Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 252 of 253
Found at i:80825318 original size:2 final size:2
Alignment explanation
Indices: 80825313--80825357 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
80825303 TATTTATATA
80825313 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
80825355 TG T
1 TG T
80825358 CAAAATTGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:80826643 original size:20 final size:20
Alignment explanation
Indices: 80826611--80826648 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80826601 TGTTTTTTTT
80826611 CTTTTTTACTTTAATTTCAA
1 CTTTTTTACTTTAATTTCAA
*
80826631 CTTTATTTA-TTTACTTTC
1 CTTT-TTTACTTTAATTTC
80826649 CTTAGGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63
Consensus pattern (20 bp):
CTTTTTTACTTTAATTTCAA
Found at i:80827568 original size:17 final size:15
Alignment explanation
Indices: 80827548--80827613 Score: 68
Period size: 16 Copynumber: 4.5 Consensus size: 15
80827538 ATCTGAAAAT
80827548 AATAAATAACAAGATAA
1 AATAAATAA-AA-ATAA
*
80827565 AATAAATAAAATTAA
1 AATAAATAAAAATAA
80827580 AATAAAATAAAAAT--
1 AAT-AAATAAAAATAA
80827594 AA-AAATAAAAATAA
1 AATAAATAAAAATAA
80827608 AA-AAAT
1 AATAAAT
80827614 TGGGTTGCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
12 10 0.23
14 8 0.18
15 6 0.14
16 11 0.25
17 9 0.20
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.20
Consensus pattern (15 bp):
AATAAATAAAAATAA
Found at i:80827582 original size:6 final size:6
Alignment explanation
Indices: 80827543--80827610 Score: 66
Period size: 6 Copynumber: 10.7 Consensus size: 6
80827533 TTAATATCTG
* *
80827543 AAAATA ATAAATA ACAAGATA AAATAAA TAAAATT AAAAT- AAAATA AAAATA
1 AAAATA A-AAATA A-AA-ATA AAA-ATA -AAAATA AAAATA AAAATA AAAATA
80827595 AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAA
80827611 AATTGGGTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
5 5 0.09
6 28 0.53
7 13 0.25
8 7 0.13
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:80827584 original size:11 final size:11
Alignment explanation
Indices: 80827551--80827609 Score: 68
Period size: 11 Copynumber: 5.3 Consensus size: 11
80827541 TGAAAATAAT
80827551 AAATAACAAGATA
1 AAATAA-AA-ATA
80827564 AAAT--AAATA
1 AAATAAAAATA
*
80827573 AAATTAAAATA
1 AAATAAAAATA
80827584 AAATAAAAATAA
1 AAATAAAAAT-A
80827596 AAATAAAAATA
1 AAATAAAAATA
80827607 AAA
1 AAA
80827610 AAATTGGGTT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
9 7 0.17
10 2 0.05
11 18 0.43
12 11 0.26
13 4 0.10
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:80827613 original size:20 final size:21
Alignment explanation
Indices: 80827543--80827613 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
80827533 TTAATATCTG
80827543 AAAATAATAAATAACAAGATAAA
1 AAAATAA-AAATAA-AAGATAAA
* * *
80827566 ATAAATAAAATTAAAATAAAATA
1 A-AAATAAAAATAAAAGATAA-A
80827589 AAAATAAAAATAAAA-ATAAA
1 AAAATAAAAATAAAAGATAAA
80827609 AAAAT
1 AAAAT
80827614 TGGGTTGCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
20 6 0.15
21 3 0.07
22 18 0.44
23 8 0.20
24 6 0.15
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (21 bp):
AAAATAAAAATAAAAGATAAA
Found at i:80830979 original size:46 final size:46
Alignment explanation
Indices: 80830912--80831087 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
80830902 TGTAACCCGC
*
80830912 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * * *
80830958 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* * * *
80831004 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
** *
80831051 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
80831088 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 69 0.66
47 32 0.30
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:80831032 original size:93 final size:93
Alignment explanation
Indices: 80830919--80831090 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
80830909 CGCCCATAAG
* * *
80830919 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
80830984 ACGAGCTCAGATGCCTAGTTACATTTCA
66 ACGAGCTCAGATGCCTAGTTACATTTCA
*
80831012 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
80831077 ACGAGTTCGGATGC
66 ACGAGCTCAGATGC
80831091 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATTTCA
Found at i:80834163 original size:27 final size:26
Alignment explanation
Indices: 80834133--80834195 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
80834123 AGATAATTAA
80834133 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
80834160 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
80834187 AATATAAAT
1 AATA-AAAT
80834196 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:80834182 original size:15 final size:15
Alignment explanation
Indices: 80834162--80834191 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80834152 ATAATCCTAA
*
80834162 TAATTATCTTAATAT
1 TAATTATCCTAATAT
80834177 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80834192 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:80835758 original size:17 final size:17
Alignment explanation
Indices: 80835736--80835775 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
80835726 TCATATTGAC
*
80835736 TTTTTAAAATTTTAAAT
1 TTTTTAAAATTTAAAAT
*
80835753 TTTTTATAATTTAAAAT
1 TTTTTAAAATTTAAAAT
80835770 TATTTT
1 T-TTTT
80835776 TTGATGTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTTAAAATTTAAAAT
Found at i:80846644 original size:18 final size:18
Alignment explanation
Indices: 80846621--80846682 Score: 97
Period size: 18 Copynumber: 3.4 Consensus size: 18
80846611 TCCAACTACT
80846621 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
80846639 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
80846657 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
80846675 GTAAACGT
1 GTATACGT
80846683 CGTATTCCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:80858896 original size:18 final size:19
Alignment explanation
Indices: 80858861--80858898 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80858851 AAAATCACTC
80858861 TTTAAAAAAAATTGAATTT
1 TTTAAAAAAAATTGAATTT
*
80858880 TTTAAAAATAATT-AATTT
1 TTTAAAAAAAATTGAATTT
80858898 T
1 T
80858899 GGGAATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAAAAAAAATTGAATTT
Found at i:80862265 original size:33 final size:33
Alignment explanation
Indices: 80862223--80862287 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
80862213 TGACCCTTTC
80862223 AATCTTTATTGGGAATTGAACAAGTGTTTTTTT
1 AATCTTTATTGGGAATTGAACAAGTGTTTTTTT
80862256 AATCTTTATTGGGAATTGAACAAGTGTTTTTT
1 AATCTTTATTGGGAATTGAACAAGTGTTTTTT
80862288 ACGACAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.06, G:0.18, T:0.48
Consensus pattern (33 bp):
AATCTTTATTGGGAATTGAACAAGTGTTTTTTT
Found at i:80877920 original size:23 final size:24
Alignment explanation
Indices: 80877875--80877937 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 24
80877865 ATTTCAGATC
*
80877875 TATTTATATTATTTTTAAAAATTATA
1 TATTTATATTATTTTT-AAATTTA-A
*
80877901 TATTTATATTGTTTTT-AATTTAA
1 TATTTATATTATTTTTAAATTTAA
*
80877924 TATTTA-ATAATTTT
1 TATTTATATTATTTT
80877938 ATATATTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 6 0.18
23 7 0.21
24 5 0.15
26 15 0.45
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
TATTTATATTATTTTTAAATTTAA
Found at i:80880518 original size:132 final size:132
Alignment explanation
Indices: 80880371--80880609 Score: 379
Period size: 132 Copynumber: 1.8 Consensus size: 132
80880361 ACCTAAAGAA
* * *
80880371 ATATTCGATTGTTTTGAACAAACGAGAAATTATAACCCAGCATGATAGGGCACTATTCCGCGAAT
1 ATATTCGATTATTTTGAACAAACGAGAAATTATAACCCAACACGATAGGGCACTATTCCGCGAAT
*
80880436 TGCCAAATATCGAATATCGTCTTCGTTTTAAACAATTTTTAAAAGGCATGAGTGAAATTTTGAAG
66 TGCCAAATATCGAATATCGTCTTCATTTTAAACAATTTTTAAAAGGCATGAGTGAAATTTTGAAG
80880501 GG
131 GG
* * * *
80880503 ATATTCGATTATTTTGAGCAAACGCGAAATTGTAACCCAACACGTTAGGGCACTATTCCGCGAAT
1 ATATTCGATTATTTTGAACAAACGAGAAATTATAACCCAACACGATAGGGCACTATTCCGCGAAT
* * *
80880568 TGCCAAATATCGAGTCTCGTCTTCATTTTAAAGAATTTTTAA
66 TGCCAAATATCGAATATCGTCTTCATTTTAAACAATTTTTAA
80880610 TAATTGTGAA
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 96 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (132 bp):
ATATTCGATTATTTTGAACAAACGAGAAATTATAACCCAACACGATAGGGCACTATTCCGCGAAT
TGCCAAATATCGAATATCGTCTTCATTTTAAACAATTTTTAAAAGGCATGAGTGAAATTTTGAAG
GG
Found at i:80881905 original size:9 final size:9
Alignment explanation
Indices: 80881882--80881938 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
80881872 TAGTAATGAT
80881882 ATAATAATG
1 ATAATAATG
* *
80881891 ACAATAGTG
1 ATAATAATG
*
80881900 ATAATAATA
1 ATAATAATG
*
80881909 ATAATAATA
1 ATAATAATG
*
80881918 ATAAT-ATCA
1 ATAATAAT-G
80881927 ATAATAATG
1 ATAATAATG
80881936 ATA
1 ATA
80881939 TGATAATAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.32
Consensus pattern (9 bp):
ATAATAATG
Found at i:80881906 original size:3 final size:3
Alignment explanation
Indices: 80881900--80881947 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
80881890 GACAATAGTG
* *
80881900 ATA ATA ATA ATA ATA ATA ATA AT- ATCA ATA ATA ATG AT- ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
80881944 ATA A
1 ATA A
80881948 ATAAAGTGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 4 0.10
3 34 0.85
4 2 0.05
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:80881911 original size:15 final size:14
Alignment explanation
Indices: 80881893--80881947 Score: 60
