATAGTGAAAAAT
Found at i:7122493 original size:132 final size:133
Alignment explanation
Indices: 7122187--7123225 Score: 1251
Period size: 133 Copynumber: 7.9 Consensus size: 133
7122177 AATCTTGGGT
* * * *
7122187 CTACTCCACTACAACTTTAAGGAGCTAGGGTGGTGACTCAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* *
7122252 AGCCTAGATCCGCTGTCTTCGATCTGCTCCACTGCAATCTCA-GGAAAAATAGATCTACAATCTT
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACA-AGATCTACAATCTT
7122316 CAAC
130 CAAC
**
7122320 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCACTGCAACATCAGAA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
*
7122385 AGCCTAGATTCGCTGTCTTCGATCTGC-CC-CTTGCAATCTCAGGGAAACAAGATCTACAATATT
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCAC-TGCAATCTCAGGGAAACAAGATCTACAATCTT
*
7122448 CAGC
130 CAAC
* * * * * *
7122452 CTACTCCACTACAACCTTAGGGAGCTACGATGGT-AGCTTAAATCTGCTTCGCTGTAACTTTAAG
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGA-CTTAAATCTGCTTCACTGCAAC-ATCAG
* * * * * * *
7122516 AAA-CCGAGATTCACCGTCTTCGATCTGCT---C--C-A-CT---GGAGACGAGGTCTGCAATCT
64 AAAGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCT
****
7122570 TGGGT
129 TCAAC
* *
7122575 CTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTGCTTCGCTGCAACATCAAGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATC-AGA
* * **
7122640 AA-CCTAGATCCGCCGTCTTTAATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTT
65 AAGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTT
7122704 CAAC
130 CAAC
* * * *
7122708 TTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAATATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * * *
7122773 AGCCTAGATCCGCTGTCTTCGATCTGCTCCACTACAATCTCAAGAAAACAAGATCTACAATCTTC
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
7122838 AAC
131 AAC
** *
7122841 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
7122906 AGCCTAGATTCGCTGTCTTCGATCTGC-CC-CTTGCAATCTCAGGGAAACAAGATCTACAATCTT
66 AGCCTAGATTCGCTGTCTTCGATCTGCTCCAC-TGCAATCTCAGGGAAACAAGATCTACAATCTT
7122969 CAAC
130 CAAC
* * * *
7122973 CTACTCTACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGAA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * * * * **
7123038 AGTCAAGATTC-ATCGTCTTCGATCTACTCTACTGCAA-CTTCAGGGAAACAAGATCTGTAAT-T
66 AGCCTAGATTCGCT-GTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACAAGATCTACAATCT
7123100 TCAAC
129 TCAAC
* * * * *
7123105 CTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTTACTGCAACTTCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
* * * *
7123170 AGTCAAGATTC-ATCGTCTTCGATCTACTCCACTGCAA-CTTCAGGGAAACAAGATCT
66 AGCCTAGATTCGCT-GTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACAAGATCT
7123226 GTAGGATTCG
Statistics
Matches: 798, Mismatches: 85, Indels: 47
0.86 0.09 0.05
Matches are distributed among these distances:
122 1 0.00
123 95 0.12
124 1 0.00
126 3 0.00
127 1 0.00
128 2 0.00
129 1 0.00
130 2 0.00
131 4 0.01
132 343 0.43
133 344 0.43
134 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACATCAGAA
AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
AAC
Found at i:7123222 original size:45 final size:44
Alignment explanation
Indices: 7122944--7123223 Score: 139
Period size: 45 Copynumber: 6.3 Consensus size: 44
7122934 CCTTGCAATC
* * * *
7122944 TCAGGGAAACAAGATCTACA-ATCTTCAACCTACTCTACTACAACT
1 TCAGGGAAACAAGAT-T-CATGTCTTCAATCTACTCCACTGCAACT
* * * * * * * *
7122989 TTAGGG-AGCTAGGTT-AGTGACTTAAATCTGCTTCACTGCAACT
1 TCAGGGAAACAAGATTCA-TGTCTTCAATCTACTCCACTGCAACT
* *
7123032 TCA--GAAAGTCAAGATTCATCGTCTTCGATCTACTCTACTGCAACT
1 TCAGGGAAA--CAAGATTCAT-GTCTTCAATCTACTCCACTGCAACT
* * *
7123077 TCAGGGAAACAAGA-TC-TGTAATTTCAACCTACTCCACTACAACT
1 TCAGGGAAACAAGATTCATGT--CTTCAATCTACTCCACTGCAACT
* * * * * * * **
7123121 TTAGGG-AGCTAGGTT-AGTGACTTAAATCTGCTTTACTGCAACT
1 TCAGGGAAACAAGATTCA-TGTCTTCAATCTACTCCACTGCAACT
* *
7123164 TCA-GGAAGTCAAGATTCATCGTCTTCGATCTACTCCACTGCAACT
1 TCAGGGAA-ACAAGATTCAT-GTCTTCAATCTACTCCACTGCAACT
7123209 TCAGGGAAACAAGAT
1 TCAGGGAAACAAGAT
7123224 CTGTAGGATT
Statistics
Matches: 166, Mismatches: 50, Indels: 38
0.65 0.20 0.15
Matches are distributed among these distances:
41 2 0.01
42 5 0.03
43 44 0.27
44 43 0.26
45 64 0.39
46 4 0.02
47 4 0.02
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (44 bp):
TCAGGGAAACAAGATTCATGTCTTCAATCTACTCCACTGCAACT
Found at i:7123249 original size:132 final size:131
Alignment explanation
Indices: 7122193--7123225 Score: 908
Period size: 132 Copynumber: 7.9 Consensus size: 131
7122183 GGGTCTACTC
* * * *
7122193 CACTACAACTTTAAGGAGCTAGGGTGGTGACTCAAATCTGCTTCACTGCAACATCAGGAAGCCTA
1 CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCTA
* * * *
7122258 GA-TCCGCTGTCTTCGATCTGCTCCACTGCAATCTCA-GGAAAAATAGATCTACAATCTTCAACC
66 GATTCAGC-GTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACA-AGATCTA-TATATTCAACC
* *
7122321 TACTC
128 -AATT
** * *
7122326 CACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCACTGCAACATCAGAAAGCCTA
1 CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCTA
* *
7122391 GATTC-GCTGTCTTCGATCTGC-CC-CTTGCAATCTCAGGGAAACAAGATCTACAATATTCAGCC
66 GATTCAGC-GTCTTCGATCTGCTCCAC-TGCAATCTCAGGGAAACAAGATCTA-TATATTCAACC
* *
7122453 TACTC
128 -AATT
* * * * * * * *
7122458 CACTACAACCTTAGGGAGCTACGATGGT-AGCTTAAATCTGCTTCGCTGTAACTTTAAGAAACCG
1 CACTACAACTTTAGGGAGCTAGGATGGTGA-CTTAAATCTGCTTCACTGCAACTTCAGGAAGCCT
* * * **** *** *
7122522 AGATTCACCGTCTTCGATCTGCTCCACTGGAGA-C-GAGGTCTGC-A-ATCT-T-GGGTCTA-C-
65 AGATTCAGCGTCTTCGATCTGCTCCACTGCA-ATCTCAGGGAAACAAGATCTATATATTCAACCA
*
7122579 -TC
129 ATT
* * * * *
7122581 CACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTGCTTCGCTGCAACATCAAGAAACCTA
