Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 251 of 253
Found at i:80451617 original size:68 final size:68
Alignment explanation
Indices: 80451508--80451644 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
80451498 TTTTGTCTGG
*
80451508 ACCATTACATCGCTAAAACTTTGGTGAATGATTTTTTTTTTCATTGAACAAATATTTAGGCATTT
1 ACCATTACATCGCTAAAACTTTGGAGAATGATTTTTTTTTTCATTGAACAAATATTTAGGCATTT
80451573 TCA
66 TCA
*
80451576 ACCATTACGTCGCTAAAACTTTGGAGAATGATTTTTTTTTTCATTGAACAAATATTTAGGCATTT
1 ACCATTACATCGCTAAAACTTTGGAGAATGATTTTTTTTTTCATTGAACAAATATTTAGGCATTT
80451641 TCA
66 TCA
80451644 A
1 A
80451645 TTTATTAAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (68 bp):
ACCATTACATCGCTAAAACTTTGGAGAATGATTTTTTTTTTCATTGAACAAATATTTAGGCATTT
TCA
Found at i:80452022 original size:26 final size:26
Alignment explanation
Indices: 80451975--80452025 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
80451965 TGGTACCTGA
* *
80451975 TTTTTTCAATTTGATACTTGAGTTTT
1 TTTTTTCAATTAGATACATGAGTTTT
80452001 TTTTTTCAATTA-AGTACATGAGTTT
1 TTTTTTCAATTAGA-TACATGAGTTT
80452026 GATTTCAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.57
Consensus pattern (26 bp):
TTTTTTCAATTAGATACATGAGTTTT
Found at i:80452199 original size:30 final size:30
Alignment explanation
Indices: 80452143--80452200 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
80452133 ATTAAATTGA
* *
80452143 ACATTGAAACCAAACTCATATACTAAATTC
1 ACATTAAAACCAAACTCAGATACTAAATTC
80452173 ACATTAAAACCAAACTCAAGAT-CTAAAT
1 ACATTAAAACCAAACTC-AGATACTAAAT
80452201 AGTATATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.50, C:0.22, G:0.03, T:0.24
Consensus pattern (30 bp):
ACATTAAAACCAAACTCAGATACTAAATTC
Found at i:80454291 original size:52 final size:53
Alignment explanation
Indices: 80454212--80454316 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 53
80454202 CATCCTATTC
80454212 TCATAAAATCCTTCCATGAAATCCGTACAATCACGTCGGATTATAACAGTTTG
1 TCATAAAATCCTTCCATGAAATCCGTACAATCACGTCGGATTATAACAGTTTG
*
80454265 TCATAAAA-GCTTCCATGAAATCCGTACAATCACGTCGGATTATAACAGTTTG
1 TCATAAAATCCTTCCATGAAATCCGTACAATCACGTCGGATTATAACAGTTTG
80454317 ATTGGTAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 43 0.84
53 8 0.16
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (53 bp):
TCATAAAATCCTTCCATGAAATCCGTACAATCACGTCGGATTATAACAGTTTG
Found at i:80457213 original size:16 final size:16
Alignment explanation
Indices: 80457192--80457225 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
80457182 AATCCATTCT
*
80457192 CTCCCTTATACACACA
1 CTCCCTTACACACACA
80457208 CTCCCTTACACACACA
1 CTCCCTTACACACACA
80457224 CT
1 CT
80457226 AGAAGTGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.47, G:0.00, T:0.24
Consensus pattern (16 bp):
CTCCCTTACACACACA
Found at i:80463678 original size:132 final size:131
Alignment explanation
Indices: 80463389--80463781 Score: 361
Period size: 132 Copynumber: 3.0 Consensus size: 131
80463379 TTTCTGTTTA
* ** *
80463389 AGCACTTGTTCATGCTTGTATACACTTGTAATCAATATGTTAGCTTAGAATA-GGCATAGATGAG
1 AGCACTTGTTCATGCTTGTATATACTTGTAATCAATATGTTAATTTATAATAGGGCATAGATGAG
* * * *** ** * ** ***
80463453 CTTAGATGCAAATTGTAGCATAGGTTCGCTG-TTGATGTAA-CATACATACTTCCCAGTTTTTG-
66 C-TAGATACAAATTGTAACATAGGTTTGCTGATCCTTGTAACCATGGAT--GTAACA-TAAATGC
***
80463515 T-GTA
127 TCCCC
*
80463519 AGCACTTGTTCATGCTTGTATATACTTGTATTCAATATGTTAATTTATAATA-GGCATAGATGAG
1 AGCACTTGTTCATGCTTGTATATACTTGTAATCAATATGTTAATTTATAATAGGGCATAGATGAG
80463583 CTAGATACAAATTGTAACATAGTGTTT-CTGATTCAGC-TGTAACCATGGATGTAACATAAATGC
66 CTAGATACAAATTGTAACATAG-GTTTGCTGA-TC--CTTGTAACCATGGATGTAACATAAATGC
80463646 TCCCC
127 TCCCC
* * *
80463651 AGCACTTGTTCATGCTTGTATATACTTGTAATCGATATGTTAGTTTGTAATAGGGGCATAGATGA
1 AGCACTTGTTCATGCTTGTATATACTTGTAATCAATATGTTAATTTATAATA-GGGCATAGATGA
* *** * * *
80463716 GCTTGATGTGAATTGTAACATAGGTTTGCTGATCCTTGTAACCGTTGATGTAACATACATGCTCC
65 GCTAGATACAAATTGTAACATAGGTTTGCTGATCCTTGTAACCATGGATGTAACATAAATGCTCC
80463781 C
130 C
80463782 TTTTTCTGTA
Statistics
Matches: 219, Mismatches: 32, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
129 22 0.10
130 66 0.30
131 6 0.03
132 80 0.37
133 11 0.05
134 34 0.16
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (131 bp):
AGCACTTGTTCATGCTTGTATATACTTGTAATCAATATGTTAATTTATAATAGGGCATAGATGAG
CTAGATACAAATTGTAACATAGGTTTGCTGATCCTTGTAACCATGGATGTAACATAAATGCTCCC
C
Found at i:80464178 original size:135 final size:133
Alignment explanation
Indices: 80463984--80464225 Score: 378
Period size: 135 Copynumber: 1.8 Consensus size: 133
80463974 TCGAAGTAAT
* * *
80463984 ATACATGCTCTCCAGTTTCTGTGTAAGCACTTGTTCATGCTTTGTATATATTTGTAATATATATG
1 ATACATGCGCCCCAGTTTCTGTGTAAGCACTTGTTCATGCTTTGTATATACTTGTAATATATATG
* *
80464049 TTAGCATAGTAATCATAGATGAGCTATCTGCAAATTGCAACATAGTGCCACTGATCCAGCTGTAA
66 TTAGCATAG---TCATAGATAAGCTATATGCAAATTGCAACATAGTGCCACTGATCCAGCTGTAA
80464114 CCATTG
128 CCATTG
*
80464120 ATACATGCGCCCCAGTTTCTGTGTAAGCAC-TGTTCATGCTTTGTATATACTTGTAATATGTATG
1 ATACATGCGCCCCAGTTTCTGTGTAAGCACTTGTTCATGCTTTGTATATACTTGTAATATATATG
* *
80464184 TTAGCATAGTCATTGATAAGCTATATGCAAATTGTAACATAG
66 TTAGCATAGTCATAGATAAGCTATATGCAAATTGCAACATAG
80464226 GATTGCCGAT
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
132 29 0.30
135 41 0.42
136 28 0.29
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (133 bp):
ATACATGCGCCCCAGTTTCTGTGTAAGCACTTGTTCATGCTTTGTATATACTTGTAATATATATG
TTAGCATAGTCATAGATAAGCTATATGCAAATTGCAACATAGTGCCACTGATCCAGCTGTAACCA
TTG
Found at i:80472896 original size:4 final size:4
Alignment explanation
Indices: 80472887--80472919 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
80472877 AGCAAACGTG
*
80472887 AGAA AGAA AGAA GGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
80472920 TAAAAAAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:80473733 original size:47 final size:47
Alignment explanation
Indices: 80473669--80473779 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
80473659 GACATTGAGT
*
80473669 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
80473716 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
80473763 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
80473780 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:80484679 original size:29 final size:29
Alignment explanation
Indices: 80484646--80484701 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
80484636 TTTTAGGGAC
* * *
80484646 TATCAAATTAGTCTCTCTATTATTAAACG
1 TATCAAATTAGTCCCTATACTATTAAACG
*
80484675 TATCAATTTAGTCCCTATACTATTAAA
1 TATCAAATTAGTCCCTATACTATTAAA
80484702 AAGAATTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (29 bp):
TATCAAATTAGTCCCTATACTATTAAACG
Found at i:80485791 original size:34 final size:36
Alignment explanation
Indices: 80485751--80485819 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
80485741 AATTTGTTAT
80485751 TATACCAAC-TTAAAAA-CTTCCATGTAATCTTTTA
1 TATACCAACTTTAAAAACCTTCCATGTAATCTTTTA
80485785 TATACCAACTTTAAAAACCTTCCATGTAATCTTTT
1 TATACCAACTTTAAAAACCTTCCATGTAATCTTTT
80485820 TGTCAACCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 9 0.27
35 7 0.21
36 17 0.52
ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39
Consensus pattern (36 bp):
TATACCAACTTTAAAAACCTTCCATGTAATCTTTTA
Found at i:80487356 original size:25 final size:22
Alignment explanation
Indices: 80487300--80487356 Score: 60
Period size: 25 Copynumber: 2.4 Consensus size: 22
80487290 ATTTAAAATT
80487300 AAAAATATTTATAAAAATTTAA
1 AAAAATATTTATAAAAATTTAA
*
80487322 AAAATTATATTTTTAAAAAATTCTAA
1 AAAA--ATATTTAT-AAAAATT-TAA
80487348 ATAAAATAT
1 A-AAAATAT
80487357 AAAAAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 4 0.14
24 7 0.24
25 11 0.38
26 4 0.14
27 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATATTTATAAAAATTTAA
Found at i:80492584 original size:32 final size:33
Alignment explanation
Indices: 80492548--80492614 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 33
80492538 TAAAATGAGG
** *
80492548 TTTTAGGTTCCTTAAAAGTTAG-AAAAAAATTT
1 TTTTAGGCCCCTTAAAAGTTAGTAAAAAAAATT
*
80492580 TTTTAGGCCCCTTAAAAGTTGGTAAAAAAAATT
1 TTTTAGGCCCCTTAAAAGTTAGTAAAAAAAATT
80492613 TT
1 TT
80492615 GAGCCCTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (33 bp):
TTTTAGGCCCCTTAAAAGTTAGTAAAAAAAATT
Found at i:80492624 original size:30 final size:32
Alignment explanation
Indices: 80492557--80492627 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
80492547 GTTTTAGGTT
* *