Period size: 15 Copynumber: 3.9 Consensus size: 14
80881883 TAATAATGAC
80881893 AATAGTGATAATAAT
1 AATA-TGATAATAAT
80881908 AATA--ATAATAAT
1 AATATGATAATAAT
*
80881920 AATATCAATAATAAT
1 AATAT-GATAATAAT
*
80881935 GATATGATAATAA
1 AATATGATAATAA
80881948 ATAAAGTGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
12 12 0.34
14 7 0.20
15 16 0.46
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (14 bp):
AATATGATAATAAT
Found at i:80881914 original size:18 final size:19
Alignment explanation
Indices: 80881870--80881951 Score: 62
Period size: 18 Copynumber: 4.3 Consensus size: 19
80881860 ATATAATACC
*
80881870 AATAGTAATGAT-ATAATA
1 AATAATAATGATAATAATA
* *
80881888 ATGACAATAGTGATAATAAT-
1 A--ATAATAATGATAATAATA
* *
80881908 AATAATAATAATAAT-ATC
1 AATAATAATGATAATAATA
80881926 AATAATAATGATATGATAATA
1 AATAATAATGATA--ATAATA
80881947 AATAA
1 AATAA
80881952 AGTGAGTAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
17 2 0.04
18 24 0.49
20 11 0.22
21 12 0.24
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (19 bp):
AATAATAATGATAATAATA
Found at i:80912607 original size:26 final size:26
Alignment explanation
Indices: 80912577--80912629 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
80912567 GCCAACTGTC
80912577 ATCGAAGATGATTTGGAGAAGAGGCT
1 ATCGAAGATGATTTGGAGAAGAGGCT
80912603 ATCGAAGATGATTTGGAGAAGAGGCT
1 ATCGAAGATGATTTGGAGAAGAGGCT
80912629 A
1 A
80912630 ACTCTCAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.08, G:0.34, T:0.23
Consensus pattern (26 bp):
ATCGAAGATGATTTGGAGAAGAGGCT
Found at i:80914220 original size:35 final size:35
Alignment explanation
Indices: 80914181--80914274 Score: 161
Period size: 35 Copynumber: 2.7 Consensus size: 35
80914171 CCACAAAATG
*
80914181 GTTAAAAACAATGAATGGTTATTCCTACTCCATTC
1 GTTAAAAACATTGAATGGTTATTCCTACTCCATTC
*
80914216 GTTAAAAACATTGAATGGTTATTCCTACTGCATTC
1 GTTAAAAACATTGAATGGTTATTCCTACTCCATTC
*
80914251 GTTAAAAACATTGAATGGGTATTC
1 GTTAAAAACATTGAATGGTTATTC
80914275 AGCAGTCAAC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 56 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (35 bp):
GTTAAAAACATTGAATGGTTATTCCTACTCCATTC
Found at i:80918720 original size:9 final size:10
Alignment explanation
Indices: 80918698--80918732 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
80918688 TTTAGAATAT
*
80918698 TAAAAATTAC
1 TAAAAATTAG
80918708 TAAAAATT-G
1 TAAAAATTAG
80918717 TAAAAATTAG
1 TAAAAATTAG
80918727 TAAAAA
1 TAAAAA
80918733 CATTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.29
Consensus pattern (10 bp):
TAAAAATTAG
Found at i:80918739 original size:19 final size:18
Alignment explanation
Indices: 80918696--80918750 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
80918686 ATTTTAGAAT
*
80918696 ATTAAAAATTACTAAAAA
1 ATTAAAAATTAGTAAAAA
*
80918714 TTGTAAAAATTAGTAAAAA
1 AT-TAAAAATTAGTAAAAA
* *
80918733 CATTAAAATTTTGTAAAA
1 -ATTAAAAATTAGTAAAA
80918751 GTATATAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 1 0.03
19 28 0.93
20 1 0.03
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (18 bp):
ATTAAAAATTAGTAAAAA
Found at i:80918840 original size:17 final size:18
Alignment explanation
Indices: 80918784--80918875 Score: 64
Period size: 17 Copynumber: 5.1 Consensus size: 18
80918774 TAGAATTGTA
* *
80918784 AAAATTATTTAAAATATTGT
1 AAAATT-TTAAAAATA-TAT
* * *
80918804 AAAATTTTCAACATCT-T
1 AAAATTTTAAAAATATAT
80918821 AAAATTTTAAAAAT-TAT
1 AAAATTTTAAAAATATAT
* *
80918838 AAAA-ATTAAAATATATTT
1 AAAATTTTAAAA-ATATAT
80918856 AAAATTTATAAAAATATAT
1 AAAATTT-TAAAAATATAT
80918875 A
1 A
80918876 CTTCATCCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
16 7 0.12
17 20 0.34
18 7 0.12
19 13 0.22
20 11 0.19
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.40
Consensus pattern (18 bp):
AAAATTTTAAAAATATAT
Found at i:80920124 original size:30 final size:30
Alignment explanation
Indices: 80920090--80920152 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
80920080 ACTTATTTTA
* * *
80920090 TTGTTAATTTTGTTTTTGTTTTAAAGATAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
80920120 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
80920150 TTG
1 TTG
80920153 CTTGTTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:80925386 original size:129 final size:126
Alignment explanation
Indices: 80925246--80925751 Score: 550
Period size: 129 Copynumber: 3.9 Consensus size: 126
80925236 GAACCCATTA
*
80925246 TTTT-AATAATTTCATTCATGAATTTCTAAA-CAAATATATGAA-AAAAAACAAGAGAAAACCCT
1 TTTTAAATAATTTCATTCATGAATCTC-AAAGCAAATATATGAAGAAAAAACAAGAGAAAACCC-
* *
80925308 TTTTGTAAAAAAAATTTCATTCATGAATTTCAAAGCAAATATATGGA-AAAACAAGAGAAAACTC
64 TTTT-T-AAAAAAA--TCATTCATGAAATTCAAAACAAATATAT-GATAAAACAAGAGAAAACTC
80925372 TCT
124 TCT
* * * *
80925375 TTTT-AGTAATTTTATTCATGAATTTCAGAA-CAAATATATGAA-CAAAAACAAGAGAAAACCTT
1 TTTTAAATAATTTCATTCATGAATCTCA-AAGCAAATATATGAAGAAAAAACAAGAGAAAACC--
* * ** * * * *
80925437 TTTTTTAATAATTTCATTCATGAATTTTAAAACAAA-ATATGAAAAAACAAGAGAAAAC-CATTT
63 CTTTTTAAAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAAACTC--TC
80925500 T
126 T
*
80925501 TTTTAAAAATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAGAGAGAGAAAACC
1 TTTT--AAATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAACA-AGAGAAAACC
* *
80925566 C-TTTCAAAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAG-AAA-TCCCT
63 CTTTTTAAAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAAACTCTCT
* *
80925627 TTTTGAAAAAAAATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAAAAGAGAGA
1 TTTT------AAATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAACAAGAGAAA
*
80925692 ACCCTTTTTAAAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAATAGAAA
60 ACCCTTTTTAAAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAA
80925752 TCCCTTTTTG
Statistics
Matches: 328, Mismatches: 29, Indels: 38
0.83 0.07 0.10
Matches are distributed among these distances:
124 3 0.01
125 19 0.06
126 32 0.10
128 39 0.12
129 114 0.35
130 109 0.33
131 12 0.04
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.29
Consensus pattern (126 bp):
TTTTAAATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAACAAGAGAAAACCCTT
TTTAAAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAAACTCTCT
Found at i:80925674 original size:130 final size:127
Alignment explanation
Indices: 80925250--80925786 Score: 615
Period size: 130 Copynumber: 4.1 Consensus size: 127
80925240 CCATTATTTT
*
80925250 AATAATTTCATTCATGAATTTCTAAACAAATATATGAAAAAAAACAAGAGAAAACCCTTTTTGTA
1 AATAATTTCATTCATGAATCTC-AAACAAATATATGAAAAAAAACAAGAGAAAACCC-TTTT-T-
* * *
80925315 AAAAAAATTTCATTCATGAATTTCAAAGCAAATATATGGA-AAAACAAGAGAAAACTCTCTTTTT
62 AAAAAAA--TCATTCATGAAATTCAAAACAAATATAT-GATAAAACAAGAG-AAA-TCCCTTTTT
80925379 ------
122 AAAAAA
* * * * *
80925379 AGTAATTTTATTCATGAATTTCAGAACAAATATATGAACAAAAACAAGAGAAAACCTTTTTTTTA
1 AATAATTTCATTCATGAATCTCA-AACAAATATATGAAAAAAAACAAGAGAAAACC--CTTTTTA
* ** * * * * * ***
80925444 ATAATTTCATTCATGAATTTTAAAACAAA-ATATGAAAAAACAAGAGAAAACCATTTTTTTTAAA
63 AAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTAAAAAA
* *
80925508 AATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAGAGAGAGAAAACCC-TTTCA
1 AATAATTTCATTCATGAATCTCAAA-CAAATATATGAA-AAAAAACA-AGAGAAAACCCTTTTTA
80925572 AAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTGAAAAA
63 AAAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTT-AAAAA
80925637 A
127 A
* *
80925638 AATAATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAAAAGAGAGAACCCTTTTTAA
1 AATAATTTCATTCATGAATCTCAAA-CAAATATATGAA-AAAAAACAAGAGAAAACCCTTTTTAA
*
80925703 AAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAATAGAAATCCCTTTTTGAAAAAA
64 AAAAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTT-AAAAAA
80925768 AATAATTTCATTCATGAAT
1 AATAATTTCATTCATGAAT
80925787 TAGCTTTAAA
Statistics
Matches: 358, Mismatches: 34, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
123 6 0.02
124 5 0.01
125 14 0.04
126 21 0.06
128 35 0.10
129 120 0.34
130 147 0.41
131 10 0.03
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.29
Consensus pattern (127 bp):
AATAATTTCATTCATGAATCTCAAACAAATATATGAAAAAAAACAAGAGAAAACCCTTTTTAAAA
AAATCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTAAAAAA
Found at i:80925769 original size:63 final size:62
Alignment explanation
Indices: 80925256--80925770 Score: 429
Period size: 64 Copynumber: 8.0 Consensus size: 62
80925246 TTTTAATAAT
* *
80925256 TTCATTCATGAATTTCTAAACAAATATATGAAAAAAAACAAGAGAAAACCCTTTTTGTAAAAAAA
1 TTCATTCATGAAATTCAAAACAAATATATG--AAAAAACAAGAGAAAACCC-TTTT-TAAAAAAA
80925321 A
62 A
* * * ** *
80925322 TTTCATTCATGAATTTCAAAGCAAATATATGGAAAAACAAGAGAAAACTCTCTTTTT--AGTAAT
1 -TTCATTCATGAAATTCAAAACAAATATATGAAAAAACAAGAGAAAAC-C-CTTTTTAAAAAAAA
* * * * ** * *
80925385 TTTATTCATGAATTTCAGAACAAATATATGAACAAAAACAAGAGAAAACCTTTTTTTTAATAAT
1 TTCATTCATGAAATTCAAAACAAATATATG-A-AAAAACAAGAGAAAACCCTTTTTAAAAAAAA
* * *
80925449 TTCATTCATGAATTTTAAAACAAA-ATATGAAAAAACAAGAGAAAACCATTTTTTTTAAAAATAA
1 TTCATTCATGAAATTCAAAACAAATATATGAAAAAACAAGAGAAAACC---CTTTTTAAAAA-AA
*
80925513 T
62 A
* * *
80925514 TTCATTCATG-AATCTCAAAGCAAATATATGAAGAAAAAAGAGAGAGAAAACCC--TTTCAAAAA
1 TTCATTCATGAAAT-TCAAAACAAATATAT---GAAAAAACA-AGAGAAAACCCTTTTTAAAAAA
80925576 AA
61 AA
* *
80925578 -TCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTGAAAAAAAATA
1 TTCATTCATGAAATTCAAAACAAATATATGAAAAAACAAGAGAAAACCCTTTTT---AAAAAA-A
80925642 A
62 A
* * *
