Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 29 of 253
Found at i:7733985 original size:21 final size:20
Alignment explanation
Indices: 7733952--7734006 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
7733942 ATTAGGTATT
*
7733952 TTTA-TTTTATTTTATTTGAA
1 TTTATTTTTGTTTTATTT-AA
*
7733972 TTTATTTTTGTTTTATTTTA
1 TTTATTTTTGTTTTATTTAA
*
7733992 TATTGTTTTTGTTTT
1 T-TTATTTTTGTTTT
7734007 TCAAGTACTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.20
21 24 0.80
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTATTTTTGTTTTATTTAA
Found at i:7733997 original size:15 final size:15
Alignment explanation
Indices: 7733951--7734000 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
7733941 GATTAGGTAT
*
7733951 TTTTATTTTATTTTA
1 TTTTATTTTATTTTG
* *
7733966 TTTGAATTTATTTTTG
1 TTTTATTTTA-TTTTG
*
7733982 TTTTATTTTATATTG
1 TTTTATTTTATTTTG
7733997 TTTT
1 TTTT
7734001 TGTTTTTCAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTATTTTATTTTG
Found at i:7736452 original size:40 final size:40
Alignment explanation
Indices: 7736383--7736484 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
7736373 ACGCCGTTAT
7736383 AGATCGAGCATTAGCGGCGTTTTTCAGAAAATACCGCTA-A
1 AGATC-AGCATTAGCGGCGTTTTTCAGAAAATACCGCTATA
*
7736423 AGATCAGCATTAGCGGCGCTTTTAT-AGAAAATGCCGCTATA
1 AGATCAGCATTAGCGGCG-TTTT-TCAGAAAATACCGCTATA
* * * *
7736464 GGTTGAGCATTAGCGGTGTTT
1 AGATCAGCATTAGCGGCGTTT
7736485 CTCCCAAAAC
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 13 0.24
40 25 0.46
41 16 0.30
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (40 bp):
AGATCAGCATTAGCGGCGTTTTTCAGAAAATACCGCTATA
Found at i:7736673 original size:115 final size:116
Alignment explanation
Indices: 7736429--7736694 Score: 304
Period size: 115 Copynumber: 2.3 Consensus size: 116
7736419 CTAAAGATCA
* * *
7736429 GCATTAGCGGCGCTTTTAT-AGAAAATGCCGCTATAGGTTGAGCATTAGCGGTGTTTCTCCCAAA
1 GCATTAGCGGCG-TTTTTTGA-AAAATGCCGCTATAGGTTCAGCATTAGCGGCGTTTCTCCCAAA
* * * *
7736493 ACACCGCAAAAAAAATTAGCAAGACGTTGTCGTTTTCATGTTGAGCATTAGTG
64 ACACCGCAAAAAAAATCAGCAAGACATCGTCGTTTTCATGTTAAGCATTAGTG
* * * **
7736546 GCATTAGCGGCGTTTTTTGAAAAATGCTGCTATCGGTTCAGCATTAGTGGCGTTTCTCGTAAAAC
1 GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATAGGTTCAGCATTAGCGGCGTTTCTCCCAAAAC
* * * *
7736611 GCTGC-AAAAGAATCAGCAAGACATCGTCGTTTTCATGTTAAGGA-TATGTG
66 ACCGCAAAAAAAATCAGCAAGACATCGTCGTTTTCATGTTAAGCATTA-GTG
* ** *
7736661 GCATTAGTGGCGTTTTTCCAAAAACGCCGCTATA
1 GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATA
7736695 AATCGAGCAT
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
114 2 0.02
115 64 0.51
116 46 0.37
117 13 0.10
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (116 bp):
GCATTAGCGGCGTTTTTTGAAAAATGCCGCTATAGGTTCAGCATTAGCGGCGTTTCTCCCAAAAC
ACCGCAAAAAAAATCAGCAAGACATCGTCGTTTTCATGTTAAGCATTAGTG
Found at i:7737147 original size:7 final size:7
Alignment explanation
Indices: 7737135--7737187 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
7737125 AGTGGGTAGA
*
7737135 GGTTAAT
1 GGTTAAG
7737142 GGTTAAG
1 GGTTAAG
*
7737149 GGTTATG
1 GGTTAAG
7737156 GGTTTAAG
1 GG-TTAAG
7737164 GGTTAAGG
1 GGTTAA-G
* *
7737172 GGATAGG
1 GGTTAAG
7737179 GGTTAAG
1 GGTTAAG
7737186 GG
1 GG
7737188 GACATGGGTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
7 26 0.70
8 11 0.30
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (7 bp):
GGTTAAG
Found at i:7737181 original size:15 final size:15
Alignment explanation
Indices: 7737163--7737202 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7737153 ATGGGTTTAA
*
7737163 GGGTTAAGGGGATAG
1 GGGTTAAGGGGACAG
*
7737178 GGGTTAAGGGGACAT
1 GGGTTAAGGGGACAG
7737193 GGGTT-AGGGG
1 GGGTTAAGGGG
7737203 TTTATGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.23, C:0.03, G:0.55, T:0.20
Consensus pattern (15 bp):
GGGTTAAGGGGACAG
Found at i:7737184 original size:22 final size:22
Alignment explanation
Indices: 7737135--7737187 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
7737125 AGTGGGTAGA
* *
7737135 GGTTAATGGTTAAGGGTTATGG
1 GGTTAAGGGTTAAGGGATATGG
*
7737157 GTTTAAGGGTTAAGGGGATA-GG
1 GGTTAAGGGTTAA-GGGATATGG
7737179 GGTTAAGGG
1 GGTTAAGGG
7737188 GACATGGGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (22 bp):
GGTTAAGGGTTAAGGGATATGG
Found at i:7737250 original size:22 final size:21
Alignment explanation
Indices: 7737225--7737272 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
7737215 GAGTTAATAT
*
7737225 TTTAAAGTTTATGAATTATGGG
1 TTTAAAGATTATGAATTAT-GG
** *
7737247 TTTAGGGATTATGATTTATGG
1 TTTAAAGATTATGAATTATGG
7737268 TTTAA
1 TTTAA
7737273 GGGTTGAGGT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (21 bp):
TTTAAAGATTATGAATTATGG
Found at i:7737285 original size:21 final size:20
Alignment explanation
Indices: 7737261--7737339 Score: 68
Period size: 21 Copynumber: 3.8 Consensus size: 20
7737251 GGGATTATGA
*
7737261 TTTATGGTTTAAGGGTTGAGG
1 TTTAAGGTTTAAGGGTT-AGG
**
7737282 TTTAAAATTTAAGGGTTAGTG
1 TTTAAGGTTTAAGGGTTAG-G
* *
7737303 GTTAAGGTTTAAGGTTTTATGG
1 TTTAAGGTTTAAGG-GTTA-GG
*
7737325 TTTAAGGGTTAAGGG
1 TTTAAGGTTTAAGGG
7737340 GATATGTGAT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
20 2 0.04
21 26 0.58
22 16 0.36
23 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (20 bp):
TTTAAGGTTTAAGGGTTAGG
Found at i:7737314 original size:7 final size:7
Alignment explanation
Indices: 7737261--7737338 Score: 50
Period size: 7 Copynumber: 11.0 Consensus size: 7
7737251 GGGATTATGA
*
7737261 TTTATGG
1 TTTAAGG
7737268 TTTAAGG
1 TTTAAGG
* *
7737275 GTTGAGG
1 TTTAAGG
**
7737282 TTTAAAA
1 TTTAAGG
7737289 TTTAAGG
1 TTTAAGG
*
7737296 GTT-AGTG
1 TTTAAG-G
*
7737303 GTTAAGG
1 TTTAAGG
7737310 TTTAAGG
1 TTTAAGG
*
7737317 TTTTATGG
1 -TTTAAGG
7737325 TTTAAGG
1 TTTAAGG
*
7737332 GTTAAGG
1 TTTAAGG
7737339 GGATATGTGA
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
6 2 0.04
7 44 0.81
8 8 0.15
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (7 bp):
TTTAAGG
Found at i:7737649 original size:21 final size:21
Alignment explanation
Indices: 7737631--7737684 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
7737621 TTAAGTTTAT
7737631 GGTTTAAGGTTTGTTGTTTTG
1 GGTTTAAGGTTTGTTGTTTTG
* ** *
7737652 GGCTTGGGGTTTGTTATTTTG
1 GGTTTAAGGTTTGTTGTTTTG
7737673 GGTTTAAGGTTT
1 GGTTTAAGGTTT
7737685 AGAGTATATA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.09, C:0.02, G:0.35, T:0.54
Consensus pattern (21 bp):
GGTTTAAGGTTTGTTGTTTTG
Found at i:7737933 original size:19 final size:18
Alignment explanation
Indices: 7737909--7737947 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
7737899 TCAATTTGTC
7737909 AATTTTGTTGAATTTTATA
1 AATTTTGTTGAATTTT-TA
7737928 AATTTTGTTGAATTTTTA
1 AATTTTGTTGAATTTTTA
7737946 AA
1 AA
7737948 AATTAATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (18 bp):
AATTTTGTTGAATTTTTA
Found at i:7738535 original size:15 final size:15
Alignment explanation
Indices: 7738495--7738536 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
7738485 ATCCCTAACA
*
7738495 TTTTCCCCAAGTAAT
1 TTTTCCCCAAATAAT
**
7738510 TTTTCTTCAAATAAT
1 TTTTCCCCAAATAAT
7738525 TTTTCCCCAAAT
1 TTTTCCCCAAAT
7738537 CAGTTCCCCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (15 bp):
TTTTCCCCAAATAAT
Found at i:7739551 original size:24 final size:23
Alignment explanation
Indices: 7739524--7739575 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
7739514 GAGTGTTAAT
* * *
7739524 ATTTTTATATCAGCCTTTGATTCA
1 ATTTTAATATCAACCATTGATT-A
*
7739548 ATTTTAATATTAACCATTGATTA
1 ATTTTAATATCAACCATTGATTA
7739571 ATTTT
1 ATTTT
7739576 GGATTGGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.52
Consensus pattern (23 bp):
ATTTTAATATCAACCATTGATTA
Found at i:7741187 original size:24 final size:24
Alignment explanation
Indices: 7741160--7741230 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
7741150 ATTATTATTG
*
7741160 AAATATTCTCGTCCGTTTTATCAA
1 AAATATTATCGTCCGTTTTATCAA
** *
7741184 AAATATTATTTTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAA
7741208 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
7741231 TTTAAGTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAA
Found at i:7741469 original size:14 final size:15
Alignment explanation
Indices: 7741415--7741469 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
7741405 AACGATATGT
7741415 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
7741431 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
7741444 ATATTATTTAATTAA
1 ATATTATTTAATTAA
7741459 ATATT-TTTAAT
1 ATATTATTTAAT
7741470 CCTGCAACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 8 0.23
15 9 0.26
16 5 0.14
17 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:7741619 original size:9 final size:9
Alignment explanation
Indices: 7741607--7741682 Score: 73
Period size: 9 Copynumber: 8.4 Consensus size: 9
7741597 ATTTGATATT
*
7741607 ATAATTTAC
1 ATAACTTAC
7741616 ATAACTTAC
1 ATAACTTAC
*
7741625 AAAACTTAC
1 ATAACTTAC
*
7741634 ATAACTTAT
1 ATAACTTAC
*
7741643 ATAACTTAG
1 ATAACTTAC
* *
7741652 ATAA-ATAT
1 ATAACTTAC
*
7741660 ATAACTTAT
1 ATAACTTAC
7741669 ATAACTTATC
1 ATAACTTA-C
7741679 ATAA
1 ATAA
7741683 TATCCCTAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
8 6 0.11
9 46 0.82
10 4 0.07
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7741662 original size:17 final size:17
Alignment explanation
Indices: 7741640--7741672 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7741630 TTACATAACT
7741640 TATATAACTTAGATAAA
1 TATATAACTTAGATAAA
*
7741657 TATATAACTTATATAA
1 TATATAACTTAGATAA
7741673 CTTATCATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (17 bp):
TATATAACTTAGATAAA
Found at i:7743492 original size:21 final size:21
Alignment explanation
Indices: 7743468--7743520 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7743458 AGGTAGCAGA
*
7743468 GAGGGAGGCAGCGGCAGCAAT
1 GAGGGAGGCAGCGGCAGCAAC
*
7743489 GAGGGAGGCAGCGGCAGCAGC
1 GAGGGAGGCAGCGGCAGCAAC
7743510 GAGGGAGGCAG
1 GAGGGAGGCAG
7743521 AGCAAAGCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.53, T:0.02
Consensus pattern (21 bp):