80492557 CCTTAAAAGTTAGAAAAAAATTTTTTTAGGCC
1 CCTTAAAAGTTAGAAAAAAATATTTTGAGGCC
*
80492589 CCTTAAAAGTTGGTAAAAAAA-ATTTTGA-G-C
1 CCTTAAAAGTTAG-AAAAAAATATTTTGAGGCC
80492619 CCTTAAAAG
1 CCTTAAAAG
80492628 CTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.29
31 1 0.03
32 17 0.49
33 7 0.20
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.31
Consensus pattern (32 bp):
CCTTAAAAGTTAGAAAAAAATATTTTGAGGCC
Found at i:80493627 original size:20 final size:21
Alignment explanation
Indices: 80493586--80493629 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
80493576 TAAAAATTGA
* *
80493586 TAATTTAATCTATTTAATCAT
1 TAATTTAATCTATTAAAACAT
80493607 TAATTTAAT-TATTAAAACAT
1 TAATTTAATCTATTAAAACAT
80493627 TAA
1 TAA
80493630 ATATAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (21 bp):
TAATTTAATCTATTAAAACAT
Found at i:80494575 original size:17 final size:18
Alignment explanation
Indices: 80494550--80494592 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80494540 TTTTTATTTT
*
80494550 TATTATA-TTAAAATAAA
1 TATTATATTTAAAAAAAA
*
80494567 TATTTTATTTAAAAAAAA
1 TATTATATTTAAAAAAAA
80494585 TTATTATA
1 -TATTATA
80494593 CAAACAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTATATTTAAAAAAAA
Found at i:80495565 original size:12 final size:11
Alignment explanation
Indices: 80495550--80495592 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
80495540 ATGTTACTTA
80495550 TTATTTTAATTT
1 TTATTTT-ATTT
80495562 TTATTTTATTGT
1 TTATTTTATT-T
* *
80495574 TAATTTTATTA
1 TTATTTTATTT
80495585 TTATTTTA
1 TTATTTTA
80495593 AAGACATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:80495580 original size:17 final size:18
Alignment explanation
Indices: 80495547--80495593 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
80495537 GTTATGTTAC
80495547 TTATTATTTTAATTTTTA
1 TTATTATTTTAATTTTTA
80495565 TT-TTATTGTTAA-TTTTA
1 TTATTATT-TTAATTTTTA
80495582 TTATTATTTTAA
1 TTATTATTTTAA
80495594 AGACATTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 16 0.59
18 11 0.41
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTATTATTTTAATTTTTA
Found at i:80496822 original size:58 final size:58
Alignment explanation
Indices: 80496667--80496838 Score: 195
Period size: 58 Copynumber: 2.9 Consensus size: 58
80496657 TTTGAATTTT
* * * *
80496667 TTTTTGTCCAAGTTAGTCACTGAACTTGACAATTATTCCCAACATTAGGACCTGAACTC
1 TTTTTGTCCAAGTTAGTCCCTGAACTTAACAATTGTTCCC-ACATTAGGACCTAAACTC
* * * *
80496726 TTTTTAGTCCAAGTTAGTACCTGAAC-TAGACAACTGTTCCCACATT-TGAGCCTAAATTC
1 TTTTT-GTCCAAGTTAGTCCCTGAACTTA-ACAATTGTTCCCACATTAGGA-CCTAAACTC
* * *
80496785 TTTTTGTCCAAATTGGTCCCTGAACTTAACAATTGTTCCCACATTGGGACCTAA
1 TTTTTGTCCAAGTTAGTCCCTGAACTTAACAATTGTTCCCACATTAGGACCTAA
80496839 TCATTTTGCT
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
58 40 0.42
59 27 0.28
60 28 0.29
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (58 bp):
TTTTTGTCCAAGTTAGTCCCTGAACTTAACAATTGTTCCCACATTAGGACCTAAACTC
Found at i:80501082 original size:263 final size:259
Alignment explanation
Indices: 80500569--80501283 Score: 869
Period size: 263 Copynumber: 2.7 Consensus size: 259
80500559 TCAAAGCTTG
* * * *
80500569 AAAG-TTGAAACTCAACAGAAGCTCGATTGAGTTCCACTTTTAAAGCATAACTCTCATGATCAAT
1 AAAGCTTGAAACTCAACAGAAGCTCAATCGAGTTCCACATTTAAAGC-TAACTCTCATGATCGAT
* ** * * * * * *
80500633 TTCAAGCTCAATTATTAGTACTGGAGCTAGAATTAAGTGTTTAAATGTTTACATTGAAGTTTTTC
65 TTCAAGCTCAATTATTAGTGCTCAAACTAGAACTCA-TGTTTAAATG-TTAAACTGAAGTTTCTC
* * * *
80500698 AATA-TCGTTAAATATAGAAAAAAGCTGGATTAAACTGATAAGGTACTCAGATTAAGTATTAGTA
128 AATACTCATTAAA-ATAGAAAAAAGCTGGATTAAACTGATAAGCTACTCAAATAAAGTATTAGTA
* * **
80500762 TACTCGAATTTGACCACTTCAACAGCCCAAGCCCTAAGAAGCTTGAGCTCAAGTTTGACTTGAAA
192 TACTCGAATTCGAACACTTCAACAGCCCAAGCCAAAAGAAGCTTGAGCTCAAGTTTGACTTGAAA
80500827 ATC
257 ATC
* *
80500830 AAAGCTTGAAACTCAACAGAAGCTCAATCGAGTTCCACATTTAAAGCTCAACTCTCACGCTCGAT
1 AAAGCTTGAAACTCAACAGAAGCTCAATCGAGTTCCACATTTAAAGCT-AACTCTCATGATCGAT
* * *
80500895 TTCAATCTCAATTATTAGTGCTTTAACCT-GAACTCATGTTTAAATGTTCAAAACTGAAGTTTCT
65 TTCAAGCTCAATTATTAGTGC-TCAAACTAGAACTCATGTTTAAATGTT--AAACTGAAGTTTCT
* * * *
80500959 CAATACTCATTAAACATAGAAAAAAGCAGGACTAAGCTGATAAGCTACACAAATAAAGTATTAGT
127 CAATACTCATTAAA-ATAGAAAAAAGCTGGATTAAACTGATAAGCTACTCAAATAAAGTATTAGT
* *
80501024 ATACTCGAATTCGAACAGTTCAACAGCTCAAGCCAAAAGAAGCTTGAGCTCAAGTTTGACTTGAA
191 ATACTCGAATTCGAACACTTCAACAGCCCAAGCCAAAAGAAGCTTGAGCTCAAGTTTGACTTGAA
*
80501089 ACTC
256 AATC
* * ** * *
80501093 GAAGCCTGAAACTCAACAGAAGCTCAATCGAGTTCCATGTTTAAAGCTAAACTTTCATGTTCGAT
1 AAAGCTTGAAACTCAACAGAAGCTCAATCGAGTTCCACATTTAAAGCT-AACTCTCATGATCGAT
* * * * * * * *
80501158 TTCAAGCTCAATGATTAGTGCTCAAACTCGAACTCGTGTTTAAAGGTTTAACTTGTAGTTTCCCG
65 TTCAAGCTCAATTATTAGTGCTCAAACTAGAACTCATGTTTAAATGTTAAAC-TGAAGTTTCTCA
*
80501223 ATACTCATTAAGAATAGAAAAAAGCTGCATTAAACTGATAAGCTACTCAAATAAAGTATTA
129 ATACTCATTAA-AATAGAAAAAAGCTGGATTAAACTGATAAGCTACTCAAATAAAGTATTA
80501284 TCGGGGAATT
Statistics
Matches: 390, Mismatches: 55, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
260 2 0.01
261 18 0.05
262 160 0.41
263 210 0.54
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (259 bp):
AAAGCTTGAAACTCAACAGAAGCTCAATCGAGTTCCACATTTAAAGCTAACTCTCATGATCGATT
TCAAGCTCAATTATTAGTGCTCAAACTAGAACTCATGTTTAAATGTTAAACTGAAGTTTCTCAAT
ACTCATTAAAATAGAAAAAAGCTGGATTAAACTGATAAGCTACTCAAATAAAGTATTAGTATACT
CGAATTCGAACACTTCAACAGCCCAAGCCAAAAGAAGCTTGAGCTCAAGTTTGACTTGAAAATC
Found at i:80511990 original size:14 final size:14
Alignment explanation
Indices: 80511967--80512008 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
80511957 ACAGAAAAGT
*
80511967 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
80511981 AAATCATTTTACGG
1 AAAACATTTTACAG
80511995 AAAACATTTTACAG
1 AAAACATTTTACAG
80512009 CCAATCAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.31
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:80511992 original size:34 final size:35
Alignment explanation
Indices: 80511932--80511998 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
80511922 CAAACACCAG
* *
80511932 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
80511967 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
80511999 CATTTTACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:80512555 original size:37 final size:37
Alignment explanation
Indices: 80512504--80512588 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
80512494 TAACCGACCT
*
80512504 GAATTAACATATTTTGATTAGTTAGATCGGTTAAACC
1 GAATTAACAGATTTTGATTAGTTAGATCGGTTAAACC
*
80512541 GAATTAACAGATTTTGATTAGTTAGATTGGTTAAACC
1 GAATTAACAGATTTTGATTAGTTAGATCGGTTAAACC
80512578 GAATTAACAGA
1 GAATTAACAGA
80512589 AATTCAAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (37 bp):
GAATTAACAGATTTTGATTAGTTAGATCGGTTAAACC
Found at i:80521125 original size:26 final size:26
Alignment explanation
Indices: 80521096--80521155 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
80521086 TCCCTTTGAA
* * *
80521096 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
80521122 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
80521150 CCATTC
1 TCATTC
80521156 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:80521141 original size:28 final size:28
Alignment explanation
Indices: 80521110--80521181 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
80521100 TCGATATTTT
*
80521110 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
80521138 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
80521166 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
80521182 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:80526209 original size:57 final size:57
Alignment explanation
Indices: 80526118--80526360 Score: 434
Period size: 57 Copynumber: 4.2 Consensus size: 57
80526108 GATCTCATTT
* *
80526118 CACACACTTAGTGCCTCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
80526177 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTC-GTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
80526233 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
80526290 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
80526347 CACACACAGTGCCT
1 CACACACAGTGCCT
80526361 ATGTTCACTT
Statistics
Matches: 180, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
56 56 0.31
57 117 0.65
59 7 0.04
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:80526214 original size:29 final size:29
Alignment explanation
Indices: 80526118--80526330 Score: 209