80925643 TTTCATTCATG-AATCTCAAAGCAAATATATGAAGAAAAAAAAAGAGAGAACCCTTTTT-AAAAA
1 -TTCATTCATGAAAT-TCAAAACAAATATAT---GAAAAAACAAGAGAAAACCCTTTTTAAAAAA
80925706 AA
61 AA
* * *
80925708 -TCATTCATGAAATTCAAAACAAATATATGATAAAACAATAGAAATCCCTTTTTGAAAAAAAA
1 TTCATTCATGAAATTCAAAACAAATATATGAAAAAACAAGAGAAAACCCTTTTT-AAAAAAAA
80925770 T
1 T
80925771 AATTTCATTC
Statistics
Matches: 374, Mismatches: 41, Indels: 70
0.77 0.08 0.14
Matches are distributed among these distances:
59 10 0.03
60 27 0.07
61 20 0.05
62 40 0.11
63 55 0.15
64 65 0.17
65 49 0.13
66 17 0.05
67 52 0.14
69 8 0.02
70 31 0.08
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (62 bp):
TTCATTCATGAAATTCAAAACAAATATATGAAAAAACAAGAGAAAACCCTTTTTAAAAAAAA
Found at i:80925778 original size:63 final size:62
Alignment explanation
Indices: 80925259--80925774 Score: 269
Period size: 62 Copynumber: 8.0 Consensus size: 62
80925249 TAATAATTTC
* * * * *
80925259 ATTCATGAATTTCTAAACAAATATATGAAAAAAAACAAGAGAAAACCCTTTTTGTAAAAAAAATT
1 ATTCATGAAATTCAAAACAAATATATG--ATAAAACAAAAGAAATCCCTTTTTG-AAAAAAAA--
*
80925324 TC
61 TA
* * * * ** ** *
80925326 ATTCATGAATTTCAAAGCAAATATATGGA-AAAACAAGAGAAAACTCTCTTTTT--AGTAATTTT
1 ATTCATGAAATTCAAAACAAATATAT-GATAAAACAAAAG-AAA-TCCCTTTTTGAAAAAAAATA
* * * * * * ** * ** *
80925388 ATTCATGAATTTCAGAACAAATATATGAACAAAAACAAGAGAAAACCTTTTTTTTAATAATTTC
1 ATTCATGAAATTCAAAACAAATATATG-A-TAAAACAAAAGAAATCCCTTTTTGAAAAAAAATA
* * * * * * * *
80925452 ATTCATGAATTTTAAAACAAA-ATATGAAAAAACAAGAGAAAACCATTTTTTTTAAAAATAATTT
1 ATTCATGAAATTCAAAACAAATATATGATAAAACAAAAGAAATCC--CTTTTTGAAAAA-AA-AT
*
80925516 C
62 A
* * * * *
80925517 ATTCATG-AATCTCAAAGCAAATATATGAAGAAAAAAGAGAGAGAAAACCC--TTT-CAAAAAAA
1 ATTCATGAAAT-TCAAAACAAATATATG-ATAAAACA-A-A-AGAAATCCCTTTTTGAAAAAAAA
*
80925578 TC
61 TA
*
80925580 ATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTGAAAAAAAATA
1 ATTCATGAAATTCAAAACAAATATATGATAAAACAAAAGAAATCCCTTTTTGAAAAAAAATA
* * * * *
80925642 ATTTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAAAAGAGAGAACCCTTTTT--AAAA
1 A-TTCA-TGA--AAT-TCAAAACAAATATATG-ATAAAACAAAAGA-A-ATCCCTTTTTGAAAAA
*
80925705 AAATC
58 AAATA
*
80925710 ATTCATGAAATTCAAAACAAATATATGATAAAACAATAGAAATCCCTTTTTGAAAAAAAATA
1 ATTCATGAAATTCAAAACAAATATATGATAAAACAAAAGAAATCCCTTTTTGAAAAAAAATA
80925772 ATT
1 ATT
80925775 TCATTCATGA
Statistics
Matches: 366, Mismatches: 51, Indels: 69
0.75 0.10 0.14
Matches are distributed among these distances:
59 8 0.02
60 9 0.02
61 23 0.06
62 69 0.19
63 61 0.17
64 52 0.14
65 32 0.09
66 17 0.05
67 56 0.15
68 21 0.06
69 1 0.00
70 17 0.05
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (62 bp):
ATTCATGAAATTCAAAACAAATATATGATAAAACAAAAGAAATCCCTTTTTGAAAAAAAATA
Found at i:80926144 original size:4 final size:4
Alignment explanation
Indices: 80926137--80926184 Score: 64
Period size: 4 Copynumber: 12.5 Consensus size: 4
80926127 CACATATGAA
* *
80926137 TATG TATG --TG TATG TGTG TATG TATG TATG TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80926183 TA
1 TA
80926185 CCTTGAGCTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
4 36 0.95
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:80930247 original size:120 final size:119
Alignment explanation
Indices: 80930034--80930393 Score: 526
Period size: 120 Copynumber: 3.0 Consensus size: 119
80930024 TTAATAATTA
* * * * * * *
80930034 CATTGGATTTCAATTAAATTTTGAGTTGAGTTGGATTGGATTTTTAAATAAAGGTAAAGTTCTAC
1 CATTGGATTTTAACTAAATCTCGAGTTGAGTTGG-TTGGACTTTTAAACAGAGGTAAAGTTCTAC
* * * *
80930099 TAACATAATTTTTTCCATGCACAATAAAAGATAAAAGTGTTTTTCTCATTTTGGT
65 CAACGTAGTTTTTTCCATTCACAATAAAAGATAAAAGTGTTTTTCTCATTTTGGT
80930154 CATTGGATTTTAACTAAATCTCGAGTTGAGTTGAGTTGGACTTTTAAACAGAGGTAAAGTTCTAC
1 CATTGGATTTTAACTAAATCTCGAGTTGAGTTG-GTTGGACTTTTAAACAGAGGTAAAGTTCTAC
80930219 CAACGTAGTTTTTTCCATTCACAATAAAAGATAAAAGTGTTTTTCTCATTTTGGT
65 CAACGTAGTTTTTTCCATTCACAATAAAAGATAAAAGTGTTTTTCTCATTTTGGT
* * * *
80930274 CATTAGATTTTAACTAAATCTCAAGTTGAGTTGTGTTGAACTTTTAAACAGAGGTAAAGTTCTAT
1 CATTGGATTTTAACTAAATCTCGAGTTGAGTTG-GTTGGACTTTTAAACAGAGGTAAAGTTCTAC
* *
80930339 CAACGTAG-TTTTT-CATTCACAATAAAAGACAAAAGTATTTTTCTCATTTTGGT
65 CAACGTAGTTTTTTCCATTCACAATAAAAGATAAAAGTGTTTTTCTCATTTTGGT
80930392 CA
1 CA
80930394 AATCTTTCAA
Statistics
Matches: 221, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
118 40 0.18
119 5 0.02
120 175 0.79
121 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (119 bp):
CATTGGATTTTAACTAAATCTCGAGTTGAGTTGGTTGGACTTTTAAACAGAGGTAAAGTTCTACC
AACGTAGTTTTTTCCATTCACAATAAAAGATAAAAGTGTTTTTCTCATTTTGGT
Found at i:80930560 original size:130 final size:130
Alignment explanation
Indices: 80930274--80930631 Score: 398
Period size: 130 Copynumber: 2.7 Consensus size: 130
80930264 TCATTTTGGT
* * *
80930274 CATTAGATTTTAACTAAATCTCAAGTTGAGTTGTGTTGAACTTTTAAACAGAGGTAAAGTTCTA-
1 CATTAGATTTTAACTAAATCTAAAGTTGAGTTGAGTTGAACTTTTAAACAGAGGTAAAATTCTAC
* * * *
80930338 TCAACGTAG-TTTTTCATTCACAATAAAAGACAAAAGTATTTTTCTCATTTTGGTCAAATCTTTC
66 T-AACGTAGTTTTTTTATTCACAAT-------AAAAGTATTTTTCTCATTTTGATAAAATCCTTC
80930402 AATAATTA
123 AATAATTA
* ** * * * * *
80930410 CGTTAGATTTTAACTAAATCTTGAGTTTAGTTGGGGTGGACTTTTAAATAGAGGTAAAATTCTAC
1 CATTAGATTTTAACTAAATCTAAAGTTGAGTTGAGTTGAACTTTTAAACAGAGGTAAAATTCTAC
* *
80930475 TAACATAGTTTTTTTATTCACAATAAAAGTGTTTTTCTCATTTTGATAAAATCCTTCAATAATTA
66 TAACGTAGTTTTTTTATTCACAATAAAAGTATTTTTCTCATTTTGATAAAATCCTTCAATAATTA
* * * *
80930540 CATTAGATTTCAACTAAATCTAAAGTTGAGTTGAATTAAACTTTTAAACAAAGGT-AAATTCTAC
1 CATTAGATTTTAACTAAATCTAAAGTTGAGTTGAGTTGAACTTTTAAACAGAGGTAAAATTCTAC
** *
80930604 GGACGTAATTTTTTTCATTCACAATAAA
66 TAACGTAGTTTTTTT-ATTCACAATAAA
80930632 TTGAACTCGA
Statistics
Matches: 188, Mismatches: 31, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
129 20 0.11
130 92 0.49
136 61 0.32
137 15 0.08
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (130 bp):
CATTAGATTTTAACTAAATCTAAAGTTGAGTTGAGTTGAACTTTTAAACAGAGGTAAAATTCTAC
TAACGTAGTTTTTTTATTCACAATAAAAGTATTTTTCTCATTTTGATAAAATCCTTCAATAATTA
Found at i:80944048 original size:13 final size:13
Alignment explanation
Indices: 80944030--80944073 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
80944020 TTTTATTTAT
80944030 TTATTTATTATTA
1 TTATTTATTATTA
*
80944043 TTATTTTTTATTA
1 TTATTTATTATTA
80944056 TTA-TTATT-TTCA
1 TTATTTATTATT-A
80944068 TTATTT
1 TTATTT
80944074 TCATTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 2 0.07
12 8 0.30
13 17 0.63
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:80944054 original size:16 final size:16
Alignment explanation
Indices: 80944026--80944065 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 16
80944016 CTACTTTTAT
80944026 TTATTTATTTATTATTA
1 TTATTT-TTTATTATTA
80944043 TTATTTTTTATTATTA
1 TTATTTTTTATTATTA
80944059 TTATTTT
1 TTATTTT
80944066 CATTATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 17 0.74
17 6 0.26
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TTATTTTTTATTATTA
Found at i:80944073 original size:9 final size:8
Alignment explanation
Indices: 80944020--80944079 Score: 52
Period size: 9 Copynumber: 7.0 Consensus size: 8
80944010 GCTGGCCTAC
80944020 TTTTATT-
1 TTTTATTA
80944027 TATTTATTTA
1 T-TTTA-TTA
80944037 TTATTATTA
1 TT-TTATTA
80944046 TTTT-TTA
1 TTTTATTA
80944053 TTATTATTA
1 TT-TTATTA
80944062 TTTTCATTA
1 TTTT-ATTA
80944071 TTTTCATTA
1 TTTT-ATTA
80944080 AATTCCGGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
7 6 0.13
8 10 0.22
9 26 0.57
10 4 0.09
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTATTA
Found at i:80944720 original size:22 final size:23
Alignment explanation
Indices: 80944706--80944755 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
80944696 TATTCACCAA
80944706 ATAAATAATTATTA-TCATACAAT
1 ATAAATAATT-TTATTCATACAAT
* *
80944729 ATAAATAATTTTATTTATATAAT
1 ATAAATAATTTTATTCATACAAT
80944752 ATAA
1 ATAA
80944756 GTTACGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAATAATTTTATTCATACAAT
Found at i:80946433 original size:16 final size:17
Alignment explanation
Indices: 80946412--80946445 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
80946402 TTATAAAAAT
*
80946412 ATTAAAA-AATTTTAAA
1 ATTAAAATAATTATAAA
80946428 ATTAAAATAATTATAAA
1 ATTAAAATAATTATAAA
80946445 A
1 A
80946446 AAATAGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTAAAATAATTATAAA
Found at i:80946446 original size:28 final size:28
Alignment explanation
Indices: 80946394--80946449 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
80946384 TAACAAATAA
*
80946394 TTTAAAATTTATAAAAATATTAAAAAAT
1 TTTAAAATTTATAAAAATATAAAAAAAT
80946422 TTTAAAA-TTA-AAATAATTATAAAAAAAT
1 TTTAAAATTTATAAA-AA-TATAAAAAAAT
80946450 AGTATGAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 3 0.12
27 5 0.20
28 17 0.68
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (28 bp):
TTTAAAATTTATAAAAATATAAAAAAAT
Found at i:80950163 original size:2 final size:2
Alignment explanation
Indices: 80950158--80950190 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
80950148 TGTATATATA
80950158 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
80950191 GGTTTCAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:80951394 original size:30 final size:29
Alignment explanation
Indices: 80951338--80951395 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
80951328 AAAATTGTAT
*
80951338 TTTAGTCTTCTTAAAAGGAAAAAAAATTG
1 TTTAGTCTTCTTAAAAAGAAAAAAAATTG
* * *
80951367 TTTAGTTCTTTTTAAAAATAAATAAAATT
