Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 32 of 253
Found at i:8373319 original size:41 final size:41
Alignment explanation
Indices: 8373274--8373356 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
8373264 TTGCCGCCCC
8373274 TACGTCTCAATTTTCTCCCATACTCTTCTTCTTTCTTACAT
1 TACGTCTCAATTTTCTCCCATACTCTTCTTCTTTCTTACAT
8373315 TACGTCTCAATTTTCTCCCATACTCTTCTTCTTTCTTACAT
1 TACGTCTCAATTTTCTCCCATACTCTTCTTCTTTCTTACAT
8373356 T
1 T
8373357 GTTGTTGCCG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.17, C:0.31, G:0.02, T:0.49
Consensus pattern (41 bp):
TACGTCTCAATTTTCTCCCATACTCTTCTTCTTTCTTACAT
Found at i:8374565 original size:15 final size:15
Alignment explanation
Indices: 8374547--8374579 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
8374537 TTTGTATGTC
8374547 TATACATTGTTTACA
1 TATACATTGTTTACA
8374562 TATACATTGTTTACA
1 TATACATTGTTTACA
8374577 TAT
1 TAT
8374580 GTTTAGACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (15 bp):
TATACATTGTTTACA
Found at i:8377619 original size:14 final size:14
Alignment explanation
Indices: 8377600--8377638 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
8377590 CGGTAAACCC
*
8377600 TAAACCCTTAATCT
1 TAAACCCTAAATCT
*
8377614 TAAACCCTAAATTT
1 TAAACCCTAAATCT
8377628 TAAACCCTAAA
1 TAAACCCTAAA
8377639 CCAAAGTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAACCCTAAATCT
Found at i:8379927 original size:20 final size:20
Alignment explanation
Indices: 8379902--8379958 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
8379892 TATGATAATT
8379902 TTTATAATTTTTTTACGAAA
1 TTTATAATTTTTTTACGAAA
* **
8379922 TTTAT-ATTTCTTTAC-ATT
1 TTTATAATTTTTTTACGAAA
*
8379940 TTGTATAATTTTCTTACGA
1 TT-TATAATTTTTTTACGA
8379959 CTTTATAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.10
19 12 0.41
20 13 0.45
21 1 0.03
ACGTcount: A:0.28, C:0.09, G:0.05, T:0.58
Consensus pattern (20 bp):
TTTATAATTTTTTTACGAAA
Found at i:8380019 original size:19 final size:19
Alignment explanation
Indices: 8379899--8380038 Score: 78
Period size: 19 Copynumber: 7.3 Consensus size: 19
8379889 TGGTATGATA
8379899 ATTTTTATAATTTTTTTACG
1 ATTTTTATAA-TTTTTTACG
**
8379919 AAATTTAT-ATTTCTTTAC-
1 ATTTTTATAATTT-TTTACG
8379937 ATTTTGTATAATTTTCTTACG
1 ATTTT-TATAATTTT-TTACG
* *
8379958 ACTTTATAAAATTTTATTA--
1 A-TTTTTATAATTTT-TTACG
* *
8379977 ATTTTT-T-ATATTTCTA-T
1 ATTTTTATAAT-TTTTTACG
8379994 ATATTTTATAATTTTTTACG
1 AT-TTTTATAATTTTTTACG
** *
8380014 ATTTTTATAAAATTTTACA
1 ATTTTTATAATTTTTTACG
8380033 ATTTTT
1 ATTTTT
8380039 TTATTGTTAA
Statistics
Matches: 93, Mismatches: 15, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
16 4 0.04
17 5 0.05
18 14 0.15
19 37 0.40
20 18 0.19
21 12 0.13
22 3 0.03
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (19 bp):
ATTTTTATAATTTTTTACG
Found at i:8380021 original size:57 final size:58
Alignment explanation
Indices: 8379922--8380043 Score: 162
Period size: 57 Copynumber: 2.1 Consensus size: 58
8379912 TTTTACGAAA
* *
8379922 TTTATATTTCTTTACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTATTAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTA-CAATTT
* *
8379981 TTTATATTTCTATATA-TTT-TATAATTTT-TTACGATTTTTATAAAATTTTACAATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGA-CTTTATAAAATTTTACAATTT
8380037 TTT-TATT
1 TTTATATT
8380044 GTTAATACAT
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
55 4 0.07
56 14 0.24
57 23 0.40
58 3 0.05
59 14 0.24
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (58 bp):
TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTACAATTT
Found at i:8380294 original size:90 final size:89
Alignment explanation
Indices: 8380137--8380362 Score: 298
Period size: 92 Copynumber: 2.5 Consensus size: 89
8380127 TTTAATAAAG
* *
8380137 GTAGGGCCTTAATTGCTTTTCTTTGAAAAATTTAAGGGTCTTTTT-GATGCATTTTGAAAGTTAA
1 GTAGGGGCTTAATTGCTTTT-TTTGAAAAATTTGAGGG-CTTTTTGGATGCATTTTGAAAGTTAA
* *
8380201 AGTACTCAATTGAGTGC-AAAAAAAA
64 AGTACCCAAATGAGTGCAAAAAAAAA
*
8380226 GTAGGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCTTTTTGGTATGCATTTTGAAAG-TAC
1 GTAGGGGCTTAATTGCTTTTTTTGAAAA-ATTTGAGGGCTTTTTGG-ATGCATTTTGAAAGTTA-
8380290 AAGTACCCAAATGAGTGCAAAAAAAAAA
63 AAGTACCCAAATGAGTGC-AAAAAAAAA
*
8380318 GCAGGGGCTTAATTG-TATTTTTTGAAAAAATTTGAGGGCTTTTTG
1 GTAGGGGCTTAATTGCT-TTTTTTG-AAAAATTTGAGGGCTTTTTG
8380363 CACCCTTAAG
Statistics
Matches: 122, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
88 14 0.11
89 29 0.24
90 30 0.25
91 1 0.01
92 44 0.36
93 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (89 bp):
GTAGGGGCTTAATTGCTTTTTTTGAAAAATTTGAGGGCTTTTTGGATGCATTTTGAAAGTTAAAG
TACCCAAATGAGTGCAAAAAAAAA
Found at i:8381527 original size:19 final size:18
Alignment explanation
Indices: 8381503--8381538 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
8381493 GCATATATAC
8381503 ATAAAAATATAATAAAAAT
1 ATAAAAATA-AATAAAAAT
8381522 ATAAAAATAAATAAAAA
1 ATAAAAATAAATAAAAA
8381539 GCAAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAAAAATAAATAAAAAT
Found at i:8381546 original size:19 final size:19
Alignment explanation
Indices: 8381505--8381547 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8381495 ATATATACAT
* *
8381505 AAAAATATAATAAAAATAT
1 AAAAATATAATAAAAACAA
8381524 AAAAATA-AATAAAAAGCAA
1 AAAAATATAATAAAAA-CAA
8381543 AAAAA
1 AAAAA
8381548 ATAGAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (19 bp):
AAAAATATAATAAAAACAA
Found at i:8382178 original size:21 final size:23
Alignment explanation
Indices: 8382137--8382196 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 23
8382127 TTTTTACATA
8382137 TTATTAATATTATTACTATTATTT
1 TTATTAATATTATTAC-ATTATTT
8382161 TTATTAATA-TATTA-ATTATTT
1 TTATTAATATTATTACATTATTT
8382182 TTA--AAGTATTATTAC
1 TTATTAA-TATTATTAC
8382197 TACTAATGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 15 0.45
23 5 0.15
24 9 0.27
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTAATATTATTACATTATTT
Found at i:8382276 original size:16 final size:15
Alignment explanation
Indices: 8382251--8382284 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8382241 AATATATGTG
8382251 TATTATACATGTATA
1 TATTATACATGTATA
*
8382266 TATTCATACATTTATA
1 TATT-ATACATGTATA
8382282 TAT
1 TAT
8382285 AGTACTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (15 bp):
TATTATACATGTATA
Found at i:8382681 original size:19 final size:21
Alignment explanation
Indices: 8382640--8382687 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
8382630 TTAAAATTTT
8382640 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
8382661 AA-TAAAAAT-TTATAATCAA
1 AACTAAAAATATTAAAATAAA
8382680 AACTAAAA
1 AACTAAAA
8382688 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:8386123 original size:6 final size:6
Alignment explanation
Indices: 8386114--8386156 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
8386104 TTTCAAAACC
* *
8386114 AAAGGG AAAGGG AAAGGG AAAGAG AAAGGG AAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
8386157 TCGTATGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:8386414 original size:20 final size:20
Alignment explanation
Indices: 8386390--8386434 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
8386380 TTTATATTTC
8386390 ATTTTTATTTA-TTATCAAT
1 ATTTTTATTTATTTATCAAT
8386409 ATTTTTATTTATTTATCAAT
1 ATTTTTATTTATTTATCAAT
8386429 ATTTTT
1 ATTTTT
8386435 TTAAAATCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTTTATTTATTTATCAAT
Found at i:8387081 original size:46 final size:47
Alignment explanation
Indices: 8387016--8387146 Score: 147
Period size: 46 Copynumber: 2.7 Consensus size: 47
8387006 CCATATGATG
* * * *
8387016 TTTTTGGGGTTTAGGGTTTTAGGGATTATAGATTAGTGTTTA-GGGT
1 TTTTTTGGGTTTAGGGTTTTAGGGATTATAGACTAGTGTCTATGAGT
* *
8387062 TTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTCTATGATT
1 TTTTTTGGGTTTAGGGTTTTAGG-GAT-TATAGACTAGTGTCTATGAGT
* *
8387111 TTTTTTGGGGTTTAAGGTTTTAGGGGTTATATGACT
1 TTTTTT-GGGTTTAGGGTTTTAGGGATTATA-GACT
8387147 TTTAGCGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
46 22 0.31
47 2 0.03
48 18 0.25
49 14 0.19
50 16 0.22
ACGTcount: A:0.18, C:0.02, G:0.31, T:0.49
Consensus pattern (47 bp):
TTTTTTGGGTTTAGGGTTTTAGGGATTATAGACTAGTGTCTATGAGT
Found at i:8387239 original size:81 final size:80
Alignment explanation
Indices: 8387146--8387297 Score: 277
Period size: 81 Copynumber: 1.9 Consensus size: 80
8387136 GTTATATGAC
*
8387146 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTTTTTTAGCGGCGCTTCGCCAAAAAC
1 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTG-TTTTTAGCGGCGCTTCACCAAAAAC
8387211 GCCGCTATTGCTATGT
65 GCCGCTATTGCTATGT
*
8387227 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCGCTTTACCAAAAACG
1 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCGCTTCACCAAAAACG
8387292 CCGCTA
66 CCGCTA
8387298 ATGTATAATT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
80 30 0.43
81 39 0.57
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (80 bp):
TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCGCTTCACCAAAAACG
CCGCTATTGCTATGT
Found at i:8387246 original size:40 final size:40
Alignment explanation
Indices: 8387146--8387297 Score: 268
Period size: 40 Copynumber: 3.8 Consensus size: 40
8387136 GTTATATGAC
8387146 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTT
1 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTG-T
* *
8387187 TTTTAGCGGCGCTTCGCCAAAAACGCCGCTATTGCTATGT
1 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGT
8387227 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGT
*
8387267 TTTTAGCGGCGCTTTACCAAAAACGCCGCTA
1 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTA
8387298 ATGTATAATT
Statistics
Matches: 106, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 69 0.65
41 37 0.35
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGT
Found at i:8395406 original size:14 final size:13
Alignment explanation
Indices: 8395387--8395422 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
8395377 TGTCGAGGTA
8395387 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
8395400 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
8395414 TTTTCAAAA
1 TTTTCAAAA
8395423 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:8395480 original size:88 final size:88
Alignment explanation
Indices: 8395331--8395492 Score: 245
Period size: 88 Copynumber: 1.8 Consensus size: 88
8395321 TATTTTTCAA
* * *
