Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 30 of 253
Found at i:7901042 original size:25 final size:24
Alignment explanation
Indices: 7900958--7901042 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 24
7900948 ATGATGGTAA
7900958 TAAAAATACAATAATAATA-TATAA-
1 TAAAAATA-AATAATAATATTA-AAT
*
7900982 TAACAAATAATATAATAATATTTAAT
1 TAA-AAATAA-ATAATAATATTAAAT
* *
7901008 TTAAATTAAATAATAATAATTAAAT
1 TAAAAATAAATAATAAT-ATTAAAT
7901033 TAAAAATAAA
1 TAAAAATAAA
7901043 AATCACTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
24 12 0.24
25 35 0.70
26 3 0.06
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (24 bp):
TAAAAATAAATAATAATATTAAAT
Found at i:7911148 original size:27 final size:28
Alignment explanation
Indices: 7911118--7911172 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
7911108 CACCGCTGAA
7911118 TCGG-GGAATTCAAGCAC-TAGCAACCCC
1 TCGGCGGAATTC-AGCACATAGCAACCCC
7911145 TCGGCGGAATTCAGCACATAGCAACCCC
1 TCGGCGGAATTCAGCACATAGCAACCCC
7911173 CTTTCACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.29, C:0.35, G:0.22, T:0.15
Consensus pattern (28 bp):
TCGGCGGAATTCAGCACATAGCAACCCC
Found at i:7911276 original size:26 final size:30
Alignment explanation
Indices: 7911228--7911283 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 30
7911218 CCAATGAAAC
7911228 CGGGGAATTCAGGCACACTTAG-CAACCCCT
1 CGGGGAATTCAGGCACAC-TAGCCAACCCCT
7911258 CGGGGAA-TCA-GCACA-TAGCCAACCCC
1 CGGGGAATTCAGGCACACTAGCCAACCCC
7911284 CTTTTCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 3 0.12
27 7 0.28
28 5 0.20
29 3 0.12
30 7 0.28
ACGTcount: A:0.29, C:0.36, G:0.23, T:0.12
Consensus pattern (30 bp):
CGGGGAATTCAGGCACACTAGCCAACCCCT
Found at i:7911343 original size:110 final size:108
Alignment explanation
Indices: 7911086--7911346 Score: 322
Period size: 109 Copynumber: 2.4 Consensus size: 108
7911076 AACCGTTATT
* *
7911086 TGGTGGATCTCGCACTTAGCACCACC-GCTGAATCGGGGAATTCAAGCACTAGCAACCCCTCGGC
1 TGGTGGATCACGCAC-TAGCACCACCAGATGAATCGGGGAATTCAAGCACTAGCAACCCCTCGGC
7911150 GGAATTCAGCACATAGCAACCCCCTTTCACATTTTTCCAAAGATA
65 GGAATTCAGCACATAGCAACCCCCTTTCACA-TTTTCCAAAGATA
* * *
7911195 TGGTGGAT-ATCGCACTACCACCACCA-ATGAAACCGGGGAATTCAGGCACACTTAGCAACCCCT
1 TGGTGGATCA-CGCACTAGCACCACCAGATG-AATCGGGGAATTCAAG--CAC-TAGCAACCCCT
7911258 CGG-GGAA-TCAGCACATAGCCAACCCCCTTTTCACA-TTT-CAAA-ATTA
61 CGGCGGAATTCAGCACATAG-CAACCCCC-TTTCACATTTTCCAAAGA-TA
7911304 TGGTGGATCACGCACATAGCACCACCAGATGAATCGGGGAATT
1 TGGTGGATCACGCAC-TAGCACCACCAGATGAATCGGGGAATT
7911347 TTAAAGCAAC
Statistics
Matches: 133, Mismatches: 7, Indels: 23
0.82 0.04 0.14
Matches are distributed among these distances:
108 12 0.09
109 46 0.35
110 36 0.27
111 18 0.14
112 21 0.16
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (108 bp):
TGGTGGATCACGCACTAGCACCACCAGATGAATCGGGGAATTCAAGCACTAGCAACCCCTCGGCG
GAATTCAGCACATAGCAACCCCCTTTCACATTTTCCAAAGATA
Found at i:7921086 original size:26 final size:26
Alignment explanation
Indices: 7921051--7921102 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
7921041 ATGTGAAAAG
*
7921051 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
7921077 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
7921103 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:7921179 original size:104 final size:105
Alignment explanation
Indices: 7920972--7921341 Score: 633
Period size: 103 Copynumber: 3.6 Consensus size: 105
7920962 TTGTATATAA
** *
7920972 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
7921037 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
7921076 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCT-AGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
7921140 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
7921180 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
7921244 TTGAAATGTG-AAA-GGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
7921283 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
7921342 ATAACGGTTA
Statistics
Matches: 254, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
103 135 0.53
104 89 0.35
105 29 0.11
106 1 0.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:7921298 original size:27 final size:27
Alignment explanation
Indices: 7921256--7921307 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7921246 GAAATGTGAA
*
7921256 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
7921283 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
7921308 GATTCAGCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:7922872 original size:162 final size:163
Alignment explanation
Indices: 7922549--7922885 Score: 408
Period size: 162 Copynumber: 2.1 Consensus size: 163
7922539 GTTACACCAT
* * * * * * *
7922549 ATACGTAAGCCTCCAAAGTTTATGGGAAGTAAAAGTTGAATAATGCGATAATTTAAAGTATCTTT
1 ATACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTAAAAAATGCGATAAATTAAAATATCTCT
* * * * * ** *
7922614 TTCCACTGTTTGTTGCTAAATAGTCTTGGACAATTGCATACTTTGAAGATAAAAAGTTGCTCTCA
66 TCCCACTATCTGCTACTAAATACCCTTGGACAATTGCATACTTTGAAAATAAAAAGTTGCTCTCA
*
7922679 ATTAGAAAACATAATCCAAGACCCGCAAGTGCC
131 ATTAGAAAACATAATCCAAGACCCACAAGTGCC
* *
7922712 ATACATAAGCCTCCAAAGTTTAAGGGAAGTAAAGGTTAAAAAATGTGATAAATTAAAATATCTCT
1 ATACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTAAAAAATGCGATAAATTAAAATATCTCT
* *
7922777 TCCCACTATCTGCTACT-AATACCCTTGGGCAATTGCATACTTTGAAAATAAAGAGTTGCT-TGC
66 TCCCACTATCTGCTACTAAATACCCTTGGACAATTGCATACTTTGAAAATAAAAAGTTGCTCT-C
* * ** * *
7922840 AATTGGAAGATGTAATCTAAGACCTACAAGTGCC
130 AATTAGAAAACATAATCCAAGACCCACAAGTGCC
*
7922874 ATACATATGCCT
1 ATACATAAGCCT
7922886 ACTCCAAAGT
Statistics
Matches: 146, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
161 1 0.01
162 77 0.53
163 68 0.47
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (163 bp):
ATACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTAAAAAATGCGATAAATTAAAATATCTCT
TCCCACTATCTGCTACTAAATACCCTTGGACAATTGCATACTTTGAAAATAAAAAGTTGCTCTCA
ATTAGAAAACATAATCCAAGACCCACAAGTGCC
Found at i:7924296 original size:148 final size:148
Alignment explanation
Indices: 7924028--7924314 Score: 468
Period size: 148 Copynumber: 1.9 Consensus size: 148
7924018 TGCGCTCAAT
*
7924028 TTACAAACGCTAAAGATAGAGAGGTGCTTTGGATTGGAAGAAATAATCCAAGACATTCAAATATC
1 TTACAAACGCTAAAGATAGAGAGGTGCTTTGGATTGAAAGAAATAATCCAAGACATTCAAATATC
* *
7924093 AATCATAAACTTTCAATGCTTAAGGGAAGTACAAGTTACAGAATGCAATAATTTGAAATATCTCT
66 AAACATAAACTTTCAATGCCTAAGGGAAGTACAAGTTACAGAATGCAATAATTTGAAATATCTCT
*
7924158 TTCCAATGTCTTTGGCAA
131 TCCCAATGTCTTTGGCAA
* * *
7924176 TTACAAACTCTGAAGATAGAGAGGTGCTTTGGATTGAAAGAAATAATCCAAGAC-TCTCAAGTAT
1 TTACAAACGCTAAAGATAGAGAGGTGCTTTGGATTGAAAGAAATAATCCAAGACAT-TCAAATAT
* **
7924240 CAAACATAAGCTTTCAATGCCTAAGGGAAGTACAAGTTACAGGCTGCAATAATTTGAAATATCTC
65 CAAACATAAACTTTCAATGCCTAAGGGAAGTACAAGTTACAGAATGCAATAATTTGAAATATCTC
7924305 TTCCCAATGT
130 TTCCCAATGT
7924315 GTGTTGTTAA
Statistics
Matches: 128, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
147 1 0.01
148 127 0.99
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.28
Consensus pattern (148 bp):
TTACAAACGCTAAAGATAGAGAGGTGCTTTGGATTGAAAGAAATAATCCAAGACATTCAAATATC
AAACATAAACTTTCAATGCCTAAGGGAAGTACAAGTTACAGAATGCAATAATTTGAAATATCTCT
TCCCAATGTCTTTGGCAA
Found at i:7926277 original size:67 final size:65
Alignment explanation
Indices: 7926170--7926300 Score: 144
Period size: 67 Copynumber: 2.0 Consensus size: 65
7926160 TTAAAATTTT
* **
7926170 AAATTAATAAAAATAAAAATATATTTTTTTTATTTTTAAAATAATTA-AATTTTAA-TTTAATCC
1 AAATTAATAAAAATAAAAATATATTTTTATTATTCAT-AAA-AATTATAA-TTTAATTTTAA-CC
7926233 TTTA
62 TTTA
*
7926237 AAATTTATAAAAATATAAAAT-TATATTTTATTA-TCATAAAAATTATAATTTAATTTTAACCTT
1 AAATTAATAAAAATA-AAAATATAT-TTTTATTATTCATAAAAATTATAATTTAATTTTAACCTT
7926300 T
64 T
7926301 TAAAGAATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
65 15 0.27
66 10 0.18
67 19 0.34
68 12 0.21
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (65 bp):
AAATTAATAAAAATAAAAATATATTTTTATTATTCATAAAAATTATAATTTAATTTTAACCTTTA
Found at i:7932027 original size:162 final size:164
Alignment explanation
Indices: 7931767--7932073 Score: 356
Period size: 162 Copynumber: 1.9 Consensus size: 164
7931757 GAGAGATGCA
*
7931767 ATAATTTGAAATATATCTTCCCAATGTCAGTTGATAATAGCCTTATGCAATTACATACTTTGAAG
1 ATAATTTGAAATATATCTTCCCAATGTCAGTTGATAATAGCCTTAGGCAATTACATACTTTGAAG
* * * * *
7931832 ATAAAGAGTTGCAGGAGCTTAGAAGGCATAATCCAATACTCACAAGTCCCATACATAAG-C-CTC
66 ATAAAGAGTTGCAGCAGATTAGAAGACATAATCCAAGACCCACAAGTCCCATACATAAGTCACTC
*
7931895 CAAAGTTTAAGGGAAATAGAAGTTGAAAATTGCG
131 CAAAGTCTAAGGGAAATAGAAGTTGAAAATTGCG
* * * * * *
7931929 ATAATTT-AAAGTATCTCTTTCCATTGTCGGTTGCA-AATAGCCTT-GGCCAATTGCATATTTTG
1 ATAATTTGAAA-TATATCTTCCCAATGTCAGTTG-ATAATAGCCTTAGG-CAATTACATACTTTG
* * * ** *
7931991 AAGATAAAGAGTTGCTCGCA-ATTGGAAGATATAATCCAAGACCCACAAGTGGCATACATATGTC
63 AAGATAAAGAGTTGC-AGCAGATTAGAAGACATAATCCAAGACCCACAAGTCCCATACATAAGTC
7932055 TACTCCAAAGTCTAAGGGA
127 -ACTCCAAAGTCTAAGGGA
7932074 GGTATGTGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
161 4 0.03
162 95 0.80
163 4 0.03
165 16 0.13
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (164 bp):
ATAATTTGAAATATATCTTCCCAATGTCAGTTGATAATAGCCTTAGGCAATTACATACTTTGAAG
ATAAAGAGTTGCAGCAGATTAGAAGACATAATCCAAGACCCACAAGTCCCATACATAAGTCACTC
CAAAGTCTAAGGGAAATAGAAGTTGAAAATTGCG
Found at i:7933262 original size:18 final size:18
Alignment explanation
Indices: 7933239--7933275 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7933229 CAAGGTAGCT
*
7933239 CTAAAAAATTAAATGCGC
1 CTAAAAAACTAAATGCGC
7933257 CTAAAAAACTAAATGCGC
1 CTAAAAAACTAAATGCGC
7933275 C
1 C
7933276 CAATTTGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.22, G:0.11, T:0.19
Consensus pattern (18 bp):
CTAAAAAACTAAATGCGC
Found at i:7933475 original size:162 final size:162
Alignment explanation
Indices: 7933280--7933950 Score: 1018
Period size: 162 Copynumber: 4.1 Consensus size: 162
7933270 TGCGCCCAAT
* * *
7933280 TTGCAAACTTTGAACATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAAGACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * * *
7933345 AACGATAAGCTTTCAATGTCTAAGGGAAGTACAAGTCACAGAGTGCAATAAATTGAAATTTCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
7933410 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
*
7933442 TTGCAAACTCTAAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * * * * * * *
7933507 AACCGTAAGCTTTCAATGTCTTAGGAAAGTACAAGTCAAAGAATGCGATAAATTGATATTTCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
7933572 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
*
7933604 TTGCAAACTCTAAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * ** *
7933669 AACCACAAACTTCCAATGCCTTACGGAAGTACAAGTCATTGAATGCAATAATTTGAAATTTCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
*
7933734 TCCCAATGTGTGTTGCTAATAGTATTGGGAAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
* * *
7933766 TTGCAAACTCTGAAGATAGAGTGGTGCTTTAGAATTGAAGAAATAATCCAACACTCACAAGTATC
1 TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
* * * *
7933831 AACCATAAAATTCCAATGCCTAAGGGAAGTACAAGTCACGGAATGCAATAATTTGAAATATCTCT
66 AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
* *
7933896 TCCCAATGTGTGTTGCTAATAGTCTTGAGCAA
131 TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
*
7933928 TTGCAAATTCTGAAGATAGAGAG
1 TTGCAAACTCTGAAGATAGAGAG
7933951 CTGTTCCCAA
Statistics
Matches: 468, Mismatches: 41, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
162 468 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (162 bp):
TTGCAAACTCTGAAGATAGAGAGGTGCTTTGGAATGGAAGAAATAATCCAACACTCACAAGTATC
AACCATAAACTTCCAATGCCTAAGGGAAGTACAAGTCACAGAATGCAATAAATTGAAATTTCTCT
TCCCAATGTGTGTTGCTAATAGTCTTGGGAAA
Found at i:7935997 original size:24 final size:24
Alignment explanation
Indices: 7935965--7936055 Score: 101
Period size: 24 Copynumber: 3.5 Consensus size: 24
7935955 GACCAAAGAG
7935965 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
7935989 GAAGATGAAAGTGATGAAGTGATTTTGAATAT
1 G-A-A-G--A-TGA--AAGTGATTTTGAATAT
7936021 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
*
7936045 GAAGGTGAAAG
1 GAAGATGAAAG
7936056 CACAGGTACA
Statistics
Matches: 58, Mismatches: 1, Indels: 16
0.77 0.01 0.21
Matches are distributed among these distances:
24 27 0.47
25 1 0.02
26 4 0.07
27 2 0.03
29 2 0.03
30 4 0.07
31 1 0.02
32 17 0.29
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.30
Consensus pattern (24 bp):
GAAGATGAAAGTGATTTTGAATAT
Found at i:7936010 original size:32 final size:33
Alignment explanation
Indices: 7935968--7936035 Score: 129
Period size: 32 Copynumber: 2.1 Consensus size: 33
7935958 CAAAGAGGAA
7935968 GATGAAAGTGATTTTGAATATGAAGATGAAAGT
1 GATGAAAGTGATTTTGAATATGAAGATGAAAGT
7936001 GATG-AAGTGATTTTGAATATGAAGATGAAAGT
1 GATGAAAGTGATTTTGAATATGAAGATGAAAGT
7936033 GAT
1 GAT
7936036 TTTGAATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (33 bp):
GATGAAAGTGATTTTGAATATGAAGATGAAAGT
Found at i:7936562 original size:24 final size:24
Alignment explanation
Indices: 7936530--7936583 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
7936520 GACCAAAGAG
7936530 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
7936554 GAAGATGAAAGTGATTTTGAATAT
1 GAAGATGAAAGTGATTTTGAATAT
7936578 GAAGAT
1 GAAGAT
7936584 AAACAGGTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (24 bp):
GAAGATGAAAGTGATTTTGAATAT
Found at i:7936978 original size:509 final size:515
Alignment explanation
Indices: 7936001--7937017 Score: 1609
Period size: 509 Copynumber: 2.0 Consensus size: 515
7935991 AGATGAAAGT
*
7936001 GATGAAGTGATTTTGAATATGAAGATGAAAGTGATTTTGAATATGAAGGTGAAAGCACAGGTACA
1 GATGAAGTGATTTTGAATATGAAGATGAAAGTGATTTTGAATATGAAGAT-AAA-CACAGGTACA
*
7936066 CTACTCTTCCAAACTCAATAATAAGCTTTAAAACAAAAGTTCATCCATTGAATTTCTTTCTCTAT
64 CTACTCTTCCAAACTCAATAATAAGCTTTAAAACAAAAGTTCATACATTGAATTTCTTTCTCTAT
* **
7936131 GTATTCTCTCAATACTAAGCTTTAATTTCTATGCATTAATGCAATATTTTTATTTTGGCTGCCTG
129 GTATTCTCCCAATACTAAGCTTTAATTTCTATGCATTAACACAATATTTTTATTTTGGCTGCCTG
7936196 AGAGAAATTCTTTTTTTTTTTATGCTTTAAATGACTAAATGAAATTGCATCAACTGTAATCGGTT
194 AGAG-AATTC---TTTTTTTTATGCTTTAAATGAC--------A-T-CA-CAACTGTAATCGGTT
* *
7936261 TCTGTTGGCTGTCAATACTTCTTTCTAGATATCATTGTCGCATTATTAATTTCAATTCACAGTTC
244 TCTGCTGGCTGTCAATACTTCTTTCTAGATATCATTGTCGCATTATTAATATCAATTCACAGTTC
* *
7936326 TTATTCATAATATGTCATCCTTTGTCCAATTTTGGAGAATTGGCTTTGCTTTCTTCATCATCAAT
309 TTATTCATAATATGTCATCCTTTGTCCAATTTTGGAAAACTGGCTTTGCTTTCTTCATCATCAAT
* * *
7936391 CATCAAAAGCAAACAGTAATAAGTTAAGGTTTAATTTGCTTTGCAGGCAAGCCAATCAGTTGATG
374 CATCAAAAGCAAACAGTAATAAGTGAAGATTTAATTTGCTTTCCAGGCAAGCCAATCAGTTGATG
*
7936456 AAATTAGAGTGGAAGAATCTGCTACAGCTCAAGAAACTGCATTGCCAATTGGTTATATATGCTGG
439 AAATTAGAGTGGAAGAATCTGCTACAGCTCAAGAAACTGCATGGCCAATTGGTTATATATGCTGG
7936521 ACCAAAGAGGAA
504 ACCAAAGAGGAA
7936533 GATGAAAGTGATTTTGAATATGAAGATGAAAGTGATTTTGAATATGAAGAT-AA-ACAGGTACAC
1 GATG-AAGTGATTTTGAATATGAAGATGAAAGTGATTTTGAATATGAAGATAAACACAGGTACAC
7936596 TACTCTTCCAAACTCAATAATAAGCTTTAAAACAAAAGTTCATACATTGAATTAT-TTTCTCTAT
65 TACTCTTCCAAACTCAATAATAAGCTTTAAAACAAAAGTTCATACATTGAATT-TCTTTCTCTAT
*
7936660 GTATTCTCCCAATACTAAGCTTTAATTTCTATGCATTAACACAATATTTTTATTTTGGCTGTCTG
129 GTATTCTCCCAATACTAAGCTTTAATTTCTATGCATTAACACAATATTTTTATTTTGGCTGCCTG
*
7936725 AGAG-ATTC-TTTTTTTATGCTTTAAATGAC-T-A-AACTGTAATTGGTTTCTGCTGGCTGTCAA
194 AGAGAATTCTTTTTTTTATGCTTTAAATGACATCACAACTGTAATCGGTTTCTGCTGGCTGTCAA
* * * * *
7936785 TATTTGTTTCTAGATATCATTGTTGCATTATTAATATCAATTCACAGTTCTTGTTCTTAATATGT
259 TACTTCTTTCTAGATATCATTGTCGCATTATTAATATCAATTCACAGTTCTTATTCATAATATGT
7936850 CATCCTTTGTCCAATTTTGGAAAACTGGCTTTGCTTTCTTCATCATCAATCATCAAAAGCAAACA
324 CATCCTTTGTCCAATTTTGGAAAACTGGCTTTGCTTTCTTCATCATCAATCATCAAAAGCAAACA
*
7936915 GTAATAAGTGAAGATTTAATTTGCTTTCCAGGCAAGCCAATCAGTTGATGAAATTATAGTGGAAG
389 GTAATAAGTGAAGATTTAATTTGCTTTCCAGGCAAGCCAATCAGTTGATGAAATTAGAGTGGAAG
*
7936980 AATCTGCTACAGCTTAAGAAACTGCATGGCCAATTGGT
454 AATCTGCTACAGCTCAAGAAACTGCATGGCCAATTGGT
7937018 AGTGATATAG
Statistics
Matches: 461, Mismatches: 22, Indels: 27
0.90 0.04 0.05
Matches are distributed among these distances:
509 246 0.53
511 1 0.00
513 1 0.00
523 21 0.05
527 4 0.01
529 136 0.30
530 1 0.00
531 2 0.00
532 4 0.01
533 45 0.10
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (515 bp):
GATGAAGTGATTTTGAATATGAAGATGAAAGTGATTTTGAATATGAAGATAAACACAGGTACACT
ACTCTTCCAAACTCAATAATAAGCTTTAAAACAAAAGTTCATACATTGAATTTCTTTCTCTATGT
ATTCTCCCAATACTAAGCTTTAATTTCTATGCATTAACACAATATTTTTATTTTGGCTGCCTGAG
AGAATTCTTTTTTTTATGCTTTAAATGACATCACAACTGTAATCGGTTTCTGCTGGCTGTCAATA
CTTCTTTCTAGATATCATTGTCGCATTATTAATATCAATTCACAGTTCTTATTCATAATATGTCA
TCCTTTGTCCAATTTTGGAAAACTGGCTTTGCTTTCTTCATCATCAATCATCAAAAGCAAACAGT
AATAAGTGAAGATTTAATTTGCTTTCCAGGCAAGCCAATCAGTTGATGAAATTAGAGTGGAAGAA
TCTGCTACAGCTCAAGAAACTGCATGGCCAATTGGTTATATATGCTGGACCAAAGAGGAA
Found at i:7943452 original size:30 final size:31
Alignment explanation
Indices: 7943402--7943485 Score: 109
Period size: 30 Copynumber: 2.7 Consensus size: 31
7943392 ATAAAATATT
*
7943402 AAAACAATAAAATAAAATTATTA-TTGTTT-A
1 AAAATAATAAAATAAAATTATTACTT-TTTAA
* *
7943432 AAAATAATATAATAATATTATTACTTTTTAA
1 AAAATAATAAAATAAAATTATTACTTTTTAA
*
7943463 AAAATAATAAAATAAAAATATTA
1 AAAATAATAAAATAAAATTATTA
7943486 AAAAATTAGT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
30 23 0.50
31 23 0.50
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.37
Consensus pattern (31 bp):
AAAATAATAAAATAAAATTATTACTTTTTAA
Found at i:7945117 original size:30 final size:30
Alignment explanation
Indices: 7945070--7945161 Score: 130
Period size: 30 Copynumber: 3.0 Consensus size: 30
7945060 CGGGTTAGGA
7945070 TGGGAAGGGAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAA-GGAGTAAAAGTTTTGGGGGGAAAG
* *
7945101 TGGGAAGGAGTGAAAGTTTTGGAGGGAAAG
1 TGGGAAGGAGTAAAAGTTTTGGGGGGAAAG
* * *
7945131 TGGGAAGAAGTAAAAGTTTTGAGGGAAAAG
1 TGGGAAGGAGTAAAAGTTTTGGGGGGAAAG
7945161 T
1 T
7945162 AAAAAGGTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 48 0.89
31 6 0.11
ACGTcount: A:0.36, C:0.00, G:0.43, T:0.21
Consensus pattern (30 bp):
TGGGAAGGAGTAAAAGTTTTGGGGGGAAAG
Found at i:7945166 original size:21 final size:21
Alignment explanation
Indices: 7945132--7945172 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7945122 GAGGGAAAGT
*
7945132 GGGAAGAAGTAAAAGTTTTGA
1 GGGAAGAAGTAAAAGGTTTGA
7945153 GGGAA-AAGTAAAAAGGTTTG
1 GGGAAGAAGT-AAAAGGTTTG
7945173 GAAGTTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (21 bp):
GGGAAGAAGTAAAAGGTTTGA
Found at i:7947843 original size:162 final size:162
Alignment explanation
Indices: 7947570--7948131 Score: 678
Period size: 162 Copynumber: 3.5 Consensus size: 162
7947560 TGCTAACAGC
* * ** * * *
7947570 CTTGGGCAATTGCATACTTTGAAAATAAAGAGCTGCTCGCAATTAAAAGAAATAATCTAAGACTC
1 CTTGGACAATTGCATACTTTGAAAATAAAGAGTTGCTCGCAATTGGAAGACATAATCCAAGACCC
* * * * ** * *
7947635 ATAAGTGCCAAAAATAAGACTCCAAAGTCTAAAAGAAGTAAAAGTTGAAAAATGCGATAAGTTAA
66 ACAAGTGCCATAAATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTGAAAAATGTGATAACTTAA
** * *
7947700 AGTATCTCTTTCGTCTTTCTGTTGATAATGGT
131 AGTATCTCTTTCCACTATCTGTTGATAATAGT
* * *
7947732 CTTGGACAATTGCATACTTTGGAGATAAAGAGTTGCTCGCAATTGGAAGACATAATCCAAGGCCC
1 CTTGGACAATTGCATACTTTGAAAATAAAGAGTTGCTCGCAATTGGAAGACATAATCCAAGACCC
* ** *
7947797 ACAACTGCCATATGTAAGCCTCCAAAGTTTATGGGAAGTAAAAGTTGAAAAATGTGATAACTTAA
66 ACAAGTGCCATAAATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTGAAAAATGTGATAACTTAA
*
7947862 AGTATCTCTTTCCACTATCTGTTGCTAATAGT
131 AGTATCTCTTTCCACTATCTGTTGATAATAGT
* * * * * * * *
7947894 CTTAGACAATTGCATACTTAGAAGATAAAAAGTTGCACTCAATTGGAAAACATAATCCAAGACCT
1 CTTGGACAATTGCATACTTTGAAAATAAAGAGTTGCTCGCAATTGGAAGACATAATCCAAGACCC
* * * * *
7947959 GCAAGTGTCATACATAAGCCTCCAAAGTTTAAGGGAAATAAAAGTTGAAAAATGTGATAATTTAA
66 ACAAGTGCCATAAATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTGAAAAATGTGATAACTTAA
* * **
7948024 AATATCTC-TTCCACTATCTGCT-ACTAATACC
131 AGTATCTCTTTCCACTATCTGTTGA-TAATAGT
* **
7948055 CTTGGGCAATTGCATACTTTGAAAATAAAGAGTTGCTCGCAATTGGAAGATGTAATCCAAGACCC
1 CTTGGACAATTGCATACTTTGAAAATAAAGAGTTGCTCGCAATTGGAAGACATAATCCAAGACCC
7948120 ACAAGTGCCATA
66 ACAAGTGCCATA
7948132 CATATGTCTA
Statistics
Matches: 337, Mismatches: 62, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
161 82 0.24
162 255 0.76
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (162 bp):
CTTGGACAATTGCATACTTTGAAAATAAAGAGTTGCTCGCAATTGGAAGACATAATCCAAGACCC
ACAAGTGCCATAAATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTGAAAAATGTGATAACTTAA
AGTATCTCTTTCCACTATCTGTTGATAATAGT
Found at i:7951626 original size:17 final size:17
Alignment explanation
Indices: 7951596--7951638 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
7951586 ATTTAACCCT
*
7951596 ATAAAATT-TATAAA-A
1 ATAAAATTATTTAAATA
7951611 ATATAAATTATTTAAATA
1 ATA-AAATTATTTAAATA
7951629 ATAAAATTAT
1 ATAAAATTAT
7951639 ATTTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 3 0.12
16 5 0.21
17 12 0.50
18 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAAAATTATTTAAATA
Found at i:7952283 original size:23 final size:23
Alignment explanation
Indices: 7952240--7952285 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7952230 TTAATGTTTG
*
7952240 TGAACATGTTTGATTAAATTAAA
1 TGAACATGTTTGATGAAATTAAA
7952263 TGAACATGTTTG-TGAATATTAAA
1 TGAACATGTTTGATGAA-ATTAAA
7952286 CAAATGAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.39
Consensus pattern (23 bp):
TGAACATGTTTGATGAAATTAAA
Found at i:7952633 original size:29 final size:30
Alignment explanation
Indices: 7952562--7952642 Score: 126
Period size: 30 Copynumber: 2.7 Consensus size: 30
7952552 CTTTCATTTT
*
7952562 TTTTGTAAAAAAGGAAAAAGCATGGGGACA
1 TTTTGTCAAAAAGGAAAAAGCATGGGGACA
7952592 TTTTGTCAAAAAGGAAAAAGCATGGGGACA
1 TTTTGTCAAAAAGGAAAAAGCATGGGGACA
* * *
7952622 TTTTTTTAAAAGGGAAAAAGC
1 TTTTGTCAAAAAGGAAAAAGC
7952643 TGTAACACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.44, C:0.07, G:0.25, T:0.23
Consensus pattern (30 bp):
TTTTGTCAAAAAGGAAAAAGCATGGGGACA
Found at i:7954171 original size:32 final size:32
Alignment explanation
Indices: 7954130--7954195 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
7954120 ACCTTCGTTA
*
7954130 ACACTTGTTAAACCAAATAAATGAATTTTTCT
1 ACACTTGTTAAACCAAAGAAATGAATTTTTCT
7954162 ACACTTGTTAAACCAAAGAAATGAATTTTTCT
1 ACACTTGTTAAACCAAAGAAATGAATTTTTCT
7954194 AC
1 AC
7954196 TCGAAACCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.35
Consensus pattern (32 bp):
ACACTTGTTAAACCAAAGAAATGAATTTTTCT
Found at i:7957210 original size:28 final size:28
Alignment explanation
Indices: 7957178--7957247 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
7957168 ATAGTAAGTC
7957178 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
7957206 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
7957234 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7957248 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:7964997 original size:28 final size:28
Alignment explanation
Indices: 7964965--7965034 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
7964955 ATAGTAAGTC
7964965 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
7964993 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
7965021 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7965035 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:7974216 original size:18 final size:18
Alignment explanation
Indices: 7974195--7974297 Score: 98
Period size: 18 Copynumber: 5.7 Consensus size: 18
7974185 AATTTCATTT
* * *
7974195 AGTAACATTCAATCATTC
1 AGTAACAATCAGTTATTC
* *
7974213 AGTAGCAATTAGTTATTC
1 AGTAACAATCAGTTATTC
* **
7974231 AGTAACAATCATTTGCTC
1 AGTAACAATCAGTTATTC
*
7974249 AGTAGCAATCAGTTATTC
1 AGTAACAATCAGTTATTC
* *
7974267 AGTAACGATCAATTATTC
1 AGTAACAATCAGTTATTC
*
7974285 AGTAACAGTCAGT
1 AGTAACAATCAGT
7974298 CGTTCAGTAT
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (18 bp):
AGTAACAATCAGTTATTC
Found at i:7974235 original size:36 final size:35
Alignment explanation
Indices: 7974195--7974306 Score: 116
Period size: 36 Copynumber: 3.1 Consensus size: 35
7974185 AATTTCATTT
* *
7974195 AGTAACATTCAATCATTCAGTAGCAATTAGTTATTC
1 AGTAACA-TCAATTATTCAGTAGCAATCAGTTATTC
* **
7974231 AGTAACAATCATTTGCTCAGTAGCAATCAGTTATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
* * **
7974267 AGTAACGATCAATTATTCAGTAACAGTCAGTCGTTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAGTTATTC
7974303 AGTA
1 AGTA
7974307 TTTTTATTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
36 61 0.98
37 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAGTTATTC
Found at i:7975779 original size:28 final size:28
Alignment explanation
Indices: 7975719--7975780 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
7975709 ATATAATTAT
*
7975719 TTAATTAATAAATATCTTTTACTTAATA
1 TTAAATAATAAATATCTTTTACTTAATA
*
7975747 ATAAATAATAAATATCTATTTACTTAA-A
1 TTAAATAATAAATATCT-TTTACTTAATA
7975775 TTAAAT
1 TTAAAT
7975781 GTAATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (28 bp):
TTAAATAATAAATATCTTTTACTTAATA
Found at i:7976142 original size:20 final size:20
Alignment explanation
Indices: 7976096--7976143 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
7976086 AGTCTTTCTT
*
7976096 CCTAATTACTCTTAATTAAG
1 CCTAATTACACTTAATTAAG
7976116 -CTAAATT-CACTTAATTAAAG
1 CCT-AATTACACTTAATT-AAG
7976136 CCTAATTA
1 CCTAATTA
7976144 ACCACTCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.38
Consensus pattern (20 bp):
CCTAATTACACTTAATTAAG
Found at i:7976989 original size:16 final size:16
Alignment explanation
Indices: 7976970--7977020 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
7976960 CTTTTTTTTA
7976970 TAATTTCAGTTTTACT
1 TAATTTCAGTTTTACT
**
7976986 TAATTTTTG-TTT--T
1 TAATTTCAGTTTTACT
7976999 TAATTTCAGTTTTACT
1 TAATTTCAGTTTTACT
7977015 TAATTT
1 TAATTT
7977021 TAAACATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
13 8 0.29
14 3 0.11
15 3 0.11
16 14 0.50
ACGTcount: A:0.24, C:0.08, G:0.06, T:0.63
Consensus pattern (16 bp):
TAATTTCAGTTTTACT
Found at i:7977002 original size:29 final size:28
Alignment explanation
Indices: 7976961--7977021 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 28
7976951 ATTGACGTTC
7976961 TTTTTTTTATAATTTCAGTTTTACTTAA
1 TTTTTTTTATAATTTCAGTTTTACTTAA
*
7976989 TTTTTGTTTTTAATTTCAGTTTTACTTAA
1 TTTTT-TTTATAATTTCAGTTTTACTTAA
7977018 TTTT
1 TTTT
7977022 AAACATGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 5 0.16
29 26 0.84
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (28 bp):
TTTTTTTTATAATTTCAGTTTTACTTAA
Found at i:7985182 original size:26 final size:26
Alignment explanation
Indices: 7985073--7985201 Score: 118
Period size: 26 Copynumber: 5.0 Consensus size: 26
7985063 AAACAAAACA
* * *
7985073 AAATAACATATAAAACAATTTGAAGT
1 AAATAATATATAAAACAATTTAAAAT
*
7985099 AAAT-A-GTATAAAACAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
7985123 GAATAATATGTAAAACAAATATTAAAAT
1 AAATAATATATAAAAC-AAT-TTAAAAT
* *
7985151 AAATAATATATAAAGCAATTCAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* * * *
7985177 AAATAATTTACAAGACACTTTAAAA
1 AAATAATATATAAAACAATTTAAAA
7985202 GAACATATAA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
24 19 0.23
25 2 0.02
26 36 0.43
27 6 0.07
28 20 0.24
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (26 bp):
AAATAATATATAAAACAATTTAAAAT
Found at i:7985286 original size:6 final size:6
Alignment explanation
Indices: 7985275--7985307 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
7985265 CAGTTTTTTT
7985275 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
7985308 GATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:7985347 original size:26 final size:26
Alignment explanation
Indices: 7985311--7985370 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
7985301 AATAAAAGAT
*
7985311 ATATATATAATAGTTCAAAACAAATA
1 ATATATATAATAATTCAAAACAAATA
* *
7985337 ATATATATAATAATTTAAAATAAATA
1 ATATATATAATAATTCAAAACAAATA
7985363 A-ATA-ATAA
1 ATATATATAA
7985371 AAGTGTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (26 bp):
ATATATATAATAATTCAAAACAAATA
Found at i:7985429 original size:50 final size:50
Alignment explanation
Indices: 7985351--7985470 Score: 152
Period size: 50 Copynumber: 2.4 Consensus size: 50
7985341 ATATAATAAT
** * *
7985351 TTAAAATAAATAAATAATAAAAGTGTTTAAAATAAGTAATACAGGGAAA-AC
1 TTAAAATAAAT-AATAATAAAACAGTTTAAAATAA-TAATACAAGAAAAGAC
* * *
7985402 TTAAAATATATAATAATAAAACAGTTTAAAATGATAATATAAGAAAAGAC
1 TTAAAATAAATAATAATAAAACAGTTTAAAATAATAATACAAGAAAAGAC
7985452 TTAAAATAAATAATAATAA
1 TTAAAATAAATAATAATAA
7985471 TAAAAAAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 10 0.17
50 40 0.67
51 10 0.17
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (50 bp):
TTAAAATAAATAATAATAAAACAGTTTAAAATAATAATACAAGAAAAGAC
Found at i:7985464 original size:26 final size:26
Alignment explanation
Indices: 7985351--7985475 Score: 80
Period size: 25 Copynumber: 4.9 Consensus size: 26
7985341 ATATAATAAT
* **
7985351 TTAAAATAAATAA-ATAATAAAAGTGT
1 TTAAAATAAATAATATAAGAAAAG-AC
* * * *
7985377 TTAAAATAAGTAATACAGGGAAA-AC
1 TTAAAATAAATAATATAAGAAAAGAC
* * *
7985402 TTAAAATATATAATAATAA-AACAG-T
1 TTAAAATAAATAAT-ATAAGAAAAGAC
*
7985427 TTAAAAT-GATAATATAAGAAAAGAC
1 TTAAAATAAATAATATAAGAAAAGAC
*
7985452 TTAAAATAAATAATAATAATAAAA
1 TTAAAATAAATAAT-ATAAGAAAA
7985476 AAAAATTCTT
Statistics
Matches: 73, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
23 4 0.05
24 9 0.12
25 28 0.38
26 19 0.26
27 13 0.18
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (26 bp):
TTAAAATAAATAATATAAGAAAAGAC
Found at i:7987255 original size:18 final size:18
Alignment explanation
Indices: 7987232--7987269 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7987222 ATTTAGGCCC
7987232 TTTATAATTTATAAAATT
1 TTTATAATTTATAAAATT
7987250 TTTATAATTTATAAAATT
1 TTTATAATTTATAAAATT
7987268 TT
1 TT
7987270 AAATTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATAATTTATAAAATT
Found at i:7989128 original size:25 final size:25
Alignment explanation
Indices: 7989083--7989137 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
7989073 TTTAAAATTT
7989083 TTTATCTATTTTTATTAATTTTCAAA
1 TTTATCTATTTTTA-TAATTTTCAAA
* *
7989109 TTTATGTATTTTTA-AGATTTTCTAA
1 TTTATCTATTTTTATA-ATTTTCAAA
7989134 TTTA
1 TTTA
7989138 AAAAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 1 0.04
25 12 0.46
26 13 0.50
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTATCTATTTTTATAATTTTCAAA
Found at i:7989685 original size:27 final size:28
Alignment explanation
Indices: 7989615--7989685 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
7989605 ATATTAAAAC
7989615 AATAA-AATAAAATTATTATTGTTTAAA
1 AATAATAATAAAATTATTATTGTTTAAA
**
7989642 AATAAT-ATATTATTATTACTT-TTTAAA
1 AATAATAATAAAATTATTA-TTGTTTAAA
*
7989669 AA-AATAATAAAAATATT
1 AATAATAATAAAATTATT
7989686 TGTATATTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
26 3 0.08
27 31 0.86
28 2 0.06
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
AATAATAATAAAATTATTATTGTTTAAA
Found at i:7990104 original size:21 final size:21
Alignment explanation
Indices: 7990080--7990125 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
7990070 AATGCCTGAC
7990080 TTAACTTGTAGATCAATCACT
1 TTAACTTGTAGATCAATCACT
7990101 TTAACTTGTAGATCAATCACT
1 TTAACTTGTAGATCAATCACT
7990122 TTAA
1 TTAA
7990126 ATAAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (21 bp):
TTAACTTGTAGATCAATCACT
Found at i:8000577 original size:14 final size:15
Alignment explanation
Indices: 8000555--8000588 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
8000545 ATTCCATTGC
8000555 TTCTTCTTCTGTTTTCT
1 TTCTTCTTC--TTTTCT
8000572 TTCTTCTTCTTTTCT
1 TTCTTCTTCTTTTCT
8000587 TT
1 TT
8000589 TTGCTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (15 bp):
TTCTTCTTCTTTTCT
Found at i:8004869 original size:3 final size:3
Alignment explanation
Indices: 8004861--8004922 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
8004851 CCCATTTTCC
8004861 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8004909 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
8004923 CCTTTATTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8009624 original size:41 final size:41
Alignment explanation
Indices: 8009432--8009633 Score: 282
Period size: 41 Copynumber: 4.9 Consensus size: 41
8009422 TTGTAAAACA
* * *
8009432 CAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGCTAAA-AA
1 CAGAGCATTAGCGGCGCTTTTGGT--AAAACGCCGCTAAAGAC
*
8009473 CAGAGCATTAACGGCGCTTTTGGTAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
* * **
8009514 CCGAGCATTAGCGGGGCTTTTGGTAAAACAACGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
*
8009555 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTATAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
*
8009596 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGTTAAA
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA
8009634 AGTCATATAA
Statistics
Matches: 143, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 14 0.10
41 123 0.86
42 6 0.04
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (41 bp):
CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
Found at i:8009814 original size:14 final size:14
Alignment explanation
Indices: 8009792--8009869 Score: 66
Period size: 14 Copynumber: 5.2 Consensus size: 14
8009782 TTAATTATCA
*
8009792 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
8009806 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
*
8009820 ATATGGGTTTAAGGT
1 TTAT-GGTTTAAGGT
*
8009835 TTATGAGTTAACTATGGT
1 TTATG-GTT---TAAGGT
*
8009853 TTAGGGTTTAAGGT
1 TTATGGTTTAAGGT
8009867 TTA
1 TTA
8009870 AGAGTTAACT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
14 24 0.47
15 15 0.29
17 3 0.06
18 9 0.18
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:8009946 original size:14 final size:15
Alignment explanation
Indices: 8009924--8010020 Score: 64
Period size: 14 Copynumber: 6.7 Consensus size: 15
8009914 GGGATTATGA
*
8009924 TTTAAGGTTTAAGGG
1 TTTAGGGTTTAAGGG
8009939 -TTAGGG-TT--GGAG
1 TTTAGGGTTTAAGG-G
* *
8009951 TTTAAGGTGTAAGGG
1 TTTAGGGTTTAAGGG
8009966 TTTAGGG-TTAAGGG
1 TTTAGGGTTTAAGGG
* *
8009980 TTTAGTGTTTATGGG
1 TTTAGGGTTTAAGGG
*
8009995 -ATATGGG-TTAAGAGG
1 TTTA-GGGTTTAAG-GG
8010010 TTTAGGGTTTA
1 TTTAGGGTTTA
8010021 GATTAATTAG
Statistics
Matches: 61, Mismatches: 11, Indels: 19
0.67 0.12 0.21
Matches are distributed among these distances:
11 2 0.03
12 1 0.02
13 7 0.11
14 24 0.39
15 20 0.33
16 7 0.11
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.39
Consensus pattern (15 bp):
TTTAGGGTTTAAGGG
Found at i:8009989 original size:7 final size:7
Alignment explanation
Indices: 8009909--8010021 Score: 54
Period size: 7 Copynumber: 15.9 Consensus size: 7
8009899 TGAATTATGA
8009909 GTTTAGG
1 GTTTAGG
* *
8009916 GATTATG
1 GTTTAGG
* *
8009923 ATTTAAG
1 GTTTAGG
8009930 GTTTAAGG
1 GTTT-AGG
8009938 G-TTAGG
1 GTTTAGG
8009944 G-TT-GG
1 GTTTAGG
*
8009949 AGTTTAAG
1 -GTTTAGG
*
8009957 GTGTAAGG
1 GT-TTAGG
8009965 GTTTAGG
1 GTTTAGG
*
8009972 GTTAAGG
1 GTTTAGG
*
8009979 GTTTAGT
1 GTTTAGG
8009986 GTTTATGG
1 GTTTA-GG
*
8009994 G-ATATGG
1 GTTTA-GG
*
8010001 GTTAAGAG
1 GTTTAG-G
8010009 GTTTAGG
1 GTTTAGG
8010016 GTTTAG
1 GTTTAG
8010022 ATTAATTAGT
Statistics
Matches: 79, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
5 2 0.03
6 7 0.09
7 52 0.66
8 18 0.23
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.39
Consensus pattern (7 bp):
GTTTAGG
Found at i:8010711 original size:15 final size:15
Alignment explanation
Indices: 8010691--8010720 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8010681 ATAAAAAAAC
8010691 GCCGCAAAATTTTTT
1 GCCGCAAAATTTTTT
8010706 GCCGCAAAATTTTTT
1 GCCGCAAAATTTTTT
8010721 ACAAGAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (15 bp):
GCCGCAAAATTTTTT
Found at i:8012804 original size:21 final size:22
Alignment explanation
Indices: 8012762--8012805 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8012752 GACTATTTAT
* *
8012762 TTGAATCTGTCTAATTGTATTA
1 TTGAATCTGTCTAAGTGAATTA
*
8012784 TTGAA-CTGTCTTAGTGAATTA
1 TTGAATCTGTCTAAGTGAATTA
8012805 T
1 T
8012806 GTGGTTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.48
Consensus pattern (22 bp):
TTGAATCTGTCTAAGTGAATTA
Found at i:8014153 original size:42 final size:43
Alignment explanation
Indices: 8014106--8014226 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 43
8014096 ATTCTTTAGT
* * * *
8014106 GGCGTTTGTGAGAAAAGCGCTGCTAAAGGT-TTGTTCCGTAGC
1 GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCCGTAGC
* ** *
8014148 GGCGTTTGT-AAAAAAGCGCCGCTGAAGGTCATGGTCTTTAGT
1 GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCCGTAGC
*
8014190 GGCGTTTGTGAAAAAAGTGCCGCTAAAGGTCATGGTC
1 GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
8014227 TTTAGTGGCG
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 17 0.25
42 25 0.37
43 25 0.37
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (43 bp):
GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTCCGTAGC
Found at i:8014219 original size:43 final size:43
Alignment explanation
Indices: 8014098--8014239 Score: 189
Period size: 43 Copynumber: 3.3 Consensus size: 43
8014088 AAGCTTATAT
* * * *
8014098 TCTTTAGTGGCGTTTGTGAGAAAAGCGCTGCTAAAGGT-TTGT
1 TCTTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGG
** * *
8014140 TCCGTAGCGGCGTTTGT-AAAAAAGCGCCGCTGAAGGTCATGG
1 TCTTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGG
*
8014182 TCTTTAGTGGCGTTTGTGAAAAAAGTGCCGCTAAAGGTCATGG
1 TCTTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGG
8014225 TCTTTAGTGGCGTTT
1 TCTTTAGTGGCGTTT
8014240 TTTTAAATAA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 17 0.20
42 30 0.35
43 38 0.45
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (43 bp):
TCTTTAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGG
Found at i:8014632 original size:156 final size:156
Alignment explanation
Indices: 8014359--8014648 Score: 395
Period size: 156 Copynumber: 1.9 Consensus size: 156
8014349 CTGTAGTGAG
* * * * *
8014359 AAGTTGAAAAATGCAATAATTTAAAATACCTCTTCCCACTTTTTTTTGCTAATAGCCTTGGGCAA
1 AAGTTGAAAAATGCAATAATTTAAAATACCTCTTCCCACTGTCTATTGCTAATACCCTTGCGCAA
* * * *
8014424 ATGCATACTTTGAAGATAAAGAGTTGCTAGAGCTTGGAAGGCATAATTCAAGA-CTCACAAGTGC
66 ATACATACTTTGAAGATAAAGAGTTGCTAGAGATTGGAAGACATAATCCAAGATC-CACAAGTGC
8014488 CATACCTCCAAATTTTAAGGGAAATAA
130 CATACCTCCAAATTTTAAGGGAAATAA
* * * *
8014515 AAGTTGAAAAATGCGATAATTTGAAGTATCTCTTCCCACTGTCTATTGCTAATACCCTTGCGCAA
1 AAGTTGAAAAATGCAATAATTTAAAATACCTCTTCCCACTGTCTATTGCTAATACCCTTGCGCAA
* * * *
8014580 TTACATACTTTGAAGATAAAGAGTTGCTCGCA-ATTGGAAGATATAATCCAAGATCCACAAGTGG
66 ATACATACTTTGAAGATAAAGAGTTGCTAG-AGATTGGAAGACATAATCCAAGATCCACAAGTGC
8014644 CATAC
130 CATAC
8014649 ATATGTCTAC
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
156 113 0.98
157 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (156 bp):
AAGTTGAAAAATGCAATAATTTAAAATACCTCTTCCCACTGTCTATTGCTAATACCCTTGCGCAA
ATACATACTTTGAAGATAAAGAGTTGCTAGAGATTGGAAGACATAATCCAAGATCCACAAGTGCC
ATACCTCCAAATTTTAAGGGAAATAA
Found at i:8018174 original size:15 final size:15
Alignment explanation
Indices: 8018154--8018207 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
8018144 ATACTACAAA
8018154 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
8018169 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
8018186 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
8018203 ATATT
1 ATATT
8018208 AATATAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:8018259 original size:16 final size:17
Alignment explanation
Indices: 8018240--8018276 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
8018230 ATGTAAATAA
*
8018240 TATTATTTAAAA-TTAT
1 TATTACTTAAAATTTAT
8018256 TATT-CTTAAAATTTAT
1 TATTACTTAAAATTTAT
8018272 TATTA
1 TATTA
8018277 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTACTTAAAATTTAT
Found at i:8018264 original size:15 final size:16
Alignment explanation
Indices: 8018246--8018275 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8018236 ATAATATTAT
8018246 TTAAAA-TTATTATTC
1 TTAAAATTTATTATTC
8018261 TTAAAATTTATTATT
1 TTAAAATTTATTATT
8018276 AAAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTC
Found at i:8018309 original size:20 final size:22
Alignment explanation
Indices: 8018284--8018329 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
8018274 TTAAAATAAA
*
8018284 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
8018304 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
8018326 ATTA
1 ATTA
8018330 TATCACTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.57
21 2 0.09
22 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:8020508 original size:20 final size:18
Alignment explanation
Indices: 8020442--8020509 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 18
8020432 ATTATTTTAG
*
8020442 AAAATTTTTTAAAATTATT
1 AAAATATTTTAAAATT-TT
*
8020461 AAAA-A-ATTAGAAATTTT
1 AAAATATTTTA-AAATTTT
8020478 ATAAATATTTTAAAATTTT
1 A-AAATATTTTAAAATTTT
8020497 GAAAATTATTTTA
1 -AAAA-TATTTTA
8020510 TTTTTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
17 6 0.15
18 8 0.20
19 15 0.38
20 11 0.28
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
AAAATATTTTAAAATTTT
Found at i:8029318 original size:2 final size:2
Alignment explanation
Indices: 8029278--8029302 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8029268 TAGTCTCTTT
8029278 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8029303 TGCAAACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8029330 original size:18 final size:16
Alignment explanation
Indices: 8029294--8029325 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8029284 TATATATATA
8029294 TATATATATTGCAAAC
1 TATATATATTGCAAAC
8029310 TATATATATTGCAAAC
1 TATATATATTGCAAAC
8029326 ACTATCTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
TATATATATTGCAAAC
Found at i:8030979 original size:24 final size:23
Alignment explanation
Indices: 8030920--8030980 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
8030910 TTGTTATTAT
* * *
8030920 GTAAATTTAAAAACATCAATAAT
1 GTAAATATAAAAACATCAAGAAC
* *
8030943 GTTAATATCAAAAACATTACAGAAC
1 GTAAATAT-AAAAACATCA-AGAAC
8030968 GTAAATATAAAAA
1 GTAAATATAAAAA
8030981 TTTTGTTTCT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
23 6 0.20
24 14 0.47
25 10 0.33
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.26
Consensus pattern (23 bp):
GTAAATATAAAAACATCAAGAAC
Found at i:8035593 original size:25 final size:26
Alignment explanation
Indices: 8035565--8035633 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
8035555 GAGCGTCTGG
8035565 TTATTTAGCTCTTATGAGCATCCC-A
1 TTATTTAGCTCTTATGAGCATCCCGA
* * *
8035590 TTATATAGCTCTTACGAGCTTCCCGA
1 TTATTTAGCTCTTATGAGCATCCCGA
* *
8035616 -TATTTGGCTCTCATGAGC
1 TTATTTAGCTCTTATGAGC
8035634 TTTTCTATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.38
Consensus pattern (26 bp):
TTATTTAGCTCTTATGAGCATCCCGA
Found at i:8035782 original size:25 final size:25
Alignment explanation
Indices: 8035727--8035787 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
8035717 TACAGCTCAC
*
8035727 ATGAGCTTCCCGTTACATGGCTCGG
1 ATGAGCTTCCCATTACATGGCTCGG
* *
8035752 AAGAGCTTCCCAATTACAT-GCTCGT
1 ATGAGCTTCCC-ATTACATGGCTCGG
*
8035777 ATGAGCATCCC
1 ATGAGCTTCCC
8035788 TAAATATGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 24 0.80
26 6 0.20
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (25 bp):
ATGAGCTTCCCATTACATGGCTCGG
Found at i:8041417 original size:13 final size:13
Alignment explanation
Indices: 8041399--8041424 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8041389 TGAAAAATGC
8041399 GCAACTGAGCAAT
1 GCAACTGAGCAAT
8041412 GCAACTGAGCAAT
1 GCAACTGAGCAAT
8041425 TTGCATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (13 bp):
GCAACTGAGCAAT
Found at i:8041929 original size:83 final size:82
Alignment explanation
Indices: 8041791--8041943 Score: 236
Period size: 83 Copynumber: 1.9 Consensus size: 82
8041781 AGATCTAGAG
*
8041791 TGTTCCCAAATGCAAGAAACATACAAGGATGAGAAGTGTTAATCTCAATGACTCAAAGTCTTCCA
1 TGTTCCCAAATGCAAGAAACATACAAGGATGAGAAGGGTTAATCTCAATGACTCAAAGTCTTCCA
8041856 CTATTGAACGAAGTAGT
66 CTATTGAACGAAGTAGT
* * * *
8041873 TGTTCCCAATTGCAAGATATA-ATCCAAGGATGAGAAGGGTTAATCTCAATGGCTCAAGGTCTTC
1 TGTTCCCAAATGCAAGA-A-ACATACAAGGATGAGAAGGGTTAATCTCAATGACTCAAAGTCTTC
8041937 CACTATT
64 CACTATT
8041944 AAATGAATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
82 16 0.25
83 47 0.73
84 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (82 bp):
TGTTCCCAAATGCAAGAAACATACAAGGATGAGAAGGGTTAATCTCAATGACTCAAAGTCTTCCA
CTATTGAACGAAGTAGT
Found at i:8042556 original size:12 final size:12
Alignment explanation
Indices: 8042539--8042563 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8042529 TTGTGTGTTC
8042539 TTTATTTTATTT
1 TTTATTTTATTT
8042551 TTTATTTTATTT
1 TTTATTTTATTT
8042563 T
1 T
8042564 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:8046989 original size:13 final size:13
Alignment explanation
Indices: 8046971--8046996 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8046961 TTGTGTGTTC
8046971 TTTATTTTATTTT
1 TTTATTTTATTTT
8046984 TTTATTTTATTTT
1 TTTATTTTATTTT
8046997 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:8049180 original size:41 final size:41
Alignment explanation
Indices: 8049086--8049167 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
8049076 ATTTTAAGAG
8049086 ATAATTTATAATTCTTGATCATTAAATACAAATTCACCAAT
1 ATAATTTATAATTCTTGATCATTAAATACAAATTCACCAAT
8049127 ATAATTTATAATTCTTGATCATTAAATACAAATTCACCAAT
1 ATAATTTATAATTCTTGATCATTAAATACAAATTCACCAAT
8049168 CACATTAGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (41 bp):
ATAATTTATAATTCTTGATCATTAAATACAAATTCACCAAT
Found at i:8049498 original size:21 final size:20
Alignment explanation
Indices: 8049434--8049503 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
8049424 CCATCGTAAA
* *
8049434 TGCATAACAGAGGCACCAAAG
1 TGCA-AACAAAGGCACCGAAG
* * *
8049455 TGCAGACAAAGACA-CGATTG
1 TGCAAACAAAGGCACCGA-AG
8049475 TGCAAATCAAAGGCACCGAAG
1 TGCAAA-CAAAGGCACCGAAG
8049496 TGCAAACA
1 TGCAAACA
8049504 GAGACATTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
19 2 0.05
20 15 0.39
21 18 0.47
22 3 0.08
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (20 bp):
TGCAAACAAAGGCACCGAAG
Found at i:8049524 original size:19 final size:19
Alignment explanation
Indices: 8049500--8049572 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
8049490 CCGAAGTGCA
**
8049500 AACAGAGACATTAAACTGT
1 AACAGAGACATCGAACTGT
* * *
8049519 AACAGAGACACCGAAGTGCA
1 AACAGAGACATCGAACTG-T
8049539 AACAGAGACATCGAACTGT
1 AACAGAGACATCGAACTGT
*
8049558 AACAGAGACACCGAA
1 AACAGAGACATCGAA
8049573 GTGCAATCCC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 28 0.64
20 16 0.36
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (19 bp):
AACAGAGACATCGAACTGT
Found at i:8049538 original size:39 final size:39
Alignment explanation
Indices: 8049488--8049578 Score: 164
Period size: 39 Copynumber: 2.3 Consensus size: 39
8049478 AAATCAAAGG
*
8049488 CACCGAAGTGCAAACAGAGACATTAAACTGTAACAGAGA
1 CACCGAAGTGCAAACAGAGACATCAAACTGTAACAGAGA
*
8049527 CACCGAAGTGCAAACAGAGACATCGAACTGTAACAGAGA
1 CACCGAAGTGCAAACAGAGACATCAAACTGTAACAGAGA
8049566 CACCGAAGTGCAA
1 CACCGAAGTGCAA
8049579 TCCCGTATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.44, C:0.23, G:0.22, T:0.11
Consensus pattern (39 bp):
CACCGAAGTGCAAACAGAGACATCAAACTGTAACAGAGA
Found at i:8049544 original size:20 final size:20
Alignment explanation
Indices: 8049434--8049578 Score: 107
Period size: 20 Copynumber: 7.2 Consensus size: 20
8049424 CCATCGTAAA
* *
8049434 TGCATAACAGAGGCACCAAAG
1 TGCA-AACAGAGACACCGAAG
* * *
8049455 TGCAGACAAAGACA-CGATTG
1 TGCAAACAGAGACACCGA-AG
* *
8049475 TGCAAATCAAAGGCACCGAAG
1 TGCAAA-CAGAGACACCGAAG
*** *
8049496 TGCAAACAGAGACATTAAAC
1 TGCAAACAGAGACACCGAAG
*
8049516 TG-TAACAGAGACACCGAAG
1 TGCAAACAGAGACACCGAAG
* *
8049535 TGCAAACAGAGACATCGAAC
1 TGCAAACAGAGACACCGAAG
*
8049555 TG-TAACAGAGACACCGAAG
1 TGCAAACAGAGACACCGAAG
8049574 TGCAA
1 TGCAA
8049579 TCCCGTATAA
Statistics
Matches: 93, Mismatches: 26, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 32 0.34
20 40 0.43
21 18 0.19
22 3 0.03
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (20 bp):
TGCAAACAGAGACACCGAAG
Found at i:8051712 original size:18 final size:19
Alignment explanation
Indices: 8051672--8051714 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8051662 ATTCTTAGAT
*
8051672 TTTTGGGACTGTATTATGT
1 TTTTGGGACTGTATTATGG
* *
8051691 TTTTGGG-CTGTGTTTTGG
1 TTTTGGGACTGTATTATGG
8051709 TTTTGG
1 TTTTGG
8051715 TTTTGGTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.07, C:0.05, G:0.33, T:0.56
Consensus pattern (19 bp):
TTTTGGGACTGTATTATGG
Found at i:8061249 original size:20 final size:19
Alignment explanation
Indices: 8061214--8061260 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
8061204 AAAATAAATT
*
8061214 TTATTTATTTTTCAAAAAA
1 TTATTTTTTTTTCAAAAAA
*
8061233 TTATTTTTTTGTTCAAATAA
1 TTATTTTTTT-TTCAAAAAA
8061253 TT-TTTTTT
1 TTATTTTTT
8061261 GAATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATTTTTTTTTCAAAAAA
Found at i:8061260 original size:19 final size:19
Alignment explanation
Indices: 8061205--8061260 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
8061195 TTTCACCTAA
*
8061205 AAATAAATTTTATTTATTTTTC
1 AAAT-AATTTT-TTT-TTGTTC
*
8061227 AAAAAATTATTTTTTTGTTC
1 AAATAATT-TTTTTTTGTTC
8061247 AAATAATTTTTTTT
1 AAATAATTTTTTTT
8061261 GAATTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 6 0.20
20 12 0.40
21 7 0.23
22 5 0.17
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (19 bp):
AAATAATTTTTTTTTGTTC
Found at i:8063218 original size:16 final size:17
Alignment explanation
Indices: 8063175--8063223 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
8063165 CAATGACCTA
8063175 TTCCTTTTTTT-TTTTC
1 TTCCTTTTTTTCTTTTC
*
8063191 TTACTTTCTTTTTCTTTTC
1 TT-CCTT-TTTTTCTTTTC
8063210 -TCCTTTTTTTCTTT
1 TTCCTTTTTTTCTTT
8063224 ATTGCTTCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 11 0.39
17 6 0.21
18 6 0.21
19 5 0.18
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (17 bp):
TTCCTTTTTTTCTTTTC
Found at i:8066810 original size:18 final size:18
Alignment explanation
Indices: 8066762--8066812 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
8066752 CGATATTTTT
8066762 TATTTTTATA-ATTATATG
1 TATTTTTATATATT-TATG
* *
8066780 T-TTTTGAAAATATTTATG
1 TATTTT-TATATATTTATG
8066798 TATTTTTATATATTT
1 TATTTTTATATATTT
8066813 CTTCAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.15
18 15 0.58
19 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (18 bp):
TATTTTTATATATTTATG
Found at i:8067975 original size:15 final size:16
Alignment explanation
Indices: 8067957--8067992 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
8067947 GTAAAAAGTA
*
8067957 TAATTATTAAG-ATTG
1 TAATTATAAAGAATTG
8067972 TAATTATAAAGAATTG
1 TAATTATAAAGAATTG
8067988 TAATT
1 TAATT
8067993 TTTTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (16 bp):
TAATTATAAAGAATTG
Found at i:8068816 original size:32 final size:31
Alignment explanation
Indices: 8068770--8068830 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
8068760 AAAATTTAAG
*
8068770 TATGAAATAATTTAAT-ATGTGATTACAATAT
1 TATGAAAAAATTTAATGATGTG-TTACAATAT
8068801 TATGATAAAAATTTAATGGATGTGTTACAA
1 TATGA-AAAAATTTAAT-GATGTGTTACAA
8068831 GATTGAAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 5 0.19
32 10 0.38
33 6 0.23
34 5 0.19
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.39
Consensus pattern (31 bp):
TATGAAAAAATTTAATGATGTGTTACAATAT
Found at i:8072714 original size:20 final size:21
Alignment explanation
Indices: 8072667--8072716 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
8072657 AAGGATCTAA
*
8072667 TTATAAAAAAATAGAATTAAC
1 TTATTAAAAAATAGAATTAAC
*
8072688 TTATTAAAAAATATAATGTAA-
1 TTATTAAAAAATAGAAT-TAAC
8072709 TT-TTAAAA
1 TTATTAAAA
8072717 TTAAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 17 0.65
22 3 0.12
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (21 bp):
TTATTAAAAAATAGAATTAAC
Found at i:8073301 original size:21 final size:19
Alignment explanation
Indices: 8073255--8073301 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
8073245 TTGGGATATC
*
8073255 AAAT-CACCAAAATTTTAA
1 AAATACACCAAAATTGTAA
8073273 ATAATACACCAAGAATATGTAA
1 A-AATACACCAA-AAT-TGTAA
8073295 AAATACA
1 AAATACA
8073302 TTGATTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 1 0.04
19 3 0.12
20 6 0.25
21 9 0.38
22 5 0.21
ACGTcount: A:0.57, C:0.15, G:0.04, T:0.23
Consensus pattern (19 bp):
AAATACACCAAAATTGTAA
Found at i:8073777 original size:28 final size:27
Alignment explanation
Indices: 8073732--8073785 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
8073722 CAAATAGGAC
8073732 TAATCCAACCTACAAATCTGAAATAAAA
1 TAATCCAACCTACAAATC-GAAATAAAA
* *
8073760 TAATCCAA-CTATCCAATCGGAATAAA
1 TAATCCAACCTA-CAAATCGAAATAAA
8073786 GTAAACGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (27 bp):
TAATCCAACCTACAAATCGAAATAAAA
Found at i:8078765 original size:6 final size:6
Alignment explanation
Indices: 8078754--8078780 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8078744 GGCTCGTGAT
8078754 CCAATA CCAATA CCAATA CCAATA CCA
1 CCAATA CCAATA CCAATA CCAATA CCA
8078781 TCTGTCCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (6 bp):
CCAATA
Found at i:8080291 original size:25 final size:24
Alignment explanation
Indices: 8080241--8080293 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
8080231 ATACAAATTG
*
8080241 AAAAAATATTAATATTTGATTACA
1 AAAAAATATTAATATTTAATTACA
*
8080265 AAAAAATTATT-ATATTTAAATTTCA
1 AAAAAA-TATTAATATTT-AATTACA
8080290 AAAA
1 AAAA
8080294 TCTTTTGCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (24 bp):
AAAAAATATTAATATTTAATTACA
Found at i:8080442 original size:28 final size:28
Alignment explanation
Indices: 8080375--8080462 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 28
8080365 AATCTCAAAA
**
8080375 TTATACATGAATTTTAGTTTAATGTGTAATT
1 TTATACATGAATTTTA-TTT--TGTACAATT
* *
8080406 CTCTACATGAATTTTATTTTGTACAATT
1 TTATACATGAATTTTATTTTGTACAATT
* *
8080434 TTATACATGAAATTTTATTTGGTCCAATT
1 TTATACATG-AATTTTATTTTGTACAATT
8080463 CTCAAAAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 14 0.29
29 17 0.35
30 3 0.06
31 14 0.29
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (28 bp):
TTATACATGAATTTTATTTTGTACAATT
Found at i:8081426 original size:22 final size:20
Alignment explanation
Indices: 8081400--8081448 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 20
8081390 CTTAATTAAT
8081400 ATTATATGTTAAAAATTATTTA
1 ATTATAT-TT-AAAATTATTTA
*
8081422 ATTATGATTTAAAATTTTTTA
1 ATTAT-ATTTAAAATTATTTA
8081443 ATTATA
1 ATTATA
8081449 ATATTTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 15 0.60
22 7 0.28
23 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (20 bp):
ATTATATTTAAAATTATTTA
Found at i:8081977 original size:31 final size:31
Alignment explanation
Indices: 8081942--8082000 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
8081932 TTTTATTTTT
8081942 AATTTTCTTATTATTTTAAAGGCATTTGTTA
1 AATTTTCTTATTATTTTAAAGGCATTTGTTA
* *
8081973 AATTTTTTTATTATTTTAGAGGCATTTG
1 AATTTTCTTATTATTTTAAAGGCATTTG
8082001 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.56
Consensus pattern (31 bp):
AATTTTCTTATTATTTTAAAGGCATTTGTTA
Found at i:8082150 original size:10 final size:11
Alignment explanation
Indices: 8082124--8082152 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
8082114 TATATATATT
8082124 TAAAAATAATA
1 TAAAAATAATA
8082135 TAAAAATAATA
1 TAAAAATAATA
8082146 TAAAAAT
1 TAAAAAT
8082153 TATTACGGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:8086403 original size:3 final size:3
Alignment explanation
Indices: 8086397--8086498 Score: 86
Period size: 3 Copynumber: 34.3 Consensus size: 3
8086387 TATTATTGGG
*
8086397 ATT ATT ATT ATT ATT ATTT ATT ACT ATT ATT ATT -TCT ACTT -TT ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * * *
8086443 ATT GTT ACT ACT A-T ATT ATT GTT ATT GTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
8086490 -TT TTT ATT A
1 ATT ATT ATT A
8086499 GTATATGTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
2 7 0.09
3 70 0.85
4 4 0.05
5 1 0.01
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8086441 original size:15 final size:16
Alignment explanation
Indices: 8086405--8086462 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
8086395 GGATTATTAT
*
8086405 TATTATTATTTATTAC
1 TATTATTATTTACTAC
8086421 TATTATTATTT-CTAC
1 TATTATTATTTACTAC
*
8086436 TTTTATTATTGTTACTAC
1 TATTATTA-T-TTACTAC
8086454 TA-TATTATT
1 TATTATTATT
8086463 GTTATTGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
15 11 0.31
16 13 0.36
17 7 0.19
18 5 0.14
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.62
Consensus pattern (16 bp):
TATTATTATTTACTAC
Found at i:8086511 original size:15 final size:14
Alignment explanation
Indices: 8086491--8086529 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
8086481 ATTATTATTT
*
8086491 TTTTATTAGTATATG
1 TTTTATTA-TACATG
8086506 TTTTATTATACATG
1 TTTTATTATACATG
8086520 TATTTATTAT
1 T-TTTATTAT
8086530 TATTTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (14 bp):
TTTTATTATACATG
Found at i:8086748 original size:3 final size:3
Alignment explanation
Indices: 8086742--8086790 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
8086732 TTATTTGACA
* * *
8086742 TAT TAT TGT TAT CAT TAT TAT TTT TA- TAT TAT TAT TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8086788 TAT
1 TAT
8086791 ATTTAGTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8086777 original size:17 final size:17
Alignment explanation
Indices: 8086755--8086790 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8086745 TATTGTTATC
*
8086755 ATTATTATTTTTATATT
1 ATTATTATTATTATATT
8086772 ATTATTATTATTATATT
1 ATTATTATTATTATATT
8086789 AT
1 AT
8086791 ATTTAGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTATTATTATTATATT
Found at i:8086848 original size:3 final size:3
Alignment explanation
Indices: 8086840--8086865 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8086830 TATATGCACA
8086840 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
8086866 GTACTAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8086979 original size:11 final size:10
Alignment explanation
Indices: 8086963--8087047 Score: 62
Period size: 11 Copynumber: 7.5 Consensus size: 10
8086953 TCATGTCTAA
8086963 TATATATGTTT
1 TATATAT-TTT
8086974 TATATATATTAT
1 TATATAT-TT-T
8086986 GTATATATTTT
1 -TATATATTTT
*
8086997 TAATATTATTGT
1 T-ATA-TATTTT
8087009 TATATATTTT
1 TATATATTTT
*
8087019 TATACTATTCCATG
1 TATA-TATT---TT
8087033 TATATATTTT
1 TATATATTTT
8087043 TATAT
1 TATAT
8087048 CATCTTATGC
Statistics
Matches: 61, Mismatches: 5, Indels: 17
0.73 0.06 0.20
Matches are distributed among these distances:
10 16 0.26
11 20 0.33
12 9 0.15
13 11 0.18
14 5 0.08
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (10 bp):
TATATATTTT
Found at i:8086990 original size:22 final size:21
Alignment explanation
Indices: 8086965--8087047 Score: 96
Period size: 22 Copynumber: 3.7 Consensus size: 21
8086955 ATGTCTAATA
*
8086965 TATATGTTTTATATATATTATG
1 TATATATTTT-TATATATTATG
8086987 TATATATTTTTA-ATATTATTG
1 TATATATTTTTATATATTA-TG
8087008 TTATATATTTTTATACTATTCCATG
1 -TATATATTTTTATA-TATT--ATG
8087033 TATATATTTTTATAT
1 TATATATTTTTATAT
8087048 CATCTTATGC
Statistics
Matches: 54, Mismatches: 1, Indels: 11
0.82 0.02 0.17
Matches are distributed among these distances:
20 6 0.11
21 4 0.07
22 21 0.39
23 2 0.04
24 18 0.33
25 2 0.04
26 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (21 bp):
TATATATTTTTATATATTATG
Found at i:8086991 original size:24 final size:23
Alignment explanation
Indices: 8086963--8087064 Score: 102
Period size: 24 Copynumber: 4.3 Consensus size: 23
8086953 TCATGTCTAA
8086963 TATATATGTTTTATATATATTATG
1 TATATAT-TTTTATATATATTATG
*
8086987 TATATATTTTTA-ATATTATTGT-
1 TATATATTTTTATATA-TATTATG
*
8087009 TATATATTTTTATACTAT-TCCATG
1 TATATATTTTTATA-TATAT-TATG
*
8087033 TATATATTTTTATATCATCTTATG
1 TATATATTTTTATAT-ATATTATG
*
8087057 CATATATT
1 TATATATT
8087065 CTTAAACACT
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
22 16 0.24
23 14 0.21
24 35 0.53
25 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (23 bp):
TATATATTTTTATATATATTATG
Found at i:8087185 original size:40 final size:39
Alignment explanation
Indices: 8087116--8087197 Score: 94
Period size: 40 Copynumber: 2.1 Consensus size: 39
8087106 TGTGTTATAT
* * *
8087116 TATTATTACATTATTTTATTCCTATTATATTTATATTAA
1 TATTAGTACATTATTTTATTCCTAGTATATATATATTAA
* *
8087155 TATTAGTACATATATTTTATTACGT-GTATATATATATTTA
1 TATTAGTACAT-TATTTTATT-CCTAGTATATATATATTAA
8087195 TAT
1 TAT
8087198 ATAATATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 10 0.28
40 24 0.67
41 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (39 bp):
TATTAGTACATTATTTTATTCCTAGTATATATATATTAA
Found at i:8087332 original size:21 final size:20
Alignment explanation
Indices: 8087261--8087331 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
8087251 TATTGCCATA
8087261 TTAT-TTATTTTAAT-TATT
1 TTATATTATTTTAATATATT
*
8087279 ATATATTTATTTTCAATATATAT
1 TTATA-TTATTTT-AATATAT-T
* *
8087302 GTACA-TATTATTAATATATT
1 TTATATTATT-TTAATATATT
8087322 TTATATTATT
1 TTATATTATT
8087332 AAATTTATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
18 3 0.07
20 11 0.27
21 18 0.44
22 5 0.12
23 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (20 bp):
TTATATTATTTTAATATATT
Found at i:8087382 original size:13 final size:13
Alignment explanation
Indices: 8087364--8087394 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8087354 ACGTTCATTT
8087364 TATATATTATATA
1 TATATATTATATA
*
8087377 TATATATTGTATA
1 TATATATTATATA
8087390 TATAT
1 TATAT
8087395 TCTAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (13 bp):
TATATATTATATA
Found at i:8090110 original size:16 final size:16
Alignment explanation
Indices: 8090089--8090188 Score: 164
Period size: 16 Copynumber: 6.2 Consensus size: 16
8090079 TTTGGTTCGC
8090089 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8090105 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
8090121 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
8090137 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
*
8090153 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
8090169 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
8090185 TGTA
1 TGTA
8090189 ATAGCAAATC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 77 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:8090228 original size:45 final size:41
Alignment explanation
Indices: 8090169--8090278 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
8090159 GGATTAGAGG
*
8090169 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
8090211 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
8090254 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
8090279 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:8090441 original size:16 final size:16
Alignment explanation
Indices: 8090404--8090445 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8090394 TTAATCATAT
*
8090404 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
8090420 TT-AAATATATTATAA
1 TTAAAATATATTATAA
8090435 TTAAAATATAT
1 TTAAAATATAT
8090446 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:8090452 original size:14 final size:15
Alignment explanation
Indices: 8090413--8090454 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8090403 TTTAAACATA
*
8090413 ATTATTATTAAATAT
1 ATTATAATTAAATAT
8090428 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
8090442 A-TATAATTTAATA
1 ATTATAATTAAATA
8090455 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:8090504 original size:61 final size:61
Alignment explanation
Indices: 8090439--8090626 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
8090429 TTATAATTAA
8090439 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
8090500 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
8090559 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
8090620 AATATAT
1 AATATAT
8090627 GATACTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 24 0.25
61 37 0.38
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:8090552 original size:120 final size:120
Alignment explanation
Indices: 8090407--8090636 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
8090397 ATCATATTTA
8090407 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
8090472 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
8090527 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
8090592 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
8090637 TTTACTCAAA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:8090572 original size:14 final size:15
Alignment explanation
Indices: 8090523--8090574 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8090513 ATAAAATATA
8090523 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
8090538 TATTAAATATATTAT
1 AATTAAATATATTAT
8090553 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
8090566 AATTTAATA
1 AATTAAATA
8090575 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:8090625 original size:59 final size:59
Alignment explanation
Indices: 8090442--8090625 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
8090432 TAATTAAAAT
8090442 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
8090501 ATAT-ATGATACTATAAAA-TATAAATTAA-CATAATTATTATTAAAT-ATATTATAATTAAA--
1 ATATAAT-TTA--ATAAAATTCTTAA-TAATC--AA-TATTCTTATATGA-ATT-TACTCAAATC
8090560 AT-
57 ATA
8090562 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
8090621 ATATA
1 ATATA
8090626 TGATACTATA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 7 0.07
59 20 0.21
60 10 0.11
61 15 0.16
62 7 0.07
63 12 0.13
64 6 0.06
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
Found at i:8099913 original size:50 final size:51
Alignment explanation
Indices: 8099836--8099964 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
8099826 GACCATGGCA
* * * *
8099836 ACAAGTGATAAGTGATAGATTCGGCTACACTTATCTGATCTAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
8099887 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
8099937 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
8099965 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 45 0.65
51 24 0.35
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:8099978 original size:31 final size:31
Alignment explanation
Indices: 8099940--8100086 Score: 213
Period size: 31 Copynumber: 4.7 Consensus size: 31
8099930 ACAAATGACA
8099940 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8099971 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
8100002 AGTGAAAAATGATAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
8100033 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8100064 AGTGAATAGTGGTAGCTTCGGCT
1 AGTGAAAAGTGGTAGCTTCGGCT
8100087 GCAAGTGACA
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8100182 original size:47 final size:46
Alignment explanation
Indices: 8100108--8100229 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 46
8100098 GTGATTTCTG
* * *
8100108 TATAGGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATAC-A
* * * *
8100155 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACA
* * *
8100201 TGTAAGACCATAGCTGGGCTATGGCATCG
1 TATAAGACCATATCTGGGATATGGCATCG
8100230 ATATGTGATA
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
46 25 0.39
47 39 0.61
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACA
Found at i:8100224 original size:46 final size:49
Alignment explanation
Indices: 8100157--8100282 Score: 177
Period size: 49 Copynumber: 2.6 Consensus size: 49
8100147 TGCTACTATA
* * *
8100157 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
*
8100203 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
* *
8100252 TAAGATCATAGCTGGGCTATGACATCGATAT
1 TAAGACCATAGCTGGGCTATGGCATCGATAT
8100283 ATGAAGATGT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
46 24 0.34
47 1 0.01
48 13 0.18
49 33 0.46
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
Found at i:8106298 original size:13 final size:13
Alignment explanation
Indices: 8106282--8106316 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8106272 TGCTGTGGAA
8106282 AAGTACTTTTGAG
1 AAGTACTTTTGAG
8106295 AAGTACTTTTGAG
1 AAGTACTTTTGAG
*
8106308 AAGTGCTTT
1 AAGTACTTT
8106317 GGAAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (13 bp):
AAGTACTTTTGAG
Found at i:8110389 original size:7 final size:7
Alignment explanation
Indices: 8110377--8110410 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
8110367 AAAATATGAT
8110377 TAGAAAC
1 TAGAAAC
8110384 TAGAAAC
1 TAGAAAC
8110391 TAGAAAC
1 TAGAAAC
8110398 TAGAAAC
1 TAGAAAC
8110405 TA-AAAC
1 TAGAAAC
8110411 CATCCTTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.15
7 23 0.85
ACGTcount: A:0.59, C:0.15, G:0.12, T:0.15
Consensus pattern (7 bp):
TAGAAAC
Found at i:8118371 original size:19 final size:19
Alignment explanation
Indices: 8118347--8118385 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8118337 ATTTTTGAAA
8118347 CCGGGATAGCTTAATCTAT
1 CCGGGATAGCTTAATCTAT
8118366 CCGGGATAGCTTAATCTAT
1 CCGGGATAGCTTAATCTAT
8118385 C
1 C
8118386 TATTTGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (19 bp):
CCGGGATAGCTTAATCTAT
Found at i:8121262 original size:22 final size:23
Alignment explanation
Indices: 8121237--8121290 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
8121227 AGTATAAAGG
8121237 ATATATATAGACATGAACTAA-A
1 ATATATATAGACATGAACTAACA
* * * *
8121259 ATATGTGTATACATGAATTAACA
1 ATATATATAGACATGAACTAACA
*
8121282 AAATATATA
1 ATATATATA
8121291 AAGTATATTT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.31
Consensus pattern (23 bp):
ATATATATAGACATGAACTAACA
Found at i:8121727 original size:3 final size:3
Alignment explanation
Indices: 8121719--8121768 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
8121709 AATAAATAGG
* * *
8121719 TAA TAA TAA TAA TAG TAG TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8121767 TA
1 TA
8121769 TGACTAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8122844 original size:15 final size:16
Alignment explanation
Indices: 8122818--8122847 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8122808 TAGTGTTTAG
8122818 GTGGGTTATTGGGTTT
1 GTGGGTTATTGGGTTT
8122834 GTGGG-TATTGGGTT
1 GTGGGTTATTGGGTT
8122848 CTTTGTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.07, C:0.00, G:0.47, T:0.47
Consensus pattern (16 bp):
GTGGGTTATTGGGTTT
Found at i:8123263 original size:43 final size:43
Alignment explanation
Indices: 8123177--8123496 Score: 219
Period size: 43 Copynumber: 7.4 Consensus size: 43
8123167 CTCTACTGCC
* * * * * *
8123177 ACTTCAGAGAGATAAGATTCTTTATTTTAATCCGCTCCACTGTA
1 ACTTCAGGGAGATAAGATTATGT-CTTTAATCTGCTCCGCTGTA
* *
8123221 ACTTCAGGGAGATAGGATTATGTCTTTAATCTACTCCGCTGTA
1 ACTTCAGGGAGATAAGATTATGTCTTTAATCTGCTCCGCTGTA
*
8123264 ACCTCAGGGAGAT-AGATTATGTCTTTAATCTGCTCCGCTGTA
1 ACTTCAGGGAGATAAGATTATGTCTTTAATCTGCTCCGCTGTA
* * * *
8123306 ACCTCAGGGAGATAAGATCTGCAAT-TC-TCAGTCTACTCCGCTGTA
1 ACTTCAGGGAGATAAGAT-T---ATGTCTTTAATCTGCTCCGCTGTA
* * * * **
8123351 A-TCTCAGGGAAATAAGACCTGATG-C---GATCTACTCTACTGTA
1 ACT-TCAGGGAGATAAGA--TTATGTCTTTAATCTGCTCCGCTGTA
* * * * *
8123392 ACTTCAGAGAGATAAGATCCTTTAT-TTTAATCCGCTCCACTGTA
1 ACTTCAGGGAGATAAGAT--TATGTCTTTAATCTGCTCCGCTGTA
* * * *
8123436 ACTTTAGGGAGATAGGATTATGTCTGTAATCTGCTCCGCTATA
1 ACTTCAGGGAGATAAGATTATGTCTTTAATCTGCTCCGCTGTA
8123479 A-TCTCAGGGAGATAAGAT
1 ACT-TCAGGGAGATAAGAT
8123497 CTGAAATTCT
Statistics
Matches: 217, Mismatches: 41, Indels: 37
0.74 0.14 0.13
Matches are distributed among these distances:
39 1 0.00
41 26 0.12
42 45 0.21
43 64 0.29
44 47 0.22
45 29 0.13
46 2 0.01
47 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTTCAGGGAGATAAGATTATGTCTTTAATCTGCTCCGCTGTA
Found at i:8123307 original size:85 final size:85
Alignment explanation
Indices: 8123202--8123498 Score: 241
Period size: 85 Copynumber: 3.5 Consensus size: 85
8123192 GATTCTTTAT
* *
8123202 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TATGTCTTTAATCTACTCCGCTGTAAC
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTAT-TCTTTAATCTACTCCGCTGTAAC
8123266 CTCAGGGAGATAGATTATGTC
65 CTCAGGGAGATAGATTATGTC
* * * *
8123287 TTTAATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGCAATTC-TCAGTCTACTCCGCTGTA
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATCT---ATTCTTTAATCTACTCCGCTGTA
* * *
8123351 ATCTCAGGGAAATAAGACCTGATG-C
63 ACCTCAGGGAGAT-AGA--TTATGTC
* * * * * ** *
8123376 ---GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAA
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGAT-CTATT-CTTTAATCTACTCCGCTGTAA
* *
8123437 CTTTAGGGAGATAGGATTATGTC
64 CCTCAGGGAGATA-GATTATGTC
* * *
8123460 TGTAATCTGCTCCGCTATAA-TCTCAGGGAGATAAGATCT
1 TTTAATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCT
8123499 GAAATTCTTC
Statistics
Matches: 164, Mismatches: 32, Indels: 31
0.72 0.14 0.14
Matches are distributed among these distances:
83 6 0.04
84 2 0.01
85 57 0.35
86 32 0.20
87 55 0.34
88 5 0.03
89 3 0.02
90 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (85 bp):
TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTATTCTTTAATCTACTCCGCTGTAACC
TCAGGGAGATAGATTATGTC
Done.