1 TTTAG-TCTTCTTAAAAAGAAAAAAAATT
80951396 ATAAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (29 bp):
TTTAGTCTTCTTAAAAAGAAAAAAAATTG
Found at i:80956636 original size:25 final size:25
Alignment explanation
Indices: 80956607--80956658 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
80956597 ACTTTATTTA
80956607 AATATAAA-TTCGATATTCAAAACTC
1 AATATAAATTTCGA-ATTCAAAACTC
* *
80956632 AATATAAATTTTGAATTCTAAACTC
1 AATATAAATTTCGAATTCAAAACTC
80956657 AA
1 AA
80956659 ACTACTACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (25 bp):
AATATAAATTTCGAATTCAAAACTC
Found at i:80959756 original size:21 final size:22
Alignment explanation
Indices: 80959712--80959756 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80959702 AGTATAAATA
*
80959712 TATATACATAAATCATATAAGTT
1 TATATACAT-AATCATACAAGTT
*
80959735 TATATACAT-ATCATACATGTT
1 TATATACATAATCATACAAGTT
80959756 T
1 T
80959757 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.42
Consensus pattern (22 bp):
TATATACATAATCATACAAGTT
Found at i:80959878 original size:21 final size:20
Alignment explanation
Indices: 80959850--80959888 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
80959840 TAGTATATGT
* *
80959850 TTTCTGTATGTATGTATATA
1 TTTCTGTATATATATATATA
80959870 TTTCTTGTATATATATATA
1 TTTC-TGTATATATATATA
80959889 GGTATATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTCTGTATATATATATATA
Found at i:80963894 original size:12 final size:12
Alignment explanation
Indices: 80963877--80963917 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
80963867 TTCATGATTG
*
80963877 GCATTCATTTAT
1 GCATTCATTCAT
80963889 GCATTCATTCAT
1 GCATTCATTCAT
*
80963901 TCATTCATTCATT
1 GCATTCATTCA-T
80963914 GCAT
1 GCAT
80963918 ATCCCATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.46
Consensus pattern (12 bp):
GCATTCATTCAT
Found at i:80963897 original size:4 final size:4
Alignment explanation
Indices: 80963878--80963913 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
80963868 TCATGATTGG
* *
80963878 CATT CATT TATG CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT
80963914 GCATATCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.50
Consensus pattern (4 bp):
CATT
Found at i:80968540 original size:31 final size:32
Alignment explanation
Indices: 80968502--80968566 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 32
80968492 TTCTCGGTAT
80968502 AATCAGATCAAGATAGCC-CCTGAGGATATGG
1 AATCAGATCAAGATAGCCGCCTGAGGATATGG
80968533 AATCAGATCAAGATAGCCGCCTGAGGATATGG
1 AATCAGATCAAGATAGCCGCCTGAGGATATGG
80968565 AA
1 AA
80968567 AAAACTACCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 18 0.55
32 15 0.45
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.18
Consensus pattern (32 bp):
AATCAGATCAAGATAGCCGCCTGAGGATATGG
Found at i:80972151 original size:54 final size:54
Alignment explanation
Indices: 80972063--80972171 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
80972053 TATTTTGATG
**
80972063 TTTTAATTTCTATTTTTCAAAAATCAACTTATATTGCAAGAGGTGAGTTAAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACACATATTGCAAGAGGTGAGTTAAGCC
* * *
80972117 TTTTAATTTCTGTTTTTCAAAAATCAACACATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACACATATTGCAAGAGGTGAGTTAAGCC
80972171 T
1 T
80972172 CGAGACATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (54 bp):
TTTTAATTTCTATTTTTCAAAAATCAACACATATTGCAAGAGGTGAGTTAAGCC
Found at i:80972756 original size:166 final size:159
Alignment explanation
Indices: 80972376--80972814 Score: 409
Period size: 161 Copynumber: 2.7 Consensus size: 159
80972366 TATATTTTTT
* * * * *** ** *
80972376 TCAAAAATCAACTCATATTG-AGAGAGGTGAGTTGAGCCCTGGGTCACATGCCAAGGTATTTTCA
1 TCAAAAATCAACTCATATTGCA-AGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCCACTTTCA
* * * * * *
80972440 AATTCTGTTTTTAATTTCTACTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCA
65 ATTTCTATTTTTAATGTCTA-TT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
* *
80972505 GGACACGCTGAGGTATTTTAAATTTCTGTTTG
128 GGACACACTGAGGTATTTTAAATTGCTGTTTG
* *
80972537 TCAAAAATCAACTCATATTGCAAGCGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCCACTTTCAA
1 TCAAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCCACTTTCAA
* * * * *
80972602 TTTCTGTTTTTAATGTCTGTTTT-TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGT
66 TTTCTATTTTTAATGTCTATTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGA
80972666 CACACATCGAGGTATTTTCAAAATCTGCT-TTTAAG
131 CACAC-T-GAGGTATTTT--AAAT-TGCTGTTT--G
* * * * * *
80972701 TTTC-AAAAGCTAACTCATATTGCGAGAGGTGAGTTAAGCTTTGGCTCATGTGTTGAGCTATTTT
1 --TCAAAAATC-AACTCATATTGCAAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCCACTTT
* * * *
80972765 TAATTTCTATTTTTACTTTCTATTTTAAAGAATCAATTCATATTGCGAGA
63 CAATTTCTATTTTTAATGTCTATTTTAAA-AATCAACTCATATTGCGAGA
80972815 AATGGGTTGA
Statistics
Matches: 229, Mismatches: 36, Indels: 19
0.81 0.13 0.07
Matches are distributed among these distances:
158 40 0.17
159 2 0.01
160 12 0.05
161 69 0.30
162 8 0.03
163 3 0.01
164 1 0.00
165 5 0.02
166 69 0.30
167 1 0.00
168 19 0.08
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (159 bp):
TCAAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCCACTTTCAA
TTTCTATTTTTAATGTCTATTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGA
CACACTGAGGTATTTTAAATTGCTGTTTG
Found at i:80972776 original size:13 final size:13
Alignment explanation
Indices: 80972758--80972790 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
80972748 ATGTGTTGAG
80972758 CTATTTTTAATTT
1 CTATTTTTAATTT
*
80972771 CTATTTTTACTTT
1 CTATTTTTAATTT
80972784 CTATTTT
1 CTATTTT
80972791 AAAGAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (13 bp):
CTATTTTTAATTT
Found at i:80972779 original size:81 final size:81
Alignment explanation
Indices: 80972540--80972779 Score: 221
Period size: 85 Copynumber: 2.9 Consensus size: 81
80972530 CTGTTTGTCA
* * * * * *
80972540 AAAATCAACTCATATTGCAAGCGGTGAGTTGAGCCTTGGCTCACGTGTTGAGCCACTTTCAATTT
1 AAAAGCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATTT
*
80972605 CTGTTTTTAATGTCTGTTTT
66 CTGTTTTTAA----TGTTTC
* * * * *** * * **
80972625 TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGTCACACATCGAGGTATTTTCAAAAT
1 AAAAGCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATTT
*
80972690 CTGCTTTTAA-GTTTC
66 CTGTTTTTAATGTTTC
* * *
80972705 AAAAGCTAACTCATATTGCGAGAGGTGAGTTAAGCTTTGGCTCATGTGTTGAGCTATTTTTAATT
1 AAAAGC-AACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATT
*
80972770 TCTATTTTTA
65 TCTGTTTTTA
80972780 CTTTCTATTT
Statistics
Matches: 121, Mismatches: 33, Indels: 6
0.76 0.21 0.04
Matches are distributed among these distances:
80 8 0.07
81 54 0.45
85 59 0.49
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (81 bp):
AAAAGCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGTGTTGAGCTATTTTCAATTT
CTGTTTTTAATGTTTC
Found at i:80974944 original size:21 final size:22
Alignment explanation
Indices: 80974900--80974944 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
80974890 AGTATAAATA
*
80974900 TATATACATAAATCATATAAGTT
1 TATATACAT-AATCATACAAGTT
*
80974923 TATATACAT-ATCATACATGTT
1 TATATACATAATCATACAAGTT
80974944 T
1 T
80974945 CCTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.42
Consensus pattern (22 bp):
TATATACATAATCATACAAGTT
Found at i:80975172 original size:24 final size:23
Alignment explanation
Indices: 80975118--80975176 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
80975108 TTCTCAATGT
* *
80975118 GTATATACTATGTAAATGTTTTA
1 GTATATAATATATAAATGTTTTA
*
80975141 GTACTATAATATATATATGTTTTTA
1 GTA-TATAATATATAAATG-TTTTA
*
80975166 TTATAT-ATATA
1 GTATATAATATA
80975177 CATTACGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
23 8 0.27
24 15 0.50
25 7 0.23
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51
Consensus pattern (23 bp):
GTATATAATATATAAATGTTTTA
Found at i:80978912 original size:31 final size:29
Alignment explanation
Indices: 80978841--80978913 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 29
80978831 ATAAATATCA
*
80978841 AAATTATATAC-TAATTTTGGTTTAATGT
1 AAATTATATACATAATTTTGATTTAATGT
80978869 ATAATT-TGATACATAAATTTTGATTTAATGT
1 A-AATTAT-ATACAT-AATTTTGATTTAATGT
80978900 AAATATATATACAT
1 AAAT-TATATACAT
80978914 GAAACTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
28 2 0.05
29 8 0.21
30 4 0.11
31 23 0.61
32 1 0.03
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (29 bp):
AAATTATATACATAATTTTGATTTAATGT
Found at i:80981962 original size:69 final size:67
Alignment explanation
Indices: 80981844--80981970 Score: 211
Period size: 69 Copynumber: 1.9 Consensus size: 67
80981834 TTACCCTATC
*
80981844 TTCTACCCCTAATATTATATCAAAAAAATAAAGTAGAGATTATATTCATGAATCATATTACCTCG
1 TTCTACCCCTAATATTATATCAAAAAAATAAAGTAGAGATCATATTCATGAATCATATTACCTCG
80981909 TT
66 TT
80981911 TTCTACCCCTAATA-TATATCGTAAAAAAAATAAAGTAGAGATCATATTCATGAATCATAT
1 TTCTACCCCTAATATTATATC---AAAAAAATAAAGTAGAGATCATATTCATGAATCATAT
80981971 ATTTGGAATT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
66 6 0.11
67 14 0.25
69 36 0.64
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.34
Consensus pattern (67 bp):
TTCTACCCCTAATATTATATCAAAAAAATAAAGTAGAGATCATATTCATGAATCATATTACCTCG
TT
Found at i:80991068 original size:60 final size:59
Alignment explanation
Indices: 80990933--80991069 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 59
80990923 ATATTATGGA
*
80990933 CTAATTTGGACAAAAAAAAAGCTTAAGCCCCAATATAGTAACAATTGCCAAGTTTAGGGC