8395331 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
8395396 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * *
8395419 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
8395483 TTCTGTTTTT
65 ATCTGTTTTT
8395493 TTAAAAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 1 0.02
88 65 0.98
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:8395574 original size:59 final size:59
Alignment explanation
Indices: 8395475--8395593 Score: 195
Period size: 59 Copynumber: 2.0 Consensus size: 59
8395465 TGCTGAGCTA
** *
8395475 TTTTCAATTTCTGTTTTTTTAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
8395534 TTTT-AATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTT-AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
8395593 T
1 T
8395594 CGGATTACAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
58 13 0.23
59 43 0.77
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (59 bp):
TTTTCAATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:8395646 original size:13 final size:14
Alignment explanation
Indices: 8395613--8395643 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8395603 TGTCGAGGTA
8395613 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
*
8395627 TTTTCAAATTCTGT
1 TTTTCAAAATCTGT
8395641 TTT
1 TTT
8395644 CAACAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:8395668 original size:88 final size:87
Alignment explanation
Indices: 8395558--8395769 Score: 388
Period size: 88 Copynumber: 2.4 Consensus size: 87
8395548 TTTCAAAAAA
8395558 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATTACATGTCGAGGTATTTTCAAAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATTACATGTCGAGGTATTTTCAAAAT
*
8395623 CTGTTTTTCAAATTCTGTTTTC
66 CTGTTTTTCAAATTCTATTTTC
*
8395645 AACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAA
1 AA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATTACATGTCGAGGTATTTTCAAAA
8395710 TCTGTTTTTCAAATTCTATTTTC
65 TCTGTTTTTCAAATTCTATTTTC
8395733 AAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
8395770 TGGCTCATGT
Statistics
Matches: 121, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
87 4 0.03
88 117 0.97
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (87 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATTACATGTCGAGGTATTTTCAAAAT
CTGTTTTTCAAATTCTATTTTC
Found at i:8395799 original size:314 final size:308
Alignment explanation
Indices: 8395325--8396033 Score: 1059
Period size: 314 Copynumber: 2.3 Consensus size: 308
8395315 AATTTATATT
8395325 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTT
*
8395390 TCAAAATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 TCAAAATCTGTTTTTCAAATTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
8395455 TTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTAAAAAAATTCAACTCATATTGCGAG
130 TTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTCTTTTAAAAAAATTCAACTCATATTGCGAG
* *
8395520 AGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
195 AGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAAAAAAA-C--C-CATATTGCGAAAGGTGA
* * *
8395585 GTTGAGCCTCGGATTACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGT-
256 GTTGAACCTC--A--ACACGCT-GAGGTATTTTCAAAATCTGTTCTTCAAATTCTGTG
*
8395641 TTTC-AACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTT
*
8395705 CAAAATCTGTTTTTCAAATTCTATTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 CAAAATCTGTTTTTCAAATTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
8395770 TGGCTCATGTGCTGAGCTATTTTCAATTTCTGTTCTTTTCAAAAAATTCAACTCATATTGCGAGA
131 TGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTCTTTTAAAAAAATTCAACTCATATTGCGAGA
8395835 GGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAAAAAAACCCATATTGCGAAAGGTGAGTTGA
196 GGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAAAAAAACCCATATTGCGAAAGGTGAGTTGA
* * * ** *
8395900 ACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTG
261 ACCTCAACACGCTGAGGTATTTTCAAAATCTGTTCTTCAAATTCTGTG
* * * *
8395948 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGGGCTGAGCCTCGGG--GCATGCCGAGGTATTT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTT
* ** *
8396011 TTAATTTCTGTTTTTCAATTTCT
65 TCAAAATCTGTTTTTCAAATTCT
8396034 GCTTTTAATT
Statistics
Matches: 363, Mismatches: 26, Indels: 17
0.89 0.06 0.04
Matches are distributed among these distances:
306 31 0.09
307 38 0.10
308 1 0.00
309 38 0.10
310 25 0.07
311 1 0.00
313 1 0.00
314 224 0.62
316 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (308 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTT
CAAAATCTGTTTTTCAAATTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
TGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTCTTTTAAAAAAATTCAACTCATATTGCGAGA
GGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAAAAAAACCCATATTGCGAAAGGTGAGTTGA
ACCTCAACACGCTGAGGTATTTTCAAAATCTGTTCTTCAAATTCTGTG
Found at i:8395803 original size:88 final size:86
Alignment explanation
Indices: 8395558--8395795 Score: 379
Period size: 88 Copynumber: 2.7 Consensus size: 86
8395548 TTTCAAAAAA
8395558 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATTACATGTCGAGGTATTTTCAAAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TTACATGTCGAGGTATTTTCAAAAT
*
8395623 CTGTTTTTCAAATTCTGTTTTC
65 CTGTTTTTCAAATTCTATTTTC
8395645 AACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAA
1 AA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTACATGTCGAGGTATTTTCAAAA
8395710 TCTGTTTTTCAAATTCTATTTTC
64 TCTGTTTTTCAAATTCTATTTTC
* * *
8395733 AAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT-CATGTGCTGAGCTATTTTCAA
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTACATGT-C-GAGGTATTTTCAA
8395796 TTTCTGTTCT
Statistics
Matches: 142, Mismatches: 4, Indels: 9
0.92 0.03 0.06
Matches are distributed among these distances:
86 5 0.04
87 8 0.06
88 127 0.89
89 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (86 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTACATGTCGAGGTATTTTCAAAATC
TGTTTTTCAAATTCTATTTTC
Found at i:8396052 original size:13 final size:13
Alignment explanation
Indices: 8396008--8396052 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
8395998 TGCCGAGGTA
8396008 TTTTTAATTTCTG
1 TTTTTAATTTCTG
8396021 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
8396035 CTTTTAATTTCTG
1 TTTTTAATTTCTG
8396048 TTTTT
1 TTTTT
8396053 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:8396097 original size:100 final size:100
Alignment explanation
Indices: 8395919--8396230 Score: 398
Period size: 100 Copynumber: 3.1 Consensus size: 100
8395909 CGCTGAGGTG
* * *
8395919 TTTTCCATTTCTG-TTCTTCAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGG
1 TTTTCAATTTCTGCTT-TT-AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAG
* * * *
8395983 CTGAGCCTCGGGGCATGCCGAGGTATTTTTAATTTCTGT
62 TTGAGCCTCAGGGCATGCTGAGGTATTTTCAATTTCTGT
8396022 TTTTCAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
8396087 GCCTCAGGGCACGCTGAGGTATTTTCAATTTCTAT
66 GCCTCAGGGCATGCTGAGGTATTTTCAATTTCTGT
* ** * *
8396122 TTTTCAATTTTTGCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTG-CTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
8396185 AGCCTCAGGACATGCTGAGGTATTTTCAATTT-TCGT
65 AGCCTCAGGGCATGCTGAGGTATTTTCAATTTCT-GT
*
8396221 TTTTTAATTT
1 TTTTCAATTT
8396231 ATGTTTCAAA
Statistics
Matches: 188, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
98 1 0.01
99 70 0.37
100 73 0.39
101 15 0.08
102 13 0.07
103 14 0.07
104 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (100 bp):
TTTTCAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGGCATGCTGAGGTATTTTCAATTTCTGT
Found at i:8396224 original size:99 final size:97
Alignment explanation
Indices: 8395956--8396314 Score: 389
Period size: 99 Copynumber: 3.8 Consensus size: 97
8395946 TGTTTCAAAA
* * * * * * *
8395956 AAATCAACTCATATTGCGAGAGGTGGGCTGAGCCTCGGGGCATGCCGAGGTATTTTTAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
* * *
8396021 TTTTTCAATTTCTGCTTTTAATTTCTGTTTTTC
66 TTTTTCAATTTATGCTTTCAAATTCTG-TTTTC
*
8396054 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 --AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
8396119 TATTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC
64 TGTTTTTCAATTTATG-CTTTCAAATTCTG-TTTTC
*
8396155 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTT-TC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT-
* *
8396219 GTTTTTTAATTTATG-TTTCAAA---------A
65 GTTTTTCAATTTATGCTTTCAAATTCTGTTTTC
* * * *
8396242 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
*
8396307 TCTTTCAA
66 TTTTTCAA
8396315 AAAAATCAAC
Statistics
Matches: 231, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
87 65 0.28
88 1 0.00
97 6 0.03
98 1 0.00
99 72 0.31
100 71 0.31
101 15 0.06
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (97 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAATTTATGCTTTCAAATTCTGTTTTC
Found at i:8396268 original size:87 final size:78
Alignment explanation
Indices: 8396228--8396512 Score: 284
Period size: 75 Copynumber: 3.9 Consensus size: 78
8396218 CGTTTTTTAA
* * * *
8396228 TTTATGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGT
1 TTTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
8396293 ATTTTCAA---TT
66 ATTTTCAATTTTT
* *
8396303 TTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
1 TTTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
8396368 AATTTCAA---TT
66 ATTTTCAATTTTT
* * ** *
8396378 TCTAT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGT
1 TTTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
* *
8396440 ATTGTCAATTTTC
66 ATTTTCAATTTTT
* * *
8396453 TGTA--TGT--------TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGT
1 TTTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
8396508 ATTTT
66 ATTTT
8396513 TTTAAAAAAA
Statistics
Matches: 185, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
68 48 0.26
72 56 0.30
74 6 0.03
75 75 0.41
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (78 bp):
TTTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTCAATTTTT
Found at i:8396345 original size:162 final size:143
Alignment explanation
Indices: 8396240--8397442 Score: 1129
Period size: 147 Copynumber: 8.3 Consensus size: 143
8396230 TATGTTTCAA
* * *
8396240 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTTT
* * *
8396305 -TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