GAGGGAGGCAGCGGCAGCAAC
Found at i:7743805 original size:31 final size:31
Alignment explanation
Indices: 7743764--7743823 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
7743754 ATACTTTTTG
* *
7743764 TGCTAAATTTGCTGTTTTTTGTTGCATTTCA
1 TGCTAAATTTGCTATTTTTGGTTGCATTTCA
* * *
7743795 TGCTATATTTGTTATTTTTGGTTGGATTT
1 TGCTAAATTTGCTATTTTTGGTTGCATTT
7743824 AATGTAGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.15, C:0.08, G:0.18, T:0.58
Consensus pattern (31 bp):
TGCTAAATTTGCTATTTTTGGTTGCATTTCA
Found at i:7745101 original size:42 final size:42
Alignment explanation
Indices: 7745052--7745137 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
7745042 AATTTATTAA
7745052 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATTT
1 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATTT
7745094 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATTT
1 TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATTT
7745136 TT
1 TT
7745138 GATATCCTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (42 bp):
TTTAGACAATAAATCAATTCATTTCCTTCAATTTGGTCATTT
Found at i:7747081 original size:16 final size:18
Alignment explanation
Indices: 7747042--7747075 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7747032 TAGGTTTATA
7747042 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
7747059 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
7747076 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:7749912 original size:26 final size:25
Alignment explanation
Indices: 7749879--7749934 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 25
7749869 AAATAATAGT
*
7749879 ATAAATTTAGTTTAATTTTGTAAAA
1 ATAAATTTAGTTTAATTTTGAAAAA
7749904 ATAATATTTAGTTTAATTTTGAAAAA
1 ATAA-ATTTAGTTTAATTTTGAAAAA
7749930 ATAAA
1 ATAAA
7749935 ATAAAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (25 bp):
ATAAATTTAGTTTAATTTTGAAAAA
Found at i:7757595 original size:19 final size:20
Alignment explanation
Indices: 7757573--7757621 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
7757563 TGTAAATTTT
7757573 TATTA-AAATTCCTAAAAAG
1 TATTAGAAATTCCTAAAAAG
7757592 TATTAGAAA-TCCTAAAAAG
1 TATTAGAAATTCCTAAAAAG
7757611 TATTAGAAATT
1 TATTAGAAATT
7757622 AATTAAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (20 bp):
TATTAGAAATTCCTAAAAAG
Found at i:7757989 original size:21 final size:20
Alignment explanation
Indices: 7757962--7758017 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
7757952 TATGATTAAT
7757962 TAATTTCTAATATTTTTTTA
1 TAATTTCTAATATTTTTTTA
7757982 TAAATTTCTAATA-TTTTTTA
1 T-AATTTCTAATATTTTTTTA
7758002 TAATTT-TAATGATTTT
1 TAATTTCTAAT-ATTTT
7758018 AATCATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.12
19 6 0.18
20 12 0.36
21 11 0.33
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (20 bp):
TAATTTCTAATATTTTTTTA
Found at i:7758000 original size:20 final size:19
Alignment explanation
Indices: 7757962--7758017 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 19
7757952 TATGATTAAT
7757962 TAATTTCTAATATTTTTTTA
1 TAATTTCTAATA-TTTTTTA
7757982 TAAATTTCTAATATTTTTTA
1 T-AATTTCTAATATTTTTTA
7758002 TAATTT-TAATGATTTT
1 TAATTTCTAAT-ATTTT
7758018 AATCATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.12
19 10 0.29
20 9 0.26
21 11 0.32
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
TAATTTCTAATATTTTTTA
Found at i:7759701 original size:18 final size:19
Alignment explanation
Indices: 7759664--7759701 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7759654 CTAAATCGCA
*
7759664 TATAGAGTAAAAGTTCAAT
1 TATAGAGTAAAAGATCAAT
*
7759683 TATAGATTAAAA-ATCAAT
1 TATAGAGTAAAAGATCAAT
7759701 T
1 T
7759702 GAGGGATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (19 bp):
TATAGAGTAAAAGATCAAT
Found at i:7759857 original size:15 final size:15
Alignment explanation
Indices: 7759839--7759868 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7759829 ATAAAGATTA
7759839 TAATAATAATAAAAG
1 TAATAATAATAAAAG
7759854 TAATAATAATAAAAG
1 TAATAATAATAAAAG
7759869 AAAGAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
TAATAATAATAAAAG
Found at i:7759876 original size:15 final size:15
Alignment explanation
Indices: 7759843--7759894 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
7759833 AGATTATAAT
* *
7759843 AATAATAAAAGTAAT
1 AATAATAAAAGAAAG
7759858 AATAATAAAAGAAAG
1 AATAATAAAAGAAAG
*
7759873 AATAA-AGAA-AAAG
1 AATAATAAAAGAAAG
*
7759886 AATTATAAA
1 AATAATAAA
7759895 GACATGCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 8 0.26
14 5 0.16
15 18 0.58
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (15 bp):
AATAATAAAAGAAAG
Found at i:7759876 original size:18 final size:18
Alignment explanation
Indices: 7759838--7759877 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7759828 TATAAAGATT
*
7759838 ATAATAATAATAAAAGTA
1 ATAATAATAAAAAAAGTA
7759856 ATAATAATAAAAGAAAG-A
1 ATAATAATAAAA-AAAGTA
7759874 ATAA
1 ATAA
7759878 AGAAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (18 bp):
ATAATAATAAAAAAAGTA
Found at i:7767852 original size:6 final size:6
Alignment explanation
Indices: 7767837--7767877 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
7767827 TTAGCGAACT
*
7767837 AGAA-G AGAATG AGAATT AGAATTG -GAATG AGAATG AGAATG
1 AGAATG AGAATG AGAATG AGAA-TG AGAATG AGAATG AGAATG
7767878 GTTAGAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 6 0.19
6 24 0.77
7 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.32, T:0.20
Consensus pattern (6 bp):
AGAATG
Found at i:7771544 original size:30 final size:30
Alignment explanation
Indices: 7771505--7771561 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7771495 ATTAGTATCT
*
7771505 GTATCTGCATCTGTAACAGAATTTGTATAA
1 GTATCTGCATCTGCAACAGAATTTGTATAA
* *
7771535 GTATTTGCATCTGCAACTGAATTTGTA
1 GTATCTGCATCTGCAACAGAATTTGTA
7771562 ATTGATTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (30 bp):
GTATCTGCATCTGCAACAGAATTTGTATAA
Found at i:7772687 original size:19 final size:19
Alignment explanation
Indices: 7772659--7772739 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
7772649 AATCTTTAAG
*
7772659 GATATGCAATCTCAGATAT
1 GATATGCAATCTTAGATAT
*
7772678 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7772697 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7772716 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7772737 GAT
1 GAT
7772740 CTTGTAATCT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
19 48 0.84
21 9 0.16
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7774575 original size:53 final size:53
Alignment explanation
Indices: 7774434--7774584 Score: 223
Period size: 53 Copynumber: 2.8 Consensus size: 53
7774424 ATAAGTGCGC
* *
7774434 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
7774487 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
7774540 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
7774585 ACCGTGTAAG
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
52 1 0.01
53 82 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:7782046 original size:30 final size:29
Alignment explanation
Indices: 7782011--7782078 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 29
7782001 CTTCTATTTC
* *
7782011 AAAAAAAAAAGGAAAAAGAAAAGAAAAAAAT
1 AAAAAAAAAAAG-AAAA-AAGAGAAAAAAAT
7782042 AAAAAAGAAAAAGAAAAAAGAGAAAAAAAT
1 AAAAAA-AAAAAGAAAAAAGAGAAAAAAAT
7782072 AAAAAAA
1 AAAAAAA
7782079 TGGAAAGGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 1 0.03
30 18 0.53
31 10 0.29
32 5 0.15
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (29 bp):
AAAAAAAAAAAGAAAAAAGAGAAAAAAAT
Found at i:7782047 original size:15 final size:15
Alignment explanation
Indices: 7782029--7782077 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
7782019 AAGGAAAAAG
7782029 AAAAGAAAAAAATAA
1 AAAAGAAAAAAATAA
7782044 AAAAGAAAAAGAA-AA
1 AAAAGAAAAA-AATAA
*
7782059 AAGAGAAAAAAATAA
1 AAAAGAAAAAAATAA
7782074 AAAA
1 AAAA
7782078 ATGGAAAGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 2 0.07
15 26 0.87
16 2 0.07
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.04
Consensus pattern (15 bp):
AAAAGAAAAAAATAA
Found at i:7782060 original size:13 final size:13
Alignment explanation
Indices: 7782011--7782067 Score: 64
Period size: 13 Copynumber: 4.4 Consensus size: 13
7782001 CTTCTATTTC
*
7782011 AAAAA-AAAAAGG
1 AAAAAGAAAAAAG
7782023 AAAAAGAAAAGAA-
1 AAAAAGAAAA-AAG
*
7782036 AAAAATAAAAAAG
1 AAAAAGAAAAAAG
7782049 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
7782062 AGAAAA
1 A-AAAA
7782068 AAATAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
12 7 0.18
13 26 0.68
14 5 0.13
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:7782078 original size:20 final size:20
Alignment explanation
Indices: 7782011--7782078 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
7782001 CTTCTATTTC
7782011 AAAAAAAAAAG-GAAAAAGA
1 AAAAAAAAAAGAGAAAAAGA
*
7782030 AAAGAAAAAAATA-AAAAAGA
1 AAA-AAAAAAAGAGAAAAAGA
7782050 AAAAGAAAAAAGAGAAAAA-A
1 AAAA-AAAAAAGAGAAAAAGA
*
7782070 ATAAAAAAA
1 AAAAAAAAA
7782079 TGGAAAGGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 9 0.21
20 28 0.67
21 5 0.12
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAAGAGAAAAAGA
Found at i:7782079 original size:8 final size:8
Alignment explanation
Indices: 7782014--7782078 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
7782004 CTATTTCAAA
7782014 AAAAAAAG
1 AAAAAAAG
*
7782022 -GAAAAAG
1 AAAAAAAG
7782029 AAAAGAAA-
1 AAAA-AAAG
*
7782037 AAAATAAAA
1 AAAA-AAAG
7782046 AAGAAAAAG
1 AA-AAAAAG
7782055 AAAAAAGAG
1 AAAAAA-AG
*
7782064 AAAAAAAT
1 AAAAAAAG
7782072 AAAAAAA
1 AAAAAAA
7782079 TGGAAAGGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
7 6 0.13
8 21 0.45
9 18 0.38
10 2 0.04
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:7783032 original size:44 final size:44
Alignment explanation
Indices: 7782980--7783502 Score: 374
Period size: 44 Copynumber: 11.9 Consensus size: 44
7782970 CAAGATTTGG
7782980 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * * * *** *
7783024 CATTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT-GGA