1 CTAACTTGGACAAAAAAAAA-CTTAAGCCCCAATATAGTAACAATTGCCAAGTTTAGGGC
* *
80990993 CTAACTTGGAC-AAAAAAAA-TTCGAGCCCCAATGTGAG-AACAATTGTCC-AGTTTAGGGC
1 CTAACTTGGACAAAAAAAAACTT-AAGCCCCAATAT-AGTAACAATTG-CCAAGTTTAGGGC
*
80991051 CTAACTTGGACAGAAAAAA
1 CTAACTTGGACAAAAAAAA
80991070 GTTCAGATCC
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
57 2 0.03
58 39 0.57
59 18 0.26
60 10 0.14
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (59 bp):
CTAACTTGGACAAAAAAAAACTTAAGCCCCAATATAGTAACAATTGCCAAGTTTAGGGC
Found at i:80992220 original size:32 final size:34
Alignment explanation
Indices: 80992152--80992216 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 34
80992142 TGGTTTCCGA
* *
80992152 AAAAAATATCTATTTTTATTTTTTATTTTCATTT
1 AAAAAATATCTATTTTCATTTTCTATTTTCATTT
80992186 AAAAAA-AT-TATTTTCATTTTCTATTTT-ATTT
1 AAAAAATATCTATTTTCATTTTCTATTTTCATTT
80992217 TAAATATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 4 0.14
32 17 0.59
33 2 0.07
34 6 0.21
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (34 bp):
AAAAAATATCTATTTTCATTTTCTATTTTCATTT
Found at i:80993122 original size:26 final size:26
Alignment explanation
Indices: 80993093--80993200 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80993083 TGGTACAAAT
80993093 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
80993119 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80993145 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80993171 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80993197 TGAT
1 TGAT
80993201 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80996400 original size:17 final size:17
Alignment explanation
Indices: 80996378--80996411 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
80996368 GATTACATGT
80996378 TGTATA-TATAATAGAAG
1 TGTATATTAT-ATAGAAG
80996395 TGTATATTATATAGAAG
1 TGTATATTATATAGAAG
80996412 AAGAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (17 bp):
TGTATATTATATAGAAG
Found at i:80997377 original size:29 final size:30
Alignment explanation
Indices: 80997335--80997392 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
80997325 TTAAATTTAT
* *
80997335 TTAATTCTTTTTAATAATATAAAGATTAAA
1 TTAATTCTATTTAATAATAAAAAGATTAAA
80997365 TTAA-TCTATTTAATAATAAAAAGATTAA
1 TTAATTCTATTTAATAATAAAAAGATTAA
80997393 TTTGATTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (30 bp):
TTAATTCTATTTAATAATAAAAAGATTAAA
Found at i:80998450 original size:22 final size:22
Alignment explanation
Indices: 80998422--80998466 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
80998412 TAAAGCAAAG
*
80998422 CATTCAACTTCATAGAAAATTC
1 CATTCAACTTCATACAAAATTC
* *
80998444 CATTCAATTTCATACAAGATTC
1 CATTCAACTTCATACAAAATTC
80998466 C
1 C
80998467 TAACCCTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (22 bp):
CATTCAACTTCATACAAAATTC
Found at i:80999465 original size:19 final size:19
Alignment explanation
Indices: 80999443--80999482 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80999433 GAAATTATTT
80999443 TAAACTTCACAAATAAAGA
1 TAAACTTCACAAATAAAGA
80999462 TAAACTTCACAAATAAAGA
1 TAAACTTCACAAATAAAGA
80999481 TA
1 TA
80999483 GGGATTGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.57, C:0.15, G:0.05, T:0.23
Consensus pattern (19 bp):
TAAACTTCACAAATAAAGA
Found at i:81001202 original size:36 final size:35
Alignment explanation
Indices: 81001152--81001226 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 35
81001142 AGAATCAGTT
* * * *
81001152 GTTTTTGTTGTTGTTTCGCTATTATATTGTTATTA
1 GTTTTTGTTATTGTTTAGATATTATATAGTTATTA
81001187 GTTTGTTGTTATTGTTTAGATATTATATAGTTATTA
1 GTTT-TTGTTATTGTTTAGATATTATATAGTTATTA
81001223 -TTTT
1 GTTTT
81001227 ATTATTAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 1 0.03
35 7 0.20
36 27 0.77
ACGTcount: A:0.19, C:0.03, G:0.16, T:0.63
Consensus pattern (35 bp):
GTTTTTGTTATTGTTTAGATATTATATAGTTATTA
Found at i:81002591 original size:3 final size:3
Alignment explanation
Indices: 81002583--81002609 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
81002573 ATTACAGTTA
81002583 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
81002610 CTGAGTAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:81010437 original size:24 final size:24
Alignment explanation
Indices: 81010387--81010437 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
81010377 TTAATTGGTA
**
81010387 TTTTCCATTGATTTATGGTTTTTT
1 TTTTCCATTGATTTATGGTTTGAT
* *
81010411 TTTTCGATTGCTTTATGGTTTGAT
1 TTTTCCATTGATTTATGGTTTGAT
81010435 TTT
1 TTT
81010438 GAGGAATCGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.08, G:0.16, T:0.65
Consensus pattern (24 bp):
TTTTCCATTGATTTATGGTTTGAT
Found at i:81027824 original size:378 final size:377
Alignment explanation
Indices: 81027124--81027846 Score: 963
Period size: 378 Copynumber: 1.9 Consensus size: 377
81027114 CATCATCTTC
* * *
81027124 ACAAAGCTTCTCCAAATGATGACTCGTTTCAATTTGTCCATTAAAGTGTTGACTTTTTTCTCGAA
1 ACAAAGCTTCTCCAAATGAAGACTCGGTTCAATTTGTCCATTAAAGTGTTGACTTTCTTCTCGAA
*
81027189 CTTCATTAATCGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACAA
66 CCTCATTAATCGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACAA
* *
81027254 GCTCTATCCTGGCCTTTCTCTTCAACACTTTGTCTTTCAACTTCACACCGAGTTTCAGATTCTGC
131 GCTCTATCCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACACCGAGTTTCAGATTC-GC
* ** ** * ** * *
81027319 AGCTTGACCACTGTTTACCCCGTTGCAGCCATCAAAAGCCTTGACTTCACTCCACTTCCCTTGGA
195 AGCTCGACCACCATTTACCCCACTCCAGCCATCAAAAGCCTCAACTTCACTCCACTTCCCTCGAA
* * * * * * *
81027384 CTAAAGTTTGATCTTCCTTCTCAACACTATTTGAAACGTTCAACCTATGACTCATTTCCTCCTCA
260 CCAAAGCTCGATCTTCCTTCTCAACACAATTTGAAACGTTCAACCCAAGACTCATCTCCTCCTCA
81027449 TT-CTGCAAATCACCATCATCTTCATTATTAACGCATACCATCTTTCCATTCCT
325 TTCCTG-AAATCACCATCATCTTCATTATTAACGCATACCATCTTTCCATTCCT
* *
81027502 ACAAAGCTTCTCCAAATGAAGACTCGGTTCGATTTGTTCATTAAAGTGTTGACTTTCTTCTCGAA
1 ACAAAGCTTCTCCAAATGAAGACTCGGTTCAATTTGTCCATTAAAGTGTTGACTTTCTTCTCGAA
*
81027567 CCTCATTAA-CGGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTTCATCACA
66 CCTCATTAATC-GATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACA
* * * *
81027631 GGCTAC-ATTCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACATCG-TTTCTCAGATTC
130 AGCT-CTATCCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACACCGAGTT-TCAGATTC
* * * * *
81027694 -CAGAACTCGATCACCATTTACTCCACTCCATCCATTGAAAA-CCTCAACTTCACTCCCCTTCCC
193 GCAG--CTCGACCACCATTTACCCCACTCCAGCCA-TCAAAAGCCTCAACTTCACTCCACTTCCC
* * * * *
81027757 TCGAACCAAGGCTCGATCTTCCTTCTCATCACAATTTGAAACTTTCATCCCAAGACTCGTCTCCT
255 TCGAACCAAAGCTCGATCTTCCTTCTCAACACAATTTGAAACGTTCAACCCAAGACTCATCTCCT
*
81027822 CCTCGTTCCTGAAATCACCATCATC
320 CCTCATTCCTGAAATCACCATCATC
81027847 CATACAAACC
Statistics
Matches: 297, Mismatches: 41, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
376 3 0.01
377 3 0.01
378 282 0.95
379 9 0.03
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (377 bp):
ACAAAGCTTCTCCAAATGAAGACTCGGTTCAATTTGTCCATTAAAGTGTTGACTTTCTTCTCGAA
CCTCATTAATCGATTCCCTTCTGCCTTCCATTTGTTCTTCAAACCCTTCCGTTCTTCCATCACAA
GCTCTATCCTGGCCATTCACTTCAACACTTTGTCTTTCAACTTCACACCGAGTTTCAGATTCGCA
GCTCGACCACCATTTACCCCACTCCAGCCATCAAAAGCCTCAACTTCACTCCACTTCCCTCGAAC
CAAAGCTCGATCTTCCTTCTCAACACAATTTGAAACGTTCAACCCAAGACTCATCTCCTCCTCAT
TCCTGAAATCACCATCATCTTCATTATTAACGCATACCATCTTTCCATTCCT
Found at i:81029276 original size:19 final size:20
Alignment explanation
Indices: 81029252--81029290 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
81029242 TTTTGTTACG
81029252 ATAAATCTAAAAT-TTTAAC
1 ATAAATCTAAAATATTTAAC
*
81029271 ATAAATCTCAAATATTTAAC
1 ATAAATCTAAAATATTTAAC
81029291 GTATATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAAATCTAAAATATTTAAC
Found at i:81034063 original size:23 final size:23
Alignment explanation
Indices: 81034030--81034081 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 23
81034020 ATTTTAACTT
81034030 TTTATATGTAAAGAATATTTTATA
1 TTTA-ATGTAAAGAATATTTTATA
81034054 TTTAATGTAAAGAATATTTTATA
1 TTTAATGTAAAGAATATTTTATA
81034077 TTTAA
1 TTTAA
81034082 ATTAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 24 0.86
24 4 0.14
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (23 bp):
TTTAATGTAAAGAATATTTTATA
Found at i:81036750 original size:28 final size:28
Alignment explanation
Indices: 81036718--81036779 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
81036708 GTCAACTTTC
* *
81036718 AAATTTTAATATTATTTAATATTTATGT
1 AAATTATAATATTAATTAATATTTATGT
*
81036746 AAATTATAATATTAATTAATATTTCTGT
1 AAATTATAATATTAATTAATATTTATGT
81036774 AAATTA
1 AAATTA
81036780 AATTTACTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
AAATTATAATATTAATTAATATTTATGT
Found at i:81037415 original size:26 final size:27
Alignment explanation
Indices: 81037359--81037409 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
81037349 TAAAAAATAC
* * *
81037359 ATTTAAAATTTAATTTAAAAAATGAGA
1 ATTTAAAATATAATTGAAAAAAGGAGA
81037386 ATTT-AAATATAATTGAAAAAAGGA
1 ATTTAAAATATAATTGAAAAAAGGA
81037410 ATATTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (27 bp):
ATTTAAAATATAATTGAAAAAAGGAGA
Found at i:81039142 original size:36 final size:36
Alignment explanation
Indices: 81039102--81039191 Score: 126
Period size: 36 Copynumber: 2.5 Consensus size: 36
81039092 TGAAAACTTT
**
81039102 GGACAGTTTGTTCCAGTCAGCAGTGCTGAGAGCTTC
1 GGACAGTTTGTTCCAGTCAGCAGTGCCAAGAGCTTC
* *
81039138 GGACAGTTTGTTCCAGTCAGCGGTGCCAATAGCTTC
1 GGACAGTTTGTTCCAGTCAGCAGTGCCAAGAGCTTC
* *
81039174 GGATAGTTTGCTCCAGTC
1 GGACAGTTTGTTCCAGTC
81039192 CGAGGGGTCG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (36 bp):
GGACAGTTTGTTCCAGTCAGCAGTGCCAAGAGCTTC
Found at i:81040404 original size:75 final size:76
Alignment explanation
Indices: 81040280--81040430 Score: 295
Period size: 75 Copynumber: 2.0 Consensus size: 76
81040270 TCCTATTCAC
81040280 ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
1 ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
81040345 GAAACAAAATA
66 GAAACAAAATA
81040356 ACCAAGGAATAGATAAAAAAAAT-AATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
1 ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
81040420 GAAACAAAATA
66 GAAACAAAATA
81040431 GCTTATAGCT
Statistics
Matches: 75, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
75 52 0.69
76 23 0.31
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24
Consensus pattern (76 bp):
ACCAAGGAATAGATAAAAAAAATAAATCAGTAGGAAGCTTTTTCTACTTCTTAAAAGCGCTTCGA
GAAACAAAATA
Found at i:81044299 original size:20 final size:20
Alignment explanation
Indices: 81044266--81044307 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81044256 TTTTTTTATT
81044266 ATTTTTTAAGAATTTTAATAC
1 ATTTTTTAAGAATTTTAA-AC
*
81044287 ATTTTTTTA-AATTTTAAAC
1 ATTTTTTAAGAATTTTAAAC
81044306 AT
1 AT
81044308 CTTAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTTTTTAAGAATTTTAAAC
Found at i:81047797 original size:69 final size:69
Alignment explanation
Indices: 81047686--81047820 Score: 270
Period size: 69 Copynumber: 2.0 Consensus size: 69
81047676 ATAACACACA
81047686 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
1 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
81047751 TACC
66 TACC
81047755 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
1 TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
81047820 T
66 T
81047821 CGTAGATTAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.30, C:0.06, G:0.25, T:0.39
Consensus pattern (69 bp):
TTAGATTCAAGTCAATTTGATGGTCAATGTTAGAAATTAGGGAAGAAAGTTGTTTGGATTTTGGT
TACC
Found at i:81051343 original size:4 final size:4
Alignment explanation
Indices: 81051334--81051371 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
81051324 TATATCACTA
81051334 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
81051372 TTTTAACATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:81054203 original size:16 final size:16
Alignment explanation
Indices: 81054182--81054218 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
81054172 TTTTAAACAC
81054182 ATTTAAAGAACAAATA
1 ATTTAAAGAACAAATA
*
81054198 ATTTAAAGAATAAATA
1 ATTTAAAGAACAAATA
81054214 ATTTA
1 ATTTA
81054219 CTTTCCCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (16 bp):
ATTTAAAGAACAAATA
Found at i:81054295 original size:26 final size:26
Alignment explanation
Indices: 81054245--81054300 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
81054235 GTGGGTTTTG
* ***
81054245 AAAGTGAAATGATTTTTTTTTAAAAA
1 AAAGTGAAATGACTTTTTGAAAAAAA
81054271 AAAGTGAAATGACTTTTTGAAAAAAA
1 AAAGTGAAATGACTTTTTGAAAAAAA
81054297 AAAG
1 AAAG
81054301 GAAGTGAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.32
Consensus pattern (26 bp):
AAAGTGAAATGACTTTTTGAAAAAAA
Found at i:81054475 original size:36 final size:37
Alignment explanation
Indices: 81054435--81054513 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 37
81054425 ATTAATAATA
*
81054435 TAATATAATTTTAAATTTAATATAAATAT-ATAT-GAT
1 TAATATAA-TTAAAATTTAATATAAATATAATATAGAT
*
81054471 TAATAT-ATTAAAATTTTATATAAATATAATATAGAT
1 TAATATAATTAAAATTTAATATAAATATAATATAGAT
*
81054507 TACTATA
1 TAATATA
81054514 GAAAAGCTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
34 18 0.49
35 5 0.14
36 14 0.38
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.46
Consensus pattern (37 bp):
TAATATAATTAAAATTTAATATAAATATAATATAGAT
Found at i:81054492 original size:34 final size:36
Alignment explanation
Indices: 81054447--81054513 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 36
81054437 ATATAATTTT
81054447 AAATTTAATATAAATAT-ATAT-GATTAATATATTA
1 AAATTTAATATAAATATAATATAGATTAATATATTA
* *
81054481 AAATTTTATATAAATATAATATAGATTACTATA
1 AAATTTAATATAAATATAATATAGATTAATATA
81054514 GAAAAGCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 16 0.55
35 4 0.14
36 9 0.31
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (36 bp):
AAATTTAATATAAATATAATATAGATTAATATATTA
Found at i:81054863 original size:9 final size:9
Alignment explanation
Indices: 81054849--81054902 Score: 69
Period size: 9 Copynumber: 6.2 Consensus size: 9
81054839 TTTTTAATTT
81054849 TTAAAAAT-
1 TTAAAAATA
81054857 TTAAAAATA
1 TTAAAAATA
81054866 TTAAAAATA
1 TTAAAAATA
81054875 TTAAAAATA
1 TTAAAAATA
81054884 -T-AAAATA
1 TTAAAAATA
*
81054891 TAAAAAAATA
1 T-TAAAAATA
81054901 TT
1 TT
81054903 TTTTAATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 6 0.15
8 9 0.22
9 18 0.45
10 7 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTAAAAATA
Found at i:81054872 original size:18 final size:17
Alignment explanation
Indices: 81054849--81054902 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
81054839 TTTTTAATTT
81054849 TTAAAAATTTAAAAATA
1 TTAAAAATTTAAAAATA
81054866 TTAAAAATATTAAAAATA
1 TTAAAAAT-TTAAAAATA
**
81054884 -TAAAATATAAAAAAATA
1 TTAAAA-ATTTAAAAATA
81054901 TT
1 TT
81054903 TTTTAATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 20 0.62
18 12 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAAAAATTTAAAAATA
Found at i:81054878 original size:26 final size:26
Alignment explanation
Indices: 81054849--81054902 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
81054839 TTTTTAATTT
* *
81054849 TTAAAAATTTAAAA-ATATTAAAAATA
1 TTAAAAATATAAAATATA-AAAAAATA
81054875 TTAAAAATATAAAATATAAAAAAATA
1 TTAAAAATATAAAATATAAAAAAATA
81054901 TT
1 TT
81054903 TTTTAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (26 bp):
TTAAAAATATAAAATATAAAAAAATA
Found at i:81056756 original size:31 final size:31
Alignment explanation
Indices: 81056691--81056757 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
81056681 TAACAACTCA
*
81056691 TCAATGACTTAAATAAAAACTATGGAACAAT
1 TCAATGACTTAAATAAAAACTATCGAACAAT
* * * *
81056722 TCAATGACTTAAATGAAAACTTTCGAATAGT
1 TCAATGACTTAAATAAAAACTATCGAACAAT
81056753 TCAAT
1 TCAAT
81056758 AACCATTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.30
Consensus pattern (31 bp):
TCAATGACTTAAATAAAAACTATCGAACAAT
Found at i:81060719 original size:4 final size:4
Alignment explanation
Indices: 81060712--81060750 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
81060702 CCATTTTACT
* *
81060712 TACA TACA TACA T-TA TACA TACA TTCA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
81060751 CACACACATG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 2 0.07
4 28 0.93
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (4 bp):
TACA
Found at i:81060731 original size:11 final size:12
Alignment explanation
Indices: 81060714--81060747 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
81060704 ATTTTACTTA
81060714 CATACATACATT
1 CATACATACATT
81060726 -ATACATACATT
1 CATACATACATT
81060737 CATACATACAT
1 CATACATACAT
81060748 ACACACACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (12 bp):
CATACATACATT
Found at i:81061413 original size:8 final size:8
Alignment explanation
Indices: 81061400--81061426 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
81061390 ATGACCCGCG
81061400 TGAAAAGA
1 TGAAAAGA
81061408 TGAAAAGA
1 TGAAAAGA
81061416 TGAAAAGA
1 TGAAAAGA
81061424 TGA
1 TGA
81061427 GATACATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (8 bp):
TGAAAAGA
Found at i:81064207 original size:132 final size:131
Alignment explanation
Indices: 81063964--81064231 Score: 441
Period size: 132 Copynumber: 2.0 Consensus size: 131
81063954 TCAGATCATA
* *
81063964 GTTTCTGCTTTTGATCTTATAACTATATGTTAAATGAAGCTTTCGATGGTTTATTTTATCGTAGT
1 GTTTCTGCTTTTGATCTTATAACTATATGTTAAATAAAGCTTTCAATGGTTTATTTTATCGTAGT
*
81064029 TTTATATTTCTATATTTTCATGATTCTACAAATGTTTATTAATGGAAGCCGACCAGTATAATTTA
66 ATTATATTTC-ATATTTTCATGATTCTACAAATGTTTATTAATGGAAGCCGACCAGTATAATTTA
81064094 CT
130 CT
*
81064096 GTTTCTGCTTTTGATTTTAATAACTATATGTTAAATAAAGCTTTCAATGGTTTATTTTATCGTGT
1 GTTTCTGCTTTTGATCTT-ATAACTATATGTTAAATAAAGCTTTCAATGGTTTATTTTATC--GT
*
81064161 AGTATTATATTTC-TA-TTTCATGATTCTACAAATGTTTATTAATGGAAGCTGACCAGTATAATT
63 AGTATTATATTTCATATTTTCATGATTCTACAAATGTTTATTAATGGAAGCCGACCAGTATAATT
81064224 TACT
128 TACT
81064228 GTTT
1 GTTT
81064232 TAATACTCTT
Statistics
Matches: 128, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
132 72 0.56
133 42 0.33
135 14 0.11
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.47
Consensus pattern (131 bp):
GTTTCTGCTTTTGATCTTATAACTATATGTTAAATAAAGCTTTCAATGGTTTATTTTATCGTAGT
ATTATATTTCATATTTTCATGATTCTACAAATGTTTATTAATGGAAGCCGACCAGTATAATTTAC
T
Found at i:81070543 original size:19 final size:17
Alignment explanation
Indices: 81070512--81070547 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
81070502 TATCATTCAC
81070512 TTTTTTTTTTAATTTTA
1 TTTTTTTTTTAATTTTA
81070529 TTTTTTGTTTGTAATTTTA
1 TTTTTT-TTT-TAATTTTA
81070548 AAAGTTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.78
Consensus pattern (17 bp):
TTTTTTTTTTAATTTTA
Found at i:81075331 original size:3 final size:3
Alignment explanation
Indices: 81075323--81075348 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
81075313 TTATGCATTT
81075323 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
81075349 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:81079072 original size:43 final size:43
Alignment explanation
Indices: 81079019--81079102 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
81079009 ACCTAACTTG
*
81079019 AAATTAAATACATCCCAACATATCTCAACCCCCACCAAACTCA
1 AAATGAAATACATCCCAACATATCTCAACCCCCACCAAACTCA
* *
81079062 AAATGAAATACATCCCAACATATTTCAACCCCCACCTAACT
1 AAATGAAATACATCCCAACATATCTCAACCCCCACCAAACT
81079103 TAATATACCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.43, C:0.36, G:0.01, T:0.20
Consensus pattern (43 bp):
AAATGAAATACATCCCAACATATCTCAACCCCCACCAAACTCA
Found at i:81079581 original size:16 final size:16
Alignment explanation
Indices: 81079557--81079614 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
81079547 ATAATAATTA
81079557 ATTTT-TAATTTACTC
1 ATTTTATAATTTACTC
*
81079572 ATTTTATAA--TA-TA
1 ATTTTATAATTTACTC
81079585 ATTTATAATTAATTTACTC
1 ATTT-T-A-TAATTTACTC
81079604 ATTTTATAATT
1 ATTTTATAATT
81079615 ATTTTTCATG
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
13 5 0.15
14 3 0.09
15 6 0.18
16 11 0.32
17 1 0.03
18 3 0.09
19 5 0.15
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTTATAATTTACTC
Found at i:81081851 original size:21 final size:21
Alignment explanation
Indices: 81081795--81081851 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
81081785 ATCAAATTTT
*
81081795 AAATAA-AAATTTAAAATATA
1 AAATAACAATTTTAAAATATA
**
81081815 AAATATTAATTATTAAAA-ATA
1 AAATAACAATT-TTAAAATATA
81081836 AAATAACATATTTTAA
1 AAATAACA-ATTTTAA
81081852 CTGATAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 5 0.17
21 16 0.53
22 9 0.30
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATAACAATTTTAAAATATA
Found at i:81092011 original size:27 final size:27
Alignment explanation
Indices: 81091979--81092031 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
81091969 GACCAAAAAG
81091979 ACAAAATTGAATAGTTGAATGACCATA
1 ACAAAATTGAATAGTTGAATGACCATA
81092006 ACAAAATTGAATAGTTGAATGACCAT
1 ACAAAATTGAATAGTTGAATGACCAT
81092032 GTTGTAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.26
Consensus pattern (27 bp):
ACAAAATTGAATAGTTGAATGACCATA
Found at i:81092058 original size:56 final size:59
Alignment explanation
Indices: 81091989--81092111 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 59
81091979 ACAAAATTGA
* * *
81091989 ATAGTTGAATGACCATAACA-AAA-TT-GAATAGTTGAATGACCATGTTGTAAATTTTC
1 ATAGTTGAATGACCATAAAAGAAAGTTAGAATAGCTGAATGACCATGTTATAAATTTTC
* * * *
81092045 ATAGTTGAGTGACCATAAAAGAAAGTTACTAATAGCTGAATGACCATTTTATAATTTTTC
1 ATAGTTGAATGACCATAAAAGAAAGTTA-GAATAGCTGAATGACCATGTTATAAATTTTC
81092105 ATAGTTG
1 ATAGTTG
81092112 GGATGACAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 18 0.32
57 3 0.05
58 2 0.04
60 33 0.59
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (59 bp):
ATAGTTGAATGACCATAAAAGAAAGTTAGAATAGCTGAATGACCATGTTATAAATTTTC
Found at i:81095478 original size:16 final size:16
Alignment explanation
Indices: 81095457--81095487 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81095447 TTCTAAATTT
*
81095457 TCACCAACATACAATG
1 TCACCAACACACAATG
81095473 TCACCAACACACAAT
1 TCACCAACACACAAT
81095488 TGTTGCTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.35, G:0.03, T:0.16
Consensus pattern (16 bp):
TCACCAACACACAATG
Found at i:81099128 original size:23 final size:25
Alignment explanation
Indices: 81099102--81099161 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 25
81099092 TTCCTTTTTT
81099102 TTTTTTTTGCTTGA-TTTT-AATTA
1 TTTTTTTTGCTTGATTTTTGAATTA
* * *
81099125 -TTTTTTAGCTTTGATTTTTGATTTT
1 TTTTTTTTGC-TTGATTTTTGAATTA
81099150 TTTTTTTTGCTT
1 TTTTTTTTGCTT
81099162 TGGGGTTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
22 8 0.28
23 4 0.14
24 4 0.14
25 5 0.17
26 8 0.28
ACGTcount: A:0.12, C:0.05, G:0.10, T:0.73
Consensus pattern (25 bp):
TTTTTTTTGCTTGATTTTTGAATTA
Found at i:81111258 original size:20 final size:20
Alignment explanation
Indices: 81111235--81111275 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
81111225 ATTAATTTTT
81111235 TTAAAAAATTAAAATAAAAC
1 TTAAAAAATTAAAATAAAAC
81111255 TTAAAAAATTAAAATAAAAC
1 TTAAAAAATTAAAATAAAAC
81111275 T
1 T
81111276 CACTCAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (20 bp):
TTAAAAAATTAAAATAAAAC
Found at i:81111726 original size:29 final size:29
Alignment explanation
Indices: 81111679--81111734 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
81111669 TGATTTTTTT
* * *
81111679 TTTAATAATACATGTACTAAATTGATCCA
1 TTTAATAATAAAAGGACTAAATTGATCCA
*
81111708 TTTAATAATAAAAGGACTAATTTGATC
1 TTTAATAATAAAAGGACTAAATTGATC
81111735 GGGTCCTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.38
Consensus pattern (29 bp):
TTTAATAATAAAAGGACTAAATTGATCCA
Found at i:81113376 original size:141 final size:142
Alignment explanation
Indices: 81113144--81113427 Score: 482
Period size: 141 Copynumber: 2.0 Consensus size: 142
81113134 AATGCAATCT
* *
81113144 AACTCATAGCACAAAAGGCCTCCATGGCACTTTTACTGTATGGTTCTTCAAAAGGAATATATATA
1 AACTCATAGCACAAAAGGCATCCATGGCACTTTTACCGTATGGTTCTTCAAAAGGAATATATATA
*
81113209 AAAAAAATACCAATTAAAAGAATAACATAAACCATGTAATTTGAACCTATCATATTTCAACCTCG
66 AAAAAAATACCAATTAAAAGAATAACAAAAACCATGTAATTTGAACCTATCATATTTCAACCTCG
81113274 CATGAAAAAACC
131 CATGAAAAAACC
* * *
81113286 AACTCTTAGCACAAAGGGCATCCATGGCACTTTTACCGTCATGTTTCTTCAAAAGGAATATATA-
1 AACTCATAGCACAAAAGGCATCCATGGCACTTTTACCGT-ATGGTTCTTCAAAAGGAATATATAT
*
81113350 AAAAAAAA-ACCAATTAAAAGAATAACAAAAACCATGTAATTTGAACCTATCATATTTCAACCTT
65 AAAAAAAATACCAATTAAAAGAATAACAAAAACCATGTAATTTGAACCTATCATATTTCAACCTC
81113414 GCATGAAAAAACC
130 GCATGAAAAAACC
81113427 A
1 A
81113428 GTATGAAAAA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
141 68 0.51
142 43 0.32
143 23 0.17
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.26
Consensus pattern (142 bp):
AACTCATAGCACAAAAGGCATCCATGGCACTTTTACCGTATGGTTCTTCAAAAGGAATATATATA
AAAAAAATACCAATTAAAAGAATAACAAAAACCATGTAATTTGAACCTATCATATTTCAACCTCG
CATGAAAAAACC
Found at i:81113722 original size:171 final size:171
Alignment explanation
Indices: 81113532--81113970 Score: 450
Period size: 171 Copynumber: 2.6 Consensus size: 171
81113522 TGTATCTAGC
* *
81113532 TCAAAATAACAACCTAAACAAA-AGACTAACGGG-TTCTTCACATACATTCAAGAGATAATATTC
1 TCAAAATAACAACCTAAACAAATA-ACTAA-GGGCTTCTTAACATACATTCAAGAGATAAAATTC
* * * * **
81113595 ATGAAACGGGCATCACA-AAAATTGAGATTTTACACGTAAAAT-AATAGAACCACTGTCTGTTTA
64 ATAAAACGGGCATCACAGAAAA-TGACATTTTACACGT-AAATGAATAGAAACACTGTATGTCAA
81113658 TACTTTTTACAAACACATTGACTACATTGCATATCTGCACATAAT
127 TACTTTTTACAAACACATTGACTACATTGCATATCTGCACATAAT
* *
81113703 TCAAAATAACGAGCTAAACAAATAACTAAGGGCTTCTTAACATACATTCAAGAGATAAAATTCAT
1 TCAAAATAACAACCTAAACAAATAACTAAGGGCTTCTTAACATACATTCAAGAGATAAAATTCAT
* * * * ** * *
81113768 AAAATGGGTATTAGAGAAAATGACATTTTATGCGTAAATGCATAGAAACACTTTATGTCAATACT
66 AAAACGGGCATCACAGAAAATGACATTTTACACGTAAATGAATAGAAACACTGTATGTCAATACT
* *
81113833 TTTTACAAACACATTGACTACATTGCATATTTGCACCTAAT
131 TTTTACAAACACATTGACTACATTGCATATCTGCACATAAT
* * *
81113874 TC----T----A---AAACAAATAACTAATGGCTTCTTCACATACATTCACA-AGACAAAATTCA
1 TCAAAATAACAACCTAAACAAATAACTAAGGGCTTCTTAACATACATTCA-AGAGATAAAATTCA
* *
81113927 TGAAACGGGTAT-A-AGAAAA--ACTGATTTTACACGTAAATGAATAG
65 TAAAACGGGCATCACAGAAAATGAC--ATTTTACACGTAAATGAATAG
81113971 TATCAATCGG
Statistics
Matches: 233, Mismatches: 28, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
156 2 0.01
158 24 0.10
159 1 0.00
160 54 0.23
161 1 0.00
163 1 0.00
167 1 0.00
170 7 0.03
171 137 0.59
172 5 0.02
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (171 bp):
TCAAAATAACAACCTAAACAAATAACTAAGGGCTTCTTAACATACATTCAAGAGATAAAATTCAT
AAAACGGGCATCACAGAAAATGACATTTTACACGTAAATGAATAGAAACACTGTATGTCAATACT
TTTTACAAACACATTGACTACATTGCATATCTGCACATAAT
Found at i:81114496 original size:72 final size:71
Alignment explanation
Indices: 81114412--81114556 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 71
81114402 ATGTGATCCG
*
81114412 AATTAAAATTTTAATAATAATTCACTTTAATTACAAAATATTTTTGGAATTTTATTTTTTTTAGA
1 AATTAAAATTTTAATAATAATTCACTTTAATTAAAAAATATTTTTGGAATTTTA-TTTTTTTAGA
81114477 ATAATAA
65 ATAATAA
81114484 AATTAAAATTTTAATAATAATTCACTTTAATTAAAAAATATTTTTGGAATTTTATTTTTTTAGAA
1 AATTAAAATTTTAATAATAATTCACTTTAATTAAAAAATATTTTTGGAATTTTATTTTTTTAGAA
81114549 TAATAA
66 TAATAA
81114555 AA
1 AA
81114557 AAAATTATTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
71 19 0.26
72 53 0.74
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (71 bp):
AATTAAAATTTTAATAATAATTCACTTTAATTAAAAAATATTTTTGGAATTTTATTTTTTTAGAA
TAATAA
Found at i:81119823 original size:2 final size:2
Alignment explanation
Indices: 81119816--81119844 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81119806 CTTTAACATT
81119816 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
81119845 AGTCAATCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:81123636 original size:22 final size:21
Alignment explanation
Indices: 81123598--81123646 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
81123588 ATTTTATGCG
81123598 TTTTTTAATTTACATTTTTGGTA
1 TTTTTTAATTTACATTTTT--TA
81123621 TTTTTATAA-TTA-ATTTTTTA
1 TTTTT-TAATTTACATTTTTTA
81123641 TTTTTT
1 TTTTTT
81123647 GAAGTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 1 0.04
20 7 0.28
22 6 0.24
23 8 0.32
24 3 0.12
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTTTTAATTTACATTTTTTA
Found at i:81125007 original size:13 final size:13
Alignment explanation
Indices: 81124989--81125023 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
81124979 ATATTAGTAT
81124989 AAATAAA-TAATTA
1 AAATAAAGT-ATTA
81125002 AAATAAAGTATTA
1 AAATAAAGTATTA
81125015 AAATAAAGT
1 AAATAAAGT
81125024 TGGTGATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 20 0.95
14 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (13 bp):
AAATAAAGTATTA
Found at i:81125474 original size:31 final size:31
Alignment explanation
Indices: 81125439--81125510 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
81125429 TTTGATGAAT
81125439 TTTGACTTAAGCAACTAATTATCTGATTTAA
1 TTTGACTTAAGCAACTAATTATCTGATTTAA
*
81125470 TTTGACTTAAGTAACTAATTATCTGATTTAA
1 TTTGACTTAAGCAACTAATTATCTGATTTAA
81125501 TTTGACTTAA
1 TTTGACTTAA
81125511 TTATCCACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (31 bp):
TTTGACTTAAGCAACTAATTATCTGATTTAA
Found at i:81130708 original size:31 final size:31
Alignment explanation
Indices: 81130670--81130732 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
81130660 AATTTTTACT
81130670 GTTAAAAACTGGTCGTTGTATGTTAGCATAA
1 GTTAAAAACTGGTCGTTGTATGTTAGCATAA
*
81130701 GTTAAAAACTGGTCTTTGTATGTTAGCATAA
1 GTTAAAAACTGGTCGTTGTATGTTAGCATAA
81130732 G
1 G
81130733 GTACACATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTAAAAACTGGTCGTTGTATGTTAGCATAA
Found at i:81132999 original size:30 final size:29
Alignment explanation
Indices: 81132965--81133021 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
81132955 CTAAGAAATT
*
81132965 TCTATTTTAGTCTTTGTATTATTAAATGGA
1 TCTA-TTTAGTCATTGTATTATTAAATGGA
* *
81132995 TCTATTTATTCATTGTGTTATTAAATG
1 TCTATTTAGTCATTGTATTATTAAATG
81133022 TGTTATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.26, C:0.07, G:0.12, T:0.54
Consensus pattern (29 bp):
TCTATTTAGTCATTGTATTATTAAATGGA
Found at i:81133023 original size:12 final size:12
Alignment explanation
Indices: 81133008--81133032 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81132998 ATTTATTCAT
81133008 TGTGTTATTAAA
1 TGTGTTATTAAA
81133020 TGTGTTATTAAA
1 TGTGTTATTAAA
81133032 T
1 T
81133033 AAATTAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TGTGTTATTAAA
Found at i:81138363 original size:30 final size:30
Alignment explanation
Indices: 81138329--81138393 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
81138319 ATTTGGACTT
** *
81138329 ATTGATTCTTTTTAATAGTACAGGGACTAA
1 ATTGATTCCATTTAATAATACAGGGACTAA
*
81138359 ATTGA-TCCATTTAATAATAGAGGGACTAA
1 ATTGATTCCATTTAATAATACAGGGACTAA
*
81138388 TTTGAT
1 ATTGAT
81138394 CCAGTCACTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (30 bp):
ATTGATTCCATTTAATAATACAGGGACTAA
Found at i:81138371 original size:29 final size:29
Alignment explanation
Indices: 81138339--81138414 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
81138329 ATTGATTCTT
*
81138339 TTTAATAGTACAGGGACTAAATTGATCCA
1 TTTAATAATACAGGGACTAAATTGATCCA
* *
81138368 TTTAATAATAGAGGGACTAATTTGATCCA
1 TTTAATAATACAGGGACTAAATTGATCCA
* *
81138397 GTCACTATAATACAGGGA
1 TTTA--ATAATACAGGGA
81138415 TCTCCCAGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 28 0.72
31 11 0.28
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (29 bp):
TTTAATAATACAGGGACTAAATTGATCCA
Found at i:81138682 original size:54 final size:54
Alignment explanation
Indices: 81138618--81138725 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
81138608 TAGACTCGAA
81138618 GTTTATGTTTTAGCTGATTCTAAATCCTGAGTATGACACGGGAAAAATTATACT
1 GTTTATGTTTTAGCTGATTCTAAATCCTGAGTATGACACGGGAAAAATTATACT
81138672 GTTTATGTTTTAGCTGATTCTAAATCCTGAGTATGACACGGGAAAAATTATACT
1 GTTTATGTTTTAGCTGATTCTAAATCCTGAGTATGACACGGGAAAAATTATACT
81138726 CCAATGGGCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (54 bp):
GTTTATGTTTTAGCTGATTCTAAATCCTGAGTATGACACGGGAAAAATTATACT
Found at i:81145776 original size:37 final size:37
Alignment explanation
Indices: 81145726--81145800 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
81145716 CATTTTATGG
81145726 TTCATGATTACCTTCCTAACAACATCGTCTTCAAATT
1 TTCATGATTACCTTCCTAACAACATCGTCTTCAAATT
81145763 TTCATGATTACCTTCCTAACAACATCGTCTTCAAATT
1 TTCATGATTACCTTCCTAACAACATCGTCTTCAAATT
81145800 T
1 T
81145801 AATTAACCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.27, G:0.05, T:0.39
Consensus pattern (37 bp):
TTCATGATTACCTTCCTAACAACATCGTCTTCAAATT
Found at i:81146157 original size:53 final size:53
Alignment explanation
Indices: 81146077--81146183 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
81146067 ATACACTAAA
81146077 GGAAGTGGCTCCATCACCATAATTAGAACTAAAGGTTAAGTGAGTTTTCTATT
1 GGAAGTGGCTCCATCACCATAATTAGAACTAAAGGTTAAGTGAGTTTTCTATT
81146130 GGAAGTGGCTCCATCACCATAATTAGAACTAAAGGTTAAGTGAGTTTTCTATT
1 GGAAGTGGCTCCATCACCATAATTAGAACTAAAGGTTAAGTGAGTTTTCTATT
81146183 G
1 G
81146184 ATATCGAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (53 bp):
GGAAGTGGCTCCATCACCATAATTAGAACTAAAGGTTAAGTGAGTTTTCTATT
Found at i:81152181 original size:21 final size:22
Alignment explanation
Indices: 81152157--81152199 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
81152147 TCCCGTCTCG
81152157 TGCTCG-TGTCTTATTTTTCCT
1 TGCTCGATGTCTTATTTTTCCT
81152178 TGCTCGTATGTCTTATTTTTCC
1 TGCTCG-ATGTCTTATTTTTCC
81152200 GAACTATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.30
23 14 0.70
ACGTcount: A:0.07, C:0.23, G:0.14, T:0.56
Consensus pattern (22 bp):
TGCTCGATGTCTTATTTTTCCT
Found at i:81157049 original size:20 final size:20
Alignment explanation
Indices: 81157012--81157049 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
81157002 AAGTATAAAA
*
81157012 ATAAAAATTATTAAAAAAGT
1 ATAAAAATTATAAAAAAAGT
81157032 ATAAAAATTATAAAAAAA
1 ATAAAAATTATAAAAAAA
81157050 TATTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
ATAAAAATTATAAAAAAAGT
Found at i:81157520 original size:21 final size:20
Alignment explanation
Indices: 81157479--81157517 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
81157469 TTTTTACCAC
*
81157479 TTTTTATTATTTTAAATAAT
1 TTTTTATAATTTTAAATAAT
81157499 TTTTTATAATTTTAAATAA
1 TTTTTATAATTTTAAATAA
81157518 ATTCTAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTATAATTTTAAATAAT
Found at i:81157527 original size:20 final size:20
Alignment explanation
Indices: 81157487--81157527 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81157477 ACTTTTTATT
* * *
81157487 ATTTTAAATAATTTTTTATA
1 ATTTTAAATAAATTCTAATA
81157507 ATTTTAAATAAATTCTAATA
1 ATTTTAAATAAATTCTAATA
81157527 A
1 A
81157528 ATTGAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTTAAATAAATTCTAATA
Found at i:81177006 original size:244 final size:247
Alignment explanation
Indices: 81176573--81177035 Score: 664
Period size: 244 Copynumber: 1.9 Consensus size: 247
81176563 AGATATTAAA
81176573 AAAAAGGTTAAATGACTAAAGAAGCCCTTAAACTAGTTTTTTTTTAAAAAAATAAGCTTCTAAAC
1 AAAAAGGTTAAATGACTAAAGAAGCCCTTAAACTAGTTTTTTTTT--AAAAATAAGCTTCTAAAC
* * * * * *
81176638 TTTTGTTGCAACTCAAATAAACCCTTATGTTTTGATTCGTATTTAAATTAGCTCTTGAATAATGC
64 TTTTGTTGCAACTCAAATAAACCCGTATATTTTGATTCGTATTTAAATCAGCCCTTAAATAATGA
* *
81176703 TTTATATTAAGAATTTTATTTAATTTTAAACTAAAGGATAGAGGCTTATTTAGATACAAGTT-AA
129 TTTATATTAAGAATTTTATTTAAGTATAAACTAAAGGATAGAGGCTTATTTAGATACAAGTTAAA
81176767 AGATTAAGAGCTTATTTGGTTTTTAAGGGTTTATTAGGGTTTATACAAAACATT
194 AGATTAAGAGCTTATTTGGTTTTTAAGGGTTTATTAGGGTTTATACAAAACATT
* * *
81176821 AAAAAGGTTAAATTACTACAGAAGCCCTTAAACTAG-TTTTTTTT-AAAATATGCTTCTAAACTT
1 AAAAAGGTTAAATGACTAAAGAAGCCCTTAAACTAGTTTTTTTTTAAAAATAAGCTTCTAAACTT
* * * *
81176884 TTTTTGTAACTCAAATAAACCCGTATATTTTGATTTGTTTTTAAATCAGCCCTTAAATAATGATT
66 TTGTTGCAACTCAAATAAACCCGTATATTTTGATTCGTATTTAAATCAGCCCTTAAATAATGATT
* * * * *
81176949 TATATTGAA-AATTTTATTTAGGTATAAATTGAAGTATAGATGCTTATTTAGATACAAGTTAAAA
131 TATATT-AAGAATTTTATTTAAGTATAAACTAAAGGATAGAGGCTTATTTAGATACAAGTT---A
81177013 AAAGATTAAGAGCTTATTTGGTT
192 AAAGATTAAGAGCTTATTTGGTT
81177036 ACCAATTAAA
Statistics
Matches: 190, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
244 123 0.65
245 2 0.01
247 8 0.04
248 57 0.30
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (247 bp):
AAAAAGGTTAAATGACTAAAGAAGCCCTTAAACTAGTTTTTTTTTAAAAATAAGCTTCTAAACTT
TTGTTGCAACTCAAATAAACCCGTATATTTTGATTCGTATTTAAATCAGCCCTTAAATAATGATT
TATATTAAGAATTTTATTTAAGTATAAACTAAAGGATAGAGGCTTATTTAGATACAAGTTAAAAG
ATTAAGAGCTTATTTGGTTTTTAAGGGTTTATTAGGGTTTATACAAAACATT
Found at i:81179922 original size:2 final size:2
Alignment explanation
Indices: 81179915--81180026 Score: 154
Period size: 2 Copynumber: 56.5 Consensus size: 2
81179905 CATATACATC
* * * * * *
81179915 AG AG AG AG AG AG GG AG AG GG AG AG GG AG AG GG AG AG GG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
81179957 AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
81179999 -G AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
81180027 TGTAGCTTTC
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
1 1 0.01
2 94 0.99
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (2 bp):
AG
Found at i:81189086 original size:16 final size:15
Alignment explanation
Indices: 81189061--81189090 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81189051 GAATTTTTTT
81189061 ATTTAATTAATTTAG
1 ATTTAATTAATTTAG
81189076 ATTTAAATTAATTTA
1 ATTT-AATTAATTTA
81189091 ATCATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATTTAATTAATTTAG
Done.