1 CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCTA
* ** * * *
7122646 GA-TCCGCCGTCTTTAATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTCAACTT
66 GATTCAG-CGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTA-TATATTCAAC-C
* *
7122710 ACTC
128 AATT
*
7122714 CACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAA-TATCAGGAAGCCT
1 CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACT-TCAGGAAGCCT
* * * * * *
7122778 AGA-TCCGCTGTCTTCGATCTGCTCCACTACAATCTCAAGAAAACAAGATCTACAATCTTCAACC
65 AGATTCAGC-GTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTA-TATATTCAACC
* *
7122842 TACTC
128 -AATT
** *
7122847 CACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCACTGCAACATCAGGAAGCCTA
1 CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCTA
* *
7122912 GATTC-GCTGTCTTCGATCTGC-CC-CTTGCAATCTCAGGGAAACAAGATCTACAATCTTCAACC
66 GATTCAGC-GTCTTCGATCTGCTCCAC-TGCAATCTCAGGGAAACAAGATCTA-TATATTCAACC
* *
7122974 TACT
128 AATT
* * * * *
7122978 CTACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGAAAGTCA
1 C-ACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCT
* * * *
7123043 AGATTCATCGTCTTCGATCTACTCTACTGCAA-CTTCAGGGAAACAAGATCTGTA-ATTTCAACC
65 AGATTCAGCGTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACAAGATCTATATA-TTCAACC
* *
7123106 TACTC
128 -AATT
* * * * *
7123111 CACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTTACTGCAACTTCAGGAAGTCAA
1 CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCTA
* *
7123176 GATTCATCGTCTTCGATCTACTCCACTGCAA-CTTCAGGGAAACAAGATCT
66 GATTCAGCGTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACAAGATCT
7123226 GTAGGATTCG
Statistics
Matches: 767, Mismatches: 99, Indels: 69
0.82 0.11 0.07
Matches are distributed among these distances:
122 3 0.00
123 81 0.11
124 5 0.01
125 1 0.00
126 5 0.01
127 2 0.00
129 3 0.00
130 4 0.01
131 4 0.01
132 338 0.44
133 314 0.41
134 7 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (131 bp):
CACTACAACTTTAGGGAGCTAGGATGGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGCCTA
GATTCAGCGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTATATATTCAACCAAT
T
Found at i:7129082 original size:20 final size:20
Alignment explanation
Indices: 7129057--7129096 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7129047 TTAGAAGTAA
7129057 GGCCAACACCGAAATACGGG
1 GGCCAACACCGAAATACGGG
7129077 GGCCAACACCGAAATACGGG
1 GGCCAACACCGAAATACGGG
7129097 CTGGTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.30, G:0.30, T:0.05
Consensus pattern (20 bp):
GGCCAACACCGAAATACGGG
Found at i:7136796 original size:3 final size:3
Alignment explanation
Indices: 7136778--7136899 Score: 52
Period size: 3 Copynumber: 40.0 Consensus size: 3
7136768 TCTACACTAA
* * * * *
7136778 TAT TAT TAA TAC TAT TAT T-T CTAT TAT TAT TAT TGT TAT AAT TAA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * * *
7136823 TAT TCT GGT TAT TAA CA- TAT TAT TAT TTT TAAT GTAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT
* *
7136869 TAGT TAT TAC TAT T-T CTAG TAT TAT TAT TAT
1 TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT
7136900 ATATAATATT
Statistics
Matches: 86, Mismatches: 25, Indels: 16
0.68 0.20 0.13
Matches are distributed among these distances:
2 3 0.03
3 76 0.88
4 6 0.07
5 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:7137381 original size:30 final size:27
Alignment explanation
Indices: 7137328--7137383 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
7137318 ATTGTGTATA
*
7137328 TTCTTAATATTATATATTGTATATATT
1 TTCTTAATACTATATATTGTATATATT
7137355 TTCTTAATAACTATATTATATGTATATAT
1 TTCTTAAT-ACTATA-TAT-TGTATATAT
7137384 AGTACATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 5 0.20
29 3 0.12
30 9 0.36
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (27 bp):
TTCTTAATACTATATATTGTATATATT
Found at i:7142729 original size:30 final size:31
Alignment explanation
Indices: 7142695--7142756 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
7142685 ATTTATTTTA
* *
7142695 TTGTTAATTTTCTTATTATTTTA-AAGGAAT
1 TTGTTAATTTTATTATTATTTTAGAAGCAAT
7142725 TTGTTAATTTTATTATTATTTTAGAAGCAAT
1 TTGTTAATTTTATTATTATTTTAGAAGCAAT
7142756 T
1 T
7142757 GCTTGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (31 bp):
TTGTTAATTTTATTATTATTTTAGAAGCAAT
Found at i:7150089 original size:5 final size:5
Alignment explanation
Indices: 7150075--7150138 Score: 64
Period size: 5 Copynumber: 13.0 Consensus size: 5
7150065 CAATCTTTCT
*
7150075 TTTTA TTTTTA TTTT- TATTTA -TTT- TTTTA TTTTA TTATT- TATTA
1 TTTTA -TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TT-TTA TTTTA
7150119 TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA
7150139 GTTAAATATT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
4 9 0.18
5 34 0.68
6 7 0.14
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:7150091 original size:12 final size:12
Alignment explanation
Indices: 7150074--7150137 Score: 64
Period size: 12 Copynumber: 5.3 Consensus size: 12
7150064 CCAATCTTTC
7150074 TTTTTATTTTTA
1 TTTTTATTTTTA
7150086 TTTTTATTTATT-
1 TTTTTATTT-TTA
7150098 TTTTTA-TTTTA
1 TTTTTATTTTTA
7150109 TTATTTATTATTT-
1 TT-TTTATT-TTTA
7150122 TATTTTA-TTTTA
1 T-TTTTATTTTTA
7150134 TTTT
1 TTTT
7150138 AGTTAAATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
10 2 0.04
11 10 0.22
12 21 0.47
13 8 0.18
14 4 0.09
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:7150097 original size:10 final size:10
Alignment explanation
Indices: 7150082--7150137 Score: 50
Period size: 8 Copynumber: 5.8 Consensus size: 10
7150072 TCTTTTTATT
7150082 TTTATTTTTA
1 TTTATTTTTA
7150092 TTTA-TTTT-
1 TTTATTTTTA
7150100 TTTA-TTTTA
1 TTTATTTTTA
7150109 -TTATTTATTA
1 TTTATTT-TTA
7150119 TTT-TATTTTA
1 TTTAT-TTTTA
7150129 TTTTATTTT
1 -TTTATTTT
7150138 AGTTAAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
8 11 0.28
9 6 0.15
10 11 0.28
11 10 0.26
12 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:7150114 original size:20 final size:20
Alignment explanation
Indices: 7150080--7150130 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
7150070 TTTCTTTTTA
7150080 TTTTTA-TTT-TTATTTATT
1 TTTTTATTTTATTATTTATT
7150098 TTTTTATTTTATTATTTATT
1 TTTTTATTTTATTATTTATT
*
7150118 ATTTTATTTTATT
1 TTTTTATTTTATT
7150131 TTATTTTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 6 0.20
19 3 0.10
20 21 0.70
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTATTTTATTATTTATT
Found at i:7151465 original size:11 final size:11
Alignment explanation
Indices: 7151451--7151476 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7151441 AATAAAATTT
7151451 AAAAAAATAAA
1 AAAAAAATAAA
7151462 AAAAAAATAAA
1 AAAAAAATAAA
7151473 AAAA
1 AAAA
7151477 GGAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:7151473 original size:18 final size:18
Alignment explanation
Indices: 7151450--7151502 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
7151440 TAATAAAATT
*
7151450 TAAAAAAATAAAAAAAAAA
1 TAAAAAAA-GAAAAAAAAA
*
7151469 TAAAAAAAGGAAAAAAAA
1 TAAAAAAAGAAAAAAAAA
* *
7151487 TAAGAGAAGAAAAAAA
1 TAAAAAAAGAAAAAAA
7151503 TAAGTACTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 21 0.72
19 8 0.28
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.08
Consensus pattern (18 bp):
TAAAAAAAGAAAAAAAAA
Found at i:7151941 original size:18 final size:18
Alignment explanation
Indices: 7151906--7151939 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7151896 TTTTAGGGAC
*
7151906 TAAATTGAAGGCGAAAAG
1 TAAATTCAAGGCGAAAAG
7151924 TAAATTCAAGG-GAAAA
1 TAAATTCAAGGCGAAAA
7151940 AGCGTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18
Consensus pattern (18 bp):
TAAATTCAAGGCGAAAAG
Found at i:7155764 original size:19 final size:18
Alignment explanation
Indices: 7155728--7155766 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7155718 TACAAATACA
**
7155728 AACATTACATAATTATTT
1 AACATTACATAACAATTT
7155746 AACATTCACATAACAATTT
1 AACATT-ACATAACAATTT
7155765 AA
1 AA
7155767 TCATGTCGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (18 bp):
AACATTACATAACAATTT
Found at i:7156393 original size:22 final size:22
Alignment explanation
Indices: 7156363--7156423 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 22
7156353 TATGCACTAT
*
7156363 TAAACAGAGAGCACGAATGTGC
1 TAAATAGAGAGCACGAATGTGC
*
7156385 TAAATAGAGAGCACTAATGTGC
1 TAAATAGAGAGCACGAATGTGC
7156407 TAATAATCAGAGAGCAC
1 T-A-AAT-AGAGAGCAC
7156424 TGACGTGCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
22 21 0.62
23 1 0.03
24 3 0.09
25 9 0.26
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (22 bp):
TAAATAGAGAGCACGAATGTGC
Found at i:7156424 original size:25 final size:25
Alignment explanation
Indices: 7156367--7156441 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
7156357 CACTATTAAA
*
7156367 CAGAGAGCACGAATGTGCT-A-AAT
1 CAGAGAGCACTAATGTGCTAATAAT
7156390 -AGAGAGCACTAATGTGCTAATAAT
1 CAGAGAGCACTAATGTGCTAATAAT
* * *
7156414 CAGAGAGCACTGACGTGCTAATTAT
1 CAGAGAGCACTAATGTGCTAATAAT
7156439 CAG
1 CAG
7156442 TGAGTGCGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
22 17 0.38
23 1 0.02
24 3 0.07
25 24 0.53
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (25 bp):
CAGAGAGCACTAATGTGCTAATAAT
Found at i:7159728 original size:50 final size:50
Alignment explanation
Indices: 7159669--7159896 Score: 366
Period size: 50 Copynumber: 4.5 Consensus size: 50
7159659 GACCATGGCA
* * *
7159669 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
7159719 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
7159769 AAAATGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
7159819 AAAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
7159869 ACAAGTAAAAAGTGGTAGCTTCGGCTAC
1 A-AAGTGATAAGTGATAGCTTCGGCTAC
7159897 CTGATTATCG
Statistics
Matches: 165, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 143 0.87
51 22 0.13
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (50 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:7159949 original size:31 final size:31
Alignment explanation
Indices: 7159905--7159980 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
7159895 ACCTGATTAT
* *
7159905 CGGCTACTTGATCAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAATGAAAAATGGTAGCTC
* * *
7159936 CGGCTACCCGATCAATGAAAAGTGGTAGCTT
1 CGGCTACCTGATCAATGAAAAATGGTAGCTC
7159967 CGGCTACCTGATCA
1 CGGCTACCTGATCA
7159981 TCAGCTACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (31 bp):
CGGCTACCTGATCAATGAAAAATGGTAGCTC
Found at i:7159988 original size:46 final size:46
Alignment explanation
Indices: 7159938--7160026 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
7159928 GGTAGCTCCG
*
7159938 GCTACCCGATCAATGAAAAGTGGTAGCT-TCGGCTACCTGATCATCA
1 GCTACCCGATCAATGAAAAATGGTAGCTCT-GGCTACCTGATCATCA
** * *
7159984 GCTACTTGATTAGTGAAAAATGGTAGCTCTGGCTACCTGATCA
1 GCTACCCGATCAATGAAAAATGGTAGCTCTGGCTACCTGATCA
7160027 GTGAATAGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 36 0.97
47 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
GCTACCCGATCAATGAAAAATGGTAGCTCTGGCTACCTGATCATCA
Found at i:7160003 original size:77 final size:77
Alignment explanation
Indices: 7159876--7160050 Score: 287
Period size: 77 Copynumber: 2.3 Consensus size: 77
7159866 ATGACAAGTA
* *
7159876 AAAAGTGGTAGCTTCGGCTACCTGATTATCGGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
1 AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
7159941 ACCCGATCAATG
66 ACCCGATCAATG
* *
7159953 AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATTAGTGAAAAATGGTAGCTCTGGCT
1 AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
* *
7160018 ACCTGATCAGTG
66 ACCCGATCAATG
*
7160030 AATAGTGGTAGCTTCGGCTAC
1 AAAAGTGGTAGCTTCGGCTAC
7160051 AAGTGACAAG
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
77 91 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (77 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCATCAGCTACTTGATCAGTGAAAAATGGTAGCTCCGGCT
ACCCGATCAATG
Found at i:7160030 original size:31 final size:31
Alignment explanation
Indices: 7159984--7160050 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
7159974 CTGATCATCA
* *
7159984 GCTACTTGATTAGTGAAAAATGGTAGC-TCTG
1 GCTACCTGATCAGTGAAAAATGGTAGCTTC-G
* *
7160015 GCTACCTGATCAGTGAATAGTGGTAGCTTCG
1 GCTACCTGATCAGTGAAAAATGGTAGCTTCG
7160046 GCTAC
1 GCTAC
7160051 AAGTGACAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (31 bp):
GCTACCTGATCAGTGAAAAATGGTAGCTTCG
Found at i:7166016 original size:31 final size:31
Alignment explanation
Indices: 7165981--7166040 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
7165971 GAGAATGAGA
7165981 AAAAAAATTGATTTTATACATATATGGAACG
1 AAAAAAATTGATTTTATACATATATGGAACG
*
7166012 AAAAAATTTGATTTTATACATATATGGAA
1 AAAAAAATTGATTTTATACATATATGGAA
7166041 TGACGCCGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (31 bp):
AAAAAAATTGATTTTATACATATATGGAACG
Found at i:7170576 original size:14 final size:15
Alignment explanation
Indices: 7170549--7170578 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7170539 ATAACCTTCT
7170549 AAATATTTATTATTA
1 AAATATTTATTATTA
7170564 AAATATTTA-TATTA
1 AAATATTTATTATTA
7170578 A
1 A
7170579 TCAAAATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATATTTATTATTA
Found at i:7172919 original size:40 final size:38
Alignment explanation
Indices: 7172838--7172919 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 38
7172828 AAGCATTTAA
*
7172838 TTAATATTTTAAATTTTAAAAAAAAATAATAAATATTT
1 TTAATATTTTAAATTTTAAAAAAAAATAATAAATATCT
* * * *
7172876 TTAATAATTTTAATTTTTAAAAAATAAGTTATATATATCT
1 TTAAT-ATTTTAAATTTTAAAAAA-AAATAATAAATATCT
7172916 TTAA
1 TTAA
7172920 AACCTTAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 5 0.14
39 17 0.46
40 15 0.41
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (38 bp):
TTAATATTTTAAATTTTAAAAAAAAATAATAAATATCT
Found at i:7176281 original size:18 final size:18
Alignment explanation
Indices: 7176258--7176296 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7176248 TACGACCGTT
7176258 TACGGCACTACTCACGTA
1 TACGGCACTACTCACGTA
**
7176276 TACGGCACTGTTCACGTA
1 TACGGCACTACTCACGTA
7176294 TAC
1 TAC
7176297 AGTAGTTGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (18 bp):
TACGGCACTACTCACGTA
Found at i:7184062 original size:14 final size:14
Alignment explanation
Indices: 7184023--7184063 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7184013 ATATTAAGTA
7184023 ATTAATAATATTTAT
1 ATTAAT-ATATTTAT
* *
7184038 ATTATTCTATTTAT
1 ATTAATATATTTAT
7184052 ATTAATATATTT
1 ATTAATATATTT
7184064 CGATTTAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATATATTTAT
Found at i:7184135 original size:17 final size:17
Alignment explanation
Indices: 7184115--7184154 Score: 71
Period size: 17 Copynumber: 2.3 Consensus size: 17
7184105 TATTCTTATA
7184115 TTATTATTTCTATTTAG
1 TTATTATTTCTATTTAG
7184132 TTATTATTTCTATTTAG
1 TTATTATTTCTATTTAG
7184149 TATATT
1 T-TATT
7184155 TAGAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (17 bp):
TTATTATTTCTATTTAG
Found at i:7184173 original size:17 final size:16
Alignment explanation
Indices: 7184113--7184172 Score: 68
Period size: 17 Copynumber: 3.7 Consensus size: 16
7184103 ATTATTCTTA
7184113 TATTATTATTTCTATT
1 TATTATTATTTCTATT
7184129 TAGTTATTATTTCTATT
1 TA-TTATTATTTCTATT
* **
7184146 TAGTA-TATTTAGAATT
1 TATTATTATTT-CTATT
7184162 TATTATTATTT
1 TATTATTATTT
7184173 AATTTAAGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 5 0.14
16 11 0.30
17 21 0.57
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.63
Consensus pattern (16 bp):
TATTATTATTTCTATT
Found at i:7187305 original size:106 final size:106
Alignment explanation
Indices: 7187180--7187685 Score: 409
Period size: 115 Copynumber: 4.5 Consensus size: 106
7187170 GTTATACAAA
* *
7187180 AATACCAGTATTTAAAAAAAAATTGGTGCTAGCCTGCCAATGGCCGGCACCAGTATTTAAAAAAA
1 AATACGAGT-TTT-AAAAAAAATTGGTGCTAGCCTGTCAATGGCCGGCACCAGTATTT-AAAAAA
* *
7187245 AATTCAAATTTTTTTGGTGCTAGCCTGTCAATGGCCTGCACTAG
63 AATTCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCTGCACCAG
* * *
7187289 AATACGAGTTTTAAAAAAATATTTGGTGCTGGCCAGTCAATGGACGGCACCAGTA-TTAAAAAAA
1 AATACGAGTTTTAAAAAAA-A-TTGGTGCTAGCCTGTCAATGGCCGGCACCAGTATTTAAAAAAA
* *
7187353 A-TCAAATTTTTTTTGTGCTAGCCTGTCAATGG-TTGGCACCAC
64 ATTCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCT-GCACCAG
* * * *
7187395 AATACGAGTTTTCAAAAAAAAAATTGTTGCTAGTCTGTCAATGGCCGACACCAAAATACGAGTTT
1 AATACGAGTTTT---AAAAAAAATTGGTGCTAGCCTGTCAATGGCCGGCACC--AGT---A--TT
* * *
7187460 TTAAAAAAATTC-AATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAG
56 TAAAAAAAATTCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCTGCACCAG
* * *
7187510 AATACGAGTTTTTAAAAAAAAATTAATTTTTTTGGTG-TTGACTTGTCAATGGCCGGCACTAGTA
1 AATACGAG-TTTT---AAAAAA--AA-----TTGGTGCTAG-CCTGTCAATGGCCGGCACCAGTA
* *
7187574 -TT-AAAAAAATTCAAA-ATTTTTTGTTGCTGGCCTGTCAATGG-CTGGCACCAG
54 TTTAAAAAAAATTCAAATTTTTTTTG-TGCTAGCCTGTCAATGGCCT-GCACCAG
* * * *
7187625 AATACGAGTTTTTTTTAAAAAAAATTTAGTGCTGGCCTATCAATGCCCGGCACCAGTATTT
1 AATACGAG----TTTTAAAAAAAA-TTGGTGCTAGCCTGTCAATGGCCGGCACCAGTATTT
7187686 TAGTTTTTTT
Statistics
Matches: 327, Mismatches: 37, Indels: 65
0.76 0.09 0.15
Matches are distributed among these distances:
105 1 0.00
106 47 0.14
107 38 0.12
108 7 0.02
109 71 0.22
110 4 0.01
112 1 0.00
113 2 0.01
114 18 0.06
115 92 0.28
116 14 0.04
118 8 0.02
121 2 0.01
122 2 0.01
123 20 0.06
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Consensus pattern (106 bp):
AATACGAGTTTTAAAAAAAATTGGTGCTAGCCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAT
TCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCTGCACCAG
Found at i:7187524 original size:61 final size:61
Alignment explanation
Indices: 7187344--7187637 Score: 253
Period size: 54 Copynumber: 5.0 Consensus size: 61
7187334 GGCACCAGTA
* * ** *
7187344 TTAAAAAAAATCAAATTTTTTTTGTGCTAGCCTGTCAATGGTTGGCACCACAATACGAGTTT
1 TTAAAAAAATTC-AATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
* * * * * * *
7187406 TCAAAAAAA---AA---ATTGT-TGCTAGTCTGTCAATGGCCGACACCAAAATACGAGTTT
1 TTAAAAAAATTCAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
7187460 TTAAAAAAATTCAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
1 TTAAAAAAATTCAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
* * * * *
7187521 TTAAAAAAAAATT-AATTTTTTTGGTGTTGACTTGTCAATGGCCGGCA-C----T---AG-TA
1 TT--AAAAAAATTCAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
** *
7187574 TTAAAAAAATTCAAAATTTTTTGTTGCTGGCCTGTCAATGGCTGGCACCAGAATACGAGTTT
1 TTAAAAAAATTCAATTTTTTTTG-TGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
7187636 TT
1 TT
7187638 TTTAAAAAAA
Statistics
Matches: 184, Mismatches: 28, Indels: 40
0.73 0.11 0.16
Matches are distributed among these distances:
51 9 0.05
52 8 0.04
53 22 0.12
54 44 0.24
55 3 0.02
57 3 0.02
58 3 0.02
60 3 0.02
61 39 0.21
62 41 0.22
63 9 0.05
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (61 bp):
TTAAAAAAATTCAATTTTTTTTGTGCTGGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
Found at i:7187559 original size:62 final size:61
Alignment explanation
Indices: 7187429--7187637 Score: 213
Period size: 61 Copynumber: 3.5 Consensus size: 61
7187419 TGTTGCTAGT
* * *
7187429 CTGTCAATGGCCGACACCAAAATACGAGTTTTTAAAAAAATTCAATTTTTTTTGTGCTGGC
1 CTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAATTCAATTTTTTTGGTGCTGAC
* *
7187490 CTGTCAATGGCCGGCACCAGAATACGAGTTTTTAAAAAAAAATT-AATTTTTTTGGTGTTGAC
1 CTGTCAATGGCCGGCACCAAAATACGAGTTTTT--AAAAAAATTCAATTTTTTTGGTGCTGAC
* * * * *
7187552 TTGTCAATGGCCGGCA-C----T---AG-TATTAAAAAAATTCAAAATTTTTTGTTGCTGGC
1 CTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAATTC-AATTTTTTTGGTGCTGAC
* *
7187605 CTGTCAATGGCTGGCACCAGAATACGAGTTTTT
1 CTGTCAATGGCCGGCACCAAAATACGAGTTTTT
7187638 TTTAAAAAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 25
0.76 0.09 0.16
Matches are distributed among these distances:
51 9 0.07
53 31 0.26
54 3 0.02
57 1 0.01
58 1 0.01
61 34 0.28
62 33 0.27
63 9 0.07
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (61 bp):
CTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAATTCAATTTTTTTGGTGCTGAC
Found at i:7190660 original size:22 final size:21
Alignment explanation
Indices: 7190625--7190696 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
7190615 TAAATGAAAT
7190625 AAAATTAGATAAATT-CTATGAGAA
1 AAAATT-GATAAATTAC-ATG-G-A
7190649 AAAATTGA-AAATTACATGGA
1 AAAATTGATAAATTACATGGA
* * *
7190669 AAAATTGATCATTTAAATGGA
1 AAAATTGATAAATTACATGGA
*
7190690 AAGATTG
1 AAAATTG
7190697 GTCATTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 9 0.21
21 16 0.38
22 8 0.19
23 3 0.07
24 6 0.14
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.29
Consensus pattern (21 bp):
AAAATTGATAAATTACATGGA
Found at i:7190688 original size:21 final size:21
Alignment explanation
Indices: 7190664--7190708 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7190654 TGAAAATTAC
7190664 ATGGAAAAATTGATCATTTAA
1 ATGGAAAAATTGATCATTTAA
* *
7190685 ATGGAAAGATTGGTCATTTAA
1 ATGGAAAAATTGATCATTTAA
7190706 ATG
1 ATG
7190709 AAATGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.33
Consensus pattern (21 bp):
ATGGAAAAATTGATCATTTAA
Found at i:7190852 original size:26 final size:26
Alignment explanation
Indices: 7190813--7190894 Score: 112
Period size: 26 Copynumber: 3.0 Consensus size: 26
7190803 AAATTGAAAG
*
7190813 AAAAATAAATTTAAATGAAATGAGGAA
1 AAAAATTAA-TTAAATGAAATGAGGAA
7190840 AAAAATTAATTAAAATGAAATGA-GAA
1 AAAAATTAATT-AAATGAAATGAGGAA
7190866 AAAAATTAAATTAAATGAAATGAGAGAA
1 AAAAATT-AATTAAATGAAATGAG-GAA
7190894 A
1 A
7190895 CTTTTAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
26 23 0.46
27 23 0.46
28 4 0.08
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (26 bp):
AAAAATTAATTAAATGAAATGAGGAA
Found at i:7190855 original size:49 final size:50
Alignment explanation
Indices: 7190764--7190883 Score: 124
Period size: 49 Copynumber: 2.5 Consensus size: 50
7190754 AAATGGCAAA
** * * *
7190764 AAAAATAAATTGGAATGAAATG-GTACAAAATTTAAATGAAAATTGAAA-G
1 AAAAATAAATTTAAATGAAATGAGGAAAAAAATTAAATGAAAA-TGAAATG
*
7190813 AAAAATAAATTTAAATGAAATGAGGAAAAAAATT-AATTAAAATGAAATG
1 AAAAATAAATTTAAATGAAATGAGGAAAAAAATTAAATGAAAATGAAATG
*
7190862 AGAAAA-AAA-TTAAATTAAATGA
1 A-AAAATAAATTTAAATGAAATGA
7190884 AATGAGAGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
48 17 0.28
49 32 0.52
50 12 0.20
ACGTcount: A:0.62, C:0.01, G:0.13, T:0.24
Consensus pattern (50 bp):
AAAAATAAATTTAAATGAAATGAGGAAAAAAATTAAATGAAAATGAAATG
Found at i:7190886 original size:53 final size:53
Alignment explanation
Indices: 7190813--7190929 Score: 141
Period size: 53 Copynumber: 2.2 Consensus size: 53
7190803 AAATTGAAAG
7190813 AAAAA-TAAATTTAAATGAAATGAG-GAAAAAAATTAATTAAAAT-GAAATGAGAA
1 AAAAATTAAA-TTAAATGAAATGAGAG-AAAAAATTAATTAAAATAG-AATGAGAA
*** * *
7190866 AAAAATTAAATTAAATGAAATGAGAGAAACTTTTAATTTAAATAGTATGAGAA
1 AAAAATTAAATTAAATGAAATGAGAGAAAAAATTAATTAAAATAGAATGAGAA
7190919 AAAAATTAAAT
1 AAAAATTAAAT
7190930 GGAAAGATAG
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
53 50 0.89
54 6 0.11
ACGTcount: A:0.61, C:0.01, G:0.12, T:0.26
Consensus pattern (53 bp):
AAAAATTAAATTAAATGAAATGAGAGAAAAAATTAATTAAAATAGAATGAGAA
Found at i:7190901 original size:27 final size:26
Alignment explanation
Indices: 7190747--7190929 Score: 125
Period size: 27 Copynumber: 7.0 Consensus size: 26
7190737 AATTGGTAAT
*
7190747 TTAAATGAAATG-GCAAAAAAAATAAA
1 TTAAATGAAATGAG-AAAAAAATTAAA
* * *
7190773 TTGGAATGAAATG-GTACAAAA-T---
1 TT-AAATGAAATGAGAAAAAAATTAAA
7190795 TTAAATGAAAATTGA-AAGAAAAA-TAAA
1 TTAAATG-AAA-TGAGAA-AAAAATTAAA
7190822 TTTAAATGAAATGAGGAAAAAAATT-AA
1 -TTAAATGAAATGA-GAAAAAAATTAAA
7190849 TTAAAATGAAATGAGAAAAAAATTAAA
1 TT-AAATGAAATGAGAAAAAAATTAAA
*** *
7190876 TTAAATGAAATGAGAGAAACTTTTAAT
1 TTAAATGAAATGAGA-AAAAAATTAAA
*
7190903 TTAAAT-AGTATGAGAAAAAAATTAAA
1 TTAAATGA-AATGAGAAAAAAATTAAA
7190929 T
1 T
7190930 GGAAAGATAG
Statistics
Matches: 126, Mismatches: 15, Indels: 32
0.73 0.09 0.18
Matches are distributed among these distances:
21 4 0.03
22 5 0.04
23 3 0.02
24 5 0.04
25 1 0.01
26 44 0.35
27 54 0.43
28 10 0.08
ACGTcount: A:0.59, C:0.02, G:0.14, T:0.26
Consensus pattern (26 bp):
TTAAATGAAATGAGAAAAAAATTAAA
Found at i:7190927 original size:26 final size:26
Alignment explanation
Indices: 7190792--7190927 Score: 141
Period size: 27 Copynumber: 5.1 Consensus size: 26
7190782 AATGGTACAA
*
7190792 AATTTAAATGAAAATTGA-AAGAAAAATA
1 AATTTAAATG-AAA-TGAGAA-AAAAATT
7190820 AATTTAAATGAAATGAGGAAAAAAATT
1 AATTTAAATGAAATGA-GAAAAAAATT
*
7190847 AATTAAAATGAAATGAGAAAAAAATT
1 AATTTAAATGAAATGAGAAAAAAATT
* ***
7190873 AAATTAAATGAAATGAGAGAAACTTTT
1 AATTTAAATGAAATGAGA-AAAAAATT
*
7190900 AATTTAAAT-AGTATGAGAAAAAAATT
1 AATTTAAATGA-AATGAGAAAAAAATT
7190926 AA
1 AA
7190928 ATGGAAAGAT
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
26 37 0.40
27 43 0.47
28 12 0.13
ACGTcount: A:0.60, C:0.01, G:0.12, T:0.26
Consensus pattern (26 bp):
AATTTAAATGAAATGAGAAAAAAATT
Found at i:7191032 original size:48 final size:46
Alignment explanation
Indices: 7190921--7191080 Score: 125
Period size: 48 Copynumber: 3.5 Consensus size: 46
7190911 TATGAGAAAA
* * * *
7190921 AAATT-AAATGGAAAGATAGATAATTTAAAAGAAATGACAAAAAAATT
1 AAATTAAAATTGAAAAATA-AT-ATTTAAATGAAATGAGAAAAAAATT
*** *
7190968 AAATTTGCATTGAAAAATAGAATATTTAAATGAAATGAGGAAAAAATT
1 AAATTAAAATTGAAAAAT--AATATTTAAATGAAATGAGAAAAAAATT
*
7191016 AAAATTAAAATT-AAAAATAATA--TAAATGAATTGAGAAAAAAA-T
1 -AAATTAAAATTGAAAAATAATATTTAAATGAAATGAGAAAAAAATT
** *
7191059 AAATTGGAATGGAAAAA-AATAT
1 AAATTAAAATTGAAAAATAATAT
7191081 ATAATATAAT
Statistics
Matches: 92, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
42 12 0.13
43 6 0.07
44 18 0.20
46 4 0.04
47 5 0.05
48 36 0.39
49 10 0.11
50 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.12, T:0.26
Consensus pattern (46 bp):
AAATTAAAATTGAAAAATAATATTTAAATGAAATGAGAAAAAAATT
Found at i:7191112 original size:6 final size:5
Alignment explanation
Indices: 7191093--7191186 Score: 75
Period size: 5 Copynumber: 17.6 Consensus size: 5
7191083 AATATAATTT
* *
7191093 AAATG AAATAG AAATGG AAATGG AAATG AAATT AGAATG AAATG AAGTTG
1 AAATG AAAT-G AAAT-G AAAT-G AAATG AAATG A-AATG AAATG AA-ATG
*
7191143 AAATG AAAT- AAAGTTG AAATG AAATA AAATG AAAAT- AAATG AAA
1 AAATG AAATG AAA--TG AAATG AAATG AAATG -AAATG AAATG AAA
7191187 AAAAAAGTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 16
0.76 0.07 0.16
Matches are distributed among these distances:
4 7 0.09
5 35 0.47
6 29 0.39
7 3 0.04
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (5 bp):
AAATG
Found at i:7191123 original size:11 final size:10
Alignment explanation
Indices: 7191093--7191186 Score: 75
Period size: 11 Copynumber: 8.8 Consensus size: 10
7191083 AATATAATTT
7191093 AAATGAAATAG
1 AAATGAAAT-G
7191104 AAATGGAAATGG
1 AAAT-GAAAT-G
*
7191116 AAATGAAATT
1 AAATGAAATG
7191126 AGAATGAAATG
1 A-AATGAAATG
*
7191137 AAGTTGAAATG
1 AA-ATGAAATG
7191148 AAAT-AAAGTTG
1 AAATGAAA--TG
*
7191159 AAATGAAATA
1 AAATGAAATG
7191169 AAATGAAAAT-
1 AAATG-AAATG
7191179 AAATGAAA
1 AAATGAAA
7191187 AAAAAAGTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
9 6 0.09
10 14 0.20
11 37 0.53
12 13 0.19
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (10 bp):
AAATGAAATG
Found at i:7191136 original size:16 final size:16
Alignment explanation
Indices: 7191088--7191186 Score: 89
Period size: 16 Copynumber: 6.1 Consensus size: 16
7191078 TATATAATAT
*
7191088 AATTTAAATGAAATAGA
1 AATTGAAATGAAAT-GA
*
7191105 AATGGAAATGGAAATGA
1 AATTGAAAT-GAAATGA
7191122 AATT-AGAATGAAATGA
1 AATTGA-AATGAAATGA
*
7191138 AGTTGAAATGAAAT-A
1 AATTGAAATGAAATGA
7191153 AAGTTGAAATGAAAT-A
1 AA-TTGAAATGAAATGA
*
7191169 AAATGAAAAT-AAATGA
1 AATTG-AAATGAAATGA
7191185 AA
1 AA
7191187 AAAAAAGTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
15 8 0.11
16 41 0.59
17 16 0.23
18 5 0.07
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.23
Consensus pattern (16 bp):
AATTGAAATGAAATGA
Found at i:7191308 original size:11 final size:11
Alignment explanation
Indices: 7191289--7191368 Score: 63
Period size: 11 Copynumber: 7.3 Consensus size: 11
7191279 CAAACTTTTT
7191289 TTTTCATTTCA
1 TTTTCATTTCA
* *
7191300 TTTTAATTTTA
1 TTTTCATTTCA
7191311 -TTTCATTTCA
1 TTTTCATTTCA
**
7191321 ACTTCATTTCA
1 TTTTCATTTCA
* *
7191332 TTCTAATTTCA
1 TTTTCATTTCA
* *
7191343 TTTACATTCCCA
1 TTTTCATT-TCA
*
7191355 TTTCCATTTCA
1 TTTTCATTTCA
7191366 TTT
1 TTT
7191369 AAATTATATT
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
10 8 0.15
11 35 0.67
12 9 0.17
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTCATTTCA
Found at i:7191313 original size:16 final size:16
Alignment explanation
Indices: 7191290--7191373 Score: 78
Period size: 16 Copynumber: 5.1 Consensus size: 16
7191280 AAACTTTTTT
7191290 TTTCATTTCATTTTAA
1 TTTCATTTCATTTTAA
* *
7191306 TTTTATTTCATTTCAA
1 TTTCATTTCATTTTAA
* *
7191322 CTTCATTTCATTCTAA
1 TTTCATTTCATTTTAA
***
7191338 TTTCATTTACATTCCCA
1 TTTCATTT-CATTTTAA
*
7191355 TTTCCATTTCATTTAAA
1 TTT-CATTTCATTTTAA
7191372 TT
1 TT
7191374 ATATTTTTTT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
16 33 0.61
17 16 0.30
18 5 0.09
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTCATTTCATTTTAA
Found at i:7191329 original size:21 final size:21
Alignment explanation
Indices: 7191285--7191329 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7191275 TTGTCAAACT
* **
7191285 TTTTTTTTCATTTCATTTTAA
1 TTTTATTTCATTTCAACTTAA
*
7191306 TTTTATTTCATTTCAACTTCA
1 TTTTATTTCATTTCAACTTAA
7191327 TTT
1 TTT
7191330 CATTCTAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATTTCATTTCAACTTAA
Found at i:7191363 original size:6 final size:5
Alignment explanation
Indices: 7191290--7191368 Score: 59
Period size: 5 Copynumber: 14.6 Consensus size: 5
7191280 AAACTTTTTT
* * * *
7191290 TTTCA TTTCA TTTTAA TTTTA TTTCA TTTCAA CTTCA TTTCA TTCTAA
1 TTTCA TTTCA -TTTCA TTTCA TTTCA TTTC-A TTTCA TTTCA TT-TCA
*
7191338 TTTCA TTTACA TTCCCA TTTCCA TTTCA TTT
1 TTTCA TTT-CA TT-TCA TTT-CA TTTCA TTT
7191369 AAATTATATT
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
5 34 0.58
6 25 0.42
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (5 bp):
TTTCA
Found at i:7191386 original size:22 final size:22
Alignment explanation
Indices: 7191361--7191428 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
7191351 CCCATTTCCA
*
7191361 TTTCATTTAAATTATATTTTTT
1 TTTCATTTCAATTATATTTTTT
*
7191383 TTTCAATTCCAATT-TATTTTTT
1 TTTC-ATTTCAATTATATTTTTT
* * * *
7191405 TCTCAATTCAGTTATATTATTT
1 TTTCATTTCAATTATATTTTTT
7191427 TT
1 TT
7191429 AAATTTAATT
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
21 6 0.17
22 23 0.64
23 7 0.19
ACGTcount: A:0.25, C:0.10, G:0.01, T:0.63
Consensus pattern (22 bp):
TTTCATTTCAATTATATTTTTT
Found at i:7191558 original size:26 final size:27
Alignment explanation
Indices: 7191531--7191637 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
7191521 CTTTCTATTT
*
7191531 AATTTTTTTCTCA-TACTATTTAAATTAA
1 AATTTTTTTCTCATTTC-ATTTAAATT-A
* * *
7191559 AAGTTTTCTCTCATTTCATTT-AATTT
1 AATTTTTTTCTCATTTCATTTAAATTA
*
7191585 AATTTTTTTCTCATTTCATTTCAATTA
1 AATTTTTTTCTCATTTCATTTAAATTA
*
7191612 AATTTTTTCCTCATTTCATTTAAATT
1 AATTTTTTTCTCATTTCATTTAAATT
7191638 TATCTTTCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 19 0.28
27 32 0.47
28 15 0.22
29 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.01, T:0.57
Consensus pattern (27 bp):
AATTTTTTTCTCATTTCATTTAAATTA
Found at i:7191611 original size:54 final size:54
Alignment explanation
Indices: 7191527--7191639 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
7191517 CTATCTTTCT
7191527 ATTTAATTTTTTTCTCATACTATTTAAATTAAAAGTTTTCTCTCATTTCATTT-A
1 ATTTAATTTTTTTCTCATACTATTTAAATTAAAAGTTTTC-CTCATTTCATTTAA
* * **
7191581 ATTTAATTTTTTTCTCAT-TTCATTTCAATTAAATTTTTTCCTCATTTCATTTAA
1 ATTTAATTTTTTTCTCATACT-ATTTAAATTAAAAGTTTTCCTCATTTCATTTAA
7191635 ATTTA
1 ATTTA
7191640 TCTTTCTTTC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 13 0.25
54 40 0.75
ACGTcount: A:0.28, C:0.13, G:0.01, T:0.58
Consensus pattern (54 bp):
ATTTAATTTTTTTCTCATACTATTTAAATTAAAAGTTTTCCTCATTTCATTTAA
Found at i:7191680 original size:49 final size:49
Alignment explanation
Indices: 7191602--7191713 Score: 138
Period size: 49 Copynumber: 2.3 Consensus size: 49
7191592 TTCTCATTTC
* * * *
7191602 ATTTCAATTAAATTTTTTCCTCATTTCATTTAAATTTATCTTTCTTT-CA
1 ATTTCATTTAAATTTTGTACTCATTTCATTCAAATTTATCTTT-TTTGCA
* *
7191651 ATTTTCATTTAAATTTTGTAC-CATTTCATTCCAATTTATCTTTTTTGCC
1 A-TTTCATTTAAATTTTGTACTCATTTCATTCAAATTTATCTTTTTTGCA
7191700 ATTTCATTTAAATT
1 ATTTCATTTAAATT
7191714 ACCAATCTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 16 0.29
49 23 0.42
50 16 0.29
ACGTcount: A:0.26, C:0.16, G:0.02, T:0.56
Consensus pattern (49 bp):
ATTTCATTTAAATTTTGTACTCATTTCATTCAAATTTATCTTTTTTGCA
Found at i:7191713 original size:27 final size:24
Alignment explanation
Indices: 7191570--7191710 Score: 99
Period size: 27 Copynumber: 5.5 Consensus size: 24
7191560 AGTTTTCTCT
7191570 CATTTCATTTAATTTAATTTTTTTC
1 CATTTCATTTAATTT-ATTTTTTTC
* *
7191595 TCATTTCATTTCAATTAAATTTTTTCC
1 -CATTTCATTT-AATT-TATTTTTTTC
7191622 TCATTTCATTTAAATTTATCTTTCTTTC
1 -CATTTCATTT-AATTTAT-TTT-TTTC
* * *
7191650 AATTTTCATTTAA---ATTTTGTAC
1 CA-TTTCATTTAATTTATTTTTTTC
*
7191672 CATTTCATTCCAATTTATCTTTTTTGC
1 CATTTCATT-TAATTTAT-TTTTTT-C
7191699 CATTTCATTTAA
1 CATTTCATTTAA
7191711 ATTACCAATC
Statistics
Matches: 91, Mismatches: 13, Indels: 22
0.72 0.10 0.17
Matches are distributed among these distances:
21 7 0.08
22 5 0.05
23 3 0.03
24 2 0.02
25 2 0.02
26 18 0.20
27 43 0.47
28 11 0.12
ACGTcount: A:0.25, C:0.16, G:0.01, T:0.57
Consensus pattern (24 bp):
CATTTCATTTAATTTATTTTTTTC
Found at i:7191777 original size:43 final size:43
Alignment explanation
Indices: 7191691--7191777 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 43
7191681 CCAATTTATC
*
7191691 TTTTTTGCCATTTCATTTAAATTACCAATCTTTTTCATGTAAT
1 TTTTTTGCCATTTCATTTAAATTACCAATCTTTTCCATGTAAT
* *
7191734 TTTTTTTCTCATTTCATTTAAATTACCAATC-TTTCCATTTAAT
1 TTTTTTGC-CATTTCATTTAAATTACCAATCTTTTCCATGTAAT
7191777 T
1 T
7191778 CCATGTAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 18 0.45
44 22 0.55
ACGTcount: A:0.25, C:0.17, G:0.02, T:0.55
Consensus pattern (43 bp):
TTTTTTGCCATTTCATTTAAATTACCAATCTTTTCCATGTAAT
Found at i:7194948 original size:108 final size:108
Alignment explanation
Indices: 7194766--7195235 Score: 545
Period size: 108 Copynumber: 4.3 Consensus size: 108
7194756 AAAAATTTAA
* * * * *
7194766 AATATTGGTGTCGGGCATTGACAGGCCA--ACACTAATTTTTTTAAAAAAACTCGTATTCTAGTG
1 AATACTGGTGCCGGCCATTGACAGGCCAGTAC-CAAATTTTTTTAAAAAAACTCGTATTCTGGTG
* * *
7194829 TCGGT-TATTGACAAGCCAGCAACAAAAAAATTTGAATTTTTTTT
65 -CCGTCCATTGACAGGCCAGCAACAAAAAAATTTGAATTTTTTTT
* *
7194873 AATACTGGTGCCGGCCATTGACAGGCCAGTACCGAATTTTTTTAAAAAAACTCGTATTTTGGTGC
1 AATACTGGTGCCGGCCATTGACAGGCCAGTACCAAATTTTTTTAAAAAAACTCGTATTCTGGTGC
* *
7194938 CGTCCATTGACAGGCAAGCACCAAAAAAATTTG-ATTTTTTTT
66 CGTCCATTGACAGGCCAGCAACAAAAAAATTTGAATTTTTTTT
** * *
7194980 TGTACTTGGTGCCGGCCATTAACAGGCCAGTACCAAATTTTTTTAAAAAAAAACTCGTATTGTGG
1 AATAC-TGGTGCCGGCCATTGACAGGCCAGTACCAAATTTTTTT--AAAAAAACTCGTATTCTGG
** * *
7195045 TGCCAACCATTGACAGGCCAGC-ACAAAAAAAAATTAAATTTTTTTT
63 TGCCGTCCATTGACAGGCCAGCAAC-AAAAAAATTTGAATTTTTTTT
* * * * * *
7195091 AATACTGGTGTCGACCATTGACTGGCTAGCACCAAATTTTTTTTTAAAAAACTCGTATTCTGGTG
1 AATACTGGTGCCGGCCATTGACAGGCCAGTACCAAA-TTTTTTTAAAAAAACTCGTATTCTGGTG
* * * * *
7195156 CAGGCAATTGACAGGCCAGCATCAAAAAATTTTGAATTTTTTTT
65 CCGTCCATTGACAGGCCAGCAACAAAAAAATTTGAATTTTTTTT
* *
7195200 AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAA
1 AATACTGGTGCCGGCCATTGACAGGCCAGTACCAAA
7195236 AAAATTTGAA
Statistics
Matches: 308, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
107 40 0.13
108 90 0.29
109 87 0.28
110 72 0.23
111 19 0.06
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (108 bp):
AATACTGGTGCCGGCCATTGACAGGCCAGTACCAAATTTTTTTAAAAAAACTCGTATTCTGGTGC
CGTCCATTGACAGGCCAGCAACAAAAAAATTTGAATTTTTTTT
Found at i:7195166 original size:109 final size:109
Alignment explanation
Indices: 7194766--7195235 Score: 515
Period size: 109 Copynumber: 4.3 Consensus size: 109
7194756 AAAAATTTAA
* * * * * * *
7194766 AATATTGGTGTCGGGCATTGACAGGCCAACA-CTAA-TTTTTTTAAAAAAACTCGTATTCTAGTG
1 AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTG
* ** * *
7194829 TC-GGTTATTGACAAGCCAGCAACAAAAAAATTTGAATTTTTTTT
66 CCAGGCCATTGACAGGCCAGC-ACAAAAAAAATTGAATTTTTTTT
* * * *
7194873 AATACTGGTGCCGGCCATTGACAGGCCAGTACCGAA-TTTTTTTAAAAAAACTCGTATTTTGGTG
1 AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTG
* * *
7194937 CC-GTCCATTGACAGGCAAGCACCAAAAAAATTTG-ATTTTTTTT
66 CCAGGCCATTGACAGGCCAGCA-CAAAAAAAATTGAATTTTTTTT
** * * *
7194980 TGTACTTGGTGCCGGCCATTAACAGGCCAGTACCAAATTTTTTTAAAAAAAAACTCGTATTGTGG
1 AATAC-TGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTT-TAAAAAAACTCGTATTCTGG
* *
7195045 TGCCA-ACCATTGACAGGCCAGCACAAAAAAAAATTAAATTTTTTTT
64 TGCCAGGCCATTGACAGGCCAGCAC-AAAAAAAATTGAATTTTTTTT
* * * * * *
7195091 AATACTGGTGTCGACCATTGACTGGCTAGCACCAAATTTTTTTTTAAAAAACTCGTATTCTGGTG
1 AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTG
* **
7195156 -CAGGCAATTGACAGGCCAGCATCAAAAAATTTTGAATTTTTTTT
66 CCAGGCCATTGACAGGCCAGCA-CAAAAAAAATTGAATTTTTTTT
7195200 AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAA
1 AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAA
7195236 AAAATTTGAA
Statistics
Matches: 308, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
107 39 0.13
108 86 0.28
109 91 0.30
110 80 0.26
111 12 0.04
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (109 bp):
AATACTGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTTTAAAAAAACTCGTATTCTGGTG
CCAGGCCATTGACAGGCCAGCACAAAAAAAATTGAATTTTTTTT
Found at i:7195263 original size:55 final size:54
Alignment explanation
Indices: 7194835--7195289 Score: 225
Period size: 54 Copynumber: 8.4 Consensus size: 54
7194825 AGTGTCGGTT
* *
7194835 ATTGACAAGCCAGCAACAAAAAAATTTGAATTTTTTTTAATACTGGTGCCGGCC
1 ATTGACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAATACTGGTGCCGGCC
* * **** * **** ** ** *
7194889 ATTGACAGGCCAGTACCGAATTTTTTTAAAAAAACTCGT-ATTTTGGTGCCGTCC
1 ATTGACAGGCCAGCACCAAAAAAATTT-GAATTTTTTTTAATACTGGTGCCGGCC
* **
7194943 ATTGACAGGCAAGCACCAAAAAAATTTG-ATTTTTTTTTGTACTTGGTGCCGGCC
1 ATTGACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAATAC-TGGTGCCGGCC
* * **** * **** ** ** **
7194997 ATTAACAGGCCAGTACCAAATTTTTTTAAAAAAAAACTCGT-ATTGTGGTGCCAACC
1 ATTGACAGGCCAGCACCAAAAAAATTT---GAATTTTTTTTAATACTGGTGCCGGCC
* * * * *
7195053 ATTGACAGGCCAGCACAAAAAAAAATTAAATTTTTTTTAATACTGGTGTCGACC
1 ATTGACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAATACTGGTGCCGGCC
* * **** * **** ** * * *
7195107 ATTGACTGGCTAGCACCAAATTTTTTTTTAAAAAACTCGT-ATTCTGGTGCAGGCA
1 ATTGACAGGCCAGCACCAAA--AAAATTTGAATTTTTTTTAATACTGGTGCCGGCC
* *
7195162 ATTGACAGGCCAGCATCAAAAAATTTTGAATTTTTTTTAATACTGGTGCCGGCC
1 ATTGACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAATACTGGTGCCGGCC
* *
7195216 ATTAACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAAATACTGGTGCCGACC
1 ATTGACAGGCCAGCACCAAAAAAATTTGAATTTTTTTT-AATACTGGTGCCGGCC
* *
7195271 ATTGACATGTCAGCACCAA
1 ATTGACAGGCCAGCACCAA
7195290 CATTTTTTTT
Statistics
Matches: 274, Mismatches: 115, Indels: 23
0.67 0.28 0.06
Matches are distributed among these distances:
52 3 0.01
53 14 0.05
54 156 0.57
55 62 0.23
56 35 0.13
57 1 0.00
58 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (54 bp):
ATTGACAGGCCAGCACCAAAAAAATTTGAATTTTTTTTAATACTGGTGCCGGCC
Done.