1 CATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATCTGA
* * *
7783069 -ATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
** *
7783112 CATCCCTGTGTTTATAGGGAACAGATCGAAGATTTCAG--CATGG
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATC-TGA
* * * * *
7783155 CATCCCTGTGTTTATAGGGAATA-AGTTGAAGATAGCAGTTTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
* *
7783199 CATCCCTGTGTTTATAGGGAATAGATCGAAGATAACAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
* * * * * **
7783243 CA-CTCCTGTGCTTACAGCGAAGCAGATTGAGGATTTCAG--CATGA
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGA
* * *
7783287 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
* *
7783331 CATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
** * * ** *
7783375 CA-CTCCTGTACTTATAGCGAAGCAGATCGAGGATTTCAG--CATGG
1 CATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGA
* * *
7783419 CATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGG
1 CATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGA
* * * * * *
7783463 CATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACCAGAT
1 CATCCCTGTGTT-TATAGGGAACAGATCGAAGATAGCAGAT
7783503 TTGGCATCTC
Statistics
Matches: 375, Mismatches: 76, Indels: 56
0.74 0.15 0.11
Matches are distributed among these distances:
42 6 0.02
43 74 0.20
44 244 0.65
45 49 0.13
46 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
Found at i:7783269 original size:132 final size:132
Alignment explanation
Indices: 7783069--7783502 Score: 624
Period size: 132 Copynumber: 3.3 Consensus size: 132
7783059 TTAGCATGGA
* * * * * *
7783069 ATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCA-TCCCTGTGTTTATAGGGA
1 ATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAACAGATCTGACACT-CCTGTGCTTATAGCGA
* * *
7783132 A-CAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGTTT
64 AGCAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATT
7783196 TGGC
129 TGGC
* *
7783200 ATCCCTGTGTTTATAGGGAATAGATCGAAGATAACAGATCTGACACTCCTGTGCTTACAGCGAAG
1 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTTATAGCGAAG
* *
7783265 CAGATTGAGGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
66 CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
7783330 GC
131 GC
* *
7783332 ATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTACTTATAGCGAAG
1 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTTATAGCGAAG
7783397 CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
66 CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
7783462 GC
131 GC
* * * * * *
7783464 ATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACCAGAT
1 ATCCCTGTGTT-TATAGGGAACAGATCGAAGATAACAGAT
7783503 TTGGCATCTC
Statistics
Matches: 273, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
131 52 0.19
132 220 0.81
133 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (132 bp):
ATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTTATAGCGAAG
CAGATCGAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTG
GC
Found at i:7783472 original size:88 final size:87
Alignment explanation
Indices: 7782977--7783471 Score: 479
Period size: 88 Copynumber: 5.6 Consensus size: 87
7782967 AAACAAGATT
* * * * * *
7782977 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
*
7783042 GAAGCAGATCGAAGATTTTAGCA
66 GAA-CAGATCGAAGATTTCAGCA
* *
7783065 TGGAATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATTTGACATCCCTGTGTTTATAG
7783129 GGAACAGATCGAAGATTTCAGCA
65 GGAACAGATCGAAGATTTCAGCA
* * *
7783152 TGGCATCCCTGTGTTTATAGGGAATA-AGTTGAAGATAGCAGTTTTGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATTTGACATCCCTGTGTTTATAG
* **
7783216 GGAATAGATCGAAGATAACAG-A
65 GGAACAGATCGAAGATTTCAGCA
* * * * * **
7783238 TCTGACA-CTCCTGTGCTTACAGCGAAGCAGATTGAGGATTTCAGCA--TGACATCCCTGTGTTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAGATTGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* **
7783300 ATAGGGAACA-AGTTGAAGATAGCAG-A
61 ATAGGGAACAGA-TCGAAGATTTCAGCA
* * * * **
7783326 TTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACA-CTCCTGTACTTAT
1 --TGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATTTGACATC-CCTGTGTTTAT
* *
7783390 AGCGAAGCAGATCGAGGATTTCAGCA
63 AGGGAA-CAGATCGAAGATTTCAGCA
* *
7783416 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCTCTGT
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATTTGACATCCCTGT
7783472 ATTGTCAGAG
Statistics
Matches: 339, Mismatches: 51, Indels: 34
0.80 0.12 0.08
Matches are distributed among these distances:
86 2 0.01
87 115 0.34
88 195 0.58
89 24 0.07
90 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
GAACAGATCGAAGATTTCAGCA
Found at i:7783488 original size:219 final size:220
Alignment explanation
Indices: 7782977--7783468 Score: 674
Period size: 219 Copynumber: 2.2 Consensus size: 220
7782967 AAACAAGATT
7782977 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACAT-TCCTGTGCTTACAG
1 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATCTCCTGTGCTTACAG
*
7783041 CGAAGCAGATCGAAGATTTTAGCATGGAATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
66 CGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* ** * **
7783106 ATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATA
131 ATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGCATGACATCCCTGTACTTATA
* * * **
7783171 GGGAATAAGTTGAAGATAGCAGTTT
196 GCGAAGAAGTCGAAGATAGCAGTCA
* *
7783196 TGGCATCCCTGTGTTTATAGGGAATAGATCGAAGATAACAGATCTGACA-CTCCTGTGCTTACAG
1 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATCTCCTGTGCTTACAG
* *
7783260 CGAAGCAGATTGAGGATTTCAGCAT-GACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
66 CGAAGCAGATCGAAGATTTCAGCATGGA-ATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
7783324 GATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAG-ATCTGACA-CTCCTGTACT
130 GATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGCA--TGACATC-CCTGTACT
* * **
7783387 TATAGCGAAGCAGATCGAGGATTTCAG-CA
192 TATAGCGAAGAAG-TCGAAGATAGCAGTCA
* * *
7783416 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCATCTC
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATCTGACATCTC
7783469 TGTATTGTCA
Statistics
Matches: 240, Mismatches: 25, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
218 3 0.01
219 163 0.68
220 62 0.26
221 12 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (220 bp):
TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATCTCCTGTGCTTACAG
CGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
ATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGCATGACATCCCTGTACTTATA
GCGAAGAAGTCGAAGATAGCAGTCA
Found at i:7783503 original size:44 final size:44
Alignment explanation
Indices: 7783446--7783538 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
7783436 GGAACAAGTT
* *
7783446 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
*
7783490 GAAGATACCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
*
7783534 AAAGA
1 GAAGA
7783539 CATAGCTGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
Found at i:7783854 original size:205 final size:205
Alignment explanation
Indices: 7783525--7784239 Score: 1200
Period size: 205 Copynumber: 3.5 Consensus size: 205
7783515 TATTGGCGGA
* * * *
7783525 GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
7783590 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGA
* *
7783655 CACATAGCAGATCCAACTTTTAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
7783720 TGCTTACAAG
196 TGCTTACAAG
* * *
7783730 GAGTAAATCGAAGACATAGCTGATTTGGCTTTCACATGGTTACGTTGAAACAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
* *
7783795 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTGCACTTTGACGGAGGGCAGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGA
7783860 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
7783925 TGCTTACAAG
196 TGCTTACAAG
* *
7783935 GAGCAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
* * *
7784000 TTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGACAGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGA
*
7784065 CATC-TAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATTCTT
131 CA-CATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTT
7784129 GTGCTTACAAG
195 GTGCTTACAAG
* * *
7784140 GAGCAAGTCGAAGACATAGTTGATTTGGCTTTCACGTGCTTACGTT-AAAGCAAATCTAAGAGGA
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAA-CAAATCTAAGATGA
* *
7784204 TTTGGCATCTCTGTATTGTCAGGGAACAAATTGAAG
65 TTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
7784240 AAGCAGATTT
Statistics
Matches: 481, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
204 2 0.00
205 478 0.99
206 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCAGA
CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
TGCTTACAAG
Found at i:7784388 original size:45 final size:45
Alignment explanation
Indices: 7784312--7784418 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
7784302 TGAGTTTGCA
* *
7784312 AGGAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACG
1 AGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
*
7784356 GGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
1 AGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
* *
7784401 ATGAGCAGATCAAAGATA
1 AGGAGCAGATCGAAGATA
7784419 GAAGATATCG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
44 14 0.25
45 42 0.75
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (45 bp):
AGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACG
Found at i:7784803 original size:19 final size:19
Alignment explanation
Indices: 7784779--7784876 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
7784769 AATCTTTAAG
7784779 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7784798 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7784817 GATA--CAATCATAGATAT
1 GATATGCAATCTTAGATAT
7784834 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7784853 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7784874 GAT
1 GAT
7784877 CTTTTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7784809 original size:36 final size:35
Alignment explanation