66 CTGTATGT-----AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
*
8396369 ATTTCAATTTCTATTTTC
126 TTTTCAATTTCTATTTTC
* **
8396387 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTTT
*
8396452 CTGTATGT---TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA-TTT-
66 CTGTATGTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
**
8396512 --TTT-TA---AA
131 AATTTCTATTTTC
** * * *
8396519 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTTT
* * * *
8396584 -TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGCGGTA
66 CTGTATGT-----AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* *
8396648 ATTTCAATTTCTGTTTTC
126 TTTTCAATTTCTATTTTC
* *
8396666 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-TT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTGTCAATTT
* ** * * *
8396729 TCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTTT
65 TCTGTATGT--AAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
8396793 TTTCAATTTCTGTTTTC
127 TTTCAATTTCTATTTTC
** * * *
8396810 AAAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCA
1 -----AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCA
* * * *
8396875 ATTTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTG
61 ATTTTCTGTATGT-----AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
* *
8396939 AGGTAATTTCAATTTCTGTTTTC
121 AGGTATTTTCAATTTCTATTTTC
* *
8396962 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-TT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTGTCAATTT
* * ** * *
8397025 TCTGT-TTTCAAAATTCAAATCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
65 TCTGTATGT--AAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
8397089 TTTCAATTTCTGTTTTC
127 TTTCAATTTCTATTTTC
** * * * *
8397106 AAAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTTA
1 -----AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCA
* *** *
8397171 ATTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
61 A---TTTTCTGT-ATGTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
* *
8397236 GGTAATTTCAATTTCTGTTTTC
122 GGTATTTTCAATTTCTATTTTC
* *
8397258 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-TT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTGTCAATTT
* * ** * * *
8397321 TCTAT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAT
65 TCTGTATGT--AAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* *
8397385 TTTTAATTTCTGTTTTC
127 TTTCAATTTCTATTTTC
* **
8397402 AAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
1 ---AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
8397443 GGTTCACATG
Statistics
Matches: 889, Mismatches: 114, Indels: 106
0.80 0.10 0.10
Matches are distributed among these distances:
131 5 0.01
132 57 0.06
135 2 0.00
136 3 0.00
139 49 0.06
140 50 0.06
143 20 0.02
144 178 0.20
146 12 0.01
147 251 0.28
148 20 0.02
149 104 0.12
150 6 0.01
152 119 0.13
153 13 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (143 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTGTCAATTTT
CTGTATGTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTCTATTTTC
Found at i:8396427 original size:72 final size:72
Alignment explanation
Indices: 8396240--8397523 Score: 1448
Period size: 72 Copynumber: 17.6 Consensus size: 72
8396230 TATGTTTCAA
* * * * *
8396240 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8396305 TGTCTTTC
66 TGT-TTTC
*
8396313 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
*
8396378 TCTATTTTC
64 TCTGTTTTC
* ** *
8396387 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-TT
*
8396451 TCTGTATGT-
64 TCTGT-TTTC
*
8396460 -----TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGT-A--T---TTT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
***
8396513 T-TTAAA
66 TGTTTTC
* * * * *
8396519 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8396584 TGTCTTTC
66 TGT-TTTC
* *
8396592 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGCGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
8396657 TCTGTTTTC
64 TCTGTTTTC
* **
8396666 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8396731 TGTTTTC
66 TGTTTTC
* ** * * **
8396738 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTTTTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8396803 TGTTTTC
66 TGTTTTC
* * * *
8396810 AAAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCA
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
*
8396875 ATTTTTGTCTTTC
61 ATTTCTGT-TTTC
* *
8396888 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
8396953 TCTGTTTTC
64 TCTGTTTTC
* **
8396962 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8397027 TGTTTTC
66 TGTTTTC
* * ** * * *
8397034 AAAATTCAAATCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8397099 TGTTTTC
66 TGTTTTC
* * * * *
8397106 AAAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTTA
1 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
* *
8397171 ATTTTTTTCTTTC
61 ATTTCTGT-TTTC
*
8397184 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
8397249 TCTGTTTTC
64 TCTGTTTTC
* **
8397258 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
*
8397323 TATTTTC
66 TGTTTTC
* ** * * * * *
8397330 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
8397395 TGTTTTC
66 TGTTTTC
* * *
8397402 AAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTC
8397466 AATTTCTGTCTTTC
60 AATTTCTGT-TTTC
* * *
8397480 AAAAAAAAATCAACTAATATTGTGAGAGGTGAGTTGAGCTTCAG
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
8397524 ATCACACACT
Statistics
Matches: 1062, Mismatches: 106, Indels: 77
0.85 0.09 0.06
Matches are distributed among these distances:
58 1 0.00
59 1 0.00
60 1 0.00
61 3 0.00
64 44 0.04
65 1 0.00
67 1 0.00
68 45 0.04
70 3 0.00
71 4 0.00
72 458 0.43
73 7 0.01
74 19 0.02
75 282 0.27
77 141 0.13
78 12 0.01
79 38 0.04
80 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:8397050 original size:296 final size:296
Alignment explanation
Indices: 8396516--8397518 Score: 1798
Period size: 296 Copynumber: 3.4 Consensus size: 296
8396506 GTATTTTTTT
8396516 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAAT
*
8396581 TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGCGG
66 TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
8396646 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
131 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
8396711 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
196 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
8396776 AAGACACGTTGAGGTTTTTTCAATTTCTGTTTTCAA
261 AAGACACGTTGAGGTTTTTTCAATTTCTGTTTTCAA
8396812 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAAT
*
8396877 TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGG
66 TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
8396942 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
131 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
*
8397007 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAAATCATATTGCGAGAAATGAGTTGAGCCTC
196 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
8397072 AAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAA
261 AAGACACGTTGAGGTTTTTTCAATTTCTGTTTTCAA
*
8397108 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTTAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAAT
*
8397173 TTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
66 TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
8397238 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
131 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
*
8397303 GCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
196 GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
*
8397368 AAGATACGTTGAGGTATTTTT-AATTTCTGTTTTC--
261 AAGACACGTTGAGGT-TTTTTCAATTTCTGTTTTCAA
* * *
8397402 AAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAG---ACATGCTGAGGTATTTTC
* * *
8397466 AATTTCTGTCTTTCAAAAAAAAATCAACTAATATTGTGAGAGGTGAGTTGAGC
63 AATTTTTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
8397519 TTCAGATCAC
Statistics
Matches: 682, Mismatches: 19, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
293 1 0.00
294 39 0.06
296 603 0.88
297 4 0.01
298 35 0.05
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (296 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAAT
TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
AAGACACGTTGAGGTTTTTTCAATTTCTGTTTTCAA
Found at i:8397345 original size:592 final size:573
Alignment explanation
Indices: 8396221--8397518 Score: 2077
Period size: 592 Copynumber: 2.2 Consensus size: 573
8396211 CAATTTTCGT
* *
8396221 TTTTTAATTTATG-TTTC-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACA
1 TTTTTAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
8396284 CGTTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 TGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
8396349 CCTCGGGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATG
131 CCTCGGGACAAGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATG
* ** * *
8396414 AGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTTCTGTATGTTCAACTCATATTGCGAGAG
196 AGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTTCTGTAAATTCAAATCATATTGCGAGAA
* * *
8396479 GTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTTTAAAAAAAATCAACTCATATTGCGAGAGG
261 ATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTTTAAAAAAAATCAACTCATATTGCGAGAGG
8396544 TAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATA
326 TAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATA
*
8396609 TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGCGGTAATTTCAATTTCTGTTTTCAAAATTCA
391 TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCA
*
8396674 ACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCA
456 ACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTCA
8396739 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-
521 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
*
8396791 TTTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAG
1 TTTTT-AATTTCTGTTTTC--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
8396856 ACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
63 ACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
8396921 GAGCCTCGGGACAAGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAA
128 GAGCCTCGGGACAAGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAA
8396986 ATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-TTTCTGTTTTCAAAATTCAAATCATA
193 ATGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTTTCTG---T--AAATTCAAATCATA
*
8397049 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAA
252 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG-----T--A-TT-T-TTTT---AAAAAA
* *
8397114 AATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTTAATTTTTTT
304 AATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGT
8397179 CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
369 CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
8397244 CAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
434 CAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
*
8397309 GTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATA
499 GTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
8397374 CGTTGAGGTA
564 CGTTGAGGTA
* *
8397384 TTTTTAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTC
1 TTTTTAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---
* * *
8397448 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTAATATTGTGAGAGGTGAG
63 ACATGCTGAGGTATTTTCAATTTTTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAG
8397513 TTGAGC
126 TTGAGC
8397519 TTCAGATCAC
Statistics
Matches: 671, Mismatches: 27, Indels: 36
0.91 0.04 0.05
Matches are distributed among these distances:
570 5 0.01
571 7 0.01
572 4 0.01
574 6 0.01
575 199 0.30
576 3 0.00
577 1 0.00
579 43 0.06
584 1 0.00
586 1 0.00
587 2 0.00
588 1 0.00
589 5 0.01
590 39 0.06
592 314 0.47
593 5 0.01
594 35 0.05
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (573 bp):
TTTTTAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
TGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCGGGACAAGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATG
AGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTTCTGTAAATTCAAATCATATTGCGAGAA
ATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTTTAAAAAAAATCAACTCATATTGCGAGAGG
TAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATA
TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCA
ACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTCA
AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
Found at i:8398153 original size:463 final size:463
Alignment explanation
Indices: 8397612--8398602 Score: 1901
Period size: 463 Copynumber: 2.1 Consensus size: 463
8397602 TTTTAAATTG
*
8397612 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
8397677 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
8397742 TATTGCGAGAGGTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
131 TATTGCGAGAGGTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
8397807 TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGA
196 TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGA
*
8397872 GATGTGAGTTGAGCCTCAGATCACGCCGAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTT
261 GAGGTGAGTTGAGCCTCAGATCACGCCGAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTT
8397937 GAAAGAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGCCACGCGCTGAAGTATTTTTAG
326 GAAAGAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGCCACGCGCTGAAGTATTTTTAG
*
8398002 TTTATGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTGTTTC
391 TTTATGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGTTGTTTC
8398067 AAAAATCA
456 AAAAATCA
8398075 ACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
8398140 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
66 AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
8398205 TATTGCGAGAGGTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
131 TATTGCGAGAGGTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
8398270 TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGA
196 TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGA
8398335 GAGGTGAGTTGAGCCTCAGATCACGCCGAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTT
261 GAGGTGAGTTGAGCCTCAGATCACGCCGAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTT
8398400 GAAAGAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGCCACGCGCTGAAGTATTTTTAG
326 GAAAGAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGCCACGCGCTGAAGTATTTTTAG
8398465 TTTATGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGTTGTTTC
391 TTTATGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGTTGTTTC
8398530 AAAAATCA
456 AAAAATCA
* * *
8398538 ACTCATGTTGCGATAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATT
1 ACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTC---AAAATCAACTCATATT
8398603 ACGAGAGAGT
Statistics
Matches: 519, Mismatches: 6, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
463 503 0.97
466 16 0.03
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (463 bp):
ACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAACTCATATTGCT
AGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCA
TATTGCGAGAGGTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAAC
TCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGA
GAGGTGAGTTGAGCCTCAGATCACGCCGAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTT
GAAAGAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAAGCCACGCGCTGAAGTATTTTTAG
TTTATGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGTTGTTTC
AAAAATCA
Found at i:8398156 original size:53 final size:55
Alignment explanation
Indices: 8398006--8398149 Score: 238
Period size: 55 Copynumber: 2.7 Consensus size: 55
8397996 TTTTAGTTTA
8398006 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
* *
8398061 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
* *
8398116 T-TTTC-AAAATCAACTCATATTGCTAGAGGTGAGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGT
8398150 CGAGCCTCAG
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 27 0.32
54 4 0.05
55 54 0.64
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (55 bp):
TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGT
Found at i:8398540 original size:55 final size:55
Alignment explanation
Indices: 8398469--8398609 Score: 221
Period size: 55 Copynumber: 2.5 Consensus size: 55
8398459 TTTTAGTTTA
8398469 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGT
* *
8398524 TGTTTCAAAAATCAACTCATGTTGCGATAGGTGAGTTAAGCCTTTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGT
* *
8398579 T-TTTCAAAAAAATCAACTCATATTACGAGAG
1 TGTTTC--AAAAATCAACTCATGTTGCGAGAG
8398610 AGTCAATTCA
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 4 0.05
55 54 0.68
56 21 0.27
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (55 bp):
TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTCAAGCCTTTTAATTTCTGT
Found at i:8400385 original size:21 final size:21
Alignment explanation
Indices: 8400361--8400424 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
8400351 TTTTTTTACA
8400361 TATTATTAATATTATTACTAT
1 TATTATTAATATTATTACTAT
8400382 TATTTTTATTAATA-TATTA--AT
1 TA---TTATTAATATTATTACTAT
*
8400403 TATTTTTAAAGTATTATTACTA
1 TATTATT-AA-TATTATTACTA
8400425 CTAATGATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
18 4 0.12
19 2 0.06
20 2 0.06
21 11 0.32
23 6 0.18
24 9 0.26
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTATTAATATTATTACTAT
Found at i:8400713 original size:12 final size:12
Alignment explanation
Indices: 8400698--8400817 Score: 54
Period size: 11 Copynumber: 9.7 Consensus size: 12
8400688 AATATTATAT
8400698 TTATATATATTA
1 TTATATATATTA
8400710 TTATATATATT-
1 TTATATATATTA
8400721 TTA-ATATTATTA
1 TTATATA-TATTA
* *
8400733 GTTATAT-TTTTC
1 -TTATATATATTA
* *
8400745 TTTTATACTACTA
1 TTATATA-TATTA
* *
8400758 TATATATCTAATA
1 T-TATATATATTA
8400771 TTATATGGTATATT-
1 TTATA---TATATTA
8400785 TCTA-ATACTATTA
1 T-TATATA-TATTA
8400798 TTTATATATATT-
1 -TTATATATATTA
8400810 TTATATAT
1 TTATATAT
8400818 GTGTGTATGT
Statistics
Matches: 82, Mismatches: 11, Indels: 31
0.66 0.09 0.25
Matches are distributed among these distances:
10 3 0.04
11 22 0.27
12 22 0.27
13 17 0.21
14 12 0.15
15 6 0.07
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (12 bp):
TTATATATATTA
Found at i:8400727 original size:20 final size:21
Alignment explanation
Indices: 8400692--8400742 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
8400682 GTTTTTAATA
8400692 TTATATTTATATATATTATTA-
1 TTATATTT-TATATATTATTAG
8400713 TATATATTTTA-ATATTATTAG
1 T-TATATTTTATATATTATTAG
8400734 TTATATTTT
1 TTATATTTT
8400743 TCTTTTATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 17 0.61
21 4 0.14
22 7 0.25
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATATTTTATATATTATTAG
Found at i:8400803 original size:21 final size:21
Alignment explanation
Indices: 8400692--8400804 Score: 70
Period size: 21 Copynumber: 5.3 Consensus size: 21
8400682 GTTTTTAATA
*
8400692 TTATATTTATATATATTATTAT
1 TTATATTTCTA-ATATTATTAT
*
8400714 ATATATTT-TAATATTATTAGT
1 TTATATTTCTAATATTATTA-T
* ** *
8400735 TATATTTTTCTTTTA-TACTACT
1 T-TATATTTCTAATATTATTA-T
* *
8400757 ATATATATCTAATATTA-TAT
1 TTATATTTCTAATATTATTAT
* *
8400777 GGTATATTTCTAATACTATTAT
1 -TTATATTTCTAATATTATTAT
8400799 TTATAT
1 TTATAT
8400805 ATATTTTATA
Statistics
Matches: 69, Mismatches: 16, Indels: 13
0.70 0.16 0.13
Matches are distributed among these distances:
20 10 0.14
21 33 0.48
22 23 0.33
23 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (21 bp):
TTATATTTCTAATATTATTAT
Found at i:8402170 original size:38 final size:38
Alignment explanation
Indices: 8402087--8402174 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 38
8402077 TTTCTTAATT
* * *
8402087 TGTAAAAAATAATAAAATTATTAGAAAATTTTAAATAC
1 TGTAAAAAATAATAAAATTATTAGAAAATATAAAAGAC
*
8402125 TGAAAAAAAT-ATAAAAATTATTAG-AAATCATAAAAGAC
1 TGTAAAAAATAAT-AAAATTATTAGAAAAT-ATAAAAGAC
8402163 TGTAAAAAATAA
1 TGTAAAAAATAA
8402175 AATTTTTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
37 6 0.14
38 35 0.83
39 1 0.02
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.28
Consensus pattern (38 bp):
TGTAAAAAATAATAAAATTATTAGAAAATATAAAAGAC
Found at i:8408764 original size:27 final size:27
Alignment explanation
Indices: 8408685--8408766 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 27
8408675 AATGTTGGCA
*
8408685 CTTCGGGTGCGAGCTATATTGATTTGG
1 CTTCGGGTGCGAGTTATATTGATTTGG
* * *
8408712 CTTC-GG-GCCA-TGATATT-A---GCA
1 CTTCGGGTGCGAGTTATATTGATTTG-G
8408733 CTTCGGGTGCGAGTTATATTGATTTGG
1 CTTCGGGTGCGAGTTATATTGATTTGG
8408760 CTTCGGG
1 CTTCGGG
8408767 CCATGATATT
Statistics
Matches: 40, Mismatches: 7, Indels: 16
0.63 0.11 0.25
Matches are distributed among these distances:
20 1 0.03
21 4 0.10
22 2 0.05
23 4 0.10
24 11 0.28
25 4 0.10
26 2 0.05
27 11 0.28
28 1 0.03
ACGTcount: A:0.16, C:0.17, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGGGTGCGAGTTATATTGATTTGG
Found at i:8408775 original size:24 final size:24
Alignment explanation
Indices: 8408700--8408776 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
8408690 GGTGCGAGCT
8408700 ATATTGATTTGGCTTCGGGCCATG
1 ATATTGATTTGGCTTCGGGCCATG
* * *
8408724 ATATT-A---GCACTTCGGGTGCGAGTT
1 ATATTGATTTG-GCTTC-GG-GCCA-TG
8408748 ATATTGATTTGGCTTCGGGCCATG
1 ATATTGATTTGGCTTCGGGCCATG
8408772 ATATT
1 ATATT
8408777 AGCACTTCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
20 1 0.03
21 4 0.10
22 2 0.05
23 4 0.10
24 17 0.44
25 4 0.10
26 2 0.05
27 4 0.10
28 1 0.03
ACGTcount: A:0.19, C:0.16, G:0.27, T:0.38
Consensus pattern (24 bp):
ATATTGATTTGGCTTCGGGCCATG
Found at i:8408791 original size:48 final size:48
Alignment explanation
Indices: 8408577--8408823 Score: 309
Period size: 48 Copynumber: 5.1 Consensus size: 48
8408567 AGAATTAACT
* * *
8408577 ATGATATTGGCACTTCAGGTGTGAGTTATATTGAGTTGGCTTCGGGCC
1 ATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTGGCTTCGGGCC
*
8408625 ATGAT-TTTGACACTTC-GGATGCGAGTTATATTGATTTGGCTTCGGGCC
1 ATGATATTAG-CACTTCAGG-TGCGAGTTATATTGATTTGGCTTCGGGCC
* * * * *
8408673 ATAATGTTGGCACTTCGGGTGCGAGCTATATTGATTTGGCTTCGGGCC
1 ATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTGGCTTCGGGCC
*
8408721 ATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGCTTCGGGCC
1 ATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTGGCTTCGGGCC
* * ** * * *
8408769 ATGATATTAGCACTTCAAGTGCGAGATGCATTAAGTTGGCTTCGAGCC
1 ATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTGGCTTCGGGCC
8408817 ATGATAT
1 ATGATAT
8408824 GGGCACTTAG
Statistics
Matches: 177, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
47 5 0.03
48 167 0.94
49 5 0.03
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (48 bp):
ATGATATTAGCACTTCAGGTGCGAGTTATATTGATTTGGCTTCGGGCC
Found at i:8408837 original size:144 final size:144
Alignment explanation
Indices: 8408577--8408837 Score: 346
Period size: 144 Copynumber: 1.8 Consensus size: 144
8408567 AGAATTAACT
* * * *
8408577 ATGATATTGGCACTTCAGGTGTGAGTTATATTGAGTTGGCTTCGGGCCATGATTTTGACACTTCG
1 ATGATATTAGCACTTCAGGTGCGAGTTATATTGAGTTGGCTTCGGGCCATGATTTAGACACTTCA
* * * * * * * *
8408642 GATGCGAGTTATATTGATTTGGCTTCGGGCCATAATGTTGGCACTTCGGGTGCGAGCTATATTGA
66 GATGCGAGATACATTAAGTTGGCTTCGAGCCATAATATGGGCACTTAGGGTGCGAGCTATATTGA
8408707 TTTGGCTTCGGGCC
131 TTTGGCTTCGGGCC
* *
8408721 ATGATATTAGCACTTCGGGTGCGAGTTATATTGATTTGGCTTCGGGCCATGATATTAG-CACTTC
1 ATGATATTAGCACTTCAGGTGCGAGTTATATTGAGTTGGCTTCGGGCCATGAT-TTAGACACTTC
* *
8408785 A-AGTGCGAGATGCATTAAGTTGGCTTCGAGCCATGATATGGGCACTTAGGGTG
65 AGA-TGCGAGATACATTAAGTTGGCTTCGAGCCATAATATGGGCACTTAGGGTG
8408838 TGAGACTCCC
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
143 1 0.01
144 95 0.96
145 3 0.03
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (144 bp):
ATGATATTAGCACTTCAGGTGCGAGTTATATTGAGTTGGCTTCGGGCCATGATTTAGACACTTCA
GATGCGAGATACATTAAGTTGGCTTCGAGCCATAATATGGGCACTTAGGGTGCGAGCTATATTGA
TTTGGCTTCGGGCC
Found at i:8422534 original size:23 final size:23
Alignment explanation
Indices: 8422415--8422535 Score: 67
Period size: 23 Copynumber: 5.4 Consensus size: 23
8422405 TGTATATAGG
*
8422415 GTTTGCATACTGCCAACATGTGA
1 GTTTGCATACTGCTAACATGTGA
* *
8422438 GTTTGTATA--AC-AGACATG-G-
1 GTTTGCATACTGCTA-ACATGTGA
* *
8422457 GTTCGTATACTGCTAACATTGTGA
1 GTTTGCATACTGCTAACA-TGTGA
* * * *
8422481 ATTTGCATAACTGAT-ATATAT-A
1 GTTTGCAT-ACTGCTAACATGTGA
*
8422503 GGTTCGCATACTGCTAACATGTGA
1 -GTTTGCATACTGCTAACATGTGA
8422527 GTTTGCATA
1 GTTTGCATA
8422536 ACAAACATAG
Statistics
Matches: 71, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
19 8 0.11
20 2 0.03
21 10 0.14
22 9 0.13
23 29 0.41
24 8 0.11
25 5 0.07
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (23 bp):
GTTTGCATACTGCTAACATGTGA
Found at i:8422550 original size:46 final size:46
Alignment explanation
Indices: 8422278--8422560 Score: 211
Period size: 46 Copynumber: 6.2 Consensus size: 46
8422268 AATATACGAA
* * * * * *
8422278 TCGCATGCTGCTAATCATATGAATTTGCATGA-AGGCGTATATAGGGT
1 TCGCATACTGCTAA-CATGTGAGTTTGCATAACAGACATATATA-GGT
* ** * *
8422325 TCGCATACTACTAATGTGTGAGTTTGCATAA-AGGCGTATATAGGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAACAGACATATATA-GGT
* * * * ***
8422371 TCACATACTGTTAATATGTGAGTTTACATAA-AGGTGTATATAGGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAACAGACATATATA-GGT
* * * *
8422417 TTGCATACTGCCAACATGTGAGTTTGTATAACAGAC----ATGGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAACAGACATATATAGGT
* * * *
8422459 TCGTATACTGCTAACATTGTGAATTTGCATAACTGATATATATAGGT
1 TCGCATACTGCTAACA-TGTGAGTTTGCATAACAGACATATATAGGT
* *
8422506 TCGCATACTGCTAACATGTGAGTTTGCATAACAAACATAGATAGGT
1 TCGCATACTGCTAACATGTGAGTTTGCATAACAGACATATATAGGT
*
8422552 TCACATACT
1 TCGCATACT
8422561 TTAAACATAT
Statistics
Matches: 192, Mismatches: 38, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
42 16 0.08
43 18 0.09
46 124 0.65
47 34 0.18
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (46 bp):
TCGCATACTGCTAACATGTGAGTTTGCATAACAGACATATATAGGT
Found at i:8425071 original size:48 final size:48
Alignment explanation
Indices: 8424989--8425172 Score: 199
Period size: 48 Copynumber: 3.8 Consensus size: 48
8424979 ATAATAGGAT
* * *
8424989 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
* * * *
8425037 TAGGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCA-A
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT-ATA
* * * * * * *
8425085 CATGTGGGCTAGTGTAAGACCATGTTTGGAACATGACATTGGCACCGATA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA--TATA
*
8425135 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCA
8425173 CAGTATCTTA
Statistics
Matches: 110, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
48 76 0.69
49 1 0.01
50 33 0.30
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
Found at i:8426999 original size:18 final size:18
Alignment explanation
Indices: 8426978--8427016 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8426968 AAACTTTTTT
*
8426978 AATT-TAAAAATCATTAAA
1 AATTATAAAAAT-ATCAAA
8426996 AATTATAAAAATATCAAA
1 AATTATAAAAATATCAAA
8427014 AAT
1 AAT
8427017 ATTTTCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
AATTATAAAAATATCAAA
Found at i:8441275 original size:23 final size:22
Alignment explanation
Indices: 8441245--8441288 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
8441235 CTTTTCTTTG
*
8441245 CTTTAA-TTCTGTTCCTGTTTTT
1 CTTTAATTTCTGCT-CTGTTTTT
8441267 CTTTGAATTTCTGCTCTGTTTT
1 CTTT-AATTTCTGCTCTGTTTT
8441289 CTTCCATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 9 0.47
24 6 0.32
ACGTcount: A:0.09, C:0.18, G:0.11, T:0.61
Consensus pattern (22 bp):
CTTTAATTTCTGCTCTGTTTTT
Found at i:8444175 original size:31 final size:30
Alignment explanation
Indices: 8444125--8444192 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
8444115 CGTTAATGAA
8444125 TGACTGATTTGTCACTTTTTAATAACGTT-AG
1 TGACTGATTTGTCACTTTTTAA-AA-GTTGAG
* * * *
8444156 TGACTGTTTTGTTATTTTTTCAAAGTTGAG
1 TGACTGATTTGTCACTTTTTAAAAGTTGAG
8444186 TGACTGA
1 TGACTGA
8444193 AATGAAACTC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 3 0.10
30 10 0.32
31 18 0.58
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.47
Consensus pattern (30 bp):
TGACTGATTTGTCACTTTTTAAAAGTTGAG
Found at i:8446768 original size:15 final size:14
Alignment explanation
Indices: 8446748--8446796 Score: 71
Period size: 15 Copynumber: 3.4 Consensus size: 14
8446738 GTTATTAAGG
8446748 TTAATTAATTAATAT
1 TTAATTAATTAA-AT
8446763 TTAATTAATTAAAT
1 TTAATTAATTAAAT
*
8446777 TTGATTAATTAAGAT
1 TTAATTAATTAA-AT
8446792 TTAAT
1 TTAAT
8446797 CTAAGTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 13 0.42
15 18 0.58
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
TTAATTAATTAAAT
Found at i:8450734 original size:9 final size:9
Alignment explanation
Indices: 8450720--8450844 Score: 60
Period size: 9 Copynumber: 13.6 Consensus size: 9
8450710 ACATGTGGCA
8450720 AAAAATTAT
1 AAAAATTAT
8450729 -AAAA--AT
1 AAAAATTAT
*
8450735 AAAAATAAAT
1 AAAAAT-TAT
*
8450745 AAAATTTAT
1 AAAAATTAT
8450754 AAAAATTAT
1 AAAAATTAT
* *
8450763 -TAAATTTT
1 AAAAATTAT
* **
8450771 AATAAGAAT
1 AAAAATTAT
*
8450780 AAAAATGTTT
1 AAAAAT-TAT
*
8450790 AAAATTTAGT
1 AAAAATTA-T
*
8450800 AAAAATTAGAAA
1 AAAAATT---AT
8450812 AAAAATTAT
1 AAAAATTAT
*
8450821 AAAAATCAT
1 AAAAATTAT
8450830 AAAAAATTAT
1 -AAAAATTAT
8450840 AAAAA
1 AAAAA
8450845 AAACTATAAA
Statistics
Matches: 84, Mismatches: 21, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
6 2 0.02
7 4 0.05
8 10 0.12
9 32 0.38
10 28 0.33
12 7 0.08
13 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:8450755 original size:19 final size:19
Alignment explanation
Indices: 8450733--8450885 Score: 69
Period size: 19 Copynumber: 7.3 Consensus size: 19
8450723 AATTATAAAA
8450733 ATAAAAATAAATAAAATTT
1 ATAAAAATAAATAAAATTT
* * *
8450752 ATAAAAATTATTAAATTTT
1 ATAAAAATAAATAAAATTT
*
8450771 AATAAGAATAAAAATGTTTAAAATTT
1 -ATAA-AA-ATAAA----TAAAATTT
* *
8450797 AGTAAAAATTAGAAAAAAAATT
1 A-TAAAAA-TA-AATAAAATTT
8450819 ATAAAAATCATAA-AAAA-TT
1 ATAAAAAT-A-AATAAAATTT
8450838 ATAAAAA-AAACTATAAATTCT
1 ATAAAAATAAA-TA-AAATT-T
*
8450859 ATAAAAAAAATAATAAAATTT
1 AT-AAAAATA-AATAAAATTT
8450880 ATAAAA
1 ATAAAA
8450886 TGCATCAAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 37
0.68 0.07 0.24
Matches are distributed among these distances:
16 2 0.02
17 1 0.01
18 1 0.01
19 28 0.27
20 14 0.13
21 17 0.16
22 19 0.18
23 3 0.03
24 3 0.03
25 4 0.04
26 12 0.12
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAAAAATAAATAAAATTT
Found at i:8450845 original size:10 final size:10
Alignment explanation
Indices: 8450811--8450845 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
8450801 AAAATTAGAA
8450811 AAAAAATTAT
1 AAAAAATTAT
*
8450821 -AAAAATCAT
1 AAAAAATTAT
8450830 AAAAAATTAT
1 AAAAAATTAT
8450840 AAAAAA
1 AAAAAA
8450846 AACTATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:8450845 original size:21 final size:20
Alignment explanation
Indices: 8450811--8450885 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 20
8450801 AAAATTAGAA
*
8450811 AAAAAATTAT-AAAAATCAT
1 AAAAAATTATAAAAAAACAT
8450830 AAAAAATTATAAAAAAA-ACT
1 AAAAAATTATAAAAAAACA-T
* *
8450850 ATAAATTCTATAAAAAAA-AT
1 AAAAAAT-TATAAAAAAACAT
8450870 AATAAAATTTATAAAA
1 AA-AAAA-TTATAAAA
8450886 TGCATCAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
19 11 0.24
20 13 0.28
21 21 0.46
22 1 0.02
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAAAATTATAAAAAAACAT
Found at i:8451125 original size:19 final size:20
Alignment explanation
Indices: 8451076--8451127 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
8451066 GTACAATAAT
8451076 TTTTATAATTTT-TTTACGAA
1 TTTTATAATTTTCTTTAC-AA
*
8451096 TTTTCT-A-TTTCTTTAC-A
1 TTTTATAATTTTCTTTACAA
8451113 TTTTATAATTTTCTT
1 TTTTATAATTTTCTT
8451128 ACGACTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
17 6 0.22
18 4 0.15
19 12 0.44
20 5 0.19
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATAATTTTCTTTACAA
Found at i:8451166 original size:28 final size:28
Alignment explanation
Indices: 8451112--8451184 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
8451102 ATTTCTTTAC
8451112 ATTTTATAATTTTCTTACGACTTTATAAA
1 ATTTTATAATTTT-TTACGACTTTATAAA
*
8451141 ATTTTATAATTTTTTACGATTTTATAAA
1 ATTTTATAATTTTTTACGACTTTATAAA
* *
8451169 ATTTAACAATTTTTTA
1 ATTTTATAATTTTTTA
8451185 TTATTTATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 28 0.68
29 13 0.32
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (28 bp):
ATTTTATAATTTTTTACGACTTTATAAA
Found at i:8451267 original size:19 final size:18
Alignment explanation
Indices: 8451227--8451278 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
8451217 TTTAATATTT
8451227 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTA-TAAAA
**
8451245 TTTAATTATTTTTATAACT
1 TTT-ATTATTTTTATAAAA
8451264 TTTATTGATTTTTAT
1 TTTATT-ATTTTTAT
8451279 TTTTTTATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 6 0.21
19 15 0.52
20 8 0.28
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTATTATTTTTATAAAA
Found at i:8455003 original size:55 final size:55
Alignment explanation
Indices: 8454907--8455013 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
8454897 GGTCAATTTA
* *
8454907 GTACACGGGTAGGACACATGGGCGTGTGCCTAGCCCGTGCTTCAAAGTCAGTAGC
1 GTACACGGGTAGGACACATGGGCGTGTGCCTAGCCCATGCTTAAAAGTCAGTAGC
* * *
8454962 GTACACGGGTAGGCCACATGGGTGTGTGCCTTAG-CCATGCTTAAAATTCAGT
1 GTACACGGGTAGGACACATGGGCGTGTGCC-TAGCCCATGCTTAAAAGTCAGT
8455014 GTTGCACACG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 43 0.93
56 3 0.07
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.23
Consensus pattern (55 bp):
GTACACGGGTAGGACACATGGGCGTGTGCCTAGCCCATGCTTAAAAGTCAGTAGC
Found at i:8459070 original size:22 final size:22
Alignment explanation
Indices: 8459042--8459084 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8459032 TTGGTTCTCT
* *
8459042 GCAGGTGTACATAGGCGGTGGA
1 GCAGGTGGACATAGACGGTGGA
*
8459064 GCAGGTGGATATAGACGGTGG
1 GCAGGTGGACATAGACGGTGG
8459085 CCAGTGGCGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.47, T:0.19
Consensus pattern (22 bp):
GCAGGTGGACATAGACGGTGGA
Found at i:8459469 original size:44 final size:44
Alignment explanation
Indices: 8459420--8460128 Score: 454
Period size: 44 Copynumber: 15.6 Consensus size: 44
8459410 AATCCATTCT
* * * *
8459420 ACTGCAACTTCAGAGAGATAAGACTAGTAGCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * * *
8459464 GCTGCAATTTCAGGGAGATGAGATTTGTGATTTGATTTAATCTGAC-CC
1 ACTGCAACTTCAGGGAGATAAGATTTGT-A---GCTTTAATCTG-CTCC
** * * * *
8459512 ACTATAACTTCA-GAAGTATAGGATTTGTCGCTTTAAACTGCTCC
1 ACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTTAATCTGCTCC
* * * * * *
8459556 ACTGCAACTTCAGGGAGATTATACTTGTGGTTTTAATTTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * ** *
8459600 ACTGCAACTTTAGGGAGAGAAGATTTGTTTATTTTTAACCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTG--TAGCTTTAATCTGCTCC
* *
8459646 ACTGCAACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * * * *
8459690 ACTGCAACTTCAGAGAGATAATATTT-TCTGTTTTCAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGT-AGCTTT-AATCTGCTCC
* *
8459735 ACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGGGAGAT-A-A---G--ATTTGTAGCTTTAATCTGCTCC
** * * * * *
8459786 ACTATAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCC
* * * * * * * *
8459831 ATTACAACTTTAGGGAGATAAGACTCGTA-ATTTCAACCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTT-AATCTGCTCC
* * * * *
8459875 ACTGCAGCTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCC
* * ** *
8459919 ACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCC
* * * *
8459964 ACTGCAACTTCAGGGAGATAAGATCTGTGGCTTTAATTTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCC
* ** * *
8460008 ACTACAACTTCAATGAGATAGGATTTGTAATTTGTAGCTTTAATATGTTCC
1 ACTGCAACTTCAGGGAGATA--A---G--ATTTGTAGCTTTAATCTGCTCC
* * ** * * *
8460059 ACTACAACTTCAGGGAAATAAGATCCGTTATCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCC
*
8460104 ACTGCAACTTTAGGGAGATAAGATT
1 ACTGCAACTTCAGGGAGATAAGATT
8460129 CACTATAATG
Statistics
Matches: 503, Mismatches: 130, Indels: 63
0.72 0.19 0.09
Matches are distributed among these distances:
43 4 0.01
44 220 0.44
45 135 0.27
46 41 0.08
47 4 0.01
48 28 0.06
49 4 0.01
50 1 0.00
51 57 0.11
52 8 0.02
53 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCC
Found at i:8459656 original size:90 final size:89
Alignment explanation
Indices: 8459543--8459987 Score: 291
Period size: 89 Copynumber: 4.9 Consensus size: 89
8459533 GATTTGTCGC
* * * * *
8459543 TTTAAACTGCTCCACTGCAACTTCAGGGAGATTATACTTGTGGTTTTAATTTGCTCCACTGCAAC
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTTAATCTGCTCCACTGCAAC
* * *
8459608 TTTAGGGAGAGAAGATTTGTTTATT
66 TTCAGAGAGAGAAGATTT-TCTATT
* ** *
8459633 TTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTCTACTGCAAC
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTTAATCTGCTCCACTGCAAC
* * *
8459698 TTCAGAGAGATAATATTTTCTGTT
66 TTCAGAGAGAGAAGATTTTCTATT
* * * * * *
8459722 TTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCA
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGAT-A-A---G--ACTTGTAGCTTTAATCTGCTCCA
** * * * * *
8459787 CTATAACTTCAGGGAAATAAGATTTGCTATC
59 CTGCAACTTCAGAGAGAGAAGATTTTCTATT
* ** * * * * * * * * *
8459818 TTCAGTCTACTCCATTACAACTTTAGGGAGATAAGACTCGTA-ATTTCAACCTGCTCTACTGCAG
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTT-AATCTGCTCCACTGCAA
* * * **
8459882 CTTCAGAGAGATAAG-GTTTATAGC
65 CTTCAGAGAGAGAAGATTTTCTATT
* * * * * ** *
8459906 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAA
1 TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAGCTTTAATCTGCTCCACTGCAA
* *
8459971 CTTCAGGGAGATAAGAT
65 CTTCAGAGAGAGAAGAT
8459988 CTGTGGCTTT
Statistics
Matches: 275, Mismatches: 69, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
88 38 0.14
89 89 0.32
90 73 0.27
91 2 0.01
94 2 0.01
95 1 0.00
96 70 0.25
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (89 bp):
TTTAAACTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTTAATCTGCTCCACTGCAAC
TTCAGAGAGAGAAGATTTTCTATT
Found at i:8459865 original size:140 final size:141
Alignment explanation
Indices: 8459633--8460127 Score: 487
Period size: 140 Copynumber: 3.6 Consensus size: 141
8459623 TTTGTTTATT
* * * * * * * * * *
8459633 TTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TAGCTTTAATCTGCTCTACTGCAA
1 TTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAA
* * * * * * * *
8459697 CTTCAGAGAGATAATATTTTCTG-TTTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTT
66 CTTTAGGGAGATAAGA-TCTGTGAATTTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTT
8459761 GTAATTTGTAGC
130 GTAATTTGTAGC
* * *
8459773 TTTAATCTGTTCCACTATAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCATTACAA
1 TTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAA
* *
8459838 CTTTAGGGAGATAAGA-CTCGT-AATTTCAACCTGCTCTACTGCAGCTTC-AGAGAGATAAG---
66 CTTTAGGGAGATAAGATCT-GTGAATTTCAATCTGCTCTACTGCAACTTCAAG-GAGATAAGATT
*
8459897 -G---TTTATAGC
129 TGTAATTTGTAGC
* * * * *
8459906 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTC-GATCTACTCCACTGCA
1 TTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAG-TCTACTCCACTGCA
* ** * * * *
8459970 ACTTCAGGGAGATAAGATCTGTGGCTTT-AATTTGCTCTACTACAACTTCAATGAGATAGGATTT
65 ACTTTAGGGAGATAAGATCTGTGAATTTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTT
8460034 GTAATTTGTAGC
130 GTAATTTGTAGC
* ** * *
8460046 TTTAATATGTTCCACTACAACTTCAGGGAAATAAGATCCGTTATCTTCAGTCTGCTCCACTGCAA
1 TTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAA
8460111 CTTTAGGGAGATAAGAT
66 CTTTAGGGAGATAAGAT
8460128 TCACTATAAT
Statistics
Matches: 286, Mismatches: 53, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
132 1 0.00
133 103 0.36
134 6 0.02
136 1 0.00
137 1 0.00
139 3 0.01
140 140 0.49
141 31 0.11
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (141 bp):
TTTAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAA
CTTTAGGGAGATAAGATCTGTGAATTTCAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTG
TAATTTGTAGC
Found at i:8460042 original size:273 final size:273
Alignment explanation
Indices: 8459633--8460126 Score: 704
Period size: 273 Copynumber: 1.8 Consensus size: 273
8459623 TTTGTTTATT
* * * * *
8459633 TTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTCTACTGCAAC
1 TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAAC
* * * * *
8459698 TTCAGAGAGATAATATTTTCTGTTTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGT
66 TTCAGAGAGATAAGATTGTCGGCTTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTTGT
* * **
8459763 AATTTGTAGCTTTAATCTGTTCCACTATAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTAC
131 AATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATCCGCTATCTTCAGTCTAC
*
8459828 TCCATTACAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGA
196 TCCACTACAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGA
8459893 TAAGGTTTATAGC
261 TAAGGTTTATAGC
* * * *
8459906 TTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAA
1 TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTCAATCTACTCCACTGCAA
* * * * * *
8459971 CTTCAGGGAGATAAGATCTGT-GGCTTT-AATTTGCTCTACTACAACTTCAATGAGATAGGATTT
65 CTTCAGAGAGATAAGAT-TGTCGGCTTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTT
*
8460034 GTAATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATCCGTTATCTTCAGTCT
129 GTAATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATCCGCTATCTTCAGTCT
* *
8460099 GCTCCACTGCAACTTTAGGGAGATAAGA
194 ACTCCACTACAACTTTAGGGAGATAAGA
8460127 TTCACTATAA
Statistics
Matches: 191, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
273 151 0.79
274 38 0.20
275 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (273 bp):
TTTAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTACTCCACTGCAAC
TTCAGAGAGATAAGATTGTCGGCTTTCAATCTACTCCACTACAACTTCAAGGAGATAAGATTTGT
AATTTGTAGCTTTAATATGTTCCACTACAACTTCAGGGAAATAAGATCCGCTATCTTCAGTCTAC
TCCACTACAACTTTAGGGAGATAAGACTCGTAATTTCAACCTGCTCTACTGCAGCTTCAGAGAGA
TAAGGTTTATAGC
Found at i:8460124 original size:229 final size:224
Alignment explanation
Indices: 8459636--8460125 Score: 549
Period size: 229 Copynumber: 2.1 Consensus size: 224
8459626 GTTTATTTTT
*
8459636 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTAGCTTTAATCTGCTCTACTGCAACTTC
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTC
* * * * *
8459701 AGAGAGATAATATTTTCTGTTTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAAT
66 AGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATCTG----
* * * *
8459766 TTGTAGCTTTAATCTGTTCCACTATAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCC
127 TTG-AGCTTTAATCTGCTCCACTACAACTTCAAGGAAATAAGATTTGCTATCTTCAGTATACTCC
* * *
8459831 ATTACAACTTTAGGGAGATAAGACTCGTAATTTC
191 ACTACAACTTCAGGGAAATAAGACTCGTAATTTC
* * *
8459865 AACCTGCTCTACTGCAGCTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTC
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTC
* *
8459930 AGAGAGATAAGATTTGCTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTG-TG-
66 AGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATCTGTTGA
* * * * * * *
8459993 GCTTTAATTTGCTCTACTACAACTTCAATGAGATAGGATTTG-TAAT-TTGTAGCTTTAATATGT
131 GCTTTAATCTGCTCCACTACAACTTCAAGGAAATAAGATTTGCT-ATCTT-CAG---T-ATA--C
*
8460056 TCCACTACAACTTCAGGGAAATAAGA-TCCGTTATCTTC
188 TCCACTACAACTTCAGGGAAATAAGACT-CGTAAT-TTC
** *
8460094 AGTCTGCTCCACTGCAACTTTAGGGAGATAAG
1 AACCTGCTCCACTGCAACTTCAGGGAGATAAG
8460126 ATTCACTATA
Statistics
Matches: 219, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
221 3 0.01
222 38 0.17
224 2 0.01
225 1 0.00
226 2 0.01
227 1 0.00
228 28 0.13
229 144 0.66
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (224 bp):
AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTC
AGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATCTGTTGA
GCTTTAATCTGCTCCACTACAACTTCAAGGAAATAAGATTTGCTATCTTCAGTATACTCCACTAC
AACTTCAGGGAAATAAGACTCGTAATTTC
Found at i:8460816 original size:39 final size:39
Alignment explanation
Indices: 8460761--8460839 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
8460751 TCAGATGAAA
* * *
8460761 ATAGGTCCCTAGATATCATAGCATGATCTTCTTTGCACT
1 ATAGGTCCCTAAATATCATAGCATGAGCTTCTTCGCACT
*
8460800 ATAGGTCCCTAAATATCATAGTATGAGCTTCTTCGCACT
1 ATAGGTCCCTAAATATCATAGCATGAGCTTCTTCGCACT
8460839 A
1 A
8460840 ACTTCTCACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (39 bp):
ATAGGTCCCTAAATATCATAGCATGAGCTTCTTCGCACT
Found at i:8472860 original size:16 final size:16
Alignment explanation
Indices: 8472835--8472866 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8472825 CGGTTTATAT
*
8472835 ATATATATTTATATTC
1 ATATAGATTTATATTC
8472851 ATATAGATTTATATTC
1 ATATAGATTTATATTC
8472867 GAAGTAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (16 bp):
ATATAGATTTATATTC
Found at i:8476471 original size:13 final size:12
Alignment explanation
Indices: 8476448--8476493 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 12
8476438 GAGGGTAGGA
8476448 TTCTGTATATCTG
1 TTCTGT-TATCTG
8476461 TTCTGCTTATCTG
1 TTCTG-TTATCTG
8476474 ATTCTGTTATCTG
1 -TTCTGTTATCTG
8476487 TATCTGT
1 T-TCTGT
8476494 AAAGGACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.03
13 23 0.77
14 6 0.20
ACGTcount: A:0.13, C:0.17, G:0.15, T:0.54
Consensus pattern (12 bp):
TTCTGTTATCTG
Found at i:8479230 original size:45 final size:44
Alignment explanation
Indices: 8479136--8479276 Score: 122
Period size: 46 Copynumber: 3.1 Consensus size: 44
8479126 TGGACTACAA
* * * * *
8479136 TTAAGCTCGTGCTTAGGAGTGTCATCATTTATTATGTATGAACAAT
1 TTAAACTCATGCTTAGGAG-GTCATCATTTATT-TATATGAATAGT
*
8479182 TTAAATTCATGCTTAGGAGGTCATCATTTATTTCATATGAATAGT
1 TTAAACTCATGCTTAGGAGGTCATCATTTATTT-ATATGAATAGT
* * * * *
8479227 TTAAGCTCGTGCTTCA-GAGGATCATCATTTGTTTTTTATTAATAGT
1 TTAAACTCATGCTT-AGGAGG-TCATCATTT-ATTTATATGAATAGT
8479273 TTAA
1 TTAA
8479277 GATTGTGCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
44 1 0.01
45 36 0.46
46 39 0.49
47 3 0.04
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (44 bp):
TTAAACTCATGCTTAGGAGGTCATCATTTATTTATATGAATAGT
Found at i:8481096 original size:50 final size:50
Alignment explanation
Indices: 8481021--8481118 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
8481011 TAAGGAATAC
*
8481021 AAAGTCACCCACCGAGTACTAGATATGTATCCTTTTCAGATCCGCATAAG
1 AAAGTCACCCACCGAGTACTAGATATGTATCCTTTTCAAATCCGCATAAG
*
8481071 AAAGTCACCCATCGAGTACTAGATATGTATCCTTTTCAAATCCGCATA
1 AAAGTCACCCACCGAGTACTAGATATGTATCCTTTTCAAATCCGCATA
8481119 GGACTTCTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (50 bp):
AAAGTCACCCACCGAGTACTAGATATGTATCCTTTTCAAATCCGCATAAG
Found at i:8495654 original size:263 final size:262
Alignment explanation
Indices: 8495203--8495787 Score: 646
Period size: 263 Copynumber: 2.2 Consensus size: 262
8495193 TTCCGAAGAG
* * *
8495203 ACATTCGATTATTTTGAACAAACGGGAGATTGCAACCCAGCACGGTAGGGCAAT-ATTCCCCGAA
1 ACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGC-ATGATT-CCCGAA
* * * *
8495267 TTGCCAAACATCGAACATTTCTTTCATTTTAAAGAGTTTTTAGAAAACGTGAGTGAAATTCCGAA
64 TTGCCAAACACCGAACATTGCCTTCATTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCCGAA
* * *
8495332 GGGATCTTTGATCGTTTTGAACAAGTGAAAAAGCGCAACCCAGCACGATAGGGCACGATT-CTCG
129 GGGATCTTTGATCATTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCCGCG
* *
8495396 AATTGCCAA-ACATCGAACATCGCCTTTGTTTTAAAGGGTTTTCTTAAAAAACATGAGTGAAAAC
194 AATTGCCAATA-ATCGAACATCGCCTTCG-TTT-AAGGGATTT-TTAAAAAACATGAGTGAAAAC
8495460 CTAAAGGA
255 CTAAAGGA
* * **
8495468 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCG-ATT
1 ACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCATGATTCCCGAATT
** ** * * * **
8495532 TTCAAACACCGAGTATTGCCTTCGTTTTAAAG-GATTTTTAGAAGACATGAGTGAGATTTTGAAG
66 GCCAAACACCGAACATTGCCTTCATTTTAAAGAG-TTTTTAGAAAACATGAGTGAAATTCCGAAG
* * * * *
8495596 GGATGTTTGATTATTTT-AAGCAAATG-AGAAGTTGCAACCCAGCACGTTAGGGCACGATTCCGC
130 GGATCTTTGATCATTTTGAA-CAAATGAAAAAG-CGCAACCCAGCACGATAGGGCACGATTCCGC
* * * **
8495659 GAATTGCCAATAATCGCACATCGCCTTCGTTTAAGGGATTTTTAAAAGACATGGGTGAAATTCTA
193 GAATTGCCAATAATCGAACATCGCCTTCGTTTAAGGGATTTTTAAAAAACATGAGTGAAAACCTA
*
8495724 AAGGG
258 AAGGA
* * * * * *
8495729 ACCTTCGATTACTTTGAGCGAACGAGAAATTGCAACCCAACAC-ATTAGGGCACGATTCC
1 ACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGA-TAGGGCATGATTCC
8495788 TCGACTTACC
Statistics
Matches: 267, Mismatches: 46, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
260 1 0.00
261 71 0.27
262 15 0.06
263 99 0.37
264 33 0.12
265 48 0.18
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (262 bp):
ACATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCATGATTCCCGAATT
GCCAAACACCGAACATTGCCTTCATTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCCGAAGG
GATCTTTGATCATTTTGAACAAATGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCCGCGAA
TTGCCAATAATCGAACATCGCCTTCGTTTAAGGGATTTTTAAAAAACATGAGTGAAAACCTAAAG
GA
Found at i:8495739 original size:131 final size:132
Alignment explanation
Indices: 8495185--8495824 Score: 519
Period size: 131 Copynumber: 4.9 Consensus size: 132
8495175 TAGAAAATAC
** * * * * *
8495185 GAGTGAAATTCCGAAGAGACATTCGATTATTTTGAA-CAAACGGGAGATTGCAACCCAGCACGGT
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTT-AAGCAAACGAGAAATTGCAACCCAGCACGAT
** * ** * * *
8495249 AGGGCAATATTCCCCGAATTGCCAAACATCGAACATTTCTTTCATTTTAA-AGAGTTTTTAGAAA
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAGGGA-TTTTTA-AAA
*
8495313 -ACGT
128 GACAT
** * * ** ** * **
8495317 GAGTGAAATTCCGAAGGGATCTTTGATCGTTTTGAA-CAAGTGAAAAAGCGCAACCCAGCACGAT
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTT-AAGCAAACGAGAAATTGCAACCCAGCACGAT
* *
8495381 AGGGCACGATT-CTCGAATTGCCAAACATCGAACATCGCCTTTGTTTTAAAGGGTTTTCTTAAAA
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTTT-AAGGGATTT-TTAAAA
*
8495445 AACAT
128 GACAT
** * * **
8495450 GAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAA-CAAACGAGAAATCACAACCCAGCACGAT
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTT-AAGCAAACGAGAAATTGCAACCCAGCACGAT
* ** * ** * * *
8495514 AGGGCATGATTCC-CG-ATTTTCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGA
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAGGGATTTTTAAAAGA
8495577 CAT
130 CAT
* * * * * * * *
8495580 GAGTGAGATTTTGAAGGGATGTTTGATTATTTTAAGCAAATGAGAAGTTGCAACCCAGCACGTTA
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCACGATA
* *
8495645 GGGCACGATTCCGCGAATTGCCAATA-ATCGCACATCGCCTTCG-TTTAAGGGATTTTTAAAAGA
66 GGGCACGATTCCTCGAATTGCCAA-ACATCGAACATCGCCTTCGTTTTAAGGGATTTTTAAAAGA
8495708 CAT
130 CAT
* ** * * * *
8495711 GGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCGAACGAGAAATTGCAACCCAACAC-ATT
1 GAGTGAAATTCTAAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCACGA-T
* * ** *
8495775 AGGGCACGATTCCTCGACTTACCAAGTATCGAATATCGCCTTCGTTTTAA
65 AGGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAA
8495825 AAGATTCTTA
Statistics
Matches: 402, Mismatches: 94, Indels: 24
0.77 0.18 0.05
Matches are distributed among these distances:
129 2 0.00
130 68 0.17
131 146 0.36
132 114 0.28
133 71 0.18
134 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (132 bp):
GAGTGAAATTCTAAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCACGATA
GGGCACGATTCCTCGAATTGCCAAACATCGAACATCGCCTTCGTTTTAAGGGATTTTTAAAAGAC
AT
Found at i:8505673 original size:17 final size:17
Alignment explanation
Indices: 8505651--8505707 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
8505641 AAATCCGAAG
8505651 TTAACTGATGCTCAGTC
1 TTAACTGATGCTCAGTC
* *
8505668 TTAACTTGCTGGT-ATGTC
1 TTAAC-TGATGCTCA-GTC
**
8505686 AGAACTGATGCTCAGTC
1 TTAACTGATGCTCAGTC
8505703 TTAAC
1 TTAAC
8505708 CTACTGGTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 17 0.59
18 12 0.41
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (17 bp):
TTAACTGATGCTCAGTC
Found at i:8505699 original size:35 final size:35
Alignment explanation
Indices: 8505653--8505721 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
8505643 ATCCGAAGTT
* * *
8505653 AACTGATGCTCAGTCTTAACTTGCTGGTATGTCAG
1 AACTGATGCTCAGTCTTAACCTACTGGTACGTCAG
8505688 AACTGATGCTCAGTCTTAACCTACTGGTACGTCA
1 AACTGATGCTCAGTCTTAACCTACTGGTACGTCA
8505722 AACATCTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (35 bp):
AACTGATGCTCAGTCTTAACCTACTGGTACGTCAG
Found at i:8510419 original size:44 final size:40
Alignment explanation
Indices: 8510364--8510472 Score: 137
Period size: 44 Copynumber: 2.6 Consensus size: 40
8510354 CATTAGCGGC
* *
8510364 GTTTTAGCAAAAACGCTGCTAAAAATAGAGCAATAATGGCA
1 GTTTTACCAAAAACGCCGCTAAAAATAGAGCAATAATGG-A
* * *
8510405 GCATTTTTACCAAAAATGCCGCTAAAAATAGAGCAATAGTGGT
1 G---TTTTACCAAAAACGCCGCTAAAAATAGAGCAATAATGGA
8510448 GTTTTACCAAAAACGCCGCTAAAAA
1 GTTTTACCAAAAACGCCGCTAAAAA
8510473 ACAAAGCATT
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
40 23 0.39
41 1 0.02
43 1 0.02
44 34 0.58
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (40 bp):
GTTTTACCAAAAACGCCGCTAAAAATAGAGCAATAATGGA
Found at i:8510493 original size:41 final size:40
Alignment explanation
Indices: 8510316--8510495 Score: 166
Period size: 40 Copynumber: 4.4 Consensus size: 40
8510306 AAGTAGGGCT
* *
8510316 TTAGCGGCGTTTTATCAAAAGACGCCGC-AAAAATTGTA-CA
1 TTAGCGGCGTTTTACCAAAA-ACGCCGCTAAAAATAG-AGCA
* *
8510356 TTAGCGGCGTTTTAGCAAAAACGCTGCTAAAAATAGAGCAA
1 TTAGCGGCGTTTTACCAAAAACGCCGCTAAAAATAGAGC-A
* * * *
8510397 TAATGGCAGCATTTTTACCAAAAATGCCGCTAAAAATAGAGCA
1 T--TAGCGGC-GTTTTACCAAAAACGCCGCTAAAAATAGAGCA
* * * * *
8510440 ATAGTGGTGTTTTACCAAAAACGCCGCTAAAAAACAAAGCA
1 TTAGCGGCGTTTTACCAAAAACGCCGCT-AAAAATAGAGCA
8510481 TTAGCGGCGTTTTAC
1 TTAGCGGCGTTTTAC
8510496 AAACCAGAGC
Statistics
Matches: 112, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
39 7 0.06
40 45 0.40
41 27 0.24
43 6 0.05
44 27 0.24
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (40 bp):
TTAGCGGCGTTTTACCAAAAACGCCGCTAAAAATAGAGCA
Found at i:8510686 original size:39 final size:38
Alignment explanation
Indices: 8510597--8510691 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 38
8510587 TAACCCCTAA
* * * *
8510597 AACCCTAAACCCCTCAAAAAATCATAAACACTAATCTAT
1 AACCCTAAA-ACCTTAAAAAACCATAAACACTAAACTAT
* * *
8510636 GACCCTTAAACCTTAAAAAACCTTAAACACTAAACTAT
1 AACCCTAAAACCTTAAAAAACCATAAACACTAAACTAT
8510674 AACCCATAAAACCTTAAA
1 AACCC-TAAAACCTTAAA
8510692 CCTCAAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
38 28 0.61
39 18 0.39
ACGTcount: A:0.49, C:0.28, G:0.01, T:0.21
Consensus pattern (38 bp):
AACCCTAAAACCTTAAAAAACCATAAACACTAAACTAT
Found at i:8510817 original size:7 final size:7
Alignment explanation
Indices: 8510806--8510869 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
8510796 TTTATTTTGG
*
8510806 GGTTTAG
1 GGTTTAA
8510813 GGTTTAA
1 GGTTTAA
**
8510820 TATTTAA
1 GGTTTAA
8510827 GGTTTAA
1 GGTTTAA
* *
8510834 GGTCTAT
1 GGTTTAA
8510841 GGTTTAA
1 GGTTTAA
*
8510848 GGTTTTAT
1 GG-TTTAA
8510856 GGTTTAA
1 GGTTTAA
8510863 GGTTTAA
1 GGTTTAA
8510870 TGGTCATAGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:8510858 original size:15 final size:15
Alignment explanation
Indices: 8510822--8510873 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
8510812 GGGTTTAATA
*
8510822 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
*
8510836 TCTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
8510851 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
8510866 TTAATGGT
1 TTTATGGT
8510874 CATAGGTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
14 12 0.36
15 21 0.64
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:8510868 original size:14 final size:14
Alignment explanation
Indices: 8510806--8510873 Score: 73
Period size: 14 Copynumber: 4.7 Consensus size: 14
8510796 TTTATTTTGG
*
8510806 GGTTTAGGGTTTAA
1 GGTTTATGGTTTAA
** *
8510820 TATTTAAGGTTTAA
1 GGTTTATGGTTTAA
*
8510834 GGTCTATGGTTTAA
1 GGTTTATGGTTTAA
8510848 GGTTTTATGGTTTAA
1 GG-TTTATGGTTTAA
8510863 GGTTTAATGGT
1 GGTTT-ATGGT
8510874 CATAGGTATA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
14 26 0.59
15 18 0.41
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.47
Consensus pattern (14 bp):
GGTTTATGGTTTAA
Found at i:8511311 original size:7 final size:7
Alignment explanation
Indices: 8511299--8511351 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
8511289 AAGGGGACAT
8511299 GGGTTAA
1 GGGTTAA
*
8511306 GAGTTAA
1 GGGTTAA
8511313 GGGTTAA
1 GGGTTAA
8511320 GGGTTAA
1 GGGTTAA
*
8511327 GGGTTTA
1 GGGTTAA
*
8511334 GGGTTTA
1 GGGTTAA
*
8511341 GGGTTTA
1 GGGTTAA
8511348 GGGT
1 GGGT
8511352 AATTAGTGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.34
Consensus pattern (7 bp):
GGGTTAA
Found at i:8511662 original size:18 final size:17
Alignment explanation
Indices: 8511625--8511659 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
8511615 TATATAAGTG
8511625 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
8511642 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
8511658 AT
1 AT
8511660 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:8512161 original size:3 final size:3
Alignment explanation
Indices: 8512153--8512184 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8512143 CATTTTATTA
8512153 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8512185 AAGAGAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8514175 original size:5 final size:6
Alignment explanation
Indices: 8514158--8514192 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
8514148 TTGTAATTGA
8514158 TATTTT TATTTT TATTTT TATTTT CATATTTT TAT
1 TATTTT TATTTT TATTTT TATTTT --TATTTT TAT
8514193 GTTACCTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 21 0.78
8 6 0.22
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:8516584 original size:13 final size:13
Alignment explanation
Indices: 8516566--8516598 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
8516556 TTTTAAAGTT
8516566 AAAATTTTAATAG
1 AAAATTTTAATAG
8516579 AAAA-TTTAATAG
1 AAAATTTTAATAG
8516591 AAAATTTT
1 AAAATTTT
8516599 TGTATTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (13 bp):
AAAATTTTAATAG
Found at i:8516758 original size:43 final size:44
Alignment explanation
Indices: 8516706--8516790 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 44
8516696 TTAAAATTTA
* * *
8516706 ATGACCTTTAGCGGCGTTTGTTGG-AAAAGCGCCGTTAAAGGGT
1 ATGACCTTTAACGGCGTTTGTGGGAAAAAGCGCCGCTAAAGGGT
*
8516749 ATGACCTTTAACGGTGTTTGTGGGAAAAAGCGCCGCTAAAGG
1 ATGACCTTTAACGGCGTTTGTGGGAAAAAGCGCCGCTAAAGG
8516791 TCAAAGCGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 21 0.57
44 16 0.43
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (44 bp):
ATGACCTTTAACGGCGTTTGTGGGAAAAAGCGCCGCTAAAGGGT
Found at i:8518923 original size:7 final size:7
Alignment explanation
Indices: 8518911--8518942 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
8518901 TGAAGAATAA
8518911 ATATAGT
1 ATATAGT
8518918 ATATAGT
1 ATATAGT
8518925 ATATAGT
1 ATATAGT
8518932 ATATA-T
1 ATATAGT
8518938 ATATA
1 ATATA
8518943 TAATAGTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (7 bp):
ATATAGT
Found at i:8523514 original size:75 final size:75
Alignment explanation
Indices: 8523425--8523575 Score: 257
Period size: 75 Copynumber: 2.0 Consensus size: 75
8523415 ACTCGTAAAT
* * **
8523425 TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATTAGTGGTTTATTCATCGTGTTG
1 TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
8523490 GATGCTTGTG
66 GATGCTTGTG
*
8523500 TCACTTTATTTAGAAAAAAAGGGTATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
1 TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
8523565 GATGCTTGTG
66 GATGCTTGTG
8523575 T
1 T
8523576 GTAATGAAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (75 bp):
TCACTTTATTTAGAAAAAAAGGATATCTCCAAATTAATTTGATCAGTGATTTATTCATCGCCTTG
GATGCTTGTG
Found at i:8527620 original size:20 final size:19
Alignment explanation
Indices: 8527595--8527666 Score: 65
Period size: 20 Copynumber: 3.7 Consensus size: 19
8527585 ATAAATAATA
8527595 AAATTATTAAAAATTGTTAG
1 AAATTA-TAAAAATTGTTAG
* * *
8527615 AAATTACTAAATATTTGTAAA
1 AAATTA-TAAA-AATTGTTAG
* *
8527636 AAATTATAAAAAATATTAG
1 AAATTATAAAAATTGTTAG
8527655 AAATTA-AAAAAT
1 AAATTATAAAAAT
8527667 ACGATAAAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
18 5 0.12
19 10 0.24
20 14 0.34
21 12 0.29
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (19 bp):
AAATTATAAAAATTGTTAG
Found at i:8532543 original size:54 final size:54
Alignment explanation
Indices: 8532461--8532568 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
8532451 ACTGTGGATT
8532461 TGATTTGTCTTTACAGTATTTAGAGATTATTTTGTGGATGTTAAATTGCCTTTG
1 TGATTTGTCTTTACAGTATTTAGAGATTATTTTGTGGATGTTAAATTGCCTTTG
8532515 TGATTTGTCTTTACAGTATTTAGAGATTATTTTGTGGATGTTAAATTGCCTTTG
1 TGATTTGTCTTTACAGTATTTAGAGATTATTTTGTGGATGTTAAATTGCCTTTG
8532569 GGCCTTTCAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.50
Consensus pattern (54 bp):
TGATTTGTCTTTACAGTATTTAGAGATTATTTTGTGGATGTTAAATTGCCTTTG
Found at i:8539697 original size:126 final size:126
Alignment explanation
Indices: 8539468--8539759 Score: 370
Period size: 126 Copynumber: 2.3 Consensus size: 126
8539458 CCTTAAAACG
** * * * *
8539468 AAGGCAATGTTTGATGTTTGGAAATTCAGGAAATCGTGCCTTATCATGTTGGGTTTTGATTTCCC
1 AAGGCAATGTTCAATGTTTGGAAATTC-GGGAATCGTGCCCTATCATGCTGGGTTTCGATTTCCC
* * *
8539533 GTTTGTCCAAAATAATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTCAAATTCT-GAGAC
65 GTTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAG-C
* * **
8539595 AATGCAATGTTCAATGTTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCTGG
1 AAGGCAATGTTCAATGTTTGGAAATTCGGGAATCGTGCCCTATCATGCTGGGTTTCGATTTCCCG
* **
8539660 TTTGTTCAAAATAATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAGC
66 TTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAGC
* * * *
8539721 AAGGTAATATTCAATGTTTGGAAGTTTCAGGAATCGTGC
1 AAGGCAATGTTCAATGTTTGGAA-ATTCGGGAATCGTGC
8539760 TCTACTGTGT
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
126 103 0.73
127 39 0.27
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (126 bp):
AAGGCAATGTTCAATGTTTGGAAATTCGGGAATCGTGCCCTATCATGCTGGGTTTCGATTTCