Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 250 of 253
Found at i:80165506 original size:18 final size:19
Alignment explanation
Indices: 80165473--80165511 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
80165463 GTAAAAAAGA
*
80165473 TAAATTTTTTTATAATTTT
1 TAAATATTTTTATAATTTT
80165492 TAAATATTTTT-TAATTTT
1 TAAATATTTTTATAATTTT
80165510 TA
1 TA
80165512 CCACATGGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TAAATATTTTTATAATTTT
Found at i:80176701 original size:22 final size:22
Alignment explanation
Indices: 80176660--80176700 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
80176650 CCGAAATTTC
*
80176660 AAAATTTAGAAAATTAAAAATT
1 AAAATTGAGAAAATTAAAAATT
80176682 AAAATTGAG-AAATTAAAAA
1 AAAATTGAGAAAATTAAAAA
80176701 AATAGGAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (22 bp):
AAAATTGAGAAAATTAAAAATT
Found at i:80177746 original size:28 final size:28
Alignment explanation
Indices: 80177712--80177766 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
80177702 TCCTCAAAAA
* * *
80177712 TTTTTTAAAAATTGATTAGATCCCTTAT
1 TTTTTTAAAAATTCATTAAACCCCTTAT
80177740 TTTTTTAAAAATTCATTAAACCCCTTA
1 TTTTTTAAAAATTCATTAAACCCCTTA
80177767 AAAATTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.47
Consensus pattern (28 bp):
TTTTTTAAAAATTCATTAAACCCCTTAT
Found at i:80188718 original size:13 final size:13
Alignment explanation
Indices: 80188700--80188725 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80188690 ACCTGGTCAC
80188700 CTACTTTTATAAT
1 CTACTTTTATAAT
80188713 CTACTTTTATAAT
1 CTACTTTTATAAT
80188726 GTTATTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
CTACTTTTATAAT
Found at i:80197757 original size:28 final size:29
Alignment explanation
Indices: 80197726--80197789 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
80197716 TTTAATAAGC
*
80197726 TTTTAAAATTTGGA-ATATTTTTTTTATT
1 TTTTAAAATTTGGAGATATTTTGTTTATT
*
80197754 TTTT-AAATTTTGAGATATTTTGTTTATT
1 TTTTAAAATTTGGAGATATTTTGTTTATT
*
80197782 TTTAAAAA
1 TTTTAAAA
80197790 AATTTAACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 8 0.26
28 20 0.65
29 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (29 bp):
TTTTAAAATTTGGAGATATTTTGTTTATT
Found at i:80206970 original size:23 final size:23
Alignment explanation
Indices: 80206943--80206989 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80206933 TAAATACATC
80206943 AGTTCAAATTAGTTTTTTGATTT
1 AGTTCAAATTAGTTTTTTGATTT
80206966 AGTTCAAATTAGTTTTTTGATTT
1 AGTTCAAATTAGTTTTTTGATTT
80206989 A
1 A
80206990 CTCGGTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.55
Consensus pattern (23 bp):
AGTTCAAATTAGTTTTTTGATTT
Found at i:80209157 original size:109 final size:108
Alignment explanation
Indices: 80209026--80209236 Score: 377
Period size: 109 Copynumber: 1.9 Consensus size: 108
80209016 AGATGAATTT
*
80209026 CTCCCCCCCCCCCTCTTTGTAGATGATTGAATTAGAGTGAAATCAACCTTGTATGGTGGATTATA
1 CTCCCCCCCCCCCTCTTTGTAGATGATTGAATTAGAGTGAAATCAACCTTGTATGATGGATTATA
80209091 TTATGTTATGTTCCTCCTTTCTCAGTATGGTTACCATCTCTCC
66 TTATGTTATGTTCCTCCTTTCTCAGTATGGTTACCATCTCTCC
* *
80209134 CTCCTCCCCCCCCTTTTTTGTAGATGATTGAATTAGAGTGAAATCAACCTTGTATGATGGATTAT
1 CTCC-CCCCCCCCCTCTTTGTAGATGATTGAATTAGAGTGAAATCAACCTTGTATGATGGATTAT
*
80209199 ATTATGTTATTTTCCTCCTTTCTCAGTATGGTTACCAT
65 ATTATGTTATGTTCCTCCTTTCTCAGTATGGTTACCAT
80209237 GATGATGGTA
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
108 4 0.04
109 94 0.96
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (108 bp):
CTCCCCCCCCCCCTCTTTGTAGATGATTGAATTAGAGTGAAATCAACCTTGTATGATGGATTATA
TTATGTTATGTTCCTCCTTTCTCAGTATGGTTACCATCTCTCC
Found at i:80213891 original size:28 final size:28
Alignment explanation
Indices: 80213851--80213906 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
80213841 TCTTCATTCA
80213851 TTTCATTTTAAGTGATAGAAGTAAAAGG
1 TTTCATTTTAAGTGATAGAAGTAAAAGG
80213879 TTTCATTTTAAGTGATAGAAGTAAAAGG
1 TTTCATTTTAAGTGATAGAAGTAAAAGG
80213907 ATTTGGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.21, T:0.36
Consensus pattern (28 bp):
TTTCATTTTAAGTGATAGAAGTAAAAGG
Found at i:80215326 original size:24 final size:24
Alignment explanation
Indices: 80215299--80215348 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
80215289 CTTACTAATC
* *
80215299 GAACAATTCCAAACTACAACTGAG
1 GAACAATTCCAAACCACAACCGAG
80215323 GAACAATTCCAAACCACAACCGAG
1 GAACAATTCCAAACCACAACCGAG
80215347 GA
1 GA
80215349 TACGGGTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.28, G:0.14, T:0.12
Consensus pattern (24 bp):
GAACAATTCCAAACCACAACCGAG
Found at i:80216184 original size:27 final size:28
Alignment explanation
Indices: 80216149--80216208 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
80216139 AAAAAATATC
**
80216149 TTTTGGGGGCTAGAATTGAATTTTAATT
1 TTTTGGGGGCTAGAATTGAATAGTAATT
*
80216177 TTTTGGGGGTTAGAATTGAATAGTAATT
1 TTTTGGGGGCTAGAATTGAATAGTAATT
80216205 TTTT
1 TTTT
80216209 AGGTCAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (28 bp):
TTTTGGGGGCTAGAATTGAATAGTAATT
Found at i:80216724 original size:10 final size:11
Alignment explanation
Indices: 80216697--80216721 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80216687 TTAAAATATT
80216697 AATTATAGAAA
1 AATTATAGAAA
80216708 AATTATAGAAA
1 AATTATAGAAA
80216719 AAT
1 AAT
80216722 ATAAAATCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (11 bp):
AATTATAGAAA
Found at i:80218952 original size:137 final size:137
Alignment explanation
Indices: 80218703--80218973 Score: 515
Period size: 137 Copynumber: 2.0 Consensus size: 137
80218693 ATATTTGGGG
80218703 CAATGCAAGGAAACTTAGTGGGAAAACCATGAAGAACATCTAGAGCGTCAACGAAAATCATGAAG
1 CAATGCAAGGAAACTTAGTGGGAAAACCATGAAGAACATCTAGAGCGTCAACGAAAATCATGAAG
* *
80218768 AAAACATCACCTCCGAAATATGCCGCCCTTTTAATTTCTTGGCAGCCATCAGACACCTTCGAATC
66 AAAACACCACCTCCGAAATATGCCGCCCTTTTAATTTCTTGGCAGCCATCAGACACCTTCAAATC
80218833 AAAGGGA
131 AAAGGGA
80218840 CAATGCAAGGAAACTTAGTGGGAAAACCATGAAGAACATCTAGAGCGTCAACGAAAATCATGAAG
1 CAATGCAAGGAAACTTAGTGGGAAAACCATGAAGAACATCTAGAGCGTCAACGAAAATCATGAAG
*
80218905 AAAACACCACCTCCGAAATATGCCGCCCTTTTAATTTCTTGGTAGCCATCAGACACCTTCAAATC
66 AAAACACCACCTCCGAAATATGCCGCCCTTTTAATTTCTTGGCAGCCATCAGACACCTTCAAATC
80218970 AAAG
131 AAAG
80218974 AAAATTCTAG
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 131 1.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (137 bp):
CAATGCAAGGAAACTTAGTGGGAAAACCATGAAGAACATCTAGAGCGTCAACGAAAATCATGAAG
AAAACACCACCTCCGAAATATGCCGCCCTTTTAATTTCTTGGCAGCCATCAGACACCTTCAAATC
AAAGGGA
Found at i:80225842 original size:15 final size:15
Alignment explanation
Indices: 80225819--80225849 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80225809 CATATATATA
*
80225819 TAAATATATTTATTT
1 TAAAAATATTTATTT
80225834 TAAAAATATTTATTT
1 TAAAAATATTTATTT
80225849 T
1 T
80225850 TTAAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TAAAAATATTTATTT
Found at i:80236338 original size:26 final size:26
Alignment explanation
Indices: 80236308--80236360 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
80236298 TCGTGGAGTG
80236308 ATAGAATTATTTTTCGTAGAAACGAC
1 ATAGAATTATTTTTCGTAGAAACGAC
*
80236334 ATAGAATTGTTTTTCGTAGAAACGAC
1 ATAGAATTATTTTTCGTAGAAACGAC
80236360 A
1 A
80236361 GCTCAATGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (26 bp):
ATAGAATTATTTTTCGTAGAAACGAC
Found at i:80242052 original size:29 final size:30
Alignment explanation
Indices: 80242004--80242061 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
80241994 ATAAATTTAA
* *
80242004 AATTTAGTCTTTATACTTTT-ATTTTTAGG
1 AATTTAATCTTTATAATTTTAATTTTTAGG
*
80242033 AATTTAATCTTTCTAATTTTCAATTTTTA
1 AATTTAATCTTTATAATTTT-AATTTTTA
80242062 AAATTCAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 17 0.71
31 7 0.29
ACGTcount: A:0.28, C:0.09, G:0.05, T:0.59
Consensus pattern (30 bp):
AATTTAATCTTTATAATTTTAATTTTTAGG
Found at i:80242207 original size:12 final size:13
Alignment explanation
Indices: 80242185--80242213 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
80242175 ATGTCACACT
80242185 AAAAAATTTTAAC
1 AAAAAATTTTAAC
80242198 AAAAAA-TTTAAC
1 AAAAAATTTTAAC
80242210 AAAA
1 AAAA
80242214 TTAACAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAAATTTTAAC
Found at i:80252610 original size:10 final size:10
Alignment explanation
Indices: 80252595--80252625 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
80252585 TCTGGTTTTT
80252595 GTTGATGAAA
1 GTTGATGAAA
*
80252605 GTTGATGGAA
1 GTTGATGAAA
80252615 GTTGATGAAA
1 GTTGATGAAA
80252625 G
1 G
80252626 AGAATGGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (10 bp):
GTTGATGAAA
Found at i:80253170 original size:9 final size:9
Alignment explanation
Indices: 80253157--80253207 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
80253147 GTCACCTCCT
80253157 TCACCATCA
1 TCACCATCA
*
80253166 ACACCATCA
1 TCACCATCA
*
80253175 TCATCATCA
1 TCACCATCA
*
80253184 TCATCATCA
1 TCACCATCA
*
80253193 TCATCATCA
1 TCACCATCA
80253202 TCACCA
1 TCACCA
80253208 CCACCTTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.25
Consensus pattern (9 bp):
TCACCATCA
Found at i:80253178 original size:3 final size:3
Alignment explanation
Indices: 80253170--80253204 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
80253160 CCATCAACAC
80253170 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
80253205 CCACCACCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:80253223 original size:3 final size:3
Alignment explanation
Indices: 80253217--80253246 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
80253207 ACCACCTTCA
*
80253217 CCT CCT CCT CCT CCT TCT CCT CCT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
80253247 GAGGAACAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
CCT
Found at i:80253358 original size:39 final size:39
Alignment explanation
Indices: 80253314--80253393 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
80253304 TCACCGTCAC
80253314 CATCACCGCCACCTCCTAAG-AAACAATCATCACCACCTT
1 CATCACCGCCACCTCCTAAGCAAA-AATCATCACCACCTT
* *
80253353 CATCACCTCCTCCTCCTAAGCAAAAATCATCACCACCTT
1 CATCACCGCCACCTCCTAAGCAAAAATCATCACCACCTT
80253392 CA
1 CA
80253394 GATAGCTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 35 0.92
40 3 0.08
ACGTcount: A:0.33, C:0.44, G:0.04, T:0.20
Consensus pattern (39 bp):
CATCACCGCCACCTCCTAAGCAAAAATCATCACCACCTT
Found at i:80256061 original size:15 final size:15
Alignment explanation
Indices: 80256041--80256071 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80256031 GAGAAGAGAC
80256041 TAAACTATTGGTAGT
1 TAAACTATTGGTAGT
80256056 TAAACTATTGGTAGT
1 TAAACTATTGGTAGT
80256071 T
1 T
80256072 TTAGGCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (15 bp):
TAAACTATTGGTAGT
Found at i:80262318 original size:33 final size:33
Alignment explanation
Indices: 80262276--80262343 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
80262266 TTCAATATTT
* *
80262276 CCATTTCCATGGA-TTCTAAATCCTCTAAGATCC
1 CCATTTCCATGCACTT-TAAATCCTCTAACATCC
*
80262309 CCATTTCCATGCACTTTAAATCCTTTAACATCC
1 CCATTTCCATGCACTTTAAATCCTCTAACATCC
80262342 CC
1 CC
80262344 GTGCTTTCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 29 0.94
34 2 0.06
ACGTcount: A:0.26, C:0.34, G:0.06, T:0.34
Consensus pattern (33 bp):
CCATTTCCATGCACTTTAAATCCTCTAACATCC
Found at i:80265146 original size:22 final size:22
Alignment explanation
Indices: 80265108--80265149 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80265098 TTACTTTATG
*
80265108 AGTTCATTTAATTAAAAATCAT
1 AGTTCATTTAATAAAAAATCAT
80265130 AGTT-ATTTGAATAAAAAATC
1 AGTTCATTT-AATAAAAAATC
80265150 TTATTTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (22 bp):
AGTTCATTTAATAAAAAATCAT
Found at i:80266217 original size:12 final size:13
Alignment explanation
Indices: 80266200--80266228 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
80266190 ATTAACCGAA
80266200 ATTTATATATA-T
1 ATTTATATATATT
80266212 ATTTATATATATT
1 ATTTATATATATT
80266225 ATTT
1 ATTT
80266229 TTTGTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTATATATATT
Found at i:80268969 original size:14 final size:15
Alignment explanation
Indices: 80268946--80268987 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
80268936 TAAAAAAAAT
80268946 AGAAGAAAAGAAAAGA
1 AGAAG-AAAGAAAAGA
*
80268962 A-AAGAAAGGAAAGA
1 AGAAGAAAGAAAAGA
80268976 AGAAGAAGAGAA
1 AGAAGAA-AGAA
80268988 GGAAATCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.45
15 8 0.36
16 4 0.18
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AGAAGAAAGAAAAGA
Found at i:80268974 original size:19 final size:19
Alignment explanation
Indices: 80268946--80268992 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
80268936 TAAAAAAAAT
*
80268946 AGAAGAAAAGAA-AAGAAA
1 AGAAGGAAAGAAGAAGAAA
*
80268964 AGAAAGGAAAGAAGAAGAAG
1 AG-AAGGAAAGAAGAAGAAA
80268984 AGAAGGAAA
1 AGAAGGAAA
80268993 TCAAATACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 16 0.64
20 7 0.28
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AGAAGGAAAGAAGAAGAAA
Found at i:80273508 original size:257 final size:257
Alignment explanation
Indices: 80273052--80273535 Score: 835
Period size: 257 Copynumber: 1.9 Consensus size: 257
80273042 TGGCGTCGAA
*
80273052 GGAAAAACTGCGAGACGATGCCGGATCTTCTTCTCGACCTCTGTTTAGGTACCCTAATTACTTGC
1 GGAAAAACTGCGAGACGATGCCAGATCTTCTTCTCGACCTCTGTTTAGGTACCCTAATTACTTGC
*
80273117 ATAATTATCATGTTTAAATATTACTTGAATTGTTTGTTTAAAAAGCATGCGCCGAATCGTTTGCT
66 ATAATTATCATGTTTAAATATTACTTGAATTGTTTGTTTAAAAAGCATGCACCGAATCGTTTGCT
* * * *
80273182 TGCTTGAATTCTTTATTTTCCCCCTTAGTTTAAGTGATTTTGAATCGGTCTGGTTAATGATAGAA
131 TGCTTGAATTCTTTATTTTCCCCCTTAATATAAGTGATTTTGAATCGGTCTGGTGAACGATAGAA
*
80273247 TCATAATAGTTGTAATGATCTTGAATTCTATATGGATCAGTGGCGTCGAAAGAAAAACCAAG
196 TCATAATAGTTGTAAGGATCTTGAATTCTATATGGATCAGTGGCGTCGAAAGAAAAACCAAG
*
80273309 GGAAAAACTGCGAGACGATGCCAGATCTTCTTCTCGATCTCTGTTTAGGTACCCTAATTACTTGC
1 GGAAAAACTGCGAGACGATGCCAGATCTTCTTCTCGACCTCTGTTTAGGTACCCTAATTACTTGC
*
80273374 ATGATTATCATGTTTAAATATTACTTGAATTGTTTGTTTAAAAAGCATGCACCGAATCGTTTGCT
66 ATAATTATCATGTTTAAATATTACTTGAATTGTTTGTTTAAAAAGCATGCACCGAATCGTTTGCT
***
80273439 TGCTTGAATTCCTTT-TTTTCTTTCTTAATATAAGTGATTTTGAATCGGTCTGGTGAACGATAGA
131 TGCTTGAATT-CTTTATTTTCCCCCTTAATATAAGTGATTTTGAATCGGTCTGGTGAACGATAGA
*
80273503 ATCATAGTAGTTGTAAGGATCTTGAATTCTATA
195 ATCATAATAGTTGTAAGGATCTTGAATTCTATA
80273536 AGGAATATTG
Statistics
Matches: 213, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
257 209 0.98
258 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (257 bp):
GGAAAAACTGCGAGACGATGCCAGATCTTCTTCTCGACCTCTGTTTAGGTACCCTAATTACTTGC
ATAATTATCATGTTTAAATATTACTTGAATTGTTTGTTTAAAAAGCATGCACCGAATCGTTTGCT
TGCTTGAATTCTTTATTTTCCCCCTTAATATAAGTGATTTTGAATCGGTCTGGTGAACGATAGAA
TCATAATAGTTGTAAGGATCTTGAATTCTATATGGATCAGTGGCGTCGAAAGAAAAACCAAG
Found at i:80280914 original size:18 final size:17
Alignment explanation
Indices: 80280881--80280914 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
80280871 TTATATTTTT
80280881 AAATCTAAAAGTAAAAA
1 AAATCTAAAAGTAAAAA
80280898 AAATCATAAAA-TAAAAA
1 AAATC-TAAAAGTAAAAA
80280915 TAAAGAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.18
Consensus pattern (17 bp):
AAATCTAAAAGTAAAAA
Found at i:80281206 original size:51 final size:52
Alignment explanation
Indices: 80281146--80281252 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 52
80281136 CTTCTTGTGA
* * *
80281146 ATTTTGGTCGGGAATTCTTTA-TTTATTGAAAAAGAGTTCTTTCAGGGGTAC
1 ATTTTGGTCGGGAATTCTTTATTTTACTGAAAAAGAGTTATTGCAGGGGTAC
* * *
80281197 ATTTTGGTCGGGATTTCTTTATTTTACTGAAAAAGGGTTATTGCAGGGGTCC
1 ATTTTGGTCGGGAATTCTTTATTTTACTGAAAAAGAGTTATTGCAGGGGTAC
80281249 ATTT
1 ATTT
80281253 ACATGCCACA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
51 20 0.41
52 29 0.59
ACGTcount: A:0.23, C:0.10, G:0.24, T:0.42
Consensus pattern (52 bp):
ATTTTGGTCGGGAATTCTTTATTTTACTGAAAAAGAGTTATTGCAGGGGTAC
Found at i:80281714 original size:20 final size:20
Alignment explanation
Indices: 80281689--80281731 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
80281679 ATGTTAAATT
80281689 TATTTTTTATTAATAAAAAA
1 TATTTTTTATTAATAAAAAA
80281709 TATTTTTTATTAATAAAAAA
1 TATTTTTTATTAATAAAAAA
80281729 TAT
1 TAT
80281732 GATAAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTTTTTATTAATAAAAAA
Found at i:80287192 original size:30 final size:30
Alignment explanation
Indices: 80287145--80287288 Score: 173
Period size: 30 Copynumber: 4.8 Consensus size: 30
80287135 ACTTTTCTCA
*
80287145 ACTAGCCAC-CCTTTTCCACCACCAACTCC
1 ACTAGCCACACTTTTTCCACCACCAACTCC
*
80287174 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACTTTTTCCACCACCAACTCC
* *
80287204 ACTAGCCACACCTTTTCCACCACCAAATCC
1 ACTAGCCACACTTTTTCCACCACCAACTCC
** ** *
80287234 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTTTTTCCACCACCAACTCC
* **
80287264 ACTAACCACACTTGCTCCACCACCA
1 ACTAGCCACACTTTTTCCACCACCA
80287289 CTTGTACCTA
Statistics
Matches: 99, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
29 9 0.09
30 90 0.91
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACTTTTTCCACCACCAACTCC
Found at i:80287971 original size:25 final size:24
Alignment explanation
Indices: 80287921--80287985 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 24
80287911 ACATGTTATC
*
80287921 TTATGTATATA-TCTT-AACTATA
1 TTATGTATATATTTTTAAACTATA
80287943 TTATGTATATATTTTTAACACTATA
1 TTATGTATATATTTTTAA-ACTATA
*
80287968 TTATGTACATATTTTTAA
1 TTATGTATATATTTTTAA
80287986 TATTATCACG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 11 0.29
23 3 0.08
24 1 0.03
25 23 0.61
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (24 bp):
TTATGTATATATTTTTAAACTATA
Found at i:80288152 original size:8 final size:7
Alignment explanation
Indices: 80288141--80288174 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
80288131 TATTATTCTA
80288141 ATATTTT
1 ATATTTT
80288148 GATATTTT
1 -ATATTTT
80288156 AATATTTT
1 -ATATTTT
80288164 ATATTTT
1 ATATTTT
80288171 ATAT
1 ATAT
80288175 ATTTTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (7 bp):
ATATTTT
Found at i:80288169 original size:7 final size:7
Alignment explanation
Indices: 80288095--80288174 Score: 51
Period size: 7 Copynumber: 11.1 Consensus size: 7
80288085 ACATCTTTTT
*
80288095 TTTTCTA
1 TTTTATA
80288102 TTTTAT-
1 TTTTATA
80288108 TTTTAT-
1 TTTTATA
80288114 TTTTCA-A
1 TTTT-ATA
*
80288121 TATTA-A
1 TTTTATA
80288127 TTATTATTA
1 TT-TTA-TA
*
80288136 TTCTAATA
1 TT-TTATA
80288144 TTTTGATA
1 TTTT-ATA
80288152 TTTTAATA
1 TTTT-ATA
80288160 TTTTATA
1 TTTTATA
80288167 TTTTATA
1 TTTTATA
80288174 T
1 T
80288175 ATTTTATTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
6 13 0.22
7 24 0.40
8 18 0.30
9 5 0.08
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (7 bp):
TTTTATA
Found at i:80288176 original size:16 final size:15
Alignment explanation
Indices: 80288134--80288181 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80288124 TAATTATTAT
*
80288134 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
80288150 TATTTTAATATTTTA
1 TATTTTAATATTTTA
80288165 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
80288181 T
1 T
80288182 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:80300267 original size:73 final size:72
Alignment explanation
Indices: 80300089--80300271 Score: 231
Period size: 72 Copynumber: 2.5 Consensus size: 72
80300079 CTTTTCAAGG
* * * ** * * *
80300089 AAAATCAAATCATTATTGCGAGAGATGAGTTGAGCCCCAAGACACTTTGAGATACTTTTAATTTT
1 AAAATCAACTCA-TATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTC
*
80300154 TATTTTTC
65 TATTTGTC
* * *
80300162 AAAATCAACTCATATTACTAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCT
*
80300227 GTTTGTC
66 ATTTGTC
80300234 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
80300272 GGCTCACATG
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
72 48 0.51
73 46 0.49
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATAATTTCAATTTCT
ATTTGTC
Found at i:80300309 original size:14 final size:14
Alignment explanation
Indices: 80300290--80300318 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80300280 TGCTGAGGTC
80300290 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80300304 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80300318 T
1 T
80300319 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:80300505 original size:73 final size:73
Alignment explanation
Indices: 80300326--80300753 Score: 351
Period size: 73 Copynumber: 5.5 Consensus size: 73
80300316 GTTCGTAAAA
* *
80300326 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
80300391 TTGTTT-TCC
65 CTGTTTGT-C
* *
80300400 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTAAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
80300465 TGTTTGTC
66 TGTTTGTC
* * * *
80300473 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
*
80300538 TCTGTTCTTCAATTTC
64 TCTG---TT---TGTC
** * * * * * * *
80300554 TATTCGTAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAG
1 -A-----AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCGGGACACGCTGAG
* *
80300616 GTATTTTTAAATTTCTGTTTTTC
52 GTA-TTTTCAATTTCTGTTTGTC
* * *
80300639 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGATACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
80300704 TCTGTTTGTC
64 TCTGTTTGTC
* *
80300714 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
80300754 CTCATATGCT
Statistics
Matches: 284, Mismatches: 42, Indels: 57
0.74 0.11 0.15
Matches are distributed among these distances:
73 90 0.32
74 53 0.19
75 38 0.13
76 17 0.06
78 2 0.01
81 20 0.07
82 4 0.01
83 1 0.00
84 4 0.01
85 5 0.02
86 4 0.01
87 17 0.06
88 2 0.01
90 10 0.04
91 12 0.04
92 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:80300675 original size:76 final size:74
Alignment explanation
Indices: 80300563--80300790 Score: 280
Period size: 76 Copynumber: 3.0 Consensus size: 74
80300553 CTATTCGTAA
80300563 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACACTGAGGTATTTTT-AAT
80300628 TTCTGTTTTTC
64 TTCTGTTTTTC
* * * * *
80300639 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGATACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACACTGAGGTATTTTTAATT
*
80300704 TCTGTTTGTC
65 TCTGTTTTTC
* * * * *
80300714 --AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCATATGCTGAGGTCTTTTTAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACA--CTGAGGTATTTTTAA
*
80300777 TTTCTGCTTTTC
63 TTTCTGTTTTTC
80300789 AA
1 AA
80300791 TTTCTATTTT
Statistics
Matches: 128, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
72 2 0.02
73 36 0.28
75 35 0.27
76 55 0.43
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACACTGAGGTATTTTTAATTT
CTGTTTTTC
Found at i:80300745 original size:241 final size:238
Alignment explanation
Indices: 80300089--80300798 Score: 1136
Period size: 239 Copynumber: 3.0 Consensus size: 238
80300079 CTTTTCAAGG
* * * * ** * *
80300089 AAAATCAAATCATTATTGCGAGAGATGAGTTGAGCCCCAAGACACTTTGAGATACTTTT-AATTT
1 AAAATCAACTCA-TATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAATTT
* * * **
80300153 TTATTTTTC-AAAATCAACTCATATTACTAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAAT
65 TTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
*
80300217 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
130 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
*
80300282 CTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAA
195 CTGAGGTCTTTTCAATTTCTG-TTTTCAATTTCTATTCGTAAAAA
*
80300327 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAATTTT
* *
80300392 TGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTAAGGTAATT
66 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
80300457 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
131 TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
80300522 TGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTATTCGTAAAAA
196 TGAGGTCTTTTCAATTTCTGTT-TTCAATTTCTATTCGTAAAAA
*
80300566 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAATTTT
* *
80300631 TGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGATACGCTGAGGTAA
66 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
* *
80300696 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCATAT
129 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
*
80300761 GCTGAGGTCTTTTTAATTTCTGCTTTTCAATTTCTATT
194 GCTGAGGTCTTTTCAATTTCTG-TTTTCAATTTCTATT
80300799 TTTTCAATTT
Statistics
Matches: 440, Mismatches: 26, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
237 39 0.09
238 25 0.06
239 225 0.51
241 149 0.34
242 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (238 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTTAAATTTT
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
TCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGC
TGAGGTCTTTTCAATTTCTGTTTTCAATTTCTATTCGTAAAAA
Found at i:80300792 original size:14 final size:15
Alignment explanation
Indices: 80300769--80300811 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
80300759 ATGCTGAGGT
*
80300769 CTTTTTAATTTCT-G
1 CTTTTCAATTTCTAG
*
80300783 CTTTTCAATTTCTAT
1 CTTTTCAATTTCTAG
*
80300798 TTTTTCAATTTCTA
1 CTTTTCAATTTCTA
80300812 TTTTTCAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.19, C:0.16, G:0.02, T:0.63
Consensus pattern (15 bp):
CTTTTCAATTTCTAG
Found at i:80300804 original size:15 final size:15
Alignment explanation
Indices: 80300784--80300816 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
80300774 TAATTTCTGC
80300784 TTTTCAATTTCTATT
1 TTTTCAATTTCTATT
80300799 TTTTCAATTTCTATT
1 TTTTCAATTTCTATT
80300814 TTT
1 TTT
80300817 CAAAAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTCTATT
Found at i:80300815 original size:14 final size:14
Alignment explanation
Indices: 80300770--80300819 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
80300760 TGCTGAGGTC
*
80300770 TTTTT-AATTTCTG
1 TTTTTCAATTTCTA
*
80300783 CTTTTCAATTTCTA
1 TTTTTCAATTTCTA
80300797 TTTTTTCAATTTCTA
1 -TTTTTCAATTTCTA
80300812 TTTTTCAA
1 TTTTTCAA
80300820 AAATCAACTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 4 0.12
14 15 0.47
15 13 0.41
ACGTcount: A:0.20, C:0.14, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTA
Found at i:80301599 original size:30 final size:30
Alignment explanation
Indices: 80301563--80301719 Score: 264
Period size: 30 Copynumber: 5.3 Consensus size: 30
80301553 ACTTTTCTCA
80301563 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
80301593 ACTAGCCACT-CTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
80301622 ACTAGCCACACCTTTT-CACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
80301651 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
80301681 ACTAGCCACACCTTTTCCACCACCAAATCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
80301711 ACTAGCCAC
1 ACTAGCCAC
80301720 ACTTGCTCAA
Statistics
Matches: 119, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
29 55 0.46
30 64 0.54
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:80301667 original size:59 final size:59
Alignment explanation
Indices: 80301563--80301719 Score: 280
Period size: 59 Copynumber: 2.7 Consensus size: 59
80301553 ACTTTTCTCA
*
80301563 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACTCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTCCACCACCAACTCC
80301622 ACTAGCCACACCTTTT-CACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTC-TTTTCCACCACCAACTCC
*
80301681 ACTAGCCACACCTTTTCCACCACCAAATCCACTAGCCAC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCAC
80301720 ACTTGCTCAA
Statistics
Matches: 94, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
58 24 0.26
59 49 0.52
60 21 0.22
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (59 bp):
ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTCCACCACCAACTCC
Found at i:80302329 original size:24 final size:24
Alignment explanation
Indices: 80302293--80302358 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
80302283 ATTTAAATTC
** *
80302293 TATATTACGTATATATATTTTATA
1 TATATTATTTATATATATTTAATA
*
80302317 CTAT-TTATTTATATATCTTTAATA
1 -TATATTATTTATATATATTTAATA
*
80302341 TTTATTATTTATATATAT
1 TATATTATTTATATATAT
80302359 ATTTTTCTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 2 0.06
24 29 0.85
25 3 0.09
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (24 bp):
TATATTATTTATATATATTTAATA
Found at i:80302436 original size:24 final size:23
Alignment explanation
Indices: 80302392--80302437 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
80302382 TAATATCTTA
80302392 ACTATATTATGTATATTTTTAAC
1 ACTATATTATGTATATTTTTAAC
80302415 ACTATA-TATGTACATATTTTTAA
1 ACTATATTATGT--ATATTTTTAA
80302438 TATTATCACG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 6 0.29
24 10 0.48
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (23 bp):
ACTATATTATGTATATTTTTAAC
Found at i:80302473 original size:22 final size:21
Alignment explanation
Indices: 80302417--80302473 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
80302407 TTTTTAACAC
80302417 TATATATGTACATATTTTTAA
1 TATATATGTACATATTTTTAA
* * **
80302438 TAT-TAT-CACGTATTTATTTT
1 TATATATGTACATATTT-TTAA
80302458 TATATATGTACATATT
1 TATATATGTACATATT
80302474 GATGTAGTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
19 7 0.26
20 8 0.30
21 6 0.22
22 6 0.22
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.54
Consensus pattern (21 bp):
TATATATGTACATATTTTTAA
Found at i:80302607 original size:8 final size:8
Alignment explanation
Indices: 80302594--80302630 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
80302584 TATTGATTCC
80302594 TAATATTT
1 TAATATTT
80302602 TAATATTT
1 TAATATTT
80302610 T-ATATTT
1 TAATATTT
80302617 T-ATATTT
1 TAATATTT
*
80302624 TATTATT
1 TAATATT
80302631 CACATCATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 14 0.52
8 13 0.48
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
TAATATTT
Found at i:80302616 original size:7 final size:7
Alignment explanation
Indices: 80302596--80302626 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
80302586 TTGATTCCTA
80302596 ATATTTT
1 ATATTTT
80302603 AATATTTT
1 -ATATTTT
80302611 ATATTTT
1 ATATTTT
80302618 ATATTTT
1 ATATTTT
80302625 AT
1 AT
80302627 TATTCACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
ATATTTT
Found at i:80303458 original size:14 final size:14
Alignment explanation
Indices: 80303416--80303458 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
80303406 GATAGTGAAA
80303416 TTTATAAATATATT
1 TTTATAAATATATT
* *
80303430 TTCAT--ATAAATT
1 TTTATAAATATATT
80303442 TTTATAAATATATT
1 TTTATAAATATATT
80303456 TTT
1 TTT
80303459 TATGTAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 10 0.43
14 13 0.57
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTATAAATATATT
Found at i:80314503 original size:38 final size:40
Alignment explanation
Indices: 80314459--80314550 Score: 125
Period size: 38 Copynumber: 2.3 Consensus size: 40
80314449 AAAAATTATA
*
80314459 TTTAATAAAATAAAACATTTATTATATTTAT-TTGTG-TT
1 TTTAATAAAATAAAACATTTATTATATTTATGTAGTGTTT
* *
80314497 TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTT
1 TTTAATAAAATAAAACATTTATTATATTTAT-GTAGTGTTT
80314538 TTTAATATAAATA
1 TTTAATA-AAATA
80314551 CTTTTTAATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
38 29 0.63
40 4 0.09
41 9 0.20
42 4 0.09
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (40 bp):
TTTAATAAAATAAAACATTTATTATATTTATGTAGTGTTT
Found at i:80316149 original size:70 final size:70
Alignment explanation
Indices: 80316045--80316177 Score: 248
Period size: 70 Copynumber: 1.9 Consensus size: 70
80316035 AACCGAATCA
* *
80316045 AAAAGTTCGATGGTATTATTATATTTTTGGGTATTTTAATGATAATTATTGTTTTACTAAAATCA
1 AAAAGTTCGATAGTATTATTATATTTTTGAGTATTTTAATGATAATTATTGTTTTACTAAAATCA
80316110 AAATT
66 AAATT
80316115 AAAAGTTCGATAGTATTATTATATTTTTGAGTATTTTAATGATAATTATTGTTTTACTAAAAT
1 AAAAGTTCGATAGTATTATTATATTTTTGAGTATTTTAATGATAATTATTGTTTTACTAAAAT
80316178 AATTGTATGA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (70 bp):
AAAAGTTCGATAGTATTATTATATTTTTGAGTATTTTAATGATAATTATTGTTTTACTAAAATCA
AAATT
Found at i:80317732 original size:10 final size:11
Alignment explanation
Indices: 80317716--80317740 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80317706 TTAATTATAC
80317716 AAAAAAAAAAG
1 AAAAAAAAAAG
80317727 AAAAAAAAAAG
1 AAAAAAAAAAG
80317738 AAA
1 AAA
80317741 GGGTTTGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:80318083 original size:34 final size:35
Alignment explanation
Indices: 80318009--80318083 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
80317999 GGCTAGTTGT
80318009 AATCTTTATAGTTTTTGATGGACCCCGTACATTAA
1 AATCTTTATAGTTTTTGATGGACCCCGTACATTAA
* *
80318044 AATCTTTATAGTTTTTGTTGGACGCC-TA-ATTTAA
1 AATCTTTATAGTTTTTGATGGACCCCGTACA-TTAA
80318078 AATCTT
1 AATCTT
80318084 ATCATTTTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 1 0.03
34 12 0.32
35 24 0.65
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (35 bp):
AATCTTTATAGTTTTTGATGGACCCCGTACATTAA
Found at i:80318935 original size:16 final size:16
Alignment explanation
Indices: 80318914--80318944 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80318904 AACGTTCTGC
*
80318914 ATTTTTTTTTTAAATA
1 ATTTTTTATTTAAATA
80318930 ATTTTTTATTTAAAT
1 ATTTTTTATTTAAAT
80318945 TTTAATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTTTATTTAAATA
Found at i:80318984 original size:20 final size:19
Alignment explanation
Indices: 80318929--80319006 Score: 72
Period size: 20 Copynumber: 4.2 Consensus size: 19
80318919 TTTTTTAAAT
**
80318929 AATTTTTTATTTAAATTTT
1 AATTTTTTATTTAAATTCG
* *
80318948 AA-TTTGTA--TAAACTCG
1 AATTTTTTATTTAAATTCG
80318964 AATTTTTTATGTTAAATTCG
1 AATTTTTTAT-TTAAATTCG
* *
80318984 AATATTTTATTTAAATTTG
1 AATTTTTTATTTAAATTCG
80319003 AATT
1 AATT
80319007 AAATAATAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
16 7 0.15
17 5 0.11
18 5 0.11
19 13 0.28
20 16 0.35
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (19 bp):
AATTTTTTATTTAAATTCG
Found at i:80322513 original size:17 final size:18
Alignment explanation
Indices: 80322493--80322532 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
80322483 TCTAAAATAA
*
80322493 TAAATAAATCTA-AATTT
1 TAAATAAATCTACAAATT
*
80322510 TAAATAAATTTACAAATT
1 TAAATAAATCTACAAATT
80322528 TAAAT
1 TAAAT
80322533 GTTATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAATAAATCTACAAATT
Found at i:80322526 original size:25 final size:24
Alignment explanation
Indices: 80322498--80322550 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
80322488 AATAATAAAT
*
80322498 AAATCTAAATTTTA-AATAAATTTAC
1 AAATCTAAATGTTATAA-AAA-TTAC
*
80322523 AAATTTAAATGTTATAAAAATTAC
1 AAATCTAAATGTTATAAAAATTAC
80322547 AAAT
1 AAAT
80322551 ATTCAACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.32
25 15 0.60
26 2 0.08
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATCTAAATGTTATAAAAATTAC
Found at i:80322531 original size:18 final size:17
Alignment explanation
Indices: 80322483--80322532 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
80322473 AGATTTGGAT
*
80322483 TCTAAAATAATAAATAAA
1 TCTAAAAT-TTAAATAAA
*
80322501 TCTAAATTTTAAATAAA
1 TCTAAAATTTAAATAAA
*
80322518 TTTACAAATTTAAAT
1 TCTA-AAATTTAAAT
80322533 GTTATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
TCTAAAATTTAAATAAA
Found at i:80325154 original size:204 final size:204
Alignment explanation
Indices: 80324741--80325448 Score: 971
Period size: 204 Copynumber: 3.5 Consensus size: 204
80324731 GTTAGTTCTA
* * * * * *
80324741 TTTCTCCTTCTAGATCTAGCTGTTCGTTTCAAAGTTCATCGATATTTCCCTTTTTTTTAGTTTGA
1 TTTCTCCTTCTAGACCTCGTTATTCATTTCAAAGTTCATCGATATTTCCCCTTTTTTTAGTTTGA
* *
80324806 TTTGTATTAGTGTTTCTTTGCTGATTAATTTGTTCAATCTT-TCGTTCTAGATCTCGCTCTTCGT
66 TTTGTATTAGTGTTTCTTTGCTGATTAATTTGTTCAAT-TTCTCGTTCTAGATCTCGCTATTCAT
*
80324870 TTATATTTCCTTTTTTTTAAA--TGATTTATAATAGTATTTCTTTGCTGATTAGTTTGAATTCAT
130 TTATATTTCC-TTTTTTTAAATTTGATTTATAATAGTTTTTCTTTGCTGATTAGTTTGAATTCAT
*
80324933 TTTTAGCTCAC
194 TTTTAGCTCAT
* * * **
80324944 TTTCTCCTTCCAGACCTCGTTATTCATTTCGAAGTTCATCTATATTTCCGGTTTTTTTAGTTTGA
1 TTTCTCCTTCTAGACCTCGTTATTCATTTCAAAGTTCATCGATATTTCCCCTTTTTTTAGTTTGA
* * * *
80325009 -TTGTATTAATGTTTCTTTGCTGATTACTTTGTTCAATTTCTCGTCCTAGGTCTCGCTATTCATT
66 TTTGTATTAGTGTTTCTTTGCTGATTAATTTGTTCAATTTCTCGTTCTAGATCTCGCTATTCATT
80325073 TATATTTCCTTTTTTTAAAATTTGATTTATAATAGTTTTTCTTTGCTGATTAGTTTGAATTCATT
131 TATATTTCCTTTTTTT-AAATTTGATTTATAATAGTTTTTCTTTGCTGATTAGTTTGAATTCATT
*
80325138 TTTAGCTTAT
195 TTTAGCTCAT
* *
80325148 TTTCTCCTTCTAGACCTGGTTATTCATTTCAAAGTTCATCGATATTTCCCCTTTTTTTACTTTGA
1 TTTCTCCTTCTAGACCTCGTTATTCATTTCAAAGTTCATCGATATTTCCCCTTTTTTTAGTTTGA
* * * *
80325213 TTTGAATTAGTGTTTCTTTGCTCATTAATTTGTTCAATTTCTCCTTCTAGATCTCGTTATTCATT
66 TTTGTATTAGTGTTTCTTTGCTGATTAATTTGTTCAATTTCTCGTTCTAGATCTCGCTATTCATT
*
80325278 TATATTTCCTTTTTGTT-AATTTGATTTATAATAGTTTTTCTTTGCTGATTAGTTTGAATTGATT
131 TATATTTCCTTTTT-TTAAATTTGATTTATAATAGTTTTTCTTTGCTGATTAGTTTGAATTCATT
**
80325342 TCGAG-TCAT
195 TTTAGCTCAT
** * * * *
80325351 TTTCTCCTTCTAGACCTCG-TATTGGTTTCGAAGTTCATCAACATTTCCTCTCTTTTTTTAGTTC
1 TTTCTCCTTCTAGACCTCGTTATTCATTTCAAAGTTCATCGATATTTCC-C-CTTTTTTTAGTTT
* * *
80325415 GATTTTTATTGGTGTTTCTTTTCTGATTAATTTG
64 GATTTGTATTAGTGTTTCTTTGCTGATTAATTTG
80325449 AATTGATTTT
Statistics
Matches: 446, Mismatches: 51, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
201 9 0.02
202 91 0.20
203 77 0.17
204 197 0.44
205 70 0.16
206 2 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (204 bp):
TTTCTCCTTCTAGACCTCGTTATTCATTTCAAAGTTCATCGATATTTCCCCTTTTTTTAGTTTGA
TTTGTATTAGTGTTTCTTTGCTGATTAATTTGTTCAATTTCTCGTTCTAGATCTCGCTATTCATT
TATATTTCCTTTTTTTAAATTTGATTTATAATAGTTTTTCTTTGCTGATTAGTTTGAATTCATTT
TTAGCTCAT
Found at i:80325887 original size:235 final size:239
Alignment explanation
Indices: 80325429--80325939 Score: 976
Period size: 235 Copynumber: 2.2 Consensus size: 239
80325419 TTTATTGGTG
**
80325429 TTTCTTTTCTGATTAATTTGAATTGATTTTTAGTTCAATTTCTCGCTCTAGATCTTGCTATTCAT
1 TTTCTTTGGTGATTAATTTGAATTGATTTTTAGTTCAATTTCTCGCTCTAGATCTTGCTATTCAT
80325494 TTCAAAGTTCGTCAATATTTTCTTCTTCTTAAAAAATAAAAATTGATTTGTGTTAGTATTTCTTT
66 TTCAAAGTTCGTCAATATTTTCTTCTTCTTAAAAAATAAAAATTGATTTGTGTTAGTATTTCTTT
80325559 GCTGATAAATTTGAATTTTTTAGTTCAATTTCTCACTCTAGATCTGGCTATTCATTTCAAAGTTC
131 GCTGATAAATTTGAATTTTTTAGTTCAATTTCTCACTCTAGATCTGGCTATTCATTTCAAAGTTC
80325624 ACCATTATATTATTGTCTTTTTTAAAGTTTGATTTGTGTTAGCA
196 ACCATTATATTATTGTCTTTTTTAAAGTTTGATTTGTGTTAGCA
80325668 TTTCTTTGGTGATTAATTTGAATTGATTTTTAGTTCAATTTCTCGCTCTAGATCTTGCTATTCA-
1 TTTCTTTGGTGATTAATTTGAATTGATTTTTAGTTCAATTTCTCGCTCTAGATCTTGCTATTCAT
80325732 TTCAAAGTTCGTCAATA-TTTCTTCTTCTTAAAAAATAAAAATTGATTTGTGTTAGTATTTCTTT
66 TTCAAAGTTCGTCAATATTTTCTTCTTCTTAAAAAATAAAAATTGATTTGTGTTAGTATTTCTTT
80325796 GCTGATAAATTTGAA-TTTTTAGTTC-ATTTCTCACTCTAGATCTGGCTATTCATTTCAAAGTTC
131 GCTGATAAATTTGAATTTTTTAGTTCAATTTCTCACTCTAGATCTGGCTATTCATTTCAAAGTTC
80325859 ACCATTATATTATTGTCTTTTTTAAAGTTTGATTTGTGTTAGCA
196 ACCATTATATTATTGTCTTTTTTAAAGTTTGATTTGTGTTAGCA
80325903 TTTCTTTGGTGATTAATTTGAATTGATTTTTAGTTCA
1 TTTCTTTGGTGATTAATTTGAATTGATTTTTAGTTCA
80325940 TTGTGTCCTT
Statistics
Matches: 270, Mismatches: 2, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
235 119 0.44
236 10 0.04
237 62 0.23
238 17 0.06
239 62 0.23
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (239 bp):
TTTCTTTGGTGATTAATTTGAATTGATTTTTAGTTCAATTTCTCGCTCTAGATCTTGCTATTCAT
TTCAAAGTTCGTCAATATTTTCTTCTTCTTAAAAAATAAAAATTGATTTGTGTTAGTATTTCTTT
GCTGATAAATTTGAATTTTTTAGTTCAATTTCTCACTCTAGATCTGGCTATTCATTTCAAAGTTC
ACCATTATATTATTGTCTTTTTTAAAGTTTGATTTGTGTTAGCA
Found at i:80326495 original size:230 final size:231
Alignment explanation
Indices: 80326073--80326501 Score: 546
Period size: 233 Copynumber: 1.9 Consensus size: 231
80326063 ATACTGTTCG
* * * * **
80326073 GCTTTTAGAATTTCTGGATCTAGTATAAAGTTAGAAGGTCCGGTTGCTTTAACTACTCTTAGTTT
1 GCTTTTAGAATTTCTGGACCCAGAATAAAGTTAGAAGATCCGGTTGCTTTAACTACTCACAGTTT
* * *
80326138 TACGAAAAAGAAAATTCTTTCCAGATCAGGAAGTTTTTCAAATTTGAATATGAATTTAAGATATT
66 TACGAAAAAGAAAA-T-TTTACAGATCAAGAAGCTTTTCAAATTTGAATATGAATTTAAGATATT
* * * *
80326203 GATCTTACTTGATTCGTTGATTTATGATTATTGTATGAAATTGAACATTTACTAATTTGTTTGGT
129 GATCCTACTTCATTCATTGATTTATGATTATTCTATGAAATTGAACATTTACTAATTTGTTTGGT
80326268 TGTGTCACTGATTTTAGATCATGGAATCGATTCTATCA
194 TGTGTCACTGATTTTAGATCATGGAATCGATTCTATCA
* * * *
80326306 GCTTTTAGAATTTCTTGACCCAGAATTAAGTTAGAAGAT-TGAGTTGCTTTAATTACTCACAGTT
1 GCTTTTAGAATTTCTGGACCCAGAATAAAGTTAGAAGATCCG-GTTGCTTTAACTACTCACAGTT
** * *
80326370 TTTTG-AAAAGAAAA-TTTACAGATCAAGAA-CTTTTGAAATTTTAATATGAATTTAAGATATTG
65 TTACGAAAAAGAAAATTTTACAGATCAAGAAGCTTTTCAAATTTGAATATGAATTTAAGATATTG
* *
80326432 A-CCTACCTATTCATTCATTGATTTATGATTATTCTATGGAATTGAAC-TTTGAGTAATTTGTTT
130 ATCCTA-C--TTCATTCATTGATTTATGATTATTCTATGAAATTGAACATTT-ACTAATTTGTTT
80326495 GGTTGTG
191 GGTTGTG
80326502 CTGCCGGTTT
Statistics
Matches: 168, Mismatches: 23, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
227 3 0.02
228 32 0.19
229 16 0.10
230 52 0.31
232 10 0.06
233 55 0.33
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.42
Consensus pattern (231 bp):
GCTTTTAGAATTTCTGGACCCAGAATAAAGTTAGAAGATCCGGTTGCTTTAACTACTCACAGTTT
TACGAAAAAGAAAATTTTACAGATCAAGAAGCTTTTCAAATTTGAATATGAATTTAAGATATTGA
TCCTACTTCATTCATTGATTTATGATTATTCTATGAAATTGAACATTTACTAATTTGTTTGGTTG
TGTCACTGATTTTAGATCATGGAATCGATTCTATCA
Found at i:80330507 original size:80 final size:80
Alignment explanation
Indices: 80330410--80330572 Score: 317
Period size: 80 Copynumber: 2.0 Consensus size: 80
80330400 TTACATTTCA
*
80330410 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCGAAGCAAAATCCATCACAAACTAATAGTA
1 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
80330475 AATTTTGACAATCAC
66 AATTTTGACAATCAC
80330490 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
1 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
80330555 AATTTTGACAATCAC
66 AATTTTGACAATCAC
80330570 AAA
1 AAA
80330573 ACAAGATTAC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (80 bp):
AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
AATTTTGACAATCAC
Found at i:80330661 original size:99 final size:99
Alignment explanation
Indices: 80330490--80330695 Score: 403
Period size: 99 Copynumber: 2.1 Consensus size: 99
80330480 TGACAATCAC
80330490 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
1 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
80330555 AATTTTGACAATCACAAAACAAGATTACATTTCA
66 AATTTTGACAATCACAAAACAAGATTACATTTCA
80330589 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
1 AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
*
80330654 AATTTTGACAATCACAAAACAATATTACATTTCA
66 AATTTTGACAATCACAAAACAAGATTACATTTCA
80330688 AAACATCC
1 AAACATCC
80330696 TTTAAAAAAA
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 106 1.00
ACGTcount: A:0.47, C:0.23, G:0.04, T:0.26
Consensus pattern (99 bp):
AAACATCCCTAAAACAACATTACTTCTAAGCTTTTCAAAGCAAAATCCATCACAAACTAATAGTA
AATTTTGACAATCACAAAACAAGATTACATTTCA
Found at i:80339942 original size:37 final size:36
Alignment explanation
Indices: 80339893--80339965 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
80339883 TGATTTATTT
*
80339893 ATTTATAAATAAA-TCATTGCAATAT-ATGTAAAAATA
1 ATTTAAAAATAAATTCATT--AATATAATGTAAAAATA
*
80339929 ATTTAAAATATAAATTTATTAATATAATGTAAAAATA
1 ATTTAAAA-ATAAATTCATTAATATAATGTAAAAATA
80339966 GTTTTTCTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 12 0.38
37 16 0.50
38 4 0.12
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (36 bp):
ATTTAAAAATAAATTCATTAATATAATGTAAAAATA
Found at i:80340080 original size:20 final size:20
Alignment explanation
Indices: 80340037--80340082 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
80340027 CATCTAAACA
* *
80340037 CCAGAAAAGTAAATTATTTT
1 CCAGAAAAATAAATCATTTT
80340057 -CAGAAAAATAAATCATTTT
1 CCAGAAAAATAAATCATTTT
80340076 CCAGAAA
1 CCAGAAA
80340083 TTATTTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (20 bp):
CCAGAAAAATAAATCATTTT
Found at i:80340433 original size:20 final size:20
Alignment explanation
Indices: 80340410--80340450 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
80340400 CTATTTAAGA
*
80340410 ATTCATGAAATTATTATTTT
1 ATTCATAAAATTATTATTTT
80340430 ATTCATAAAATTATTATTTT
1 ATTCATAAAATTATTATTTT
80340450 A
1 A
80340451 ATGAATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTCATAAAATTATTATTTT
Found at i:80340460 original size:20 final size:20
Alignment explanation
Indices: 80340417--80340459 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
80340407 AGAATTCATG
**
80340417 AAATTATTATTTTATTCATA
1 AAATTATTATTTTATGAATA
80340437 AAATTATTATTTTAATGAATA
1 AAATTATTATTTT-ATGAATA
80340458 AA
1 AA
80340460 TGTCATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
AAATTATTATTTTATGAATA
Found at i:80341828 original size:175 final size:176
Alignment explanation
Indices: 80341302--80342016 Score: 897
Period size: 175 Copynumber: 4.1 Consensus size: 176
80341292 CAATTAGCTA
* * * * * * *
80341302 CCACTTGGTGGTTGACGATGTTTTCTTTTTCAACGTTTGTTTGCGAAGCGATTGATCTGCCGACA
1 CCACTTGGTGGTTGGCGACGTTTTCTTTTTGAACATTTGTTCGCGAAGCGATTGGTATGCCGACA
* * * *
80341367 TTTTATTGACAGAGAATGTTTTATGGAGATGTCATGATCAAGTTGATTAATTATTTAGTGGTTTG
66 TTTTATTGACAGAGAATGTTTTATGGA-A-GACATGGTGAAATTGATTAATTATTTAGTGGTTTG
* *
80341432 TCATATTATCATGTTTGCTTTTTACTATGTTAAGAATTTGTTTCTTGC
129 TCATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
* * *
80341480 CCATTTGGTGGTTGGCGACGTTTTCTTTTTGAACATTTG-TCTGCGAAGCGATTGGTATGTCGAA
1 CCACTTGGTGGTTGGCGACGTTTTCTTTTTGAACATTTGTTC-GCGAAGCGATTGGTATGCCGAC
* *
80341544 ATTTTATTGACAGAGAATGTTTTAT-GAAG--AT-GTGGAAATTGATTAATTATTTTGTGGTCTG
65 ATTTTATTGACAGAGAATGTTTTATGGAAGACATGGT-GAAATTGATTAATTATTTAGTGGTTTG
80341605 TCATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
129 TCATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
* * * * * * *
80341653 CCACTTGCTGGTTGGCCACGTTTTCTTTTTGAACATTTGTTCACAAAGTGATTGGTATGTCGATA
1 CCACTTGGTGGTTGGCGACGTTTTCTTTTTGAACATTTGTTCGCGAAGCGATTGGTATGCCGACA
* *
80341718 TTTTATTAACAGCGAATGTTTTAT-GAAGACATGGTGAAATTGATTAATTATTTAGTGGTTTGTC
66 TTTTATTGACAGAGAATGTTTTATGGAAGACATGGTGAAATTGATTAATTATTTAGTGGTTTGTC
80341782 ATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
131 ATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
* * * * * *
80341828 CCACTTGGCGATTGGCAAAGTTTTCTTTTTGAACATTTGTTCGTGAAGTGATTGGTATGCCGACA
1 CCACTTGGTGGTTGGCGACGTTTTCTTTTTGAACATTTGTTCGCGAAGCGATTGGTATGCCGACA
* * * * * * * **
80341893 TTTTATTGACAAAGCATGTTTTGTGGAA-ACGTGGTGAAGTTGATTAATT-TTTCAATGGCTCCT
66 TTTTATTGACAGAGAATGTTTTATGGAAGACATGGTGAAATTGATTAATTATTT-AGTGGTTTGT
* * * * *
80341956 TATATTATAATGTTTGCTTCTTACTATGTTAGGAATTTTTTTTCTGC
130 CATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
*
80342003 CCAGTTGGTGGTTG
1 CCACTTGGTGGTTG
80342017 ATGATATTCG
Statistics
Matches: 472, Mismatches: 57, Indels: 19
0.86 0.10 0.03
Matches are distributed among these distances:
172 1 0.00
173 152 0.32
174 5 0.01
175 228 0.48
176 6 0.01
177 3 0.01
178 77 0.16
ACGTcount: A:0.22, C:0.12, G:0.21, T:0.44
Consensus pattern (176 bp):
CCACTTGGTGGTTGGCGACGTTTTCTTTTTGAACATTTGTTCGCGAAGCGATTGGTATGCCGACA
TTTTATTGACAGAGAATGTTTTATGGAAGACATGGTGAAATTGATTAATTATTTAGTGGTTTGTC
ATATTATCATGTTTGCTTTTTACTATGTTAGGAATTTGTTTCCTGC
Found at i:80342314 original size:25 final size:24
Alignment explanation
Indices: 80342286--80342346 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
80342276 AATCTGAAAC
80342286 CTAAAGCTCTATATAAACCCTAAAT
1 CTAAA-CTCTATATAAACCCTAAAT
* * *
80342311 CTAAAACCCAATATAAATCCTAAAT
1 CT-AAACTCTATATAAACCCTAAAT
80342336 CATAAACTCTA
1 C-TAAACTCTA
80342347 ACCCAAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.26
Consensus pattern (24 bp):
CTAAACTCTATATAAACCCTAAAT
Found at i:80346550 original size:56 final size:56
Alignment explanation
Indices: 80346463--80346576 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
80346453 TATTTCAAAG
*
80346463 TAGGAAAAGGGACCACAAGCAAATAATAATTATTCTAATCATAACTCAATCTCTCA
1 TAGGAAAAGGGACCACAAGCAAATAAAAATTATTCTAATCATAACTCAATCTCTCA
80346519 TAGGAAAAGGGACCACAAGCAAATAAAAATTATTCTAATCATAACTCAATCTCTCA
1 TAGGAAAAGGGACCACAAGCAAATAAAAATTATTCTAATCATAACTCAATCTCTCA
80346575 TA
1 TA
80346577 AACATTTTTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.25
Consensus pattern (56 bp):
TAGGAAAAGGGACCACAAGCAAATAAAAATTATTCTAATCATAACTCAATCTCTCA
Found at i:80346616 original size:12 final size:12
Alignment explanation
Indices: 80346599--80346638 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
80346589 TCATGTTCTT
80346599 TTTTCTATTGTA
1 TTTTCTATTGTA
80346611 TTTTCTATTGTA
1 TTTTCTATTGTA
*
80346623 TTTTCTATTATA
1 TTTTCTATTGTA
80346635 TTTT
1 TTTT
80346639 ATATCAACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.70
Consensus pattern (12 bp):
TTTTCTATTGTA
Found at i:80346816 original size:74 final size:74
Alignment explanation
Indices: 80346695--80346844 Score: 300
Period size: 74 Copynumber: 2.0 Consensus size: 74
80346685 ACCTTTGAAT
80346695 TTTTTCCTAATTTTCCATTATTCAATTTGGTACTTAAATAAAAACTAAAATAATAATAATGGAGA
1 TTTTTCCTAATTTTCCATTATTCAATTTGGTACTTAAATAAAAACTAAAATAATAATAATGGAGA
80346760 GAAAGTAAA
66 GAAAGTAAA
80346769 TTTTTCCTAATTTTCCATTATTCAATTTGGTACTTAAATAAAAACTAAAATAATAATAATGGAGA
1 TTTTTCCTAATTTTCCATTATTCAATTTGGTACTTAAATAAAAACTAAAATAATAATAATGGAGA
80346834 GAAAGTAAA
66 GAAAGTAAA
80346843 TT
1 TT
80346845 ATAAAATTAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (74 bp):
TTTTTCCTAATTTTCCATTATTCAATTTGGTACTTAAATAAAAACTAAAATAATAATAATGGAGA
GAAAGTAAA
Found at i:80346858 original size:18 final size:17
Alignment explanation
Indices: 80346835--80346872 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
80346825 TAATGGAGAG
80346835 AAAGTAAATTATAAAATT
1 AAAGTAAATTAT-AAATT
80346853 AAAGTAAATTATAAATT
1 AAAGTAAATTATAAATT
80346870 AAA
1 AAA
80346873 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (17 bp):
AAAGTAAATTATAAATT
Found at i:80347186 original size:175 final size:176
Alignment explanation
Indices: 80346895--80347327 Score: 595
Period size: 175 Copynumber: 2.5 Consensus size: 176
80346885 ATAAGATGTG
* *
80346895 GAAATTGATTAATTATTTAGTGGCCTGTCATATTATCATGTTTGCTTTTTACTATGTTAGGAATT
1 GAAATTGATTAATTATTTAGTGGCTTGTCATATTATCATGTTTGCTTCTTACTATGTTAGGAATT
* * *
80346960 TGTTTCCTGCCCACTT-GCTGGTTGGCCACGTTTTCTTTTTGAACATTTGTTCACAAAGTGATTG
66 TGTTTCCTGCCCACTTGGCTGATTGGCAAAGTTTTCTTTTTGAACATTTGTTCACAAAGTGATTG
* * **
80347024 GTATGTCGATATTTTATTAACAGCGAATGTTTTAT-GAAGACGTGGT
131 GTATGCCGACATTTTATTAACAAAGAATGTTTTATGGAA-ACGTGGT
*
80347070 GAAATTGATTAATTATTTAGTGGTTTGTCATATTATCATGTTTGCTTCTTACTATGTTAGGAATT
1 GAAATTGATTAATTATTTAGTGGCTTGTCATATTATCATGTTTGCTTCTTACTATGTTAGGAATT
***
80347135 TGTTTCCTGCCCACTTGGC-GATTGGCAAAGTTTTCTTTTTGAACATTTGTTCGTGAAGTGATTG
66 TGTTTCCTGCCCACTTGGCTGATTGGCAAAGTTTTCTTTTTGAACATTTGTTCACAAAGTGATTG
* * *
80347199 GTATGCCGACATTTTATTGACAAAGCATGTTTTGTGGAAACGTGGT
131 GTATGCCGACATTTTATTAACAAAGAATGTTTTATGGAAACGTGGT
* * ** * *
80347245 GAAGTTGATTAATT-TTTCAATGGCTCCTTATATTATAATGTTTGCTTCTTACTATGTTAGGAAT
1 GAAATTGATTAATTATTT-AGTGGCTTGTCATATTATCATGTTTGCTTCTTACTATGTTAGGAAT
* * *
80347309 TTTTTTTCTGCCCAGTTGG
65 TTGTTTCCTGCCCACTTGG
80347328 TGGTTGATGA
Statistics
Matches: 229, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
174 3 0.01
175 221 0.97
176 5 0.02
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.44
Consensus pattern (176 bp):
GAAATTGATTAATTATTTAGTGGCTTGTCATATTATCATGTTTGCTTCTTACTATGTTAGGAATT
TGTTTCCTGCCCACTTGGCTGATTGGCAAAGTTTTCTTTTTGAACATTTGTTCACAAAGTGATTG
GTATGCCGACATTTTATTAACAAAGAATGTTTTATGGAAACGTGGT
Found at i:80347631 original size:25 final size:24
Alignment explanation
Indices: 80347603--80347663 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
80347593 AATCTGAAAC
80347603 CTAAAGCTCTATATAAACCCTAAAT
1 CTAAA-CTCTATATAAACCCTAAAT
* * *
80347628 CTAAAACCCAATATAAATCCTAAAT
1 CT-AAACTCTATATAAACCCTAAAT
80347653 CATAAACTCTA
1 C-TAAACTCTA
80347664 ACCCAAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.26
Consensus pattern (24 bp):
CTAAACTCTATATAAACCCTAAAT
Found at i:80350653 original size:31 final size:31
Alignment explanation
Indices: 80350615--80350741 Score: 123
Period size: 31 Copynumber: 4.0 Consensus size: 31
80350605 CTGGGAAAAA
*
80350615 AAACATTAAAATAAAACTCAGGTACCAAATT
1 AAACATTAAAACAAAACTCAGGTACCAAATT
* * **
80350646 AAACATTAAAACCAAACTTA--TCATCCTGGGAAAAA
1 AAACATTAAAACAAAACTCAGGT-A-CC----AAATT
80350681 AAACATTAAAACAAAACTCAGGTACCAAATT
1 AAACATTAAAACAAAACTCAGGTACCAAATT
* *
80350712 AAACATTAAAACCAAACTCAAGTACCAAAT
1 AAACATTAAAACAAAACTCAGGTACCAAAT
80350742 AGTATATTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
29 1 0.01
30 1 0.01
31 50 0.65
35 23 0.30
36 1 0.01
37 1 0.01
ACGTcount: A:0.54, C:0.20, G:0.06, T:0.20
Consensus pattern (31 bp):
AAACATTAAAACAAAACTCAGGTACCAAATT
Found at i:80350676 original size:66 final size:66
Alignment explanation
Indices: 80350595--80350729 Score: 261
Period size: 66 Copynumber: 2.0 Consensus size: 66
80350585 CCTAGATTTT
*
80350595 ACTTATCATCCTGGGAAAAAAAACATTAAAATAAAACTCAGGTACCAAATTAAACATTAAAACCA
1 ACTTATCATCCTGGGAAAAAAAACATTAAAACAAAACTCAGGTACCAAATTAAACATTAAAACCA
80350660 A
66 A
80350661 ACTTATCATCCTGGGAAAAAAAACATTAAAACAAAACTCAGGTACCAAATTAAACATTAAAACCA
1 ACTTATCATCCTGGGAAAAAAAACATTAAAACAAAACTCAGGTACCAAATTAAACATTAAAACCA
80350726 A
66 A
80350727 ACT
1 ACT
80350730 CAAGTACCAA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.53, C:0.19, G:0.07, T:0.21
Consensus pattern (66 bp):
ACTTATCATCCTGGGAAAAAAAACATTAAAACAAAACTCAGGTACCAAATTAAACATTAAAACCA
A
Found at i:80352317 original size:25 final size:25
Alignment explanation
Indices: 80352289--80352340 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
80352279 AAACAACTTG
80352289 TAATAATAATAACTAGGTTATGACA
1 TAATAATAATAACTAGGTTATGACA
80352314 TAATAATAATAACTAGGTTATGACA
1 TAATAATAATAACTAGGTTATGACA
80352339 TA
1 TA
80352341 TCCACTGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.33
Consensus pattern (25 bp):
TAATAATAATAACTAGGTTATGACA
Found at i:80354350 original size:47 final size:46
Alignment explanation
Indices: 80354267--80354359 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 46
80354257 TATAACGTTA
80354267 ATACTACAATTTTTGAGGATAATTGATTTCTTGAGTAAGATTGTTT
1 ATACTACAATTTTTGAGGATAATTGATTTCTTGAGTAAGATTGTTT
*
80354313 ATACTACAATTTTTGAGGTTTAATTGATTTCTTGAGTAAGATTGTTT
1 ATACTACAATTTTTGAGG-ATAATTGATTTCTTGAGTAAGATTGTTT
80354360 TGATGGGAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 18 0.40
47 27 0.60
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.47
Consensus pattern (46 bp):
ATACTACAATTTTTGAGGATAATTGATTTCTTGAGTAAGATTGTTT
Found at i:80359439 original size:16 final size:16
Alignment explanation
Indices: 80359418--80359469 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
80359408 TTTGGTTCGT
80359418 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
80359434 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
80359450 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
80359466 TGTA
1 TGTA
80359470 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:80359516 original size:45 final size:44
Alignment explanation
Indices: 80359450--80359544 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
80359440 GGATTAGAGG
* *
80359450 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
80359495 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
80359539 TGTAAT
1 TGTAAT
80359545 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:80359723 original size:16 final size:16
Alignment explanation
Indices: 80359686--80359727 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
80359676 TTAATCATAT
*
80359686 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
80359702 TT-AAATATATTATAA
1 TTAAAATATATTATAA
80359717 TTAAAATATAT
1 TTAAAATATAT
80359728 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:80359734 original size:14 final size:15
Alignment explanation
Indices: 80359695--80359736 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
80359685 TTTAAACATA
*
80359695 ATTATTATTAAATAT
1 ATTATAATTAAATAT
80359710 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
80359724 A-TATAATTTAATA
1 ATTATAATTAAATA
80359737 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:80359909 original size:47 final size:46
Alignment explanation
Indices: 80359858--80360018 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
80359848 GATTTAATAA
80359858 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
80359905 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
80359946 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
80359993 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
80360019 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:80368181 original size:26 final size:26
Alignment explanation
Indices: 80368115--80368181 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 26
80368105 TGGATTCTCT
*
80368115 GAAGCTAGTGTTAGCAACATTGTATC
1 GAAGCTAGTGTTAGCAACACTGTATC
* *
80368141 -AAGATACTGTTAGCAATC-CTG-ATC
1 GAAGCTAGTGTTAGCAA-CACTGTATC
80368165 AGAAGCTAGTGTTAGCA
1 -GAAGCTAGTGTTAGCA
80368182 GCCTGAATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
24 3 0.09
25 16 0.48
26 14 0.42
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (26 bp):
GAAGCTAGTGTTAGCAACACTGTATC
Found at i:80370392 original size:19 final size:19
Alignment explanation
Indices: 80370370--80370409 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
80370360 TTTATTTTTA
80370370 TATTATTAAAT-TATATTAT
1 TATT-TTAAATATATATTAT
*
80370389 TATTTTTAATATATATTAT
1 TATTTTAAATATATATTAT
80370408 TA
1 TA
80370410 ACCCTAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTTTAAATATATATTAT
Found at i:80374371 original size:26 final size:28
Alignment explanation
Indices: 80374342--80374394 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
80374332 TATTTTTTTT
*
80374342 ATTTTAAAAATAC-TTT-TTTATAAATA
1 ATTTAAAAAATACATTTGTTTATAAATA
80374368 ATTTAAAAAATACATTTGTTTATAAAT
1 ATTTAAAAAATACATTTGTTTATAAAT
80374395 TAAGATGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 12 0.50
27 3 0.12
28 9 0.38
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (28 bp):
ATTTAAAAAATACATTTGTTTATAAATA
Found at i:80388220 original size:11 final size:11
Alignment explanation
Indices: 80388206--80388246 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
80388196 TGTTTTCTCC
80388206 CTATTTTGCTA
1 CTATTTTGCTA
*
80388217 CTATTTTACTA
1 CTATTTTGCTA
* *
80388228 TTATGTTGCTA
1 CTATTTTGCTA
80388239 CTATTTTG
1 CTATTTTG
80388247 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:80390056 original size:14 final size:14
Alignment explanation
Indices: 80390037--80390065 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80390027 GGACTGAAAC
80390037 TAGAATTCGACCTA
1 TAGAATTCGACCTA
80390051 TAGAATTCGACCTA
1 TAGAATTCGACCTA
80390065 T
1 T
80390066 TATGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (14 bp):
TAGAATTCGACCTA
Found at i:80400635 original size:87 final size:86
Alignment explanation
Indices: 80400483--80400735 Score: 321
Period size: 87 Copynumber: 2.9 Consensus size: 86
80400473 ATTCCTATTT
* * * *
80400483 AACATAAAAGAATCTAGAAAAAAAAAGTATC-GAGTAACTTCAAATACTTAAACACGAAGTGAAT
1 AACATAAAAGAATCTAGAAAAAAAAAGT-GCAGAGTAATTTCAACTACTTAAACACAAAGTGAAT
*
80400547 CAGTTCCTTACTAATGGTATGC
65 CAGTTCCTTACTAATAGTATGC
* * *
80400569 AACATAAAAGAATCTAGAGAAAAAGAAGTGCAGACTAATTTCAACTACTTAAACACAAAGTAAAT
1 AACATAAAAGAATCTAGA-AAAAAAAAGTGCAGAGTAATTTCAACTACTTAAACACAAAGTGAAT
*
80400634 CAGCTCCTTACTAATAGTATGC
65 CAGTTCCTTACTAATAGTATGC
* * * * *
80400656 AACATACAAGAATCTAGAAAAAAAATAGTGCCA-AGTAATTTGAACTGCTTCACCACAAAGTGAA
1 AACATAAAAGAATCTAGAAAAAAAA-AGTG-CAGAGTAATTTCAACTACTTAAACACAAAGTGAA
*
80400720 TCAATTCCTTACTAAT
64 TCAGTTCCTTACTAAT
80400736 CGTTGTAAGA
Statistics
Matches: 144, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
86 25 0.17
87 117 0.81
88 2 0.01
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (86 bp):
AACATAAAAGAATCTAGAAAAAAAAAGTGCAGAGTAATTTCAACTACTTAAACACAAAGTGAATC
AGTTCCTTACTAATAGTATGC
Found at i:80405731 original size:23 final size:23
Alignment explanation
Indices: 80405701--80405746 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80405691 GTGTTTCATG
80405701 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTTACAT
80405724 TCTGCTGCCTGATTAAGTTACAT
1 TCTGCTGCCTGATTAAGTTACAT
80405747 ACTAGCTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (23 bp):
TCTGCTGCCTGATTAAGTTACAT
Found at i:80406024 original size:25 final size:26
Alignment explanation
Indices: 80405989--80406037 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
80405979 TTCTCCAATT
*
80405989 TTAAACTTGATTTTGA-AATAAAAAA
1 TTAAACATGATTTTGATAATAAAAAA
*
80406014 TTAAACATGATTTTTATAATAAAA
1 TTAAACATGATTTTGATAATAAAA
80406038 CTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TTAAACATGATTTTGATAATAAAAAA
Found at i:80406101 original size:45 final size:46
Alignment explanation
Indices: 80406052--80406142 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
80406042 TTCTTCACAG
*
80406052 AATTAAA-TTCCTACTATAAAATTTTTAAAAAATACAACCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
* * *
80406097 AATTAAATTTCCTACTTTGAAATTTTCAAAAAATACAATCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
80406143 GACATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 34 0.83
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (46 bp):
AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
Found at i:80410783 original size:120 final size:120
Alignment explanation
Indices: 80410480--80412897 Score: 4648
Period size: 120 Copynumber: 20.2 Consensus size: 120
80410470 TTTTCAAGTT
80410480 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80410545 TAATATAAGAATATTAATTATTAAG-ATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80410599 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80410664 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80410719 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80410784 TAATATAAGAATATTAATTATTAAGATTTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80410839 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80410904 TAATATAAGAATATTAATTATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80410958 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411023 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411078 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411143 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411198 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411263 TAATATAAGAATATTAATTATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411317 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
**
80411382 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411437 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411502 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411557 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411622 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411677 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411742 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411797 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411862 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
*
80411917 ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411982 TAATATAAGAATATTAATTATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412036 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
**
80412101 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412156 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80412221 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412276 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
80412341 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
*
80412396 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
** *
80412461 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412516 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80412581 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
*
80412636 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80412701 TAATATAAGAATATTAATTATTAAGAA-TTTTTTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412755 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
80412820 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412875 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
80412898 TAAATATGAT
Statistics
Matches: 2268, Mismatches: 26, Indels: 9
0.98 0.01 0.00
Matches are distributed among these distances:
119 562 0.25
120 1706 0.75
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
Found at i:80411139 original size:359 final size:359
Alignment explanation
Indices: 80410480--80412897 Score: 4674
Period size: 359 Copynumber: 6.7 Consensus size: 359
80410470 TTTTCAAGTT
80410480 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80410545 TAATATAAGAATATTAATTATTAAGATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80410610 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
* *
80410675 CATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80410740 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
*
80410805 TAAGATTTTTTTTAAATTATATAGTTTAATTAAA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80410839 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80410904 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80410969 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
*
80411034 TATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80411099 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
80411164 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411198 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411263 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80411328 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
*
80411393 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80411458 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
80411523 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80411557 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411622 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
80411687 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
130 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
*
80411752 ATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
195 ATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
80411817 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
260 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
80411882 TTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
325 TTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
*
80411917 ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411982 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80412047 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
*
80412112 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80412177 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
80412242 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
80412276 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80412341 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAAATATATTTAA
*
80412406 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
130 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
* *
80412471 ATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
195 ATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
80412536 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
260 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
80412601 TTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
325 TTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
*
80412636 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80412701 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATATTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80412766 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
*
80412831 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80412896 TT
261 TT
80412898 TAAATATGAT
Statistics
Matches: 2040, Mismatches: 17, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
359 1329 0.65
360 711 0.35
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (359 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
Found at i:80411947 original size:719 final size:719
Alignment explanation
Indices: 80410480--80412897 Score: 4685
Period size: 719 Copynumber: 3.4 Consensus size: 719
80410470 TTTTCAAGTT
80410480 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80410545 TAATATAAGAATATTAATTATTAAGATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80410610 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
* **
80410675 CATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80410740 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
*
80410805 TAAGATTTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
80410870 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAA-TTT
391 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
80410934 TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
456 TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
80410999 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTAT
521 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTAT
80411064 ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
586 ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
80411129 TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
651 TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
80411194 TAAA
716 TAAA
80411198 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411263 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80411328 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
80411393 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80411458 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
80411523 TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
80411588 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
391 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
80411653 TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
456 TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
80411718 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTAT
521 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTAT
80411783 ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
586 ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
80411848 TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
651 TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
80411913 TAAA
716 TAAA
*
80411917 ATATATTTAATAATAATTATGTTAATTTATATTTTACAATATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
80411982 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80412047 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
80412112 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80412177 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
80412242 TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
326 TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
80412307 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
391 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
* *
80412372 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
456 TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
* **
80412437 TCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTAT
521 TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTAT
*
80412502 ATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
586 ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
80412567 TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
651 TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
80412632 TAAA
716 TAAA
*
80412636 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
80412701 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATATTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
80412766 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
* *
80412831 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
80412896 TT
261 TT
80412898 TAAATATGAT
Statistics
Matches: 1682, Mismatches: 17, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
718 446 0.27
719 1236 0.73
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (719 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
TATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
TCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTAT
ATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTA
TGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAAT
TAAA
Found at i:80412395 original size:18 final size:17
Alignment explanation
Indices: 80412367--80412401 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
80412357 ATTATTAAGA
*
80412367 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
80412384 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
80412402 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:80412874 original size:18 final size:17
Alignment explanation
Indices: 80412846--80412880 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
80412836 ATTATTAAGA
*
80412846 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
80412863 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
80412881 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:80413094 original size:44 final size:45
Alignment explanation
Indices: 80413045--80413135 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
80413035 ACCTCTATTC
* * *
80413045 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
80413089 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
80413134 CA
1 CA
80413136 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:80413137 original size:16 final size:16
Alignment explanation
Indices: 80413116--80413184 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
80413106 GATTAGCTAT
80413116 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
80413132 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
80413149 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
80413165 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
80413181 TACA
1 TACA
80413185 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:80413158 original size:33 final size:32
Alignment explanation
Indices: 80413116--80413184 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
80413106 GATTAGCTAT
80413116 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
80413149 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
80413181 TACA
1 TACA
80413185 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:80422853 original size:15 final size:15
Alignment explanation
Indices: 80422833--80422865 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
80422823 TGAGGCTTTG
80422833 GCTGCTTCCTTTT-CT
1 GCTGCTT-CTTTTGCT
80422848 GCTGCTTCTTTTGCT
1 GCTGCTTCTTTTGCT
80422863 GCT
1 GCT
80422866 ATCCTCTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.00, C:0.30, G:0.18, T:0.52
Consensus pattern (15 bp):
GCTGCTTCTTTTGCT
Found at i:80429743 original size:3 final size:3
Alignment explanation
Indices: 80429735--80429782 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
80429725 AATAAATAGG
* * * *
80429735 TAA TAA TAA CAA TAG TAG TAG TAA TAA TAA TAAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
80429781 TA
1 TA
80429783 GTAGGACTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:80429774 original size:13 final size:13
Alignment explanation
Indices: 80429756--80429780 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80429746 ATAGTAGTAG
80429756 TAATAATAATAAA
1 TAATAATAATAAA
80429769 TAATAATAATAA
1 TAATAATAATAA
80429781 TAGTAGGACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:80430818 original size:15 final size:15
Alignment explanation
Indices: 80430798--80430848 Score: 102
Period size: 15 Copynumber: 3.4 Consensus size: 15
80430788 GGGCATGGTA
80430798 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
80430813 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
80430828 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
80430843 ATTGGG
1 ATTGGG
80430849 CCGGGCAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.08, C:0.00, G:0.47, T:0.45
Consensus pattern (15 bp):
ATTGGGTTTGTGGGT
Found at i:80430826 original size:8 final size:8
Alignment explanation
Indices: 80430800--80430842 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
80430790 GCATGGTAAT
80430800 TGGGTTTG
1 TGGGTTTG
*
80430808 TGGGTAT-
1 TGGGTTTG
80430815 TGGGTTTG
1 TGGGTTTG
*
80430823 TGGGTAT-
1 TGGGTTTG
80430830 TGGGTTTG
1 TGGGTTTG
80430838 TGGGT
1 TGGGT
80430843 ATTGGGCCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 12 0.41
8 17 0.59
ACGTcount: A:0.05, C:0.00, G:0.49, T:0.47
Consensus pattern (8 bp):
TGGGTTTG
Found at i:80431085 original size:41 final size:41
Alignment explanation
Indices: 80431028--80431212 Score: 156
Period size: 44 Copynumber: 4.4 Consensus size: 41
80431018 AATCCATTGT
* *
80431028 ACTTCAGGGAAATAAGACTTGATGCGATCTGCTCTACTGCA
1 ACTTCAGAGAGATAAGACTTGATGCGATCTGCTCTACTGCA
*** *
80431069 ACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCA
1 ACTTCAGAGAGATAAGA-CT-TGA-TGCGATCTGCTCTACTGCA
* * * * *
80431113 ACTTCAGAGAGATAGGA-TTGGTTTCTTCTATCTGCTCCACTGCA
1 ACTTCAGAGAGATAAGACTT-G---ATGCGATCTGCTCTACTGCA
* * * *
80431157 ACTTCAGGGAGATAAGACTTGATGCGATCTACTCTGCTGTA
1 ACTTCAGAGAGATAAGACTTGATGCGATCTGCTCTACTGCA
*
80431198 ACCTCAGAGAGATAA
1 ACTTCAGAGAGATAA
80431213 TATCATTTAT
Statistics
Matches: 113, Mismatches: 23, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
41 42 0.37
42 4 0.04
43 3 0.03
44 62 0.55
45 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (41 bp):
ACTTCAGAGAGATAAGACTTGATGCGATCTGCTCTACTGCA
Found at i:80431114 original size:44 final size:43
Alignment explanation
Indices: 80431058--80431255 Score: 159
Period size: 44 Copynumber: 4.6 Consensus size: 43
80431048 GATGCGATCT
80431058 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCC
1 GCTCTACTGCAACTTCAGAGAGATAAGATCT-TGATTTTAATCC
* * * * *
80431102 GCTCTACTGCAACTTCAGAGAGATAGGAT-TGGTTTCTTCTATCT
1 GCTCTACTGCAACTTCAGAGAGATAAGATCTTGATT-TT-AATCC
* * *** *
80431146 GCTCCACTGCAACTTCAGGGAGATAAGA-CTTGA-TGCGATCT
1 GCTCTACTGCAACTTCAGAGAGATAAGATCTTGATTTTAATCC
* * * * * *
80431187 ACTCTGCTGTAACCTCAGAGAGATAATATCATTTATTTTAATCC
1 GCTCTACTGCAACTTCAGAGAGATAAGATC-TTGATTTTAATCC
* * *
80431231 GCTCCACTGTAACTTCAGGGAGATA
1 GCTCTACTGCAACTTCAGAGAGATA
80431256 GGATAGTGTC
Statistics
Matches: 118, Mismatches: 30, Indels: 12
0.74 0.19 0.08
Matches are distributed among these distances:
41 25 0.21
42 4 0.03
43 7 0.06
44 82 0.69
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
GCTCTACTGCAACTTCAGAGAGATAAGATCTTGATTTTAATCC
Found at i:80431258 original size:129 final size:128
Alignment explanation
Indices: 80431028--80431349 Score: 378
Period size: 129 Copynumber: 2.5 Consensus size: 128
80431018 AATCCATTGT
* * *
80431028 ACTTCAGGGAAATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGA
1 ACTTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTGTGA
* * * *
80431093 TTTTAATCCGCTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCA
66 TTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGA-TAGTGTCTTCGATCTGCTCCACTGCA
* * * *
80431157 ACTTCAGGGAGATAAGACTTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAATATCAT-TT
1 ACTTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC-TGTG
* * * *
80431221 ATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTA
65 ATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCACTGCA
* * * * * * *
80431285 A-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 ACT-TCAGGGAGATAAGA-CT-T-GATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCT
80431349 G
62 G
80431350 AAATTCTCCG
Statistics
Matches: 164, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
127 1 0.01
128 36 0.22
129 92 0.56
130 3 0.02
131 32 0.20
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (128 bp):
ACTTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTGTGA
TTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCACTGCA
Found at i:80431298 original size:87 final size:85
Alignment explanation
Indices: 80431137--80431345 Score: 215
Period size: 87 Copynumber: 2.4 Consensus size: 85
80431127 GGATTGGTTT
* * * *
80431137 CTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATGCGATCTACTCTGCTGTAACCT
1 CTTCAATCCGCTCCACTGTAACTTCAGGGAGATAAGACTTGATGCGATCTACTCCGCTGTAACCT
* *
80431202 CAGAGAGATAATATCAT-TTA
66 CAGAGAGATAAGATC-TCTGA
* * * * * *
80431222 TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAA
1 CTTCAATCCGCTCCACTGTAACTTCAGGGAGATAAGACT--TG-ATGCGATCTACTCCGCTGTAA
* * *
80431286 TCTCAGGGAGATAAGATCTCTGG
63 CCTCAGAGAGATAAGATCTCTGA
* *
80431309 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA
1 CTTCAATCCGCTCCACTGTAACTTCAGGGAGATAAGA
80431346 TCTGAAATTC
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
84 1 0.01
85 31 0.31
86 3 0.03
87 65 0.65
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (85 bp):
CTTCAATCCGCTCCACTGTAACTTCAGGGAGATAAGACTTGATGCGATCTACTCCGCTGTAACCT
CAGAGAGATAAGATCTCTGA
Found at i:80431328 original size:44 final size:43
Alignment explanation
Indices: 80431226--80431348 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 43
80431216 CATTTATTTT
* * ** *
80431226 AATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTGGCTTC
* *
80431269 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTGGCTTC
80431313 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCT
80431349 GAAATTCTCC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 28 0.41
44 40 0.59
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACTCAGGGAGATAAGATCTCTGGCTTC
Found at i:80431392 original size:47 final size:41
Alignment explanation
Indices: 80431323--80431436 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 41
80431313 AATCTGCTCC
*
80431323 ACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCT
1 ACTGTAACCTCAGAGAGATAAGATCTG--A---TCCGGTCTACTCT
* *
80431369 ACTGTAATCCTCAGAGAGATAAGACCTGATGCGGTCTACTCT
1 ACTGTAA-CCTCAGAGAGATAAGATCTGATCCGGTCTACTCT
* *
80431411 GCTGTAACTTCAGAGAGATAAGATCT
1 ACTGTAACCTCAGAGAGATAAGATCT
80431437 TTTAATCCGC
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
41 17 0.28
42 18 0.30
45 1 0.02
46 7 0.11
47 18 0.30
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (41 bp):
ACTGTAACCTCAGAGAGATAAGATCTGATCCGGTCTACTCT
Found at i:80431500 original size:44 final size:46
Alignment explanation
Indices: 80431445--80431561 Score: 134
Period size: 44 Copynumber: 2.6 Consensus size: 46
80431435 CTTTTAATCC
* * *
80431445 GCTCCATTGTAATCTCAAGGAGATAGGAT-T--ACTATCTTTGATCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAAAT-TCTTTGATCT
* * *
80431489 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCT
1 GCTCCACTGTAATCTCAAGGAGATAAGATCTGAAATTCTTTGATCT
*
80431535 GTTCCACTGTAATCTC-AGGAGATAAGA
1 GCTCCACTGTAATCTCAAGGAGATAAGA
80431562 CCTGTATAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
44 25 0.41
45 11 0.18
46 23 0.38
47 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (46 bp):
GCTCCACTGTAATCTCAAGGAGATAAGATCTGAAATTCTTTGATCT
Found at i:80444332 original size:3 final size:3
Alignment explanation
Indices: 80444324--80444373 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
80444314 AATAAATAGG
* * * *
80444324 TAA TAA TAA CAA TAG TAG TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
80444372 TA
1 TA
80444374 GTAGGACTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:80445404 original size:15 final size:15
Alignment explanation
Indices: 80445386--80445421 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
80445376 GGGCATGGTA
80445386 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
80445401 ATTGGGTTTGTGGGT
1 ATTGGGTTTGTGGGT
80445416 ATTGGG
1 ATTGGG
80445422 CCGGGCAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.08, C:0.00, G:0.47, T:0.44
Consensus pattern (15 bp):
ATTGGGTTTGTGGGT
Found at i:80447217 original size:18 final size:18
Alignment explanation
Indices: 80447190--80447231 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
80447180 TCCTCTAAAC
*
80447190 TTTATAGAGAAATATTAT
1 TTTATAGAGAAATACTAT
* *
80447208 TTTATTGAGAAATCCTAT
1 TTTATAGAGAAATACTAT
80447226 TTTATA
1 TTTATA
80447232 AAAACCTTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (18 bp):
TTTATAGAGAAATACTAT
Found at i:80447628 original size:18 final size:20
Alignment explanation
Indices: 80447584--80447629 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
80447574 TAAAAATTAA
80447584 AATTATATAATATATTATTCT
1 AATTA-ATAATATATTATTCT
*
80447605 ACATTAATAAT-TATT-TTTT
1 A-ATTAATAATATATTATTCT
80447624 AATTAA
1 AATTAA
80447630 ATTTAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 4 0.17
20 4 0.17
21 6 0.26
22 4 0.17
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTAATAATATATTATTCT
Done.