Period size: 29 Copynumber: 7.4 Consensus size: 29
80526108 GATCTCATTT
*
80526118 CACACACTTAGTGCCTCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
***** * *
80526149 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
80526177 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*** * *
80526206 CACACACAGTG-CTC-GTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
80526233 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
**** * *
80526262 CACACACAGTG-CTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
80526290 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
80526319 CACACACAGTGC
1 CACACACAGTGC
80526331 TCGGTTACGG
Statistics
Matches: 141, Mismatches: 37, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
27 19 0.13
28 48 0.34
29 67 0.48
31 7 0.05
ACGTcount: A:0.29, C:0.37, G:0.18, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:80526265 original size:113 final size:114
Alignment explanation
Indices: 80526117--80526360 Score: 436
Period size: 113 Copynumber: 2.1 Consensus size: 114
80526107 TGATCTCATT
** * *
80526117 TCACACACTTAGTGCCTCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCGCACAC
1 TCACACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACAC
80526182 ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTC-GTTACGGAAC
66 ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAAC
*
80526230 TCGCACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACAC
1 TCACACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACAC
80526295 ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAAC
66 ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAAC
80526344 TCACACACACAGTGCCT
1 TCACACACACAGTGCCT
80526361 ATGTTCACTT
Statistics
Matches: 124, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
113 98 0.79
114 26 0.21
ACGTcount: A:0.28, C:0.36, G:0.18, T:0.18
Consensus pattern (114 bp):
TCACACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACAC
ACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAAC
Found at i:80528402 original size:28 final size:28
Alignment explanation
Indices: 80528334--80528412 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
80528324 GAATCATTCG
* * * *
80528334 ATATTTTGCACACTAACTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCCCA
* *
80528362 ATATCTCACACACTAAGTGCCATTCCCA
1 ATATTTCGCACACTAAGTGCCATTCCCA
* * *
80528390 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
80528413 ATTTGATTGC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCCCA
Found at i:80538438 original size:18 final size:18
Alignment explanation
Indices: 80538409--80538443 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
80538399 TATTTGTTGG
80538409 TGGCATAATATT-TTTTT
1 TGGCATAATATTCTTTTT
80538426 TGGCATAATTATTCTTTT
1 TGGCATAA-TATTCTTTT
80538444 AATATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.57
Consensus pattern (18 bp):
TGGCATAATATTCTTTTT
Found at i:80540216 original size:21 final size:19
Alignment explanation
Indices: 80540187--80540233 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
80540177 TTTTATTTTT
*
80540187 ATTTTTTAAAATCTATAAATA
1 ATTTATTAAAAT-TATAAA-A
*
80540208 GTTTATTAAAATTATAAAA
1 ATTTATTAAAATTATAAAA
80540227 ATTTATT
1 ATTTATT
80540234 TTATAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
20 6 0.26
21 10 0.43
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTTATTAAAATTATAAAA
Found at i:80546650 original size:18 final size:19
Alignment explanation
Indices: 80546627--80546665 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
80546617 TTTATGCTAT
80546627 AATTTTAA-AATTATTATA
1 AATTTTAATAATTATTATA
*
80546645 AATTTTAATATTTATTATA
1 AATTTTAATAATTATTATA
80546664 AA
1 AA
80546666 ATATGTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTTTAATAATTATTATA
Found at i:80549459 original size:21 final size:21
Alignment explanation
Indices: 80549406--80549459 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
80549396 TAAAAATTAA
* *
80549406 AAATATTTTATATTAATATTTT
1 AAATATTTTTTATCAATA-TTT
*
80549428 AATATATTTTTAATCAA-ATTT
1 AA-ATATTTTTTATCAATATTT
80549449 AAATATTTTTT
1 AAATATTTTTT
80549460 TAAATAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 8 0.30
21 5 0.19
22 3 0.11
23 11 0.41
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
AAATATTTTTTATCAATATTT
Found at i:80563034 original size:31 final size:31
Alignment explanation
Indices: 80562999--80563062 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
80562989 TCTGTATTGA
80562999 CAACAATATATATATTAATCGAACTAAAACT
1 CAACAATATATATATTAATCGAACTAAAACT
80563030 CAACAATATATATATTAATCGAACTAAAACT
1 CAACAATATATATATTAATCGAACTAAAACT
80563061 CA
1 CA
80563063 CGCAGAATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.52, C:0.17, G:0.03, T:0.28
Consensus pattern (31 bp):
CAACAATATATATATTAATCGAACTAAAACT
Found at i:80565634 original size:31 final size:31
Alignment explanation
Indices: 80565542--80565635 Score: 111
Period size: 31 Copynumber: 3.1 Consensus size: 31
80565532 TCACTGGTAG
* **
80565542 GACTTAAA-AAAAA-TTTTTAATAGCCCAGT
1 GACTTAAATAAAAACTTTTAAATAGTTCAGT
*
80565571 GACTTAAATAAAAACTTTTAAATAGTTGAGT
1 GACTTAAATAAAAACTTTTAAATAGTTCAGT
* * *
80565602 GACTTAAATGAAAACTTTTGAATGGTTCAGT
1 GACTTAAATAAAAACTTTTAAATAGTTCAGT
80565633 GAC
1 GAC
80565636 CATTTTGTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 8 0.15
30 5 0.09
31 42 0.76
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (31 bp):
GACTTAAATAAAAACTTTTAAATAGTTCAGT
Found at i:80567364 original size:12 final size:12
Alignment explanation
Indices: 80567330--80567364 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
80567320 TGGAAACTTC
80567330 GAAGAACAAGAA
1 GAAGAACAAGAA
*
80567342 GAGGAACAAGAA
1 GAAGAACAAGAA
*
80567354 GAAGAATAAGA
1 GAAGAACAAGA
80567365 GTGGAAGGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.63, C:0.06, G:0.29, T:0.03
Consensus pattern (12 bp):
GAAGAACAAGAA
Found at i:80582098 original size:13 final size:14
Alignment explanation
Indices: 80582080--80582126 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
80582070 TTTAAATTTT
80582080 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
80582093 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
*
80582108 ATTTTAAATAATATT
1 ATTTT-AATAATATA
80582123 ATTT
1 ATTT
80582127 GAAGATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 10 0.36
14 1 0.04
15 12 0.43
16 5 0.18
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:80582106 original size:16 final size:16
Alignment explanation
Indices: 80582084--80582120 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
80582074 AATTTTATTT
80582084 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
80582101 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
80582116 TAATA
1 TAATA
80582121 TTATTTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:80588086 original size:41 final size:40
Alignment explanation
Indices: 80588041--80588137 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 40
80588031 TTTTGTTTTA
*
80588041 AAAAATTAAGAATAAATTAAAATTAAATATAAATAATTA-AT
1 AAAAA-TAA-AATAAATTAAAATTAAATAAAAATAATTATAT
* * *
80588082 AAAAAATATATTAATATTAATATTAAATAAAAATAATTATAT
1 -AAAAATAAAATAA-ATTAAAATTAAATAAAAATAATTATAT
*
80588124 TAAAATAAAATAAA
1 AAAAATAAAATAAA
80588138 AAATCCTCCC
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
40 5 0.11
41 34 0.74
42 7 0.15
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (40 bp):
AAAAATAAAATAAATTAAAATTAAATAAAAATAATTATAT
Found at i:80588123 original size:25 final size:27
Alignment explanation
Indices: 80588083--80588139 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 27
80588073 ATAATTAATA
* *
80588083 AAAAATATATTAATATTAATATTAAAT
1 AAAAATATATTAATATTAAAATAAAAT
80588110 AAAAATA-ATT-ATATTAAAATAAAAT
1 AAAAATATATTAATATTAAAATAAAAT
80588135 AAAAA
1 AAAAA
80588140 ATCCTCCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 18 0.64
26 3 0.11
27 7 0.25
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAAATATATTAATATTAAAATAAAAT
Found at i:80589651 original size:21 final size:22
Alignment explanation
Indices: 80589626--80589666 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80589616 GAAGGAAGAG
80589626 CTTAAT-AGATAC-TTTTAAGGA
1 CTTAATCAGA-ACATTTTAAGGA
80589647 CTTAATCAGAACATTTTAAG
1 CTTAATCAGAACATTTTAAG
80589667 CTTTTAGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (22 bp):
CTTAATCAGAACATTTTAAGGA
Found at i:80602586 original size:17 final size:17
Alignment explanation
Indices: 80602561--80602594 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80602551 GAAAAAAAAT
*
80602561 GTACTCGTATCGAACAC
1 GTACCCGTATCGAACAC
*
80602578 GTACCCGTATCTAACAC
1 GTACCCGTATCGAACAC
80602595 TCACCAAAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (17 bp):
GTACCCGTATCGAACAC
Found at i:80602644 original size:15 final size:15
Alignment explanation
Indices: 80602624--80602655 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
80602614 ATGGACTTTA
80602624 TCCCTTTTTTAACTC
1 TCCCTTTTTTAACTC
80602639 TCCCTTTTTTAACTC
1 TCCCTTTTTTAACTC
80602654 TC
1 TC
80602656 TTGCTCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.34, G:0.00, T:0.53
Consensus pattern (15 bp):
TCCCTTTTTTAACTC
Found at i:80607812 original size:109 final size:109
Alignment explanation
Indices: 80607605--80607802 Score: 279
Period size: 110 Copynumber: 1.8 Consensus size: 109
80607595 TCATACAAGC
* * *
80607605 ATCCAATACTCACCCCTAGTCCAAGTAACAAACTAGCATCCTAATGTATACATATATTATACAAA
1 ATCCAATACTCACCCCAAGTCCAAGTAACAAACTAGCATCATAAAGTATACATATATTATACAAA
* *
80607670 ACTGACATTGAACGTACCCTTATCAGAAATATACTCATACACAT
66 ACTGACATTGAACATACCCTCATCAGAAATATACTCATACACAT
* ** * * *
80607714 ATCCAATACTCACCCCAAGTTCGGGTAACAAATTGGCATTCATAAAGTATGCATATATTATACAA
1 ATCCAATACTCACCCCAAGTCCAAGTAACAAACTAGCA-TCATAAAGTATACATATATTATACAA
*
80607779 AACTGAGATTGAACATACCCTCAT
65 AACTGACATTGAACATACCCTCAT
80607803 TGGACTATAC
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
109 32 0.42
110 44 0.58
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (109 bp):
ATCCAATACTCACCCCAAGTCCAAGTAACAAACTAGCATCATAAAGTATACATATATTATACAAA
ACTGACATTGAACATACCCTCATCAGAAATATACTCATACACAT
Found at i:80610428 original size:19 final size:19
Alignment explanation
Indices: 80610401--80610438 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
80610391 TTGATTGAAT
*
80610401 CATTCAAAAT-TAGTAAAAA
1 CATTAAAAATCTAG-AAAAA
80610420 CATTAAAAATCTAGAAAAA
1 CATTAAAAATCTAGAAAAA
80610439 AAATAGATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.24
Consensus pattern (19 bp):
CATTAAAAATCTAGAAAAA
Found at i:80610497 original size:10 final size:10
Alignment explanation
Indices: 80610467--80610500 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
80610457 AATGAACAAA
80610467 TTTATAAAAT
1 TTTATAAAAT
*
80610477 TTTAATTAAAT
1 TTT-ATAAAAT
80610488 TTTATAAAAT
1 TTTATAAAAT
80610498 TTT
1 TTT
80610501 TAATTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTATAAAAT
Found at i:80614837 original size:15 final size:16
Alignment explanation
Indices: 80614817--80614846 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80614807 TGTAAAAGTG
80614817 TAATTTT-ATTTTTAT
1 TAATTTTAATTTTTAT
80614832 TAATTTTAATTTTTA
1 TAATTTTAATTTTTA
80614847 ATTTTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TAATTTTAATTTTTAT
Found at i:80616747 original size:21 final size:19
Alignment explanation
Indices: 80616721--80616769 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 19
80616711 GGGTAGGTAC
80616721 AATATGCATTCCCCATGTCTG
1 AATATGCATT--CCATGTCTG
*
80616742 AATATGTA-TCCATGTCTG
1 AATATGCATTCCATGTCTG
80616760 AATATGCATT
1 AATATGCATT
80616770 GACGATTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 16 0.64
19 1 0.04
20 1 0.04
21 7 0.28
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (19 bp):
AATATGCATTCCATGTCTG
Found at i:80617047 original size:16 final size:16
Alignment explanation
Indices: 80617026--80617057 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80617016 TACCATGTTC
*
80617026 AAATGTATATTGATAT
1 AAATGTACATTGATAT
80617042 AAATGTACATTGATAT
1 AAATGTACATTGATAT
80617058 GAGTGTTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (16 bp):
AAATGTACATTGATAT
Found at i:80628364 original size:33 final size:33
Alignment explanation
Indices: 80628327--80628395 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
80628317 TAATGTATTT
*
80628327 AGATTTAATGGTGTACAATGCATGTTTAGGTAG
1 AGATTTAATGGTGTACAATGCACGTTTAGGTAG
80628360 AGATTTAATGGTGTACAATGCACGTTTAGGTAG
1 AGATTTAATGGTGTACAATGCACGTTTAGGTAG
80628393 AGA
1 AGA
80628396 AAATATTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (33 bp):
AGATTTAATGGTGTACAATGCACGTTTAGGTAG
Found at i:80628883 original size:24 final size:24
Alignment explanation
Indices: 80628851--80628897 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
80628841 GCTAACGGTG
80628851 ACGACTTTTAAAATTGACACTATA
1 ACGACTTTTAAAATTGACACTATA
80628875 ACGACTTTTAAAATTGACACTAT
1 ACGACTTTTAAAATTGACACTAT
80628898 TGTGTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (24 bp):
ACGACTTTTAAAATTGACACTATA
Found at i:80631311 original size:31 final size:29
Alignment explanation
Indices: 80631274--80631349 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 29
80631264 CACCACAAAA
* *
80631274 TTTTTGAAATTTTTGTTAGATCCCTGAAAGT
1 TTTTTGAAATTTTTATTAG-TACCT-AAAGT
* *
80631305 TTTTTGAAAGTTTTAATTAGTACCTCAAGT
1 TTTTTGAAA-TTTTTATTAGTACCTAAAGT
*
80631335 TTTTTGAAAATTTTA
1 TTTTTGAAATTTTTA
80631350 ATTAAATCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
29 4 0.11
30 13 0.34
31 13 0.34
32 8 0.21
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (29 bp):
TTTTTGAAATTTTTATTAGTACCTAAAGT
Found at i:80632228 original size:37 final size:37
Alignment explanation
Indices: 80632178--80632251 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
80632168 GGATTGTTAC
80632178 AACAACAGCAATACCAACCGAATTAAAATAAAAAATT
1 AACAACAGCAATACCAACCGAATTAAAATAAAAAATT
80632215 AACAACAGCAATACCAACCGAATTAAAATAAAAAATT
1 AACAACAGCAATACCAACCGAATTAAAATAAAAAATT
80632252 TCAAATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.59, C:0.19, G:0.05, T:0.16
Consensus pattern (37 bp):
AACAACAGCAATACCAACCGAATTAAAATAAAAAATT
Found at i:80638982 original size:58 final size:58
Alignment explanation
Indices: 80638876--80638988 Score: 131
Period size: 58 Copynumber: 1.9 Consensus size: 58
80638866 TAATATATCA
* **
80638876 TTTGGTACCTGAGTTTTGTTTCAATGTTTAATTAGGTACTCAAGTTTTTTTTGTCCTAG
1 TTTGGTACCTGAGTTTGGTTTCAATGTCCAATTAGGTACTCAAG-TTTTTTTGTCCTAG
* * * *
80638935 TTTGGTA-CTTAGTTTGGTTTCAATGTCCACTTTGGTACTTGAA-TTTTTTTGTCC
1 TTTGGTACCTGAGTTTGGTTTCAATGTCCAATTAGGTAC-TCAAGTTTTTTTGTCC
80638989 CAACTAAGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
57 11 0.24
58 25 0.54
59 10 0.22
ACGTcount: A:0.17, C:0.13, G:0.19, T:0.51
Consensus pattern (58 bp):
TTTGGTACCTGAGTTTGGTTTCAATGTCCAATTAGGTACTCAAGTTTTTTTGTCCTAG
Found at i:80646015 original size:8 final size:8
Alignment explanation
Indices: 80646002--80646026 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80645992 AATTATTTGT
80646002 TTTTTATA
1 TTTTTATA
80646010 TTTTTATA
1 TTTTTATA
80646018 TTTTTATA
1 TTTTTATA
80646026 T
1 T
80646027 ATTCGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTATA
Found at i:80646397 original size:14 final size:14
Alignment explanation
Indices: 80646378--80646407 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80646368 ACCATTGCAC
80646378 TATATCATAAGCAT
1 TATATCATAAGCAT
*
80646392 TATATCTTAAGCAT
1 TATATCATAAGCAT
80646406 TA
1 TA
80646408 GAGAGCATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (14 bp):
TATATCATAAGCAT
Found at i:80654877 original size:40 final size:38
Alignment explanation
Indices: 80654795--80654874 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 38
80654785 ATTATACTTG
* *
80654795 AATTTAATTTAAATAATAAAAAATATTTTTAAAATTTA
1 AATTTAATTTAAATAATAAAAAATATTATTAAAATATA
* *
80654833 AATTTAATTATAAAATTATATAAAATATTAATTAAAATATA
1 AATTTAATT-T-AAATAATAAAAAATATT-ATTAAAATATA
80654874 A
1 A
80654875 TTTTTAATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
38 9 0.26
39 1 0.03
40 15 0.43
41 10 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (38 bp):
AATTTAATTTAAATAATAAAAAATATTATTAAAATATA
Found at i:80662874 original size:16 final size:17
Alignment explanation
Indices: 80662847--80662879 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
80662837 TTTTTATATT
80662847 ATCCAGCGTGTCATCTC
1 ATCCAGCGTGTCATCTC
80662864 ATCCA-CGTGTCATCTC
1 ATCCAGCGTGTCATCTC
80662880 TAAACCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.18, C:0.36, G:0.15, T:0.30
Consensus pattern (17 bp):
ATCCAGCGTGTCATCTC
Found at i:80671907 original size:28 final size:29
Alignment explanation
Indices: 80671874--80671928 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
80671864 CGAACATGAA
80671874 TTAATATA-C-TATAATAAAAATATTTTTT
1 TTAATATATCATA-AATAAAAATATTTTTT
*
80671902 TTAATATATCATAAATTAAAATATTTT
1 TTAATATATCATAAATAAAAATATTTT
80671929 AATTTTGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 14 0.58
30 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (29 bp):
TTAATATATCATAAATAAAAATATTTTTT
Found at i:80672112 original size:22 final size:22
Alignment explanation
Indices: 80672067--80672115 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
80672057 ATTATCTATA
*
80672067 ATATTACATTTATTTCTGTTAG
1 ATATTACATTTATTTCTGTAAG
*
80672089 ATATTACTTTTATTT-TGATAAG
1 ATATTACATTTATTTCTG-TAAG
80672111 ATATT
1 ATATT
80672116 TTATTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (22 bp):
ATATTACATTTATTTCTGTAAG
Found at i:80672176 original size:34 final size:32
Alignment explanation
Indices: 80672113--80672177 Score: 78
Period size: 34 Copynumber: 2.0 Consensus size: 32
80672103 TTGATAAGAT
* *
80672113 ATTTTATTAAAAAAGTTGATGATATATCTATG
1 ATTTTATTAAAAAAATTAATGATATATCTATG
80672145 ATTTTATTTAAAAAAAATTAATGA-ATAATCTAT
1 ATTTTA-TT-AAAAAAATTAATGATAT-ATCTAT
80672178 AAAATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 6 0.21
33 4 0.14
34 18 0.64
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (32 bp):
ATTTTATTAAAAAAATTAATGATATATCTATG
Found at i:80678157 original size:26 final size:26
Alignment explanation
Indices: 80678106--80678159 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
80678096 TACTAAAAAT
* *
80678106 TCAATTCAACTAGTTTATACTAATTC
1 TCAAATCAACTAGTTGATACTAATTC
*
80678132 TCAAATCAACTAGTTCGATA-TTATTC
1 TCAAATCAACTAGTT-GATACTAATTC
80678158 TC
1 TC
80678160 TAAACCATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (26 bp):
TCAAATCAACTAGTTGATACTAATTC
Found at i:80683171 original size:32 final size:32
Alignment explanation
Indices: 80683134--80683203 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
80683124 CATTGTACTC
* *
80683134 AAAATTAGTTAATTTTAATTCTTATATTTTTT
1 AAAATTAGTCAATTTTAATTCATATATTTTTT
* * * * *
80683166 TAAATTGGTCGATTTTAGTTCATGTATTTTTT
1 AAAATTAGTCAATTTTAATTCATATATTTTTT
80683198 AAAATT
1 AAAATT
80683204 TGAAATTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (32 bp):
AAAATTAGTCAATTTTAATTCATATATTTTTT
Found at i:80683607 original size:3 final size:3
Alignment explanation
Indices: 80683593--80683653 Score: 77
Period size: 3 Copynumber: 19.7 Consensus size: 3
80683583 AAAAAGGGAA
*
80683593 AAT AAA AAT AAT AAT AAT AAT AAT AAT AATT AAT AATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AA-T AAT AAT AAT
* *
80683640 AGT AAT AGT AAT AA
1 AAT AAT AAT AAT AA
80683654 GTTTAATATT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
3 44 0.88
4 6 0.12
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:80684874 original size:87 final size:90
Alignment explanation
Indices: 80684783--80684957 Score: 232
Period size: 87 Copynumber: 2.0 Consensus size: 90
80684773 TTGGTAATTG
* **
80684783 AACTTCACACTTTTTCTTAATTTGGTA-TCTAAA-TTTTT-TTGTCCAATTTGATACCCAAACTT
1 AACTTCACACTTTTTCTTAAATTGGTACT-TAAACTTTTTAGAGTCCAATTTGATACCCAAACTT
80684845 GACAC-TTTTCTTAATTTGGTACCTA
65 GACACTTTTTCTTAATTTGGTACCTA
* * * *
80684870 AACTTTACATTTTTTCTTAAATTGGTACTTAAACTTTTTGAGAGTCCAATTTGGTACCTAAACTT
1 AACTTCACACTTTTTCTTAAATTGGTACTTAAACTTTTT-AGAGTCCAATTTGATACCCAAACTT
*
80684935 GACTCTTTTTCTTAATTTGGTAC
65 GACACTTTTTCTTAATTTGGTAC
80684958 ATAATTTTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
87 28 0.37
88 6 0.08
90 24 0.32
91 17 0.23
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (90 bp):
AACTTCACACTTTTTCTTAAATTGGTACTTAAACTTTTTAGAGTCCAATTTGATACCCAAACTTG
ACACTTTTTCTTAATTTGGTACCTA
Found at i:80684888 original size:31 final size:31
Alignment explanation
Indices: 80684783--80684906 Score: 107
Period size: 31 Copynumber: 4.2 Consensus size: 31
80684773 TTGGTAATTG
* * *
80684783 AACTTCACACTTTTTCTTAATTTGGTATCTA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
* * * *
80684814 AA-TTT---TTTTGTC-CAATTTGATACCCA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
* *
80684840 AACTTGACA-CTTTTCTTAATTTGGTACCTA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
* *
80684870 AACTTTACATTTTTTCTTAAATTGGTACTTA
1 AACTTTACATTTTTTCTTAATTTGGTACCTA
80684901 AACTTT
1 AACTTT
80684907 TTGAGAGTCC
Statistics
Matches: 70, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
26 12 0.17
27 7 0.10
29 4 0.06
30 21 0.30
31 26 0.37
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (31 bp):
AACTTTACATTTTTTCTTAATTTGGTACCTA
Found at i:80684955 original size:31 final size:30
Alignment explanation
Indices: 80684783--80684957 Score: 96
Period size: 31 Copynumber: 5.9 Consensus size: 30
80684773 TTGGTAATTG
* *
80684783 AACTTCACACTTTTTCTTAATTTGGTATCTA
1 AACTT-ACTCTTTTTCTTAATTTGGTACCTA
* * *
80684814 AA-TT--T-TTTTGTC-CAATTTGATACCCA
1 AACTTACTCTTTT-TCTTAATTTGGTACCTA
*
80684840 AACTTGACAC-TTTTCTTAATTTGGTACCTA
1 AACTT-ACTCTTTTTCTTAATTTGGTACCTA
* *
80684870 AACTTTACAT-TTTTTCTTAAATTGGTACTTA
1 AAC-TTAC-TCTTTTTCTTAATTTGGTACCTA
** ***** *
80684901 AACTTTTTGAGAGTC-CAATTTGGTACCTA
1 AACTTACTCTTTTTCTTAATTTGGTACCTA
80684930 AACTTGACTCTTTTTCTTAATTTGGTAC
1 AACTT-ACTCTTTTTCTTAATTTGGTAC
80684958 ATAATTTTTT
Statistics
Matches: 102, Mismatches: 29, Indels: 26
0.65 0.18 0.17
Matches are distributed among these distances:
26 16 0.16
27 4 0.04
29 19 0.19
30 28 0.27
31 35 0.34
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (30 bp):
AACTTACTCTTTTTCTTAATTTGGTACCTA
Found at i:80687394 original size:48 final size:47
Alignment explanation
Indices: 80687304--80687394 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
80687294 ATGAAAAATC
* * **
80687304 AAAATATATAAAAATACATAATTTTTTTAAAACGTAATAATAAATTT
1 AAAATATATAAAAATAAATAATTTTTTAAAAAAATAATAATAAATTT
80687351 AAAATATATAAAAATAAATACATATTTTTAAAAAAAT-ATAATAA
1 AAAATATATAAAAATAAATA-AT-TTTTTAAAAAAATAATAATAA
80687395 CAAATTTCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
47 19 0.50
48 9 0.24
49 10 0.26
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.35
Consensus pattern (47 bp):
AAAATATATAAAAATAAATAATTTTTTAAAAAAATAATAATAAATTT
Found at i:80693727 original size:39 final size:39
Alignment explanation
Indices: 80693646--80693731 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
80693636 AGGAAATTAC
* * *
80693646 ATTTTTTTATTTTTATAATTTTTAAAAGTTTAAATTAAA
1 ATTTTATTATTTTTATAATTTTTAAAAGATTAAAGTAAA
* **
80693685 ATTTTATTATTTTTTATTATTTTTAAAA-ATTAAAGTGTA
1 ATTTTATTA-TTTTTATAATTTTTAAAAGATTAAAGTAAA
80693724 ATTTTATT
1 ATTTTATT
80693732 TTTATTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 23 0.57
40 17 0.43
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.60
Consensus pattern (39 bp):
ATTTTATTATTTTTATAATTTTTAAAAGATTAAAGTAAA
Found at i:80693757 original size:16 final size:16
Alignment explanation
Indices: 80693738--80693793 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 16
80693728 TATTTTTATT
*
80693738 AATTTAAGATTTTAAA
1 AATTTAAAATTTTAAA
80693754 AATTTTAAAAATTTTAAA
1 AA-TTT-AAAATTTTAAA
**
80693772 AA-TTAAAATAATAAA
1 AATTTAAAATTTTAAA
80693787 AATTTAA
1 AATTTAA
80693794 TTTTAGAGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
15 11 0.32
16 8 0.24
17 3 0.09
18 12 0.35
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
AATTTAAAATTTTAAA
Found at i:80693763 original size:8 final size:9
Alignment explanation
Indices: 80693746--80693775 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
80693736 TTAATTTAAG
80693746 ATTTTAAAA
1 ATTTTAAAA
80693755 ATTTTAAAA
1 ATTTTAAAA
80693764 ATTTTAAAA
1 ATTTTAAAA
80693773 ATT
1 ATT
80693776 AAAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:80694465 original size:65 final size:66
Alignment explanation
Indices: 80694383--80694514 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 66
80694373 AATTATTTTA
*
80694383 ACTTCACCTTTGAGATTGAATATTGAACCTAAAACCGAT-AAATTAATTATTTAGTTGATTTGAT
1 ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
80694447 C
66 C
80694448 ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
1 ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
80694513 C
66 C
80694514 A
1 A
80694515 TCGGTCTGAT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
65 38 0.58
66 27 0.42
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (66 bp):
ACTTCACCCTTGAGATTGAATATTGAACCTAAAACCGATAAAATTAATTATTTAGTTGATTTGAT
C
Found at i:80702227 original size:16 final size:17
Alignment explanation