Indices: 7784769--7784876 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
7784759 ATGGAAATAT
7784769 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
7784805 AATC-TT-AGATATGATACAATCATAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
7784841 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
7784877 CTTTTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:7785416 original size:21 final size:23
Alignment explanation
Indices: 7785365--7785417 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 23
7785355 TGTATGTCAT
* *
7785365 TTATCTTATATGTGTATAGTTTCA
1 TTAT-TTATATGTCTATAGTTTAA
*
7785389 TTTTTTATATG-CTAT-GTTTAA
1 TTATTTATATGTCTATAGTTTAA
7785410 TTATTTAT
1 TTATTTAT
7785418 TTTATGTGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 12 0.48
22 3 0.12
23 7 0.28
24 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.09, T:0.60
Consensus pattern (23 bp):
TTATTTATATGTCTATAGTTTAA
Found at i:7785444 original size:26 final size:26
Alignment explanation
Indices: 7785391--7785444 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
7785381 TAGTTTCATT
* *
7785391 TTTTATATGCTATGTTTAATTATTTA
1 TTTTATATGCTATGTTTAAATATATA
*
7785417 TTTTATGTGCTAT-TTTATAATATATA
1 TTTTATATGCTATGTTTA-AATATATA
7785443 TT
1 TT
7785445 GTTGTATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (26 bp):
TTTTATATGCTATGTTTAAATATATA
Found at i:7793796 original size:15 final size:16
Alignment explanation
Indices: 7793770--7793799 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7793760 TTTGCCCGGG
7793770 CTAAAAAGCCCAACAT
1 CTAAAAAGCCCAACAT
7793786 CTAAAAA-CCCAACA
1 CTAAAAAGCCCAACA
7793800 GCCCAAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.33, G:0.03, T:0.10
Consensus pattern (16 bp):
CTAAAAAGCCCAACAT
Found at i:7795089 original size:12 final size:11
Alignment explanation
Indices: 7795052--7795119 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 11
7795042 TTATGTACAC
7795052 ATTATTTATATT
1 ATTA-TTATATT
* *
7795064 ATTTTTACTACT
1 ATTATTA-TATT
7795076 ATTATTATATCT
1 ATTATTATAT-T
7795088 ATTATTAGTATT
1 ATTATTA-TATT
*
7795100 AGTATTATAATT
1 ATTATTAT-ATT
*
7795112 ACTATTAT
1 ATTATTAT
7795120 TACACTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 6 0.13
12 37 0.80
13 3 0.07
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTATTATATT
Found at i:7795318 original size:11 final size:11
Alignment explanation
Indices: 7795302--7795350 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
7795292 TATTTAAAAC
7795302 TATATTATGTA
1 TATATTATGTA
*
7795313 TATATTATATA
1 TATATTATGTA
7795324 TAT-TTAT-TA
1 TATATTATGTA
*
7795333 TATTTTTATGTA
1 TA-TATTATGTA
7795345 TATATT
1 TATATT
7795351 TTTAATATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 4 0.12
10 5 0.15
11 20 0.61
12 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (11 bp):
TATATTATGTA
Found at i:7795366 original size:25 final size:25
Alignment explanation
Indices: 7795338--7795422 Score: 69
Period size: 25 Copynumber: 3.6 Consensus size: 25
7795328 TATTATATTT
7795338 TTATGTATATATTTTTAATATCATA
1 TTATGTATATATTTTTAATATCATA
7795363 TTAT-TCATATA--TTT--T-T-ATA
1 TTATGT-ATATATTTTTAATATCATA
* * *
7795382 TTATGTAAATATTTTCAATA-CTACA
1 TTATGTATATATTTTTAATATC-ATA
7795407 TTATGTATATATTTTT
1 TTATGTATATATTTTT
7795423 GTCTATATTG
Statistics
Matches: 46, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
19 11 0.24
20 2 0.04
21 3 0.07
23 4 0.09
24 1 0.02
25 25 0.54
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAATATCATA
Found at i:7795380 original size:14 final size:13
Alignment explanation
Indices: 7795315--7795380 Score: 52
Period size: 14 Copynumber: 5.2 Consensus size: 13
7795305 ATTATGTATA
*
7795315 TATTATATATATT
1 TATTATATATTTT
7795328 TA-T-TATATTTT
1 TATTATATATTTT
7795339 TATGTATATATTTT
1 TAT-TATATATTTT
*
7795353 TA--ATATCA-TAT
1 TATTATAT-ATTTT
7795364 TATTCATATATTTT
1 TATT-ATATATTTT
7795378 TAT
1 TAT
7795381 ATTATGTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 15
0.70 0.05 0.25
Matches are distributed among these distances:
11 17 0.40
12 2 0.05
13 4 0.10
14 19 0.45
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (13 bp):
TATTATATATTTT
Found at i:7795394 original size:44 final size:44
Alignment explanation
Indices: 7795320--7795422 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 44
7795310 GTATATATTA
* * *
7795320 TATATATTTATTATATTTTTATGTATATATTTTTAATA-TCATATTAT-
1 TATATATTT-TTATA---TTATGTAAATATTTTCAATACT-ACATTATG
7795367 TCATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
1 T-ATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
7795412 TATATATTTTT
1 TATATATTTTT
7795423 GTCTATATTG
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
44 34 0.68
45 2 0.04
47 6 0.12
48 8 0.16
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (44 bp):
TATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
Found at i:7795690 original size:11 final size:11
Alignment explanation
Indices: 7795605--7795698 Score: 52
Period size: 11 Copynumber: 8.4 Consensus size: 11
7795595 TTACTATTAT
*
7795605 TATTATATATA
1 TATTATGTATA
*
7795616 TATATATATATA
1 TAT-TATGTATA
*
7795628 TATGTGTGTATA
1 TAT-TATGTATA
7795640 T-TTCATGTA-A
1 TATT-ATGTATA
*
7795650 TATTTATGTTTCA
1 TA-TTATGTAT-A
*
7795663 TTATTAT-T-TC
1 -TATTATGTATA
*
7795673 TAGTATGTATA
1 TATTATGTATA
7795684 TATTATGTATA
1 TATTATGTATA
7795695 TATT
1 TATT
7795699 TTTAATACTA
Statistics
Matches: 65, Mismatches: 9, Indels: 18
0.71 0.10 0.20
Matches are distributed among these distances:
9 5 0.08
10 4 0.06
11 28 0.43
12 21 0.32
13 5 0.08
14 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.55
Consensus pattern (11 bp):
TATTATGTATA
Found at i:7795725 original size:26 final size:26
Alignment explanation
Indices: 7795695--7795746 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7795685 ATTATGTATA
*
7795695 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
7795721 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
7795747 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:7797990 original size:17 final size:18
Alignment explanation
Indices: 7797951--7797990 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
7797941 TCAATTGCTA
*
7797951 AATAGAACAAATTGTCAT
1 AATAAAACAAATTGTCAT
*
7797969 AATAAAACAAATT-TCTT
1 AATAAAACAAATTGTCAT
7797986 AATAA
1 AATAA
7797991 CGCAGATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAAAACAAATTGTCAT
Found at i:7798404 original size:5 final size:5
Alignment explanation
Indices: 7798389--7798447 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
7798379 ATTCATCCCA
*
7798389 TGCATT TGCAT TGCAT TGCA- T-CATT TACAT TGCAT TGCA- T-CAT GTGCAT
1 TGCA-T TGCAT TGCAT TGCAT TGCA-T TGCAT TGCAT TGCAT TGCAT -TGCAT
7798438 TGCAT TGCAT
1 TGCAT TGCAT
7798448 CATTTGCATC
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
3 4 0.09
4 2 0.04
5 31 0.67
6 9 0.20
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (5 bp):
TGCAT
Found at i:7798413 original size:19 final size:19
Alignment explanation
Indices: 7798391--7798456 Score: 114
Period size: 19 Copynumber: 3.5 Consensus size: 19
7798381 TCATCCCATG
7798391 CATTTGCATTGCATTGCAT
1 CATTTGCATTGCATTGCAT
*
7798410 CATTTACATTGCATTGCAT
1 CATTTGCATTGCATTGCAT
*
7798429 CATGTGCATTGCATTGCAT
1 CATTTGCATTGCATTGCAT
7798448 CATTTGCAT
1 CATTTGCAT
7798457 CAGATTTTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (19 bp):
CATTTGCATTGCATTGCAT
Found at i:7802537 original size:47 final size:47
Alignment explanation
Indices: 7802484--7802714 Score: 129
Period size: 47 Copynumber: 5.2 Consensus size: 47
7802474 ATATCCAAGA
*
7802484 TGATTTGGCATCTCTGTATCAGGCGGGGAGAAGATCGAAGACATAGC
1 TGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGC
* * * * * *
7802531 TGATTTGGCTTTCACGTGT-TTA--CGTTGAAGCAGATC-----CA-AGA
1 TGATTTGGC-ATCTC-TGTATCAGGCG-GGGAGCAGATCGAAGACATAGC
*
7802572 TGATTTGGCATCTCAGTATCAGGCGGGGAGCAGATCGAAGACATAGC
1 TGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGC
* * * * ** * *
7802619 TGATTTGGCTTTCACGTGT-TTATG-TTGAAGCAGATC-----CA-AGA
1 TGATTTGGC-ATCTC-TGTATCAGGCGGGGAGCAGATCGAAGACATAGC
* *
7802660 TGATTTGGCAT-TCTGTATCAGGCGGGGAGTAGATCAAAGACATAGC
1 TGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGC
7802706 TGATTTGGC
1 TGATTTGGC
7802715 TTTCATGTGT
Statistics
Matches: 130, Mismatches: 32, Indels: 45
0.63 0.15 0.22
Matches are distributed among these distances:
38 3 0.02
39 6 0.05
40 14 0.11
41 31 0.24
42 6 0.05
45 2 0.02
46 15 0.12
47 37 0.28
48 11 0.08
49 5 0.04
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (47 bp):
TGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGC
Found at i:7802737 original size:87 final size:88
Alignment explanation
Indices: 7802476--7802786 Score: 509
Period size: 88 Copynumber: 3.6 Consensus size: 88
7802466 AGCTGAAGAT
*
7802476 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGAAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
7802541 TTCACGTGTTTACGTTGAAGCAG
66 TTCACGTGTTTACGTTGAAGCAG
*
7802564 ATCCAAGATGATTTGGCATCTCAGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
*
7802629 TTCACGTGTTTATGTTGAAGCAG
66 TTCACGTGTTTACGTTGAAGCAG
* *
7802652 ATCCAAGATGATTTGGCAT-TCTGTATCAGGCGGGGAGTAGATCAAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
* * *
7802716 TTCATGTGTTTACGTTAAAGCAA
66 TTCACGTGTTTACGTTGAAGCAG
* * *
7802739 ATACAAGATGATTTGGCATCTCTGTAGC-GGCGGAGAGCAGATCGAAGA
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGA
7802787 TAACAGATTT
Statistics
Matches: 207, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
87 96 0.46
88 111 0.54
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
TTCACGTGTTTACGTTGAAGCAG
Found at i:7802807 original size:44 final size:44
Alignment explanation
Indices: 7802748--7803870 Score: 1428
Period size: 44 Copynumber: 25.8 Consensus size: 44
7802738 AATACAAGAT
*
7802748 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
7802792 GATTTGACGTTTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
7802836 GATTTAGCGTATCTGTAGCGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
7802880 GA--T---ATCTCTGTAGCGGAAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* **
7802919 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAATG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * * **
7802963 GATTTGGTGTCTCTGTATTGTCAGAGGGCAGATCGAAGATAATG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * * *
7803007 GATTTGGCGTATCTGTATTGTCAGAGGGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
7803051 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
7803095 GATTTGGCGTCTTTGTAGCGGTAGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
7803139 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
7803179 GATTTGGCATCTCTGTAGCGGCGGAGAACAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * * *
7803223 AATTTGGCATTTCTGTAGCGACGGAGAGCAGATCAAAGAAAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
7803267 GATTTGGCGTCTTTGTAGCGGCGGAGAACAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
7803311 GATTTGGAGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *** * *
7803355 GATTTGGCGTCTCTATATTGTTAGAGGGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
7803399 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
7803443 GATTTGGCGTCTCTGTAGCGGTAGAGAGCAGATCGAATATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
7803487 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
7803531 GATTTGGAGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * * *
7803575 GATTTGGCATCTCTGTATTGTCAGAGGGTC-GATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAG-CAGATCGAAGATAACA
7803619 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
7803663 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
7803707 GATTTGGCGTCACTGTAGCGGCGGAGAGAAGATTGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
7803751 GATTTAGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
7803791 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
7803835 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
7803871 GGCGTCTCCG
Statistics
Matches: 934, Mismatches: 130, Indels: 30
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.04
40 74 0.08
41 1 0.00
42 1 0.00
43 1 0.00
44 823 0.88
45 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:7802902 original size:39 final size:41
Alignment explanation
Indices: 7802756--7804085 Score: 521
Period size: 44 Copynumber: 31.0 Consensus size: 41
7802746 ATGATTTGGC
* *
7802756 ATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
1 ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TTG
* * *
7802798 ACGTTTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTAG
1 A--TCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7802843 CGTATCTGTAGCGGCGGAGAGCAGATCGAAGATAATAGA-T-
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGATTG
* *
7802883 ATCTCTGTAGCGGAAGAGAGCAGATCGAAGATAACAGATTTGG
1 ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7802926 CGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAATGGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* ** * * *
7802970 TGTCTCTGTATTGTCA-GAGGGCAGATCGAAGATAATGGATTTGG
1 -ATCTCTGTAGCG-GAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * ** * * * *
7803014 CGTATCTGTATTGTCA-GAGGGCAGATCAAAGATAACAGATTTGG
1 -ATCTCTGTAGCG-GAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7803058 TGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * *
7803102 CGTCTTTGTAGCGGTA-GAGAGCAAATCGAAGATAACAGATTTGG
1 -ATCTCTGTAGCGG-AGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * *
7803146 CGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATGAT---TTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGATT-G
* * * *
7803186 CATCTCTGTAGCGGCGGAGAACAGATCGAAGATAACAAATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * *
7803230 CATTTCTGTAGC-GACGGAGAGCAGATCAAAGAAAACAGATTTGG
1 -ATCTCTGTAGCGGA-GGAGAGCAGATCGAAGATAATAGA-TT-G
* * * * * *
7803274 CGTCTTTGTAGCGGCGGAGAACAGATCAAAGATAACAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* **
7803318 AGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACGGATTTGG
1 A-TCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * ** * * * *
7803362 CGTCTCTATATTGTTA-GAGGGCAGATCAAAGATAACAGATTTGG
1 -ATCTCTGTAGCG-GAGGAGAGCAGATCGAAGATAATAGA-TT-G
* *
7803406 TGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7803450 CGTCTCTGTAGCGGTA-GAGAGCAGATCGAATATAACAGATTTGG
1 -ATCTCTGTAGCGG-AGGAGAGCAGATCGAAGATAATAGA-TT-G
* *
7803494 CGTCTCTGTAGCGGCA-GAGAGCAGATCGAAGATAACAGATTTGG
1 -ATCTCTGTAGCGG-AGGAGAGCAGATCGAAGATAATAGA-TT-G
* * **
7803538 AGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACGGATTTGG
1 A-TCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * *
7803582 CATCTCTGTATTGTCAGAGG-G-TC-GATCAAAGATAACAGATTTGG
1 -ATCTCTGTA--G-CGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7803626 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7803670 CGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * * * *
7803714 CGTCACTGTAGCGGCGGAGAGAAGATTGAAGATAACAGATTTAG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * *
7803758 CGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATGAT---TTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGATT-G
* *
7803798 CATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7803842 CGTCTCTATAGCGGCA-GAGAGCAGATCG-AG------G--CG
1 -ATCTCTGTAGCGG-AGGAGAGCAGATCGAAGATAATAGATTG
* * * * *
7803875 -TCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGG
1 ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * * *
7803917 CATCGCTGCAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * *
7803961 CGTCTCTGTAGCGGCA-GAGAGCAGATTGAAGATGAT---TTGG
1 -ATCTCTGTAGCGG-AGGAGAGCAGATCGAAGATAATAGATT-G
* * *
7804001 CGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAATAGATTTGG
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGA-TT-G
* * * *
7804045 CGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACAGATT
1 -ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGATT
7804086 TGGCGTCTCT
Statistics
Matches: 1082, Mismatches: 148, Indels: 115
0.80 0.11 0.09
Matches are distributed among these distances:
31 20 0.02
32 2 0.00
33 1 0.00
37 1 0.00
38 1 0.00
39 33 0.03
40 105 0.10
41 5 0.00
42 5 0.00
43 6 0.01
44 893 0.83
45 4 0.00
46 2 0.00
47 4 0.00
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.23
Consensus pattern (41 bp):
ATCTCTGTAGCGGAGGAGAGCAGATCGAAGATAATAGATTG
Found at i:7803077 original size:132 final size:132
Alignment explanation
Indices: 7802748--7804128 Score: 1656
Period size: 132 Copynumber: 10.7 Consensus size: 132
7802738 AATACAAGAT
* * *
7802748 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGACGTTTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * *
7802813 CGGAGAGCAGATCGAAGATAACAGATTTAGCGTATCTGTAGCGGCGGAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
*
7802878 TA
131 CA
* **
7802880 GA--T---ATCTCTGTAGCGGAAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* ** * ** * *
7802940 TGGAGAGCAGATCGAAGATAATGGATTTGGTGTCTCTGTATTGTCAGAGGGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
**
7803005 TG
131 CA
* ** * * * * *
7803007 GATTTGGCGTATCTGTATTGTCAGAGGGCAGATCAAAGATAACAGATTTGGTGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * *
7803072 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTTTGTAGCGGTAGAGAGCAAATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
7803137 CA
131 CA
* *
7803139 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * * * * * *
7803200 CGGAGAACAGATCGAAGATAACAAATTTGGCATTTCTGTAGCGACGGAGAGCAGATCAAAGAAAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
7803265 CA
131 CA
* * * *
7803267 GATTTGGCGTCTTTGTAGCGGCGGAGAACAGATCAAAGATAACAGATTTGGAGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * ** ** * *
7803332 CGGAGAGCAGATCGAAGATAACGGATTTGGCGTCTCTATATTGTTAGAGGGCAGATCAAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
7803397 CA
131 CA
* *
7803399 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
** *
7803464 TAGAGAGCAGATCGAATATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
7803529 CA
131 CA
* * * * ** *
7803531 GATTTGGAGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACGGATTTGGCATCTCTGTATTGT
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * *
7803596 CAGAGGGTC-GATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATA
66 CGGAGAG-CAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATA
7803660 ACA
130 ACA
* *
7803663 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCACTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * * *
7803728 CGGAGAGAAGATTGAAGATAACAGATTTAGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGAT--
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
7803791 --
131 CA
* *
7803791 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* *
7803856 C--AGAG-AG--C--AGAT--C-GA---GGCGTCTCCGTAGCGGC-GAAGAGCAGATCAAAGATA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAG-AGAGCAGATCGAAGATA
7803907 ACA
130 ACA
* * * *
7803910 GATTTGGCATCGCTGCAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * *
7803975 CAGAGAGCAGATTGAAGAT----GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
*
7804036 TA
131 CA
* **
7804038 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * * *
7804103 CAGAGAGCAAATTGAAAATAACAGAT
66 CGGAGAGCAGATCGAAGATAACAGAT
7804129 CGGTGTTCCT
Statistics
Matches: 1071, Mismatches: 147, Indels: 62
0.84 0.11 0.05
Matches are distributed among these distances:
114 1 0.00
115 31 0.03
118 2 0.00
119 63 0.06
121 8 0.01
122 2 0.00
125 4 0.00
126 8 0.01
127 110 0.10
128 283 0.26
129 2 0.00
130 1 0.00
132 555 0.52
133 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (132 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAA
CA
Found at i:7803875 original size:31 final size:31
Alignment explanation
Indices: 7803840--7803899 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
7803830 TAACAGATTT
*
7803840 GGCGTCTCTATAGCGGC-AGAGAGCAGATCGA
1 GGCGTCTCCATAGCGGCGA-AGAGCAGATCGA
*
7803871 GGCGTCTCCGTAGCGGCGAAGAGCAGATC
1 GGCGTCTCCATAGCGGCGAAGAGCAGATC
7803900 AAAGATAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.23, C:0.25, G:0.37, T:0.15
Consensus pattern (31 bp):
GGCGTCTCCATAGCGGCGAAGAGCAGATCGA
Found at i:7803930 original size:75 final size:75
Alignment explanation
Indices: 7803800--7803943 Score: 216
Period size: 75 Copynumber: 1.9 Consensus size: 75
7803790 TGATTTGGCA
* * * * * *
7803800 TCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAGCA
1 TCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCGCTACAGCGGCAGAGAGCA
7803865 GATCGAGGCG
66 GATCGAGGCG
* *
7803875 TCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCGCTGCAGCGGCGGAGAGCA
1 TCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCGCTACAGCGGCAGAGAGCA
7803940 GATC
66 GATC
7803944 AAAGATAACA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 61 1.00
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.17
Consensus pattern (75 bp):
TCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCGCTACAGCGGCAGAGAGCA
GATCGAGGCG
Found at i:7804001 original size:159 final size:156
Alignment explanation
Indices: 7803712--7804027 Score: 427
Period size: 159 Copynumber: 2.0 Consensus size: 156
7803702 TAACAGATTT
* * ** * * *
7803712 GGCGTCACTGTAGCGGCGGAGAGAAGATTGAAGATAACAGATTTAGCGTCTCTGTAGCGGCGGAG
1 GGCGTCACCGTAGCGGCGAAGAGAAGATCAAAGATAACAGATTTAGCATCGCTGCAGCGGCGGAG
*
7803777 AGCAGATCAAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
66 AGCAGATCAAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGAT---AGATTTGG
7803842 CGTCTCTATAGCGGCAGAGAGCAGATCGA
128 CGTCTCTATAGCGGCAGAGAGCAGATCGA
* * *
7803871 GGCGTCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCGCTGCAGCGGCGGAG
1 GGCGTCACCGTAGCGGCGAAGAGAAGATCAAAGATAACAGATTTAGCATCGCTGCAGCGGCGGAG
* *
7803936 AGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATTGAAGAT-GATTTG
66 AGCAGATCAAAGAT----GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGATTTG
* *
7804000 GCGTCTCTGTAGCGGCGGAGAGCAGATC
127 GCGTCTCTATAGCGGCAGAGAGCAGATC
7804028 AAAGATAATA
Statistics
Matches: 138, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
159 101 0.73
163 37 0.27
ACGTcount: A:0.28, C:0.19, G:0.34, T:0.20
Consensus pattern (156 bp):
GGCGTCACCGTAGCGGCGAAGAGAAGATCAAAGATAACAGATTTAGCATCGCTGCAGCGGCGGAG
AGCAGATCAAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAGATTTGGCGT
CTCTATAGCGGCAGAGAGCAGATCGA
Found at i:7804017 original size:203 final size:203
Alignment explanation
Indices: 7803668--7804073 Score: 632
Period size: 203 Copynumber: 2.0 Consensus size: 203
7803658 TAACAGATTT
* * * * * *
7803668 GGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCACTGTAGCGGCGGAG
1 GGCGTCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCACTGCAGCGGCGGAG
** *
7803733 AGAAGATTGAAGATAACAGATTTAGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATGATTTGG
66 AGAAGATCAAAGATAACAGATTTAGCGTCTCTGTAGCGGCAGAGAGCAGATCAAAGATGATTTGG
*
7803798 CATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAG
131 CATCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAG
*
7803863 CAGATCGA
196 CAAATCGA
*
7803871 GGCGTCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCGCTGCAGCGGCGGAG
1 GGCGTCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCACTGCAGCGGCGGAG
* * **
7803936 AGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATTGAAGATGATTTGG
66 AGAAGATCAAAGATAACAGATTTAGCGTCTCTGTAGCGGCAGAGAGCAGATCAAAGATGATTTGG
* * * *
7804001 CGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAATAGATTTGGCGTCTCTGTAGCGGCGGAGAG
131 CATCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAG
7804066 CAAATCGA
196 CAAATCGA
7804074 AGATAACAGA
Statistics
Matches: 183, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
203 183 1.00
ACGTcount: A:0.29, C:0.18, G:0.33, T:0.20
Consensus pattern (203 bp):
GGCGTCTCCGTAGCGGCGAAGAGCAGATCAAAGATAACAGATTTGGCATCACTGCAGCGGCGGAG
AGAAGATCAAAGATAACAGATTTAGCGTCTCTGTAGCGGCAGAGAGCAGATCAAAGATGATTTGG
CATCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTATAGCGGCAGAGAG
CAAATCGA
Found at i:7804109 original size:44 final size:44
Alignment explanation
Indices: 7803994--7804128 Score: 198
Period size: 44 Copynumber: 3.1 Consensus size: 44
7803984 GATTGAAGAT
* * *
7803994 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
7804038 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
** * * *
7804082 GATTTGGCGTCTCTGTATTGGCAGAGAGCAAATTGAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
7804126 GAT
1 GAT
7804129 CGGTGTTCCT
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 83 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAAATCGAAGATAACA
Found at i:7805906 original size:9 final size:9
Alignment explanation
Indices: 7805894--7805930 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7805884 CTATATTATG
7805894 TATATATTT
1 TATATATTT
*
7805903 TATATATAT
1 TATATATTT
*
7805912 TATATATTA
1 TATATATTT
7805921 TATATATTT
1 TATATATTT
7805930 T
1 T
7805931 TATGTATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TATATATTT
Found at i:7805906 original size:18 final size:18
Alignment explanation
Indices: 7805885--7805944 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 18
7805875 TTTTTAAAAC
7805885 TATATTATGTATATATTT
1 TATATTATGTATATATTT
7805903 TATATATAT-TATATATTAT
1 TATAT-TATGTATATATT-T
7805922 ATATATTTTTATGTATATATTT
1 -TATA---TTATGTATATATTT
7805944 T
1 T
7805945 TAATATCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
18 13 0.37
19 4 0.11
20 4 0.11
21 1 0.03
22 4 0.11
23 9 0.26
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TATATTATGTATATATTT
Found at i:7805921 original size:16 final size:16
Alignment explanation
Indices: 7805885--7805967 Score: 61
Period size: 16 Copynumber: 5.4 Consensus size: 16
7805875 TTTTTAAAAC
*
7805885 TATATTATGTATA-TA
1 TATATTATATATATTA
7805900 T-T-TTATATATATTA
1 TATATTATATATATTA
7805914 TATATTATATATATT-
1 TATATTATATATATTA
* *
7805929 TTTATGTATATAT-TTT
1 TATAT-TATATATATTA
*
7805945 TAATATCATAT-TATTCA
1 T-ATATTATATATATT-A
7805962 TATATT
1 TATATT
7805968 TTTTATTATG
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 8 0.15
14 4 0.07
15 9 0.17
16 29 0.54
17 4 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (16 bp):
TATATTATATATATTA
Found at i:7805934 original size:41 final size:40
Alignment explanation
Indices: 7805889--7805973 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 40
7805879 TAAAACTATA
*
7805889 TTATGTATATATTTTATATATATTATA-TATT-ATATATATTT
1 TTATGTATATATTTT-TA-ATATCATATTATTCATATAT-TTT
7805930 TTATGTATATATTTTTAATATCATATTATTCATATATTTT
1 TTATGTATATATTTTTAATATCATATTATTCATATATTTT
7805970 TTAT
1 TTAT
7805974 TATGTAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
39 7 0.17
40 13 0.32
41 21 0.51
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (40 bp):
TTATGTATATATTTTTAATATCATATTATTCATATATTTT
Found at i:7805955 original size:14 final size:14
Alignment explanation
Indices: 7805889--7805966 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 14
7805879 TAAAACTATA
*
7805889 TTATGTATATA-TT
1 TTATATATATATTT
*
7805902 TTATATATAT-TAT
1 TTATATATATATTT
*
7805915 ATATTATATATATTT
1 TTA-TATATATATTT
*
7805930 TTATGTATATATTT
1 TTATATATATATTT
7805944 TTA-ATATCATATTAT
1 TTATATAT-ATATT-T
*
7805959 TCATATAT
1 TTATATAT
7805967 TTTTTATTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 15 0.29
14 25 0.49
15 7 0.14
16 4 0.08
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (14 bp):
TTATATATATATTT
Found at i:7805977 original size:43 final size:42
Alignment explanation
Indices: 7805887--7806013 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 42
7805877 TTTAAAACTA
* *
7805887 TATTATGTATATATTTTATATATATTATA-TATTATATA-TATT
1 TATTATGTATATATTTT-TA-ATATCATATTATTATATATTTTT
7805929 T-TTATGTATATATTTTTAATATCATATTATTCATATATTTTT
1 TATTATGTATATATTTTTAATATCATATTATT-ATATATTTTT
* * *
7805971 TATTATGTAAATATTTTCAATA-CTACATTATGTATATATTTTT
1 TATTATGTATATATTTTTAATATC-ATATTAT-TATATATTTTT
7806014 GTCTATATTG
Statistics
Matches: 74, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
39 7 0.09
40 6 0.08
41 20 0.27
42 6 0.08
43 34 0.46
44 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (42 bp):
TATTATGTATATATTTTTAATATCATATTATTATATATTTTT
Found at i:7806295 original size:26 final size:26
Alignment explanation
Indices: 7806265--7806316 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7806255 ATTATGTATA
*
7806265 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
7806291 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
7806317 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:7807317 original size:131 final size:132
Alignment explanation
Indices: 7807139--7807381 Score: 326
Period size: 132 Copynumber: 1.8 Consensus size: 132
7807129 AACGAAAGAG
* * * * * *
7807139 ATGTTCGATATTTAGCAATTCATGGAATCGTGCCCTAACGTGTTGGGTTGC-AATTTCTCGTTTG
1 ATGTTCGATATTTAGCAATTCAGGGAATAGTACCCTAACGTGCTGGGTTGCAAATCTCCCGTTTG
* ** *
7807203 CTCAAAATAATCGAATGTCTTTTTAGAATTTCATTCATGTTTTCTAAAAAAAAAACTTATAAAGG
66 CTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTTCTAAAAAAAAAACTTATAAAGG
7807268 AA
131 AA
* * * *
7807270 ATGTTCGGTATTTAGCAGTTCGGGGAATAGTACCCTATCGTGCTGGGTTGCAAATCTCCCGTTTG
1 ATGTTCGATATTTAGCAATTCAGGGAATAGTACCCTAACGTGCTGGGTTGCAAATCTCCCGTTTG
* * *
7807335 TTCAAAATAATCGAATATCCCTTTGGAATTTCACTCGTGTTTTCTAA
66 CTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTTCTAA
7807382 GGCGAGGCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
131 43 0.46
132 51 0.54
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (132 bp):
ATGTTCGATATTTAGCAATTCAGGGAATAGTACCCTAACGTGCTGGGTTGCAAATCTCCCGTTTG
CTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTTCTAAAAAAAAAACTTATAAAGG
AA
Found at i:7808153 original size:21 final size:21
Alignment explanation
Indices: 7808129--7808171 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
7808119 TAGCCATTTC
7808129 TTATTTTCAATT-TAATTTTTT
1 TTATTTT-AATTATAATTTTTT
7808150 TTATTTTAATTACTAATTTTTT
1 TTATTTTAATTA-TAATTTTTT
7808172 CTTTTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 7 0.35
22 9 0.45
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTATTTTAATTATAATTTTTT
Found at i:7808169 original size:20 final size:20
Alignment explanation
Indices: 7808146--7808183 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7808136 CAATTTAATT
7808146 TTTTTTATTTTAATTACTAA
1 TTTTTTATTTTAATTACTAA
* *
7808166 TTTTTTCTTTTATTTACT
1 TTTTTTATTTTAATTACT
7808184 TCTAGCAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTTTATTTTAATTACTAA
Found at i:7809136 original size:46 final size:46
Alignment explanation
Indices: 7809044--7809269 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
7809034 TTTGACATGA
* * * * * *
7809044 TGCCATAGTGTCTTT-AACTATGGT-TTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** *
7809088 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
7809134 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
7809180 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7809226 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7809270 AGAGCACACT
Statistics
Matches: 165, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
44 13 0.08
45 12 0.07
46 140 0.85
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:7817342 original size:3 final size:3
Alignment explanation
Indices: 7817334--7817376 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
7817324 TATTTTAATC
7817334 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACTT -TT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT A
7817377 CTCTTATTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7818980 original size:6 final size:6
Alignment explanation
Indices: 7818966--7818998 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7818956 TATTTTTCAC
*
7818966 TTTAAT TTTATT TTTA-T TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA
7818999 GGTTTGCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:7818986 original size:11 final size:11
Alignment explanation
Indices: 7818970--7818996 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7818960 TTTCACTTTA
7818970 ATTTTATTTTT
1 ATTTTATTTTT
7818981 ATTTTATTTTT
1 ATTTTATTTTT
7818992 ATTTT
1 ATTTT
7818997 TAGGTTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:7818997 original size:17 final size:17
Alignment explanation
Indices: 7818954--7818998 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7818944 TTTGAGTCCA
7818954 TTTATTTTTCACTTTAAT
1 TTTATTTTT-ACTTTAAT
* *
7818972 TTTATTTTTATTTTATT
1 TTTATTTTTACTTTAAT
7818989 TTTATTTTTA
1 TTTATTTTTA
7818999 GGTTTGCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTTTACTTTAAT
Found at i:7820844 original size:24 final size:24
Alignment explanation
Indices: 7820817--7820862 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
7820807 TCTAGGGAAC
7820817 AATCATTTATAAAATGCGCTAAAA
1 AATCATTTATAAAATGCGCTAAAA
7820841 AATCATTTATAAAATGCGCTAA
1 AATCATTTATAAAATGCGCTAA
7820863 GCATGGGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (24 bp):
AATCATTTATAAAATGCGCTAAAA
Found at i:7822459 original size:7 final size:6
Alignment explanation
Indices: 7822428--7822505 Score: 68
Period size: 6 Copynumber: 13.0 Consensus size: 6
7822418 AAGTGAAATT
* * * * *
7822428 AATAAA AACTTAA AAT-AA AATAAA AATGAA AATAAA GATAAA AGTAGA
1 AATAAA AA-TAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * *
7822476 AATAAA AACAAA AATAAA GATAAA ATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
7822506 TTAAACATCA
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
5 5 0.09
6 46 0.82
7 5 0.09
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:7822494 original size:30 final size:28
Alignment explanation
Indices: 7822438--7822506 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 28
7822428 AATAAAAACT
**
7822438 TAAAATAAAATAAAAATGAAAATAAAGA
1 TAAAATAAAATAAAAACAAAAATAAAGA
7822466 TAAAAGTAGAAATAAAAACAAAAATAAAGA
1 TAAAA-TA-AAATAAAAACAAAAATAAAGA
*
7822496 TAAAATTAAAT
1 TAAAATAAAAT
7822507 TAAACATCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 9 0.25
29 3 0.08
30 24 0.67
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.19
Consensus pattern (28 bp):
TAAAATAAAATAAAAACAAAAATAAAGA
Found at i:7830046 original size:26 final size:26
Alignment explanation
Indices: 7830017--7830122 Score: 169
Period size: 26 Copynumber: 4.1 Consensus size: 26
7830007 TGGTACAAAT
*
7830017 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
7830043 TGATAATGGATT-GGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7830068 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7830094 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7830120 TGA
1 TGA
7830123 CGGGCATTTC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7830072 original size:51 final size:52
Alignment explanation
Indices: 7830017--7830122 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 52
7830007 TGGTACAAAT
*
7830017 TGATAATGGGTTAGGTAAATGTTCCGTGATAATGGATT-GGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
7830068 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
7830120 TGA
1 TGA
7830123 CGGGCATTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 36 0.71
52 15 0.29
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:7831782 original size:54 final size:54
Alignment explanation
Indices: 7831700--7831861 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
7831690 TGGAGGAAGC
7831700 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
7831754 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* * * * *
7831808 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTTATCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTACCACATATATCT
7831861 G
1 G
7831862 ACAGCCTCGC
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 13 0.13
54 87 0.87
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:7831854 original size:27 final size:27
Alignment explanation
Indices: 7831703--7831861 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
7831693 AGGAAGCGTC
*
7831703 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
7831730 CTGGTGGCTCTACCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
7831757 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
7831784 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
7831811 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* * **
7831838 CTGGTGACTTTATCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
7831862 ACAGCCTCGC
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 9 0.08
27 103 0.90
28 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:7831855 original size:81 final size:80
Alignment explanation
Indices: 7831703--7831862 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
7831693 AGGAAGCGTC
*
7831703 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
*
7831768 GCCACAATTATCTGAT
66 ACCACAA-TATCTGAT
* * * *
7831784 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTACCACATATATCTGT-CCTGGTGACT
* *
7831847 TTATCACAATATCTGA
64 ATACCACAATATCTGA
7831863 CAGCCTCGCT
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
80 17 0.25
81 52 0.75
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
ACCACAATATCTGAT
Found at i:7834429 original size:4 final size:4
Alignment explanation
Indices: 7834420--7834447 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
7834410 TCAATACAAA
7834420 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
7834448 TTTTCCTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:7837850 original size:12 final size:12
Alignment explanation
Indices: 7837833--7837893 Score: 61
Period size: 12 Copynumber: 5.1 Consensus size: 12
7837823 TGTATCAAAG
7837833 GAGGTACAACAA
1 GAGGTACAACAA
*
7837845 GAGGTACAATAA
1 GAGGTACAACAA
* *
7837857 -AGGGTACAATAG
1 GA-GGTACAACAA
*
7837869 GATGTACAACAA
1 GAGGTACAACAA
*
7837881 GAGGTACATCAA
1 GAGGTACAACAA
7837893 G
1 G
7837894 CTGTAAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
11 1 0.03
12 38 0.95
13 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.26, T:0.15
Consensus pattern (12 bp):
GAGGTACAACAA
Found at i:7837904 original size:36 final size:36
Alignment explanation
Indices: 7837831--7837909 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 36
7837821 TATGTATCAA
*
7837831 AGGAGGTACAACAAGAGGTACAATAAAGGGTACAAT
1 AGGAGGTACAACAAGAGGTACAATAAAGGGTAAAAT
* * *
7837867 AGGATGTACAACAAGAGGTAC-ATCAAGCTGTAAAAT
1 AGGAGGTACAACAAGAGGTACAATAAAG-GGTAAAAT
7837903 AGGAGGT
1 AGGAGGT
7837910 GGTGGTCGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 5 0.14
36 32 0.86
ACGTcount: A:0.44, C:0.11, G:0.28, T:0.16
Consensus pattern (36 bp):
AGGAGGTACAACAAGAGGTACAATAAAGGGTAAAAT
Found at i:7850383 original size:35 final size:35
Alignment explanation
Indices: 7850328--7850397 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
7850318 TTATTTATTT
* **
7850328 TAAATAGAAAATTCTCTTTAAATGTATAAAAATGA
1 TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
7850363 TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
1 TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
7850398 ATAAGGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (35 bp):
TAAACAGAAAATTCAATTTAAATGTATAAAAATGA
Found at i:7858824 original size:24 final size:24
Alignment explanation
Indices: 7858774--7858825 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7858764 AATAAATTTC
* * *
7858774 AAAACATCAATAATGTTAATATGA
1 AAAACATCAAGAACGTAAATATGA
7858798 AAAACATCACAGAACGTAAATAT-A
1 AAAACATCA-AGAACGTAAATATGA
7858822 AAAA
1 AAAA
7858826 TTTTGTTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.21
Consensus pattern (24 bp):
AAAACATCAAGAACGTAAATATGA
Found at i:7858825 original size:25 final size:24
Alignment explanation
Indices: 7858774--7858825 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
7858764 AATAAATTTC
* * * *
7858774 AAAACATCAATAATGTTAATATGA
1 AAAACATCAAGAACGTAAATATAA
7858798 AAAACATCACAGAACGTAAATATAA
1 AAAACATCA-AGAACGTAAATATAA
7858823 AAA
1 AAA
7858826 TTTTGTTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.21
Consensus pattern (24 bp):
AAAACATCAAGAACGTAAATATAA
Found at i:7860547 original size:27 final size:27
Alignment explanation
Indices: 7860517--7860574 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7860507 TTTCTCTTAC
