Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 253 of 253
Found at i:81190474 original size:18 final size:19
Alignment explanation
Indices: 81190428--81190475 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
81190418 TAAAATGTTG
81190428 ATTA-GATTAATTGGCCAAT
1 ATTATGATT-ATTGGCCAAT
* *
81190447 ATTTTGATTATTGGTCAA-
1 ATTATGATTATTGGCCAAT
81190465 ATTATGATTAT
1 ATTATGATTAT
81190476 GTTGAAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 10 0.40
19 11 0.44
20 4 0.16
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (19 bp):
ATTATGATTATTGGCCAAT
Found at i:81191432 original size:93 final size:92
Alignment explanation
Indices: 81191320--81191501 Score: 240
Period size: 93 Copynumber: 2.0 Consensus size: 92
81191310 TTCTGCCTAT
* *
81191320 GAGGTTTCCCATAAGAAATCAATTCTCCGC-TCTCGGTTTTAACTTCTAGGGAATCAAAATCTTG
1 GAGGTTTCCCATAAGAAATCAA--CTCCGCATCTCGATTTTAACTTCCAGGGAATCAAAATCTTG
*
81191384 CGCAGACTTTTCCCTAATTTTCTCCACAC
64 CGAAGACTTTTCCCTAATTTTCTCCACAC
* * * * * * *
81191413 GAGGTTTCTCATCAGAAATCAACTCCTCATTCTTGATTTTAATTTCCAGGGATTCAGAATCTTGC
1 GAGGTTTCCCATAAGAAATCAACTCCGCA-TCTCGATTTTAACTTCCAGGGAATCAAAATCTTGC
81191478 GAAGACTTTTCCCTAATTTTCTCC
65 GAAGACTTTTCCCTAATTTTCTCC
81191502 CTCTTTATTT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
91 5 0.06
93 72 0.94
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (92 bp):
GAGGTTTCCCATAAGAAATCAACTCCGCATCTCGATTTTAACTTCCAGGGAATCAAAATCTTGCG
AAGACTTTTCCCTAATTTTCTCCACAC
Found at i:81215943 original size:182 final size:182
Alignment explanation
Indices: 81215636--81216004 Score: 684
Period size: 182 Copynumber: 2.0 Consensus size: 182
81215626 ATATAAATAG
** *
81215636 GCAATTACACCTTAACTGAAGCCCTCCGTATATGTGTATGTATAAGGCTTGGCTAAGACTTAGAA
1 GCAATTACACCTTAACTGAAGCCCTCCCCATATGTGTATATATAAGGCTTGGCTAAGACTTAGAA
81215701 TGGTAGGTTTTTGTTCTATCAACAAGTCAACCTTCAGGCTTCTATATATTGCTGTTCAAAGTATA
66 TGGTAGGTTTTTGTTCTATCAACAAGTCAACCTTCAGGCTTCTATATATTGCTGTTCAAAGTATA
81215766 TTTAATAACCCCTTCCATCTCTCAACTCAACTCAACTCTATATATTGACTCA
131 TTTAATAACCCCTTCCATCTCTCAACTCAACTCAACTCTATATATTGACTCA
81215818 GCAATTACACCTTAACTGAAGCCCTCCCCATATGTGTATATATAAGGCTTGGCTAAGACTTAGAA
1 GCAATTACACCTTAACTGAAGCCCTCCCCATATGTGTATATATAAGGCTTGGCTAAGACTTAGAA
*
81215883 TGGTAGGTTTTTGTTCTATCAACAAGTCAACCTTCAGGCTTCTATATATTGTTGTTCAAAGTATA
66 TGGTAGGTTTTTGTTCTATCAACAAGTCAACCTTCAGGCTTCTATATATTGCTGTTCAAAGTATA
* *
81215948 TTTAATAACCCCTTCCATCTCTCCACTCAACTCAACTCTATATTTTGACTCA
131 TTTAATAACCCCTTCCATCTCTCAACTCAACTCAACTCTATATATTGACTCA
81216000 GCAAT
1 GCAAT
81216005 ATCAAGCATC
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
182 181 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (182 bp):
GCAATTACACCTTAACTGAAGCCCTCCCCATATGTGTATATATAAGGCTTGGCTAAGACTTAGAA
TGGTAGGTTTTTGTTCTATCAACAAGTCAACCTTCAGGCTTCTATATATTGCTGTTCAAAGTATA
TTTAATAACCCCTTCCATCTCTCAACTCAACTCAACTCTATATATTGACTCA
Found at i:81216133 original size:16 final size:16
Alignment explanation
Indices: 81216112--81216143 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81216102 CAGCAAGATC
81216112 TTTACATACATACATA
1 TTTACATACATACATA
*
81216128 TTTACATGCATACATA
1 TTTACATACATACATA
81216144 CATAAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (16 bp):
TTTACATACATACATA
Found at i:81217910 original size:6 final size:6
Alignment explanation
Indices: 81217899--81217964 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
81217889 TTGAACTTAT
81217899 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
81217947 TACATA TACATA TACATA
1 TACATA TACATA TACATA
81217965 GAGAGAGAGA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
TACATA
Found at i:81221532 original size:27 final size:28
Alignment explanation
Indices: 81221502--81221557 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
81221492 AAAAAACATA
81221502 AAATT-ATTTATTACATATAAT-TAATTT
1 AAATTAATTT-TTACATATAATGTAATTT
* *
81221529 AAATTAATTTTTATATATTATGTAATTT
1 AAATTAATTTTTACATATAATGTAATTT
81221557 A
1 A
81221558 TAATACATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
AAATTAATTTTTACATATAATGTAATTT
Found at i:81227407 original size:13 final size:12
Alignment explanation
Indices: 81227374--81227404 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
81227364 CGAACCTGAT
81227374 TTTTTA-TAAAA
1 TTTTTATTAAAA
81227385 TTTTTATTAAAA
1 TTTTTATTAAAA
81227397 TTTTTATT
1 TTTTTATT
81227405 TAATGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTTTATTAAAA
Found at i:81228385 original size:288 final size:279
Alignment explanation
Indices: 81227872--81228612 Score: 785
Period size: 288 Copynumber: 2.7 Consensus size: 279
81227862 TTTATTTATT
*
81227872 TATTTTAAACAAATCAGTTTAATAT-A-ATGCTATTGGGAAAATAATTAAATGATTTA-TT-TGT
1 TATTTTAAACAAATCAGTTTAATATGATAT-C-ATTGGGAAAATAATTAAATGATTTATTTATTT
* *
81227933 -T-TGTTTTTATTTTAGGTATGGCAATAACAGGTCCGGAGGAAAAATGTAATGAAGAATCGAAAA
64 ATCTGTTTTTATTTTAGGTATGGCAATAACAGGTCCGGAGAAAAAACGTAATGAAGAATCGAAAA
* * * *
81227996 GTAAAAACTCTAACCTATATGTCTAAAAAGTAAATTATTTTAGTCGAATTTACATTGTTAAAAAT
129 GTAAAAACTCTAACCTACACGTCTAAAAAATAAATTATTTTAGCCGAATTTACATTGTTAAAAAT
*
81228061 TTGAATTAAAATTATCATGTCATATTACATATTAAATCAAAAATAAAAATAAAAATTGCTTAACT
194 TTGAATTAAAATTATCATATCATATTACATATTAAATCAAAAATAAAAAT----ATT--TTAACT
81228126 AGGTGAAGATGAAATTATTTAAAAAAAAACA
253 AGGTGAAGATGAAATTATTT---AAAAAA-A
*
81228157 TATTTTAGACAAATCAGTTTAATATGATATCATTGGGGAAAATAATTAAATGATTTATTTATTTA
1 TATTTTAAACAAATCAGTTTAATATGATATCATT-GGGAAAATAATTAAATGATTTATTTATTTA
* ** * * *
81228222 TCTGTTTTTATTTTAGGTAT-G-ACT-ACAGGTTTGGAGAAAAAACGTGATGAATAA-CAGAAAG
65 TCTGTTTTTATTTTAGGTATGGCAATAACAGGTCCGGAGAAAAAACGTAATGAAGAATC-GAAAA
* * **
81228283 GTAAATAC-CTTAATCTACACGTCTAAAAAAATAAATTATTTTAGCCGAATTTATGTTGTTAAAA
129 GTAAAAACTC-TAACCTACACGTCT-AAAAAATAAATTATTTTAGCCGAATTTACATTGTTAAAA
* * * *
81228347 ATTTGAATTGAAATTCTCATATCATATTGCATATTAAATCAAAAATAAAAATGTTTTAACTAGGT
192 ATTTGAATTAAAATTATCATATCATATTACATATTAAATCAAAAATAAAAATATTTTAACTAGGT