Indices: 80702197--80702231 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
80702187 ATTAAGTAAA
80702197 AATATTATAAGATTTAT
1 AATATTATAAGATTTAT
*
80702214 AATA-TATAATATTTAT
1 AATATTATAAGATTTAT
80702230 AA
1 AA
80702232 AAATGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
AATATTATAAGATTTAT
Found at i:80710727 original size:5 final size:6
Alignment explanation
Indices: 80710713--80710737 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
80710703 AAATCTCAAC
80710713 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
80710738 TTTAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:80716734 original size:16 final size:16
Alignment explanation
Indices: 80716690--80716736 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
80716680 GACCCAAATT
* *
80716690 AAAATAAATTGGATTC
1 AAAATAAATTGAACTC
*
80716706 AAAAT-GATCTGAACTC
1 AAAATAAAT-TGAACTC
80716722 AAAATAAATTGAACT
1 AAAATAAATTGAACT
80716737 TGACTCGAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.28
Consensus pattern (16 bp):
AAAATAAATTGAACTC
Found at i:80723297 original size:26 final size:26
Alignment explanation
Indices: 80723215--80723305 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
80723205 ATTACATATT
*
80723215 ATTTTATTAAATTATATTTAATAATA
1 ATTTTATTAAAATATATTTAATAATA
* * ** *
80723241 ATTATGTTAAAATATGGTTAA-ATTA
1 ATTTTATTAAAATATATTTAATAATA
* *
80723266 TTTTTTAATAAAATATATTTAATAATA
1 -ATTTTATTAAAATATATTTAATAATA
80723293 ATTTTATTAAAAT
1 ATTTTATTAAAAT
80723306 TTAATAACAA
Statistics
Matches: 48, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
25 3 0.06
26 42 0.88
27 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (26 bp):
ATTTTATTAAAATATATTTAATAATA
Found at i:80723496 original size:16 final size:16
Alignment explanation
Indices: 80723475--80723531 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
80723465 TGAATTACTT
80723475 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
**
80723491 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCC
*
80723507 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
80723523 ATTAGAGCT
1 ATTACAGCT
80723532 AACCAAACGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:80724060 original size:27 final size:28
Alignment explanation
Indices: 80724020--80724072 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
80724010 TAGTAAACTT
*
80724020 TAAAATACACATAAAATTATAAAAATTA
1 TAAAATACACATAAAAATATAAAAATTA
*
80724048 TAAAAT-CATATAAAAATATAAAAAT
1 TAAAATACACATAAAAATATAAAAAT
80724073 ATTTATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (28 bp):
TAAAATACACATAAAAATATAAAAATTA
Found at i:80724071 original size:8 final size:8
Alignment explanation
Indices: 80724030--80724074 Score: 54
Period size: 8 Copynumber: 5.2 Consensus size: 8
80724020 TAAAATACAC
*
80724030 ATAAAATT
1 ATAAAAAT
80724038 ATAAAAATT
1 ATAAAAA-T
80724047 ATAAAATCAT
1 ATAAAA--AT
80724057 ATAAAAAT
1 ATAAAAAT
80724065 ATAAAAAT
1 ATAAAAAT
80724073 AT
1 AT
80724075 TTATAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
8 18 0.55
9 7 0.21
10 7 0.21
11 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (8 bp):
ATAAAAAT
Found at i:80724328 original size:51 final size:53
Alignment explanation
Indices: 80724211--80724329 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 53
80724201 TTAAATAAGT
* * *
80724211 TAAAGTCTTCAAGGAATGAATTATGCATGCTATGGAGCTTTTCGTTATGCTATGC
1 TAAAGTGTTCAAGAAAGGAATTATGCATGCTA--GAGCTTTTCGTTATGCTATGC
* *
80724266 TAAAGTGTTCAAGAAAGGAATTATGCATGCTA-CGCTTTT-GTTATGCTATGT
1 TAAAGTGTTCAAGAAAGGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
*
80724317 TGAAGTGTTCAAG
1 TAAAGTGTTCAAG
80724330 CAATAAATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
51 23 0.40
52 6 0.10
55 29 0.50
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (53 bp):
TAAAGTGTTCAAGAAAGGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
Found at i:80724339 original size:51 final size:53
Alignment explanation
Indices: 80724211--80724340 Score: 156
Period size: 51 Copynumber: 2.5 Consensus size: 53
80724201 TTAAATAAGT
* *
80724211 TAAAGTCTTCAAGGAATGAATTATGCATGCTATGGAGCTTTTCGTTATGCTATGC
1 TAAAGTGTTCAAGAAATGAATTATGCATGCTA--GAGCTTTTCGTTATGCTATGC
* * *
80724266 TAAAGTGTTCAAGAAAGGAATTATGCATGCTA-CGCTTTT-GTTATGCTATGT
1 TAAAGTGTTCAAGAAATGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
* * *
80724317 TGAAGTGTTCAAGCAATAAATTAT
1 TAAAGTGTTCAAGAAATGAATTAT
80724341 ATATATATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
51 31 0.47
52 6 0.09
55 29 0.44
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (53 bp):
TAAAGTGTTCAAGAAATGAATTATGCATGCTAGAGCTTTTCGTTATGCTATGC
Found at i:80732026 original size:17 final size:17
Alignment explanation
Indices: 80732006--80732044 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
80731996 TTTTAATTTG
80732006 AATTTTGGTTTTCTTAA
1 AATTTTGGTTTTCTTAA
80732023 AATTTTGGTTTTCTTAA
1 AATTTTGGTTTTCTTAA
80732040 AATTT
1 AATTT
80732045 GGAGCAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.59
Consensus pattern (17 bp):
AATTTTGGTTTTCTTAA
Found at i:80734580 original size:19 final size:19
Alignment explanation
Indices: 80734556--80734593 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
80734546 GAAATGAATA
*
80734556 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
80734575 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
80734594 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:80735511 original size:19 final size:20
Alignment explanation
Indices: 80735478--80735517 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
80735468 ATATATATAT
80735478 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
80735497 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
80735517 A
1 A
80735518 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:80736412 original size:37 final size:37
Alignment explanation
Indices: 80736351--80736497 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
80736341 TACGTATGAT
*
80736351 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
80736386 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
80736423 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
80736460 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
80736497 C
1 C
80736498 GAAGCTATTA
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 9 0.09
36 4 0.04
37 90 0.87
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:80736512 original size:46 final size:46
Alignment explanation
Indices: 80736459--80736584 Score: 153
Period size: 52 Copynumber: 2.6 Consensus size: 46
80736449 ATAAGTGTAG
*
80736459 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTA
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
** * *
80736505 TTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
1 CCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
80736557 CCACTTATCACTTTGTCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
80736585 AGTACTCAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
46 25 0.37
48 1 0.01
50 1 0.01
52 40 0.60
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (46 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
Found at i:80736527 original size:52 final size:52
Alignment explanation
Indices: 80736471--80736570 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
80736461 ACTTATCACT
* **
80736471 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCAC
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTTCCAC
* *
80736523 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTT
80736571 GTCACTTGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTTCCAC
Found at i:80739074 original size:28 final size:28
Alignment explanation
Indices: 80739043--80739098 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
80739033 ATTAGTAAAC
* *
80739043 TATAAAATACATATAAAATTATAAAAAT
1 TATAAAATACATAAAAAAATATAAAAAT
*
80739071 TATAAAATGCATAAAAAAATATAAAAAT
1 TATAAAATACATAAAAAAATATAAAAAT
80739099 ATTTACAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (28 bp):
TATAAAATACATAAAAAAATATAAAAAT
Found at i:80741123 original size:26 final size:26
Alignment explanation
Indices: 80741101--80741182 Score: 69
Period size: 29 Copynumber: 3.0 Consensus size: 26
80741091 AAAAAATGTG
* *
80741101 ATATTTAATAATAAATTTAAAATATA
1 ATATATAATAAAAAATTTAAAATATA
80741127 ATATATAATAAAAAATATTTATAAGA-ATA
1 ATATATAAT-AAAAA-ATTTA-AA-ATATA
*
80741156 ATA-ATTATATAAAAAATATAAAATATA
1 ATATA-TA-ATAAAAAATTTAAAATATA
80741183 TTGGTTTAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
26 9 0.20
27 9 0.20
28 10 0.22
29 15 0.33
30 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (26 bp):
ATATATAATAAAAAATTTAAAATATA
Found at i:80741682 original size:17 final size:17
Alignment explanation
Indices: 80741660--80741720 Score: 86
Period size: 17 Copynumber: 3.5 Consensus size: 17
80741650 AATCATATCT
80741660 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
* *
80741677 TCTAAGATTGCAATTATA
1 TCTAAGATTG-TATCATA
*
80741695 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
80741712 TCTAAGATT
1 TCTAAGATT
80741721 ACATATCATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
17 23 0.62
18 14 0.38
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:80745617 original size:21 final size:21
Alignment explanation
Indices: 80745585--80745625 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
80745575 GAACAATTGG
80745585 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
80745606 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
80745626 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:80747873 original size:30 final size:30
Alignment explanation
Indices: 80747846--80747919 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
80747836 TTTTCAAGTG
**
80747846 TGGTGGTATTGAGATTTCTTTTGTCAAGCC
1 TGGTGGTATTGAGATTTCTTTTGTCAAGAA
* *
80747876 TAGTGGTATTGCGATTTCTTTTGTCAAGAA
1 TGGTGGTATTGAGATTTCTTTTGTCAAGAA
80747906 TGGTGGTATTGAGA
1 TGGTGGTATTGAGA
80747920 CTGTATATGG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.20, C:0.09, G:0.28, T:0.42
Consensus pattern (30 bp):
TGGTGGTATTGAGATTTCTTTTGTCAAGAA
Found at i:80750410 original size:20 final size:20
Alignment explanation
Indices: 80750385--80750434 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
80750375 TGGCTTAAAA
80750385 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
80750405 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
80750422 GTGGTAGTGGATT
1 TTGGTAGTGGATT
80750435 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:80755048 original size:20 final size:20
Alignment explanation
Indices: 80755023--80755072 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
80755013 TGGCTTAAAA
80755023 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
80755043 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
80755060 GTGGTAGTGGATT
1 TTGGTAGTGGATT
80755073 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:80758587 original size:16 final size:15
Alignment explanation
Indices: 80758562--80758592 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
80758552 TGAGATAAAC
80758562 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
80758577 AAAAAAGAAAAGAAAA
1 AAAAAA-AAAAGAAAA
80758593 GTCAAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:80758593 original size:10 final size:11
Alignment explanation
Indices: 80758562--80758592 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
80758552 TGAGATAAAC
80758562 AAAAAAAAAAG
1 AAAAAAAAAAG
80758573 AAAAAAAAAAG
1 AAAAAAAAAAG
80758584 AAAAGAAAA
1 AAAA-AAAA
80758593 GTCAAGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:80760541 original size:34 final size:34
Alignment explanation
Indices: 80760485--80760565 Score: 126
Period size: 34 Copynumber: 2.4 Consensus size: 34
80760475 CCATCTCAAT
*
80760485 ACAGTATCAAATATGCAGTAGGGCCTTAGCCCATC
1 ACAGTATC-AGTATGCAGTAGGGCCTTAGCCCATC
* *
80760520 ACAGTATCAGTATGCATTAGGGTCTTAGCCCATC
1 ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
80760554 ACAGTATCAGTA
1 ACAGTATCAGTA
80760566 GTAGTCATGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
34 35 0.81
35 8 0.19
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (34 bp):
ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
Found at i:80763280 original size:26 final size:25
Alignment explanation
Indices: 80763241--80763350 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 25
80763231 TGATACAAAT
*
80763241 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
80763267 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
80763293 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATG-GTTAGGTAAATGTTTCA
80763319 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
80763345 TGATAA
1 TGATAA
80763351 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
25 3 0.04
26 76 0.95
27 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:80763300 original size:13 final size:13
Alignment explanation
Indices: 80763284--80763350 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 13
80763274 GGATTAGGTA
80763284 AATGTTTCATGAT
1 AATGTTTCATGAT
*
80763297 AATGTGTT-A-GGT
1 AATGT-TTCATGAT
80763309 AAATGTTTCATGAT
1 -AATGTTTCATGAT
*
80763323 AATGGTTT-A-GGT
1 AAT-GTTTCATGAT
80763335 AAATGTTTCATGAT
1 -AATGTTTCATGAT
80763349 AA
1 AA
80763351 GAATTTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
12 10 0.24
13 22 0.52
14 10 0.24
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (13 bp):
AATGTTTCATGAT
Found at i:80764865 original size:26 final size:26
Alignment explanation
Indices: 80764836--80764888 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
80764826 TTTACAGTTT
80764836 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
80764862 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
80764888 T
1 T
80764889 GCATGTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:80766458 original size:39 final size:40
Alignment explanation
Indices: 80766415--80766495 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
80766405 AAATCTATTT
* *
80766415 ATAACAACTTAATTTT-TATTTAAATTTATATATAATTCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
80766454 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
80766494 AT
1 AT
80766496 CTTATAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.41
40 23 0.59
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (40 bp):
ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
Found at i:80766711 original size:50 final size:50
Alignment explanation
Indices: 80766656--80766751 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
80766646 ATTCCACTTT
**
80766656 TGGCCAAGAAAATGAAAATAAAGACAAAAAGTTGTTCAATTATTGATTTA
1 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGATTTA
80766706 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGA
1 TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGA
80766752 GTCTTAGCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.25
Consensus pattern (50 bp):
TGGCCAAGAAAATGAAAATAAAGACAAAAAACTGTTCAATTATTGATTTA
Found at i:80771990 original size:73 final size:72
Alignment explanation
Indices: 80771858--80772003 Score: 175
Period size: 73 Copynumber: 2.0 Consensus size: 72
80771848 GAAATTAAAA
* ** * * * ** *
80771858 TAAATAAATTTAGTGAAATTAATATAATGAGTTCCAGCAACTCCTCCATGGAAGTAATAAAATAT
1 TAAATAAATGTAGCCAAAATAATATAATGAGGTCCAACAACTCCTCCATAAAAGAAAT-AAATAT
80771923 TAATATTT
65 TAATATTT
* *
80771931 TAAATAAATGTAGCCAAAATAATATAATGAGGTCCAACAACTCGTCCTTAAAAGAAATAAATATT
1 TAAATAAATGTAGCCAAAATAATATAATGAGGTCCAACAACTCCTCCATAAAAGAAATAAATATT
*
80771996 GATATTT
66 AATATTT
80772003 T
1 T
80772004 GATGTTTTTG
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
72 14 0.23
73 47 0.77
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (72 bp):
TAAATAAATGTAGCCAAAATAATATAATGAGGTCCAACAACTCCTCCATAAAAGAAATAAATATT
AATATTT
Found at i:80774475 original size:10 final size:11
Alignment explanation
Indices: 80774445--80774474 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
80774435 TGAGATAAAC
80774445 AAAAAAAAAGA
1 AAAAAAAAAGA
80774456 AAAAAAAAAGA
1 AAAAAAAAAGA
80774467 AAATAAAA
1 AAA-AAAA
80774475 GTCAAGAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:80777228 original size:121 final size:121
Alignment explanation
Indices: 80777002--80777239 Score: 293
Period size: 121 Copynumber: 2.0 Consensus size: 121
80776992 GATATGGGGA
*
80777002 TTTGTCGATTTTCACACAGTCGTGTCCCTTGGGCACACGAGTGTGTGAATTTAGGAATTAAGGAT
1 TTTGTCGATTTTCACACAGCCGTGTCCCTTGGGCACACGAGTGTGTGAATTTAGGAATTAAGGAT
* * **
80777067 TTAGGGATTTGGAGTCACATGGCCTGGCCACATGGCCGTGTAGCCGATTTGGTAAT
66 TGAGGGATTTGGAGTCACACGGCCTGGCCACACAGCCGTGTAGCCGATTTGGTAAT
* * * * *
80777123 TTTGTTGATTTTCACACGGCCGTGTCCAC-TGGGCACATGGGTGTGTGAATTTTA-GAATTAGGG
1 TTTGTCGATTTTCACACAGCCGTGTCC-CTTGGGCACACGAGTGTGTGAA-TTTAGGAATTAAGG
* * * * *
80777186 ATTCGA-GGATTTTGAGTCACACGGCCTGGCCATACAGTCGTGTGGCTGATTTGG