* * *
7860517 TTATCTATTTTTTAATTTTTTCTATTT
1 TTATCTAATTTTTAAATTTATCTATTT
* *
7860544 TTATTTAATTTTTAAATTTATGTATTT
1 TTATCTAATTTTTAAATTTATCTATTT
7860571 TTAT
1 TTAT
7860575 GATTTTCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (27 bp):
TTATCTAATTTTTAAATTTATCTATTT
Found at i:7861227 original size:14 final size:13
Alignment explanation
Indices: 7861208--7861241 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
7861198 CATATGTTTT
7861208 TATATTAATATTAA
1 TATATTAATA-TAA
7861222 TATATTAATATAA
1 TATATTAATATAA
7861235 -ATATTAA
1 TATATTAA
7861242 AATGCATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
13 3 0.15
14 10 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TATATTAATATAA
Found at i:7862215 original size:26 final size:26
Alignment explanation
Indices: 7862178--7862235 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
7862168 TGATACAAAT
7862178 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7862204 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7862230 TGATAA
1 TGATAA
7862236 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7865856 original size:68 final size:69
Alignment explanation
Indices: 7865775--7865906 Score: 162
Period size: 69 Copynumber: 1.9 Consensus size: 69
7865765 ATAAAATAAC
* *
7865775 AAAATAAAATATT-ATAACAATTA-ATTTTATAAAATATTAAAACAATAAAATAAATTTAT-TAT
1 AAAATAAAATATTAATAA-AATTACATTTTAAAAAATAATAAAACAATAAAA-AAATTTATATAT
7865837 TGTTTA
64 TGTTTA
* * * * *
7865843 AAAATAATATATTAATAATATTACTTTTTAAAAAATAATAAAATAATAAAAATATTTATATATT
1 AAAATAAAATATTAATAAAATTACATTTTAAAAAATAATAAAACAATAAAAAAATTTATATATT
7865907 AATGTATATA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
68 23 0.43
69 31 0.57
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (69 bp):
AAAATAAAATATTAATAAAATTACATTTTAAAAAATAATAAAACAATAAAAAAATTTATATATTG
TTTA
Found at i:7865968 original size:20 final size:20
Alignment explanation
Indices: 7865945--7865984 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7865935 AATATGTTTT
*
7865945 TATATTAATATTAATATTAA
1 TATATTAATATAAATATTAA
*
7865965 TATATTAATGTAAATATTAA
1 TATATTAATATAAATATTAA
7865985 AATGCAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TATATTAATATAAATATTAA
Found at i:7874461 original size:18 final size:17
Alignment explanation
Indices: 7874438--7874483 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 17
7874428 ATATATAAGC
7874438 ATGTATACTGAACTATAT
1 ATGTAT-CTGAACTATAT
7874456 ATGTATCTTGAACTATAT
1 ATGTATC-TGAACTATAT
7874474 ATGTATCTGA
1 ATGTATCTGA
7874484 TAAACCTGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (17 bp):
ATGTATCTGAACTATAT
Found at i:7874827 original size:46 final size:41
Alignment explanation
Indices: 7874736--7874815 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
7874726 TGTTACTGAA
7874736 TACTGCATATTTGATACTGATACTATGATAGGCTAAGGCCC
1 TACTGCATATTTGATACTGATACTATGATAGGCTAAGGCCC
*
7874777 TACTGCATATTTGATACTG-TACTGA-GATGGGCTAAGGCC
1 TACTGCATATTTGATACTGATACT-ATGATAGGCTAAGGCC
7874816 AAACCGTTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
40 17 0.46
41 20 0.54
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (41 bp):
TACTGCATATTTGATACTGATACTATGATAGGCTAAGGCCC
Found at i:7876676 original size:13 final size:13
Alignment explanation
Indices: 7876658--7876721 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
7876648 TTTAACAATG
7876658 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
* *
7876671 CTTTTGAAAGGTG
1 CTTTTGAAAAGTA
* * * *
7876684 CTGTGGAAAATTG
1 CTTTTGAAAAGTA
* *
7876697 TTTTTGAGAAGTA
1 CTTTTGAAAAGTA
7876710 CTTTTGAAAAGT
1 CTTTTGAAAAGT
7876722 TTGGTTTAAG
Statistics
Matches: 37, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:7879240 original size:20 final size:20
Alignment explanation
Indices: 7879215--7879263 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
7879205 TATAGTGATT
7879215 TTTATTATTTTAATTTAATA
1 TTTATTATTTTAATTTAATA
7879235 TTTATTATTTTAATTTAATA
1 TTTATTATTTTAATTTAATA
*
7879255 TTTAATATT
1 TTTATTATT
7879264 ATTATTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTATTATTTTAATTTAATA
Found at i:7879265 original size:26 final size:26
Alignment explanation
Indices: 7879216--7879297 Score: 98
Period size: 26 Copynumber: 3.2 Consensus size: 26
7879206 ATAGTGATTT
*
7879216 TTATTATTTTA-ATTTAATATTTATTA
1 TTATTATTTAATATTTAATA-TTATTA
7879242 TT-TTAATTTAATATTTAATATTATTA
1 TTATT-ATTTAATATTTAATATTATTA
**
7879268 TTATTATTTGTTATTTAATA-TATTA
1 TTATTATTTAATATTTAATATTATTA
7879293 TTATT
1 TTATT
7879298 GTATTTTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
25 12 0.24
26 28 0.56
27 10 0.20
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (26 bp):
TTATTATTTAATATTTAATATTATTA
Found at i:7879307 original size:26 final size:26
Alignment explanation
Indices: 7879219--7879330 Score: 90
Period size: 26 Copynumber: 4.2 Consensus size: 26
7879209 GTGATTTTTA
*
7879219 TTATTT-TAATTTAATAT-TTATTATT
1 TTATTTATTATTTAATATATTATTA-T
*
7879244 TTAATTTAATATTTAATATTATTATTA-
1 TT-ATTTATTATTTAATA-TATTATTAT
*
7879271 TTATTTGTTATTTAATATATTATTAT
1 TTATTTATTATTTAATATATTATTAT
7879297 TGTATTT-TTA-TTACCATCATATTATTAT
1 T-TATTTATTATTTA--AT-ATATTATTAT
7879325 ATTATT
1 -TTATT
7879331 ACACCTTTTA
Statistics
Matches: 73, Mismatches: 4, Indels: 17
0.78 0.04 0.18
Matches are distributed among these distances:
25 13 0.18
26 21 0.29
27 17 0.23
28 15 0.21
29 7 0.10
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (26 bp):
TTATTTATTATTTAATATATTATTAT
Found at i:7879308 original size:33 final size:32
Alignment explanation
Indices: 7879223--7879308 Score: 86
Period size: 33 Copynumber: 2.7 Consensus size: 32
7879213 TTTTTATTAT
*
7879223 TTTAAT-TTAATATTTATTATTTTAATTTAATA
1 TTTAATATTAGTATTT-TTATTTTAATTTAATA
* * *
7879255 TTTAATATTATTATTATTATTTGTTATTTAATA
1 TTTAATATTAGTATTTTTATTT-TAATTTAATA
*
7879288 TATTATTATT-GTATTTTTATT
1 T-TTAATATTAGTATTTTTATT
7879309 ACCATCATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 12 0.27
33 26 0.58
34 7 0.16
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (32 bp):
TTTAATATTAGTATTTTTATTTTAATTTAATA
Found at i:7879377 original size:23 final size:23
Alignment explanation
Indices: 7879336--7879384 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
7879326 TTATTACACC
*
7879336 TTTTACTATTATTACTATTGTAT
1 TTTTACTATTATTACTATTATAT
**
7879359 TTTTACTATTATTGTTATTATAT
1 TTTTACTATTATTACTATTATAT
7879382 TTT
1 TTT
7879385 CCTCTTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTACTATTATTACTATTATAT
Found at i:7879608 original size:22 final size:22
Alignment explanation
Indices: 7879583--7879628 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7879573 TTACTATTTG
7879583 TATTTACCA-TTATTATTACTAT
1 TATTT-CCATTTATTATTACTAT
* *
7879605 TATTTTCATTTTTTATTACTAT
1 TATTTCCATTTATTATTACTAT
7879627 TA
1 TA
7879629 CTAATATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTTCCATTTATTATTACTAT
Found at i:7881254 original size:57 final size:56
Alignment explanation
Indices: 7881142--7881254 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 56
7881132 CTTTACAAGT
*
7881142 CCTTCCAAAAGATAACAAAGTCTTTGCCATTTTCCCAGCGAACAGAGAGTCTCCCC
1 CCTTCCAAAAGATAACAAAGTCTTTGCCATTTTCCCAGCGAACAGAGACTCTCCCC
*
7881198 CCTTCCAAAAGATAACAAAGTCTTTGCCCATTTTCCCAGCGAATAGAGACTCTCCCC
1 CCTTCCAAAAGATAACAAAGTCTTTG-CCATTTTCCCAGCGAACAGAGACTCTCCCC
7881255 AGCGTTAGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
56 26 0.48
57 28 0.52
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (56 bp):
CCTTCCAAAAGATAACAAAGTCTTTGCCATTTTCCCAGCGAACAGAGACTCTCCCC
Found at i:7882705 original size:13 final size:13
Alignment explanation
Indices: 7882687--7882712 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7882677 TGGGCCACCC
7882687 CAAAACCCAATAA
1 CAAAACCCAATAA
7882700 CAAAACCCAATAA
1 CAAAACCCAATAA
7882713 ACCAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACCCAATAA
Found at i:7883934 original size:26 final size:27
Alignment explanation
Indices: 7883900--7883963 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
7883890 CCTATTACTT
7883900 TATTCTTATTTTA-TTTTTATATCATTA
1 TATT-TTATTTTACTTTTTATATCATTA
* *
7883927 TATTTTA-TCTACTTTTTATATTATTA
1 TATTTTATTTTACTTTTTATATCATTA
*
7883953 TA-TATATTTTA
1 TATTTTATTTTA
7883964 GTCTTACTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 6 0.19
26 21 0.68
27 4 0.13
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (27 bp):
TATTTTATTTTACTTTTTATATCATTA
Found at i:7887919 original size:14 final size:15
Alignment explanation
Indices: 7887895--7887924 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7887885 CATTTGACAT
7887895 TCATGCATTCATTCA
1 TCATGCATTCATTCA
7887910 TCAT-CATTCATTCA
1 TCATGCATTCATTCA
7887924 T
1 T
7887925 TGCATATCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.27, C:0.27, G:0.03, T:0.43
Consensus pattern (15 bp):
TCATGCATTCATTCA
Found at i:7896188 original size:20 final size:22
Alignment explanation
Indices: 7896151--7896193 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
7896141 TCATTATAGG
7896151 ATATATAAACATAGTATTAAGA
1 ATATATAAACATAGTATTAAGA
*
7896173 ATATAT-AATATA-TATTAAGA
1 ATATATAAACATAGTATTAAGA
7896193 A
1 A
7896194 ACATGTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 5 0.25
22 6 0.30
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (22 bp):
ATATATAAACATAGTATTAAGA
Found at i:7900989 original size:25 final size:24
Alignment explanation
Indices: 7900933--7901025 Score: 82
Period size: 25 Copynumber: 3.7 Consensus size: 24
7900923 AACAAGGTGT
7900933 AAATAATATAATAATATGATGGTAATAA
1 AAATAATATAATAATAT-A---TAATAA
7900961 AAATACA-ATAATAATATATAATAA
1 AAATA-ATATAATAATATATAATAA
* *
7900985 CAAATAATATAATAATATTTAATTTA
1 -AAATAATATAATAATATATAA-TAA
*
7901011 AATTAA-ATAATAATA
1 AAATAATATAATAATA
7901026 ATTAAATTAA
Statistics
Matches: 58, Mismatches: 3, Indels: 12
0.79 0.04 0.16
Matches are distributed among these distances:
24 16 0.28
25 23 0.40
26 2 0.03
27 1 0.02
28 15 0.26
29 1 0.02
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (24 bp):
AAATAATATAATAATATATAATAA
Done.