81228412 GAAGATGAAATTATTTAAAAAAA
257 GAAGATGAAATTATTTAAAAAAA
* * * * *
81228435 TA--TTAAACAAATCAATTTAATATGGTATCACTAGAGAAAATAATTGAATGATTTATTTATTTA
1 TATTTTAAACAAATCAGTTTAATATGATATCA-TTGGGAAAATAATTAAATGATTTATTTATTTA
** * * *
81228498 TCCATTTTTA-TTT---TA-GGC----ACAGGTTCGGA-AGAAAAACGAAATGAGGAATCGAAAA
65 TCTGTTTTTATTTTAGGTATGGCAATAACAGGTCCGGAGA-AAAAACGTAATGAAGAATCGAAAA
* * * * *
81228553 GTAAAGAC-CTTAATCTACATGTGTAAAAAATAATTTATTTTAGCC-AATTTTACATTGTTA
129 GTAAAAACTC-TAACCTACACGTCTAAAAAATAAATTATTTTAGCCGAA-TTTACATTGTTA
81228613 TAGAAAATAA
Statistics
Matches: 397, Mismatches: 43, Indels: 48
0.81 0.09 0.10
Matches are distributed among these distances:
268 2 0.01
269 31 0.08
270 48 0.12
271 1 0.00
272 3 0.01
275 3 0.01
276 61 0.15
277 1 0.00
278 3 0.01
279 6 0.02
282 26 0.07
284 2 0.01
285 27 0.07
286 26 0.07
287 50 0.13
288 87 0.22
289 2 0.01
290 18 0.05
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (279 bp):
TATTTTAAACAAATCAGTTTAATATGATATCATTGGGAAAATAATTAAATGATTTATTTATTTAT
CTGTTTTTATTTTAGGTATGGCAATAACAGGTCCGGAGAAAAAACGTAATGAAGAATCGAAAAGT
AAAAACTCTAACCTACACGTCTAAAAAATAAATTATTTTAGCCGAATTTACATTGTTAAAAATTT
GAATTAAAATTATCATATCATATTACATATTAAATCAAAAATAAAAATATTTTAACTAGGTGAAG
ATGAAATTATTTAAAAAAA
Found at i:81228639 original size:4 final size:4
Alignment explanation
Indices: 81228630--81228657 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
81228620 TAATTGAATG
81228630 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
81228658 TAGATACGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:81229026 original size:162 final size:158
Alignment explanation
Indices: 81228466--81229072 Score: 620
Period size: 156 Copynumber: 3.9 Consensus size: 158
81228456 ATGGTATCAC
81228466 TAGAGAAAATAATTGAATG----ATTTATTTATTTATCCA---TTTTTATTTTA-G---G-C-AC
1 TAGAGAAAATAATTGAATGATTTATTTATTTATTTATCCAGTTTTTTTATTTTAGGTACGACTAC
* * * * * * *
81228518 AGGTTCGGAAGAAAAACGAAATGAGGAATC-GAAAAGTAAAGACCTTAATCTACATGTGTAAAAA
66 AAGTTTGGAAGAAAAACGTAATGAAGAA-CGGAAAAGTAAAGACCTTAATCTACACGTCTAAAGA
*
81228582 ATAATTTATTTTAGCC-AATTTTACATTGT
130 ATAAATTATTTTAGCCGAA-TTTACATTGT
* * *
81228611 TATAGAAAATAATTGAATGATTTATTTATTTA-TT-T--A-TTTATTTATTTTAGATACGACTAC
1 TAGAGAAAATAATTGAATGATTTATTTATTTATTTATCCAGTTTTTTTATTTTAGGTACGACTAC
* * * * * * *
81228671 AAGTTTGGAAGGAAACCGCAATGAAGAACGGAAAAGTAAGGAACTTAATCTACATGTCCAAA-AA
66 AAGTTTGGAAGAAAAACGTAATGAAGAACGGAAAAGTAAAGACCTTAATCTACACGTCTAAAGAA
* *
81228735 TTATATTAATTTAGCCGAATTTACATTGT
131 -TAAATTATTTTAGCCGAATTTACATTGT
*
81228764 TAGCTA-AAAATAATTGAATGATTTACTTT-TTTATTTATCC-G--TTTTTATTTTAGGTACGGC
1 TAG--AGAAAATAATTGAATGATTTA-TTTATTTATTTATCCAGTTTTTTTATTTTAGGTACGAC
* * * * * * * *
81228824 CACAGGTTCGGAAGAAAAACGTAATCAAGAACTGAAAAGTAAAGACTTTAATCTACACATTTAAA
63 TACAAGTTTGGAAGAAAAACGTAATGAAGAACGGAAAAGTAAAGACCTTAATCTACACGTCTAAA
* *
81228889 GAATAAATTATTTTGGCCGAATTTATATTGT
128 GAATAAATTATTTTAGCCGAATTTACATTGT
81228920 TAGAGAAAATAATTGAATGATTTATTTATTTATTTATCCATTTGTTTTTTTTATTTTAGGTACGA
1 TAGAGAAAATAATTGAATGATTTATTTATTTATTTATCCA---G-TTTTTTTATTTTAGGTACGA
* *
81228985 CTACAAGTTTGGAAGAAAAACGTAATGAAGAATC-AAAAAGTAAAGACCTTAATCTACGCGTCTA
62 CTACAAGTTTGGAAGAAAAACGTAATGAAGAA-CGGAAAAGTAAAGACCTTAATCTACACGTCTA
*
81229049 AAGAATAAATTATTTTAGTCGAAT
126 AAGAATAAATTATTTTAGCCGAAT
81229073 AAATAGTTTA
Statistics
Matches: 377, Mismatches: 51, Indels: 51
0.79 0.11 0.11
Matches are distributed among these distances:
145 19 0.05
147 11 0.03
148 2 0.01
149 9 0.02
151 1 0.00
152 4 0.01
153 76 0.20
154 29 0.08
155 36 0.10
156 94 0.25
157 2 0.01
159 1 0.00
162 92 0.24
163 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (158 bp):
TAGAGAAAATAATTGAATGATTTATTTATTTATTTATCCAGTTTTTTTATTTTAGGTACGACTAC
AAGTTTGGAAGAAAAACGTAATGAAGAACGGAAAAGTAAAGACCTTAATCTACACGTCTAAAGAA
TAAATTATTTTAGCCGAATTTACATTGT
Found at i:81231505 original size:83 final size:83
Alignment explanation
Indices: 81231366--81231534 Score: 329
Period size: 83 Copynumber: 2.0 Consensus size: 83
81231356 AAAAAAAATC
81231366 GAATTTACATTATTAATAATTTGAATTAAAATTCTCATATCATATTGCATATTAAATAAAAAATA
1 GAATTTACATTATTAATAATTTGAATTAAAATTCTCATATCATATTGCATATTAAATAAAAAATA
81231431 AAAATGGTTTAACTAGGT
66 AAAATGGTTTAACTAGGT
*
81231449 GAATTTACATTATTAATAATTTGAATTGAAATTCTCATATCATATTGCATATTAAATAAAAAATA
1 GAATTTACATTATTAATAATTTGAATTAAAATTCTCATATCATATTGCATATTAAATAAAAAATA
81231514 AAAATGGTTTAACTAGGT
66 AAAATGGTTTAACTAGGT
81231532 GAA
1 GAA
81231535 GATGAAATTA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (83 bp):
GAATTTACATTATTAATAATTTGAATTAAAATTCTCATATCATATTGCATATTAAATAAAAAATA
AAAATGGTTTAACTAGGT
Found at i:81249301 original size:169 final size:165
Alignment explanation
Indices: 81248965--81249302 Score: 439
Period size: 169 Copynumber: 2.0 Consensus size: 165
81248955 AGCTTAAATT
* * * *
81248965 TAAAGCATGCAATGGGGTTTGTGAGATAGGGAAGATTATATTTCATGGTCTAGTTTAAGGTCGAA
1 TAAAGCATGCAATGGGGTTTGTAAGATAGGAAAGATTATACTTCATGGTCTAGTTTAAGGTCAAA
* * * *
81249030 TGATATTTTGCATTATAATAGAGAAGGTTTTAGTGTTTTTGAGCTTTTAGCTTTATAGTAGTTAA
66 TGATATTTTGCATTATAACAAAGAAGGTTTTAGTGTTTTTGAGCTTTGAGCTTTATAATAGTTAA
*
81249095 CTTTGTTTTATATGAAGCTATGTTTATATATTATATATA
131 ATTTGTTTTATATGAAGCTA----TATATATTATATATA
81249134 TAAAGCATGCAATGGGAG-TTGTAAGATAGGAAAGATTATACTTCATGGTCTAGTTTAAGGTCAA
1 TAAAGCATGCAATGGG-GTTTGTAAGATAGGAAAGATTATACTTCATGGTCTAGTTTAAGGTCAA
*
81249198 ATGATATTTTGTATTATAACAAAGAAGGTTTTAGTGTTTTTGAACTTTTAGCTTTGAGCTTTATA
65 ATGATATTTTGCATTATAACAAAGAAGGTTTTAGTGTTTTTG-------AGCTTTGAGCTTTATA
*
81249263 ATAGTTAAATTTGTTTTGATATGAAGC-AAATATA-TATATA
123 ATAGTTAAATTTGTTTT-ATATGAAGCTATATATATTATATA
81249303 ATTTATAATG
Statistics
Matches: 149, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
169 97 0.65
170 1 0.01
171 6 0.04
172 5 0.03
176 31 0.21
177 9 0.06
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.41
Consensus pattern (165 bp):
TAAAGCATGCAATGGGGTTTGTAAGATAGGAAAGATTATACTTCATGGTCTAGTTTAAGGTCAAA
TGATATTTTGCATTATAACAAAGAAGGTTTTAGTGTTTTTGAGCTTTGAGCTTTATAATAGTTAA
ATTTGTTTTATATGAAGCTATATATATTATATATA
Found at i:81252973 original size:8 final size:8
Alignment explanation
Indices: 81252960--81252992 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
81252950 ATATGTAATT
81252960 TTTATATA
1 TTTATATA
81252968 TTTATATA
1 TTTATATA
81252976 TTTATATA
1 TTTATATA
81252984 TATTATATA
1 T-TTATATA
81252993 AAGGTAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTTATATA
Found at i:81266732 original size:5 final size:5
Alignment explanation
Indices: 81266719--81266755 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
81266709 AATCAAAGGT
*
81266719 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG -AAAAG AAAAG A
81266756 TCTATAAGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:81266982 original size:191 final size:191
Alignment explanation
Indices: 81266744--81267095 Score: 544
Period size: 191 Copynumber: 1.8 Consensus size: 191
81266734 AAAAGAAAAG
* *
81266744 AAAAAGAAAAGATCTATAAGTCAAAATCATGCTATCATGCGGCTAAAAGCACTATTTTCAAAATC
1 AAAAAAAAAAGATCTATAAGTCAAAATCATGCAATCATGCGGCTAAAAGCACTATTTTCAAAATC
* * * * *
81266809 GGATTGATTGATCAGACCAGTCTAATCAAGACTT-GGTTAGGATATTGATTTAGAATAAGGGTTG
66 GGATTGACTAATCAGACCAGTCCAATCAAGA-TTCGATTAAGATATTGATTTAGAATAAGGGTTG
* *
81266873 GATTAGTTGACTTGTAAAACTAGTACGAATTGCTTAAAGTGTGTTCCAATAACCAAGGGTAA
130 GATTAATTGACTTGCAAAACTAGTACGAATTGCTTAAAGTGTGTTCCAATAACCAAGGGTAA
* *
81266935 AAAAAAAAAAGATCTATAAGTCAAAATCATGCAATTATGCGGCTAAAAGTACTATTTTCAAAATC
1 AAAAAAAAAAGATCTATAAGTCAAAATCATGCAATCATGCGGCTAAAAGCACTATTTTCAAAATC
** *
81267000 GGATTGACTAATTGGACCAGTCCAATCAAGATTCGATTAAGATATTGATTTAGGATAAGGGTTGG
66 GGATTGACTAATCAGACCAGTCCAATCAAGATTCGATTAAGATATTGATTTAGAATAAGGGTTGG
* *
81267065 ATTAATTGACTTGCAAAATTGGTACGAATTG
131 ATTAATTGACTTGCAAAACTAGTACGAATTG
81267096 GGCTAAAAAT
Statistics
Matches: 144, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
190 2 0.01
191 142 0.99
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (191 bp):
AAAAAAAAAAGATCTATAAGTCAAAATCATGCAATCATGCGGCTAAAAGCACTATTTTCAAAATC
GGATTGACTAATCAGACCAGTCCAATCAAGATTCGATTAAGATATTGATTTAGAATAAGGGTTGG
ATTAATTGACTTGCAAAACTAGTACGAATTGCTTAAAGTGTGTTCCAATAACCAAGGGTAA
Found at i:81268767 original size:86 final size:87
Alignment explanation
Indices: 81268657--81268837 Score: 346
Period size: 86 Copynumber: 2.1 Consensus size: 87
81268647 GGATGGCTAA
81268657 TTTTAGAACCAATTTTATATAATTACATGACAAGACATGTGTCAGGTATAAATTTTAAAAAATAT
1 TTTTA-AACCAATTTTATATAATTACATGACAAGACATGTGTCAGGTATAAATTTTAAAAAATAT
81268722 GTAAATTAATTTAAAAAATAATT
65 GTAAATTAATTTAAAAAATAATT
81268745 TTTTAAA-CAATTTTATATAATTACATGACAAGACATGTGTCAGGTATAAATTTTAAAAAATATG
1 TTTTAAACCAATTTTATATAATTACATGACAAGACATGTGTCAGGTATAAATTTTAAAAAATATG
81268809 TAAATTAATTTAAAAAATAATT
66 TAAATTAATTTAAAAAATAATT
81268831 TTTTAAA
1 TTTTAAA
81268838 TTTAATATGT
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
86 86 0.92
87 2 0.02
88 5 0.05
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (87 bp):
TTTTAAACCAATTTTATATAATTACATGACAAGACATGTGTCAGGTATAAATTTTAAAAAATATG
TAAATTAATTTAAAAAATAATT
Found at i:81271183 original size:15 final size:16
Alignment explanation
Indices: 81271163--81271195 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
81271153 ATATATATTT
81271163 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
81271178 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
81271195 T
1 T
81271196 ATAATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:81271257 original size:32 final size:32
Alignment explanation
Indices: 81271221--81271281 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
81271211 TTATATTGTC
81271221 AATTTGTGTA-TTGTTTTAAGAATTATTTTAGT
1 AATTT-TGTATTTGTTTTAAGAATTATTTTAGT
* * *
81271253 AATTTTTTATTTGTTTTAATATTTATTTT
1 AATTTTGTATTTGTTTTAAGAATTATTTT
81271282 TATGTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 3 0.12
32 22 0.88
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (32 bp):
AATTTTGTATTTGTTTTAAGAATTATTTTAGT
Found at i:81271299 original size:20 final size:22
Alignment explanation
Indices: 81271256--81271300 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
81271246 TTTTAGTAAT
* *
81271256 TTTTTATTTGTTTTAATATTTA
1 TTTTTATGTGTTTTAATATATA
81271278 TTTTTATGT-TTTTAA-ATATA
1 TTTTTATGTGTTTTAATATATA
81271298 TTT
1 TTT
81271301 GATTTATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 6 0.29
22 8 0.38
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (22 bp):
TTTTTATGTGTTTTAATATATA
Found at i:81271317 original size:26 final size:24
Alignment explanation
Indices: 81271271--81271330 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
81271261 ATTTGTTTTA
*
81271271 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
81271295 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
81271321 TTTTTTATTT
1 ATATTTATTT
81271331 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:81274096 original size:71 final size:71
Alignment explanation
Indices: 81274012--81274154 Score: 286
Period size: 71 Copynumber: 2.0 Consensus size: 71
81274002 TTGTTCAAGT
81274012 TTCTTGATGCTTCATTATCATCCATGTATGCATATAAGTTTCTCCACCTCAAAAGCTTCAAATTC
1 TTCTTGATGCTTCATTATCATCCATGTATGCATATAAGTTTCTCCACCTCAAAAGCTTCAAATTC
81274077 TTCTTC
66 TTCTTC
81274083 TTCTTGATGCTTCATTATCATCCATGTATGCATATAAGTTTCTCCACCTCAAAAGCTTCAAATTC
1 TTCTTGATGCTTCATTATCATCCATGTATGCATATAAGTTTCTCCACCTCAAAAGCTTCAAATTC
81274148 TTCTTC
66 TTCTTC
81274154 T
1 T
81274155 ATGCATTTTT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.41
Consensus pattern (71 bp):
TTCTTGATGCTTCATTATCATCCATGTATGCATATAAGTTTCTCCACCTCAAAAGCTTCAAATTC
TTCTTC
Found at i:81274396 original size:16 final size:16
Alignment explanation
Indices: 81274375--81274409 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
81274365 TTTTCATTTA
81274375 CTTAGGTTGGCTTACG
1 CTTAGGTTGGCTTACG
81274391 CTTAGGTTGGCTTACG
1 CTTAGGTTGGCTTACG
81274407 CTT
1 CTT
81274410 GATTTTAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.20, G:0.29, T:0.40
Consensus pattern (16 bp):
CTTAGGTTGGCTTACG
Found at i:81275314 original size:13 final size:13
Alignment explanation
Indices: 81275296--81275363 Score: 55
Period size: 13 Copynumber: 5.2 Consensus size: 13
81275286 CTAGTTTGAC
81275296 AATATTTTTAAAA
1 AATATTTTTAAAA
81275309 AATATTTTTAAAA
1 AATATTTTTAAAA
* ** * *
81275322 AGTGCTGTGAAAA
1 AATATTTTTAAAA
* * *
81275335 AGTACTTTTGAAA
1 AATATTTTTAAAA
*
81275348 AATATTTTTGAAA
1 AATATTTTTAAAA
81275361 AAT
1 AAT
81275364 TAAATTTAAA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (13 bp):
AATATTTTTAAAA
Found at i:81280499 original size:21 final size:21
Alignment explanation
Indices: 81280473--81280513 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81280463 AGACGAGCAA
* *
81280473 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
81280494 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
81280514 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:81284324 original size:21 final size:22
Alignment explanation
Indices: 81284298--81284346 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
81284288 GGAGATTTAT
* *
81284298 TCAGAAG-TAATAGCAGCAGAA
1 TCAGAAGATAATAACAGCAAAA
81284319 TCAGAAGATAATAACAGCAAAA
1 TCAGAAGATAATAACAGCAAAA
*
81284341 TTAGAA
1 TCAGAA
81284347 AAAGGCACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.16
Consensus pattern (22 bp):
TCAGAAGATAATAACAGCAAAA
Found at i:81287225 original size:22 final size:21
Alignment explanation
Indices: 81287195--81287235 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
81287185 TTTTTTTCAC
* *
81287195 TGTTGTTTGTTGTCATTTTGA
1 TGTTGTTTGCTATCATTTTGA
81287216 TGTTGTTTTGCTATCATTTT
1 TGTTG-TTTGCTATCATTTT
81287236 TCTATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.10, C:0.07, G:0.20, T:0.63
Consensus pattern (21 bp):
TGTTGTTTGCTATCATTTTGA
Found at i:81289363 original size:15 final size:15
Alignment explanation
Indices: 81289339--81289370 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81289329 ACGAAGTAGC
*
81289339 TCGTCTTTGTCGTTG
1 TCGTCGTTGTCGTTG
81289354 TCGTCGTTGTCGTTG
1 TCGTCGTTGTCGTTG
81289369 TC
1 TC
81289371 TTTGTCGCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.22, G:0.28, T:0.50
Consensus pattern (15 bp):
TCGTCGTTGTCGTTG
Found at i:81298094 original size:21 final size:21
Alignment explanation
Indices: 81298068--81298108 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81298058 ATCTGCTCAA
* *
81298068 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
81298089 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
81298109 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:81321706 original size:18 final size:18
Alignment explanation
Indices: 81321649--81321698 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
81321639 TCTTTTCAGA
* **
81321649 TTCATTTTCATCATCTTC
1 TTCATCTTCATCAGATTC
* *
81321667 TTCTTCTTCTTCAGATTC
1 TTCATCTTCATCAGATTC
81321685 TTCATCTTCATCAG
1 TTCATCTTCATCAG
81321699 TATCTTCAGC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.28, G:0.04, T:0.52
Consensus pattern (18 bp):
TTCATCTTCATCAGATTC
Found at i:81322088 original size:56 final size:56
Alignment explanation
Indices: 81321980--81322089 Score: 157
Period size: 56 Copynumber: 2.0 Consensus size: 56
81321970 AGTTCTTAAG
* * * * *
81321980 CAAACATTCTATCTTAGTGTCTTTAACATATATAACCATGAAAAAATAATAATAAT
1 CAAACATTCTAGCATAGCGTCTTTAACATACATAACCATGAAAAAACAATAATAAT
* *
81322036 CAAACATTCTAGCATAGCGTCTTTAACATACATAACCATGAAACAACGATAATA
1 CAAACATTCTAGCATAGCGTCTTTAACATACATAACCATGAAAAAACAATAATA
81322090 GTAGTTACCG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.29
Consensus pattern (56 bp):
CAAACATTCTAGCATAGCGTCTTTAACATACATAACCATGAAAAAACAATAATAAT
Found at i:81327269 original size:38 final size:38
Alignment explanation
Indices: 81327216--81327415 Score: 163
Period size: 38 Copynumber: 5.1 Consensus size: 38
81327206 AACATTTACT
* * *
81327216 ACACTGGCA-TCAAGCCTTTTAGGCATTAAGCTTAAATA
1 ACACTGGCACT-AAGCCTTCTAGGCACTAAGCTTGAATA
* * *
81327254 ACACTAGCACTAAGCCTGCTAGGCACTAAGTTTGAATA
1 ACACTGGCACTAAGCCTTCTAGGCACTAAGCTTGAATA
* * * *
81327292 GCACCGGCACTAAG-CTTGCTAGACACTAAGCCTGAATA
1 ACACTGGCACTAAGCCTT-CTAGGCACTAAGCTTGAATA
*
81327330 ACACTGGCACTAAGCCTGAATAAC-ACCGGCACTAATCTTGAATA
1 ACACTGGCACTAAGCCT---T--CTA--GGCACTAAGCTTGAATA
** * *
81327374 ACGTTGGCACTAAGCCTGCTAGGCACTAAGCCTGAATA
1 ACACTGGCACTAAGCCTTCTAGGCACTAAGCTTGAATA
81327412 ACAC
1 ACAC
81327416 CGCATTTGAA
Statistics
Matches: 126, Mismatches: 26, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
37 2 0.02
38 87 0.69
39 4 0.03
40 1 0.01
42 2 0.02
43 1 0.01
44 29 0.23
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (38 bp):
ACACTGGCACTAAGCCTTCTAGGCACTAAGCTTGAATA
Found at i:81327343 original size:22 final size:22
Alignment explanation
Indices: 81327315--81327391 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
81327305 GCTTGCTAGA
81327315 CACTAAGCCTGAATAACACTGG
1 CACTAAGCCTGAATAACACTGG
*
81327337 CACTAAGCCTGAATAACACCGG
1 CACTAAGCCTGAATAACACTGG
* * **
81327359 CACTAATCTTGAATAACGTTGG
1 CACTAAGCCTGAATAACACTGG
81327381 CACTAAGCCTG
1 CACTAAGCCTG
81327392 CTAGGCACTA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (22 bp):
CACTAAGCCTGAATAACACTGG
Found at i:81332749 original size:21 final size:21
Alignment explanation
Indices: 81332723--81332763 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81332713 AGACGAGCAA
* *
81332723 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
81332744 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
81332764 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:81336624 original size:22 final size:22
Alignment explanation
Indices: 81336594--81336638 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
81336584 AAATTTCAGG
81336594 TATAAATAAGGAAATT-TTTTAA
1 TATAAATAA-GAAATTATTTTAA
* *
81336616 TATATATAAGTAATTATTTTAA
1 TATAAATAAGAAATTATTTTAA
81336638 T
1 T
81336639 TCTCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (22 bp):
TATAAATAAGAAATTATTTTAA
Found at i:81342083 original size:19 final size:20
Alignment explanation
Indices: 81342052--81342089 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81342042 AATATATATT
81342052 AGTGGGTTATTTT-TTCAAG
1 AGTGGGTTATTTTGTTCAAG
81342071 AGTGGG-TAGTTTTGTTCAA
1 AGTGGGTTA-TTTTGTTCAA
81342090 ATGTGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.12
19 10 0.59
20 5 0.29
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (20 bp):
AGTGGGTTATTTTGTTCAAG
Found at i:81345442 original size:16 final size:16
Alignment explanation
Indices: 81345421--81345452 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81345411 TCGTACGAAA
81345421 ACGATTAATCCGGTAT
1 ACGATTAATCCGGTAT
81345437 ACGATTAATCCGGTAT
1 ACGATTAATCCGGTAT
81345453 GTACCACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (16 bp):
ACGATTAATCCGGTAT
Found at i:81348952 original size:26 final size:26
Alignment explanation
Indices: 81348923--81349030 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
81348913 TGAAATGCCC
* *
81348923 ATCATAGAACATTTACCTAAATCATT
1 ATCATGGAACATTTACCTAAACCATT
*
81348949 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
81348975 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
81349001 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
81349027 ATCA
1 ATCA
81349031 ATTTATACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:81349001 original size:52 final size:52
Alignment explanation
Indices: 81348923--81349030 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
81348913 TGAAATGCCC
81348923 ATCATAGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
* *
81348975 ATCATGGAATATTTACCT-AATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATAGAACATTTACCTAAAT-CATTATCATGGAACATTTACCTAACCCATT
81349027 ATCA
1 ATCA
81349031 ATTTATACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
51 3 0.06
52 50 0.94
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (52 bp):
ATCATAGAACATTTACCTAAATCATTATCATGGAACATTTACCTAACCCATT
Found at i:81352764 original size:18 final size:18
Alignment explanation
Indices: 81352741--81352776 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81352731 AAAATTATGC
81352741 ATTAATGACATAGAATAA
1 ATTAATGACATAGAATAA
* *
81352759 ATTAATGTCATTGAATAA
1 ATTAATGACATAGAATAA
81352777 TTGGAAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (18 bp):
ATTAATGACATAGAATAA
Found at i:81356149 original size:11 final size:12
Alignment explanation
Indices: 81356127--81356155 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
81356117 CTAAAATTAT
81356127 AATTATATTTTA
1 AATTATATTTTA
81356139 AATTA-ATTTTA
1 AATTATATTTTA
81356150 AATTAT
1 AATTAT
81356156 TAAATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AATTATATTTTA
Found at i:81359216 original size:20 final size:20
Alignment explanation
Indices: 81359191--81359231 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81359181 TAACAAAATT
81359191 ATATAAACATAATGTTTTTA
1 ATATAAACATAATGTTTTTA
** *
81359211 ATATAAGTATAGTGTTTTTA
1 ATATAAACATAATGTTTTTA
81359231 A
1 A
81359232 CGGATTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (20 bp):
ATATAAACATAATGTTTTTA
Found at i:81367939 original size:20 final size:20
Alignment explanation
Indices: 81367914--81367954 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81367904 TAACAAAATT
81367914 ATATAAACATAATGTTTTTA
1 ATATAAACATAATGTTTTTA
** *
81367934 ATATAAGTATAGTGTTTTTA
1 ATATAAACATAATGTTTTTA
81367954 A
1 A
81367955 CGGATTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (20 bp):
ATATAAACATAATGTTTTTA
Found at i:81380050 original size:21 final size:21
Alignment explanation
Indices: 81380024--81380064 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81380014 AGACGAGCAA
* *
81380024 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
81380045 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
81380065 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:81434274 original size:18 final size:18
Alignment explanation
Indices: 81434247--81434281 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81434237 GCGCTCTCGT
81434247 TCTCTCTCCTTCTCCCGC
1 TCTCTCTCCTTCTCCCGC
*
81434265 TCTCTTTCCTTCTCCCG
1 TCTCTCTCCTTCTCCCG
81434282 TCGCTCCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.51, G:0.06, T:0.43
Consensus pattern (18 bp):
TCTCTCTCCTTCTCCCGC
Found at i:81434342 original size:6 final size:6
Alignment explanation
Indices: 81434301--81434353 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
81434291 GATGCGCAAA
* * * *
81434301 CGTTCA CGTTCT CGTTCC CGTTCT C-TTAGT CGTTCT CTTTCT CGTTCT
1 CGTTCT CGTTCT CGTTCT CGTTCT CGTT-CT CGTTCT CGTTCT CGTTCT
81434349 CGTTC
1 CGTTC
81434354 CCTCTCCCTC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
5 2 0.05
6 34 0.89
7 2 0.05
ACGTcount: A:0.04, C:0.34, G:0.15, T:0.47
Consensus pattern (6 bp):
CGTTCT
Found at i:81444076 original size:21 final size:21
Alignment explanation
Indices: 81444043--81444082 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81444033 ATAACATCAT
*
81444043 AAATTTATAAATTGATTATTG
1 AAATTTATAAATTCATTATTG
81444064 AAATTTA-ATAATTCATTAT
1 AAATTTATA-AATTCATTAT
81444083 AAATTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (21 bp):
AAATTTATAAATTCATTATTG
Found at i:81444246 original size:32 final size:32
Alignment explanation
Indices: 81444210--81444270 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
81444200 TTATAAACTT
*
81444210 ATAAATTAATCACTTGAATTTAATAACTCGTG
1 ATAAATTAATCAATTGAATTTAATAACTCGTG
* * *
81444242 ATAAATTAATTAATTTAATTTGATAACTC
1 ATAAATTAATCAATTGAATTTAATAACTC
81444271 TTATTGATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (32 bp):
ATAAATTAATCAATTGAATTTAATAACTCGTG
Found at i:81444350 original size:154 final size:148
Alignment explanation
Indices: 81444086--81444477 Score: 452
Period size: 154 Copynumber: 2.6 Consensus size: 148
81444076 TCATTATAAA
* * *
81444086 TTAATTAATTAATTTCATTTGATAACTCATATTGATTAATTGAGTAATTTGTTAAATTTATTAAC
1 TTAATTAATTAATTTAATTTGATAACTCATATTGATTAATTGAG---CTTGTTAAATTTATAAAC
* * * * * *
81444151 TTTATAATTTATCATATTAATAAATATATTCTACTGTGAGGTTGAAATATTATAAACTTATAAAT
63 TTTATAATTAATCATGTGAA-AAATGTATTCTACTATGAGGTTGAAACATTATAAACTTATAAAT
*
81444216 TAATCACTTGAATTTAATAACT
127 TAATCACTTAAATTTAATAACT
* *
81444238 CGTGATAAATTAATTAATTTAATTTGATAACTCTTATTGATTAATTGAGCTTGTTAGATTTATAA
1 --T--T-AATTAATTAATTTAATTTGATAACTCATATTGATTAATTGAGCTTGTTAAATTTATAA
*
81444303 ACTTTATAATTAATCATGTGAAAGAATGTATTCTACTATGAGTTTGAAACATTATAAACTTATAA
61 ACTTTATAATTAATCATGTGAAA-AATGTATTCTACTATGAGGTTGAAACATTATAAACTTATAA
* *
81444368 ATTGATTACTTAAATTTAATAACT
125 ATTAATCACTTAAATTTAATAACT
* * * *
81444392 TTAA-T--TT-ATTTAATTTGATAACTCATACTGATTAATTAAGCTTGTTATATTTATGAA-TGT
1 TTAATTAATTAATTTAATTTGATAACTCATATTGATTAATTGAGCTTGTTAAATTTATAAACT-T
* *
81444452 TGTAATTAATTATGTGAAATAATGTA
65 TATAATTAATCATGTGAAA-AATGTA
81444478 AAATAAAATA
Statistics
Matches: 210, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
144 1 0.00
145 69 0.33
146 2 0.01
148 1 0.00
149 2 0.01
150 1 0.00
152 1 0.00
153 1 0.00
154 91 0.43
156 1 0.00
157 40 0.19
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (148 bp):
TTAATTAATTAATTTAATTTGATAACTCATATTGATTAATTGAGCTTGTTAAATTTATAAACTTT
ATAATTAATCATGTGAAAAATGTATTCTACTATGAGGTTGAAACATTATAAACTTATAAATTAAT
CACTTAAATTTAATAACT
Found at i:81450245 original size:19 final size:20
Alignment explanation
Indices: 81450223--81450263 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
81450213 ATTTAATTTC
*
81450223 TATTTTTTATT-TTTAAAAA
1 TATTTTATATTATTTAAAAA
81450242 TATTTTATATTAGTTTAAAAA
1 TATTTTATATTA-TTTAAAAA
81450263 T
1 T
81450264 TTATTTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
21 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTTTATATTATTTAAAAA
Found at i:81456114 original size:21 final size:21
Alignment explanation
Indices: 81456088--81456128 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81456078 ATCTGCTCAA
* *
81456088 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
81456109 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
81456129 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:81464188 original size:52 final size:53
Alignment explanation
Indices: 81464118--81464222 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 53
81464108 ACCTCTTTTG
81464118 CTTCTTTGTTTGAATTTTGTTTATTTTTCATGCTTTAATTTTGGCTT-TTTAT
1 CTTCTTTGTTTGAATTTTGTTTATTTTTCATGCTTTAATTTTGGCTTCTTTAT
* *
81464170 CTTCTTTGTTTGAATTTTGTTTATTTTTTATGCTTTAATTTTGGTTTCTTTAT
1 CTTCTTTGTTTGAATTTTGTTTATTTTTCATGCTTTAATTTTGGCTTCTTTAT
81464223 TTTTGATCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 45 0.90
53 5 0.10
ACGTcount: A:0.13, C:0.09, G:0.11, T:0.67
Consensus pattern (53 bp):
CTTCTTTGTTTGAATTTTGTTTATTTTTCATGCTTTAATTTTGGCTTCTTTAT
Found at i:81464209 original size:24 final size:24
Alignment explanation
Indices: 81464130--81464212 Score: 80
Period size: 24 Copynumber: 3.3 Consensus size: 24
81464120 TCTTTGTTTG
*
81464130 AATTTTGTTTATTTTTCATGCTTT
1 AATTTTGTTTATTTTTTATGCTTT
*
81464154 AATTTTGGCTTT-TTATCTTCTTTG-TTT
1 AATTTT-G-TTTATT-T-TT-TATGCTTT
81464181 GAATTTTGTTTATTTTTTATGCTTT
1 -AATTTTGTTTATTTTTTATGCTTT
81464206 AATTTTG
1 AATTTTG
81464213 GTTTCTTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
24 16 0.33
25 8 0.17
26 8 0.17
27 8 0.17
28 8 0.17
ACGTcount: A:0.16, C:0.07, G:0.11, T:0.66
Consensus pattern (24 bp):
AATTTTGTTTATTTTTTATGCTTT
Found at i:81468997 original size:17 final size:17
Alignment explanation
Indices: 81468976--81469039 Score: 65
Period size: 17 Copynumber: 3.5 Consensus size: 17
81468966 GGGTAATGAG
81468976 GTTAGTGGAGTGATGGA
1 GTTAGTGGAGTGATGGA
*
81468993 ATTAGTGGCAAGTAGTGATGGA
1 GTTAGT-G---G-AGTGATGGA
*
81469015 GTTAGTGGGGTGATGGA
1 GTTAGTGGAGTGATGGA
81469032 GTTAGTGG
1 GTTAGTGG
81469040 TCGATTTAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 21 0.54
18 2 0.05
21 2 0.05
22 14 0.36
ACGTcount: A:0.23, C:0.02, G:0.45, T:0.30
Consensus pattern (17 bp):
GTTAGTGGAGTGATGGA
Found at i:81469537 original size:18 final size:19
Alignment explanation
Indices: 81469514--81469577 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 19
81469504 TATCGTGATT
81469514 TGAAGCT-CGAATGCTAAC
1 TGAAGCTACGAATGCTAAC
81469532 TGAAGCATAC-AAGTGCTAAAC
1 TGAAGC-TACGAA-TGCT-AAC
* * *
81469553 GGAAG-TCCGAAGGCTAAC
1 TGAAGCTACGAATGCTAAC
81469571 TGAAGCT
1 TGAAGCT
81469578 CATCGAGTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 11
0.71 0.08 0.22
Matches are distributed among these distances:
18 13 0.36
19 9 0.25
20 7 0.19
21 7 0.19
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (19 bp):
TGAAGCTACGAATGCTAAC
Found at i:81482447 original size:20 final size:20
Alignment explanation
Indices: 81482422--81482463 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81482412 TAAATTATTA
81482422 AAAAAATTAAAATTTA-TGAT
1 AAAAAA-TAAAATTTATTGAT
*
81482442 AAAAAATATAATTTATTGAT
1 AAAAAATAAAATTTATTGAT
81482462 AA
1 AA
81482464 TAGTGTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAAAATAAAATTTATTGAT
Found at i:81507895 original size:23 final size:22
Alignment explanation
Indices: 81507859--81507904 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
81507849 ATTAATTTTT
*
81507859 AGAAATTATGGAAAAATATTAA
1 AGAAATTATAGAAAAATATTAA
*
81507881 AGAAAGTTATAGAAAATTATTAA
1 AGAAA-TTATAGAAAAATATTAA
81507904 A
1 A
81507905 ATGATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (22 bp):
AGAAATTATAGAAAAATATTAA
Found at i:81510513 original size:20 final size:20
Alignment explanation
Indices: 81510488--81510537 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
81510478 TGGCTTAAAA
81510488 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
81510508 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
81510525 GTGGTAGTGGATT
1 TTGGTAGTGGATT
81510538 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:81515142 original size:20 final size:20
Alignment explanation
Indices: 81515117--81515166 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
81515107 TGGCTTAAAA
81515117 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
81515137 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
81515154 GTGGTAGTGGATT
1 TTGGTAGTGGATT
81515167 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:81520266 original size:24 final size:25
Alignment explanation
Indices: 81520219--81520300 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 25
81520209 CCATGTAACC
*
81520219 GGAAGCTCATA-AGAGTC-ATAATCG
1 GGAAGCTCA-AGAGAGCCAATAATCG
81520243 GGAAGCTCAAGCA-AGCCAAT-ATCG
1 GGAAGCTCAAG-AGAGCCAATAATCG
* * *
81520267 GGAAGCTCCAGAGAGCCATTAATTG
1 GGAAGCTCAAGAGAGCCAATAATCG
81520292 GGAAGCTCA
1 GGAAGCTCA
81520301 TGAAAGAGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
23 2 0.04
24 32 0.67
25 14 0.29
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (25 bp):
GGAAGCTCAAGAGAGCCAATAATCG
Found at i:81530641 original size:14 final size:14
Alignment explanation
Indices: 81530622--81530669 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
81530612 GTTTACAAGT
81530622 AAAATATTTTTCGG
1 AAAATATTTTTCGG
81530636 AAAATAATTTTT-GG
1 AAAAT-ATTTTTCGG
*
81530650 AAAATA-ATTTCTGG
1 AAAATATTTTTC-GG
81530664 AAAATA
1 AAAATA
81530670 ATTTCTGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.10
13 1 0.03
14 20 0.67
15 6 0.20
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (14 bp):
AAAATATTTTTCGG
Found at i:81530654 original size:28 final size:29
Alignment explanation
Indices: 81530622--81530687 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
81530612 GTTTACAAGT
* *
81530622 AAAATATTTTTC-GGAAAATAATTTTTGG
1 AAAATATTTTTCTGGAAAATAATTTCTGA
*
81530650 AAAATA-ATTTCTGGAAAATAATTTCTGA
1 AAAATATTTTTCTGGAAAATAATTTCTGA
81530678 AAAATGATTT
1 AAAAT-ATTT
81530688 ACTTTTCTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 4 0.13
28 25 0.81
29 1 0.03
30 1 0.03
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (29 bp):
AAAATATTTTTCTGGAAAATAATTTCTGA
Found at i:81530670 original size:14 final size:14
Alignment explanation
Indices: 81530630--81530687 Score: 82
Period size: 14 Copynumber: 4.2 Consensus size: 14
81530620 GTAAAATATT
81530630 TTTC-GGAAAATAA
1 TTTCTGGAAAATAA
*
81530643 TTTTTGGAAAATAA
1 TTTCTGGAAAATAA
81530657 TTTCTGGAAAATAA
1 TTTCTGGAAAATAA
* *
81530671 TTTCTGAAAAATGA
1 TTTCTGGAAAATAA
81530685 TTT
1 TTT
81530688 ACTTTTCTAG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
13 3 0.08
14 37 0.93
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATAA
Found at i:81530801 original size:18 final size:18
Alignment explanation
Indices: 81530778--81530815 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
81530768 CTGTTTTTAC
81530778 ATATATATTAATAAATTT
1 ATATATATTAATAAATTT
81530796 ATATATATTAATAAATTT
1 ATATATATTAATAAATTT
81530814 AT
1 AT
81530816 CTTTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATATATTAATAAATTT
Found at i:81531008 original size:19 final size:19
Alignment explanation
Indices: 81530984--81531024 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81530974 GTAACTATCA
81530984 TTCTTACAAATCAAGCAGT
1 TTCTTACAAATCAAGCAGT
81531003 TTCTTACAAATCAAGCAGT
1 TTCTTACAAATCAAGCAGT
81531022 TTC
1 TTC
81531025 AGTTACTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (19 bp):
TTCTTACAAATCAAGCAGT
Found at i:81532721 original size:18 final size:18
Alignment explanation
Indices: 81532695--81532758 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
81532685 ATTGAAACTT
*
81532695 CAACTTATAAATGAACAA
1 CAACATATAAATGAACAA
81532713 CAACATATAAATGAACAA
1 CAACATATAAATGAACAA
*
81532731 CAAC-TCCCTAAA-GAACAA
1 CAACAT--ATAAATGAACAA
81532749 CAACATATAA
1 CAACATATAA
81532759 CTTATTTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.56, C:0.22, G:0.05, T:0.17
Consensus pattern (18 bp):
CAACATATAAATGAACAA
Found at i:81533511 original size:48 final size:47
Alignment explanation
Indices: 81533440--81533533 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 47
81533430 TTCAGATCAG
*
81533440 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGTCGTACCCAAAAACCAATT
1 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCGTACCC-AAAACCAATT
81533488 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCGTACCCAAAACCAAT
1 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCGTACCCAAAACCAAT
81533534 CTTACAGAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 9 0.20
48 36 0.80
ACGTcount: A:0.54, C:0.16, G:0.21, T:0.09
Consensus pattern (47 bp):
TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCGTACCCAAAACCAATT
Found at i:81539754 original size:12 final size:13
Alignment explanation
Indices: 81539737--81539773 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
81539727 GAACCGGACA
81539737 CGAACCGAA-CTC
1 CGAACCGAAGCTC
81539749 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
81539761 CGAACCGTAGCTC
1 CGAACCGAAGCTC
81539774 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:81541668 original size:10 final size:10
Alignment explanation
Indices: 81541625--81541664 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
81541615 TATGAAGAAT
81541625 GTTACAAAGTA
1 GTTAC-AAGTA
81541636 GTTACAAGTA
1 GTTACAAGTA
*
81541646 GTTACAAGTG
1 GTTACAAGTA
81541656 GTTACAAGT
1 GTTACAAGT
81541665 GGTTTTTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 23 0.82
11 5 0.18
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (10 bp):
GTTACAAGTA
Found at i:81542168 original size:112 final size:115
Alignment explanation
Indices: 81542020--81542237 Score: 334
Period size: 114 Copynumber: 1.9 Consensus size: 115
81542010 GCACATTCCA
* * * *
81542020 TATAAATTTTGCTTCCTGCATCTGTAAGTGAAATGTGTGT-T-TATATATTCTTTTTATATATTT
1 TATAAATTTTGCTACATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCGTTTGATATATTT
* *
81542083 GCGTGCATCCATAAGTGAAATTTGCATGTATATAT-TTCTTTCTATCTGT
66 GCATGCATCCATAAGTGAAATTTGCATCTATATATATTCTTTCTATCTGT
81542132 TATAAATTTTGCTACATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCGTTTGATATATTT
1 TATAAATTTTGCTACATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCGTTTGATATATTT
** *
81542197 GCATGCATCGGTAAGTGAAATTTGCATCTATTTATATTCTT
66 GCATGCATCCATAAGTGAAATTTGCATCTATATATATTCTT
81542238 GTGATATATT
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
112 38 0.40
113 1 0.01
114 50 0.53
115 5 0.05
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (115 bp):
TATAAATTTTGCTACATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCGTTTGATATATTT
GCATGCATCCATAAGTGAAATTTGCATCTATATATATTCTTTCTATCTGT
Found at i:81542233 original size:52 final size:52
Alignment explanation
Indices: 81542146--81542247 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 52
81542136 AATTTTGCTA
* ** *
81542146 CATGCATCTGTAAGTGAAATGTGTGTGTATATATATTCGTT-TGATATATTTG
1 CATGCATCGGTAAGTGAAATGTGCATCTATATATATTC-TTGTGATATATTTG
* *
81542198 CATGCATCGGTAAGTGAAATTTGCATCTATTTATATTCTTGTGATATATT
1 CATGCATCGGTAAGTGAAATGTGCATCTATATATATTCTTGTGATATATT
81542248 CTTTCTATCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 2 0.05
52 41 0.95
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (52 bp):
CATGCATCGGTAAGTGAAATGTGCATCTATATATATTCTTGTGATATATTTG
Found at i:81542273 original size:27 final size:27
Alignment explanation
Indices: 81542241--81542292 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
81542231 TATTCTTGTG
*
81542241 ATATATTCTTTCTATCTGTTTGTGTAT
1 ATATATTCTTTCTATCTGTATGTGTAT
81542268 ATATATTCTTTCTATCTGTATGTGT
1 ATATATTCTTTCTATCTGTATGTGT
81542293 GTGTGTCACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.58
Consensus pattern (27 bp):
ATATATTCTTTCTATCTGTATGTGTAT
Found at i:81543088 original size:4 final size:4
Alignment explanation
Indices: 81543081--81543114 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
81543071 GAAATGGTTG
*
81543081 GTTT GTTT GTTT GTTT GTTT GTTT -TTT TTTT GTT
1 GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTTT GTT
81543115 ATGATCATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (4 bp):
GTTT
Found at i:81545118 original size:218 final size:217
Alignment explanation
Indices: 81544731--81545355 Score: 906
Period size: 218 Copynumber: 2.9 Consensus size: 217
81544721 TTCAGATTTA
*
81544731 TGCTTATATTCGTCTTTTTAAATCTTGTGATGCCGTCATTTTTTTGATAGTTTATCGCCTGTTCT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGAT---GTCATTTTTTTGATAGTTTATCGCCTGTTAT
* * *
81544796 GTGTTTTGTTTTTTTTTTGTCGGTTGTTTTTTTCCCTCTGTAATCTGTATCGAGGGACATTTTCT
63 GTGTTTTATTTTTTTTTT-TCGGTTGTTTGTTT--CTCTGTAATCTGTATTGAGGGACATTTTCT
* *
81544861 TGCAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATATTTCTAACAACTATATAAG
125 TGGAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAG
*
81544926 TATCTACCCTAAAACCCTTATGAAACAC
190 TATCTACCCTAAAACCCTAATGAAACAC
*
81544954 TGC-T-TATTCGTCTTTTTAAATCTTGTGATGTCATTTTTTTGATAGTTTATTGCCTGTTATGTG
1 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCATTTTTTTGATAGTTTATCGCCTGTTATGTG
* * *
81545017 TTTTATTTATTTTTTTTTGGTTGTTTGTTTCTTGCTGTAATATGTATTGAGGGACATTTTTTTGG
66 TTTTATTT-TTTTTTTTCGGTTGTTTGTTTC-T-CTGTAATCTGTATTGAGGGACATTTTCTTGG
* *
81545082 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTATAATAACTATATAAGTAT
128 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTAT
81545147 CTACCCTAAAACCCTAATGAAACAC
193 CTACCCTAAAACCCTAATGAAACAC
* * *
81545172 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCGTCATTTTTTGATAGTTTATCACCTGTTATC
1 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCAT--TTTTTTGATAGTTTATCGCCTGTTATG
* *
81545237 TGTTTTATTTTATTTTTTTCGATTGTTTGTTTC-C----CTCTGTATTGAGGGACATTTTCTTGG
64 TGTTTTATTTT-TTTTTTTCGGTTGTTTGTTTCTCTGTAATCTGTATTGAGGGACATTTTCTTGG
* *
81545297 AAATCTTT-AGTCCTATTTATAAGATTTTATAGCAAAGATATGTTTCTAACAACTATATA
128 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATA
81545356 TCTAACCTAA
Statistics
Matches: 368, Mismatches: 26, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
214 47 0.13
215 31 0.08
216 1 0.00
217 1 0.00
218 167 0.45
219 9 0.02
220 29 0.08
221 26 0.07
222 54 0.15
223 3 0.01
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.48
Consensus pattern (217 bp):
TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCATTTTTTTGATAGTTTATCGCCTGTTATGTG
TTTTATTTTTTTTTTTCGGTTGTTTGTTTCTCTGTAATCTGTATTGAGGGACATTTTCTTGGAAA
TCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTATCTA
CCCTAAAACCCTAATGAAACAC
Found at i:81551564 original size:13 final size:14
Alignment explanation
Indices: 81551546--81551591 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
81551536 TGGAAGATGG
81551546 ATAAATAAA-AAAA
1 ATAAATAAATAAAA
*
81551559 ATAAATAAATAAAT
1 ATAAATAAATAAAA
*
81551573 ATAAATAAGATAAAG
1 ATAAATAA-ATAAAA
81551588 ATAA
1 ATAA
81551592 GGCAGGAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 9 0.31
14 11 0.38
15 9 0.31
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (14 bp):
ATAAATAAATAAAA
Found at i:81552264 original size:11 final size:11
Alignment explanation
Indices: 81552248--81552272 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81552238 GCGATTATTG
81552248 TATTTATTGTA
1 TATTTATTGTA
81552259 TATTTATTGTA
1 TATTTATTGTA
81552270 TAT
1 TAT
81552273 AAATAAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:81553038 original size:14 final size:14
Alignment explanation
Indices: 81553019--81553045 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81553009 AGATAAATAA
81553019 AATCTATATAACAT
1 AATCTATATAACAT
81553033 AATCTATATAACA
1 AATCTATATAACA
81553046 AAGTAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
AATCTATATAACAT
Done.