64 ATT-GAGGGATTTGGAGTCACACGGCCTGGCCACACAGCCGTGTAGCCGATTTGG
80777240 GGATTTAGGG
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
121 93 0.94
122 6 0.06
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (121 bp):
TTTGTCGATTTTCACACAGCCGTGTCCCTTGGGCACACGAGTGTGTGAATTTAGGAATTAAGGAT
TGAGGGATTTGGAGTCACACGGCCTGGCCACACAGCCGTGTAGCCGATTTGGTAAT
Found at i:80779769 original size:18 final size:18
Alignment explanation
Indices: 80779743--80779782 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
80779733 TTTTTATCAA
80779743 TAATCAAATTCTACCCCT
1 TAATCAAATTCTACCCCT
* *
80779761 TAATTAAATTCTATCCCT
1 TAATCAAATTCTACCCCT
80779779 TAAT
1 TAAT
80779783 ACATGGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATCAAATTCTACCCCT
Found at i:80786129 original size:20 final size:20
Alignment explanation
Indices: 80786104--80786153 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
80786094 TGGCTTAAAA
80786104 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
80786124 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
80786141 GTGGTAGTGGATT
1 TTGGTAGTGGATT
80786154 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:80790768 original size:20 final size:20
Alignment explanation
Indices: 80790743--80790792 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
80790733 TGGCTTAAAA
80790743 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
80790763 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
80790780 GTGGTAGTGGATT
1 TTGGTAGTGGATT
80790793 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:80792548 original size:16 final size:17
Alignment explanation
Indices: 80792516--80792548 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80792506 AAATTTCATC
*
80792516 ACAAATTATTATTTGTG
1 ACAAATTATTATATGTG
80792533 ACAAATT-TTATATGTG
1 ACAAATTATTATATGTG
80792549 GCACAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (17 bp):
ACAAATTATTATATGTG
Found at i:80792614 original size:16 final size:17
Alignment explanation
Indices: 80792593--80792625 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80792583 TTGTGTCGAG
80792593 TTAAATT-ATACTACAA
1 TTAAATTGATACTACAA
*
80792609 TTAAATTGTTACTACAA
1 TTAAATTGATACTACAA
80792626 ATGTATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.39
Consensus pattern (17 bp):
TTAAATTGATACTACAA
Found at i:80797214 original size:16 final size:18
Alignment explanation
Indices: 80797195--80797237 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
80797185 ATTGCTTTCA
80797195 TATTTTATTTG-T-TCTT
1 TATTTTATTTGCTCTCTT
*
80797211 TATTCTATTTGTCTCTCTT
1 TATTTTATTTG-CTCTCTT
80797230 TATTTTAT
1 TATTTTAT
80797238 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 10 0.45
18 1 0.05
19 11 0.50
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.70
Consensus pattern (18 bp):
TATTTTATTTGCTCTCTT
Found at i:80810380 original size:9 final size:9
Alignment explanation
Indices: 80810365--80810466 Score: 86
Period size: 9 Copynumber: 11.4 Consensus size: 9
80810355 ATCATGTTCC
80810365 AAAAAAAGA
1 AAAAAAAGA
80810374 CAAAAAAAGA
1 -AAAAAAAGA
*
80810384 TAAAAAAGA
1 AAAAAAAGA
80810393 AAAAAAAGA
1 AAAAAAAGA
***
80810402 AATAATTCG-
1 AA-AAAAAGA
80810411 AAAAAAAGA
1 AAAAAAAGA
*
80810420 AAAGAAAG-
1 AAAAAAAGA
*
80810428 AAAAAATG-
1 AAAAAAAGA
*
80810436 AAAGAAAGA
1 AAAAAAAGA
80810445 AAAAAAAGA
1 AAAAAAAGA
80810454 AAAGAAAA-A
1 AAA-AAAAGA
80810463 AAAA
1 AAAA
80810467 TAGTTTGATG
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
8 16 0.22
9 42 0.57
10 16 0.22
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.05
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:80810396 original size:18 final size:17
Alignment explanation
Indices: 80810365--80810466 Score: 93
Period size: 17 Copynumber: 5.8 Consensus size: 17
80810355 ATCATGTTCC
80810365 AAAAAAAGACAAAAAAAG
1 AAAAAAAGA-AAAAAAAG
80810383 ATAAAAAAGAAAAAAAAG
1 A-AAAAAAGAAAAAAAAG
**
80810401 AAATAATTCG-AAAAAAAG
1 AAA-AA-AAGAAAAAAAAG
*
80810419 AAAAGAAAG-AAAAAATG
1 AAAA-AAAGAAAAAAAAG
*
80810436 AAAGAAAGAAAAAAAAG
1 AAAAAAAGAAAAAAAAG
80810453 AAAAGAAA-AAAAAA
1 AAAA-AAAGAAAAAA
80810467 TAGTTTGATG
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
16 4 0.06
17 30 0.43
18 27 0.39
19 9 0.13
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.05
Consensus pattern (17 bp):
AAAAAAAGAAAAAAAAG
Found at i:80823002 original size:20 final size:20
Alignment explanation
Indices: 80822964--80823006 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
80822954 TAAATTTTAA
* **
80822964 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
80822984 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
80823004 AAA
1 AAA
80823007 ATGAAATCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:80823055 original size:15 final size:15
Alignment explanation
Indices: 80823035--80823064 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80823025 ATAATCCTAA
*
80823035 TAATTATCTTAATAT
1 TAATTATCCTAATAT
80823050 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80823065 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:80824121 original size:9 final size:9
Alignment explanation
Indices: 80824107--80824141 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
80824097 TATACGACGA
*
80824107 CGCGTGAGG
1 CGCGTGTGG
80824116 CGCGTGTGG
1 CGCGTGTGG
*
80824125 CGTGTGTGG
1 CGCGTGTGG
80824134 CGCGTGTG
1 CGCGTGTG
80824142 CAGGTACTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.03, C:0.20, G:0.54, T:0.23
Consensus pattern (9 bp):
CGCGTGTGG
Found at i:80824746 original size:7 final size:7
Alignment explanation
Indices: 80824734--80824800 Score: 73
Period size: 7 Copynumber: 9.1 Consensus size: 7
80824724 ACCTTATTTT
80824734 TATATTA
1 TATATTA
80824741 TATATTA
1 TATATTA
80824748 TATAATTA
1 TAT-ATTA
*
80824756 TTTATTTA
1 TATA-TTA
80824764 TATATTA
1 TATATTA
80824771 TTTATATTA
1 --TATATTA
80824780 T-TATTA
1 TATATTA
*
80824786 TTTATTA
1 TATATTA
80824793 TATATTA
1 TATATTA
80824800 T
1 T
80824801 TTTTCATAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
6 6 0.12
7 27 0.52
8 12 0.23
9 7 0.13
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (7 bp):
TATATTA
Found at i:80824755 original size:15 final size:15
Alignment explanation
Indices: 80824734--80824802 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
80824724 ACCTTATTTT
*
80824734 TATATTATAT-ATTA
1 TATATTATTTAATTA
*
80824748 TATAATTATTTATTTA
1 TAT-ATTATTTAATTA
80824764 TATATTATTTATATTA
1 TATATTATTTA-ATTA
80824780 T-TATTATTT-ATTA
1 TATATTATTTAATTA
80824793 TATATTATTT
1 TATATTATTT
80824803 TTCATAAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
13 5 0.10
14 11 0.23
15 22 0.46
16 10 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATATTATTTAATTA
Found at i:80824768 original size:30 final size:28
Alignment explanation
Indices: 80824727--80824884 Score: 104
Period size: 30 Copynumber: 5.1 Consensus size: 28
80824717 TTTTTAAACC
*
80824727 TTATTTTTATATTATATATTATATAATTAT
1 TTATTTATATATTATATATTAT-T-ATTAT
80824757 TTATTTATATATTATTTATATTATTATTAT
1 TTATTTATATATTA--TATATTATTATTAT
*
80824787 TTATTATATATTATTTTTCATAAATTATTATTAT
1 TTATT-TATA-TA---TT-ATATATTATTATTAT
**
80824821 TT-TACATCATTATTTATATATTATTATTAT
1 TTATTTAT-A-TA-TTATATATTATTATTAT
* *
80824851 TT-TTTACTTGTATTATATACTTATTTTTAT
1 TTATTTA--TATATTATATA-TTATTATTAT
80824881 TTAT
1 TTAT
80824885 ATGTTAATAA
Statistics
Matches: 106, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
29 7 0.07
30 54 0.51
31 9 0.08
32 13 0.12
33 5 0.05
34 15 0.14
35 2 0.02
36 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (28 bp):
TTATTTATATATTATATATTATTATTAT
Found at i:80824781 original size:3 final size:3
Alignment explanation
Indices: 80824727--80824851 Score: 62
Period size: 3 Copynumber: 39.7 Consensus size: 3
80824717 TTTTTAAACC
* *
80824727 TTA TTT TTA -TA TTA TATA TTA -TA TAA TTA TTTA TTTA TATA TTA TT-
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA -TTA T-TA TTA TTA
* *
80824773 TATA TTA TTA TTA TTTA TTA TATA TTA TTT TTCA TAAA TTA TTA TTA
1 T-TA TTA TTA TTA -TTA TTA T-TA TTA TTA TT-A T-TA TTA TTA TTA
* *
80824820 TT- TTA -CA TCA TTA TTTA TATA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TT
80824852 TTTTACTTGT
Statistics
Matches: 97, Mismatches: 10, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
2 8 0.08
3 60 0.62
4 29 0.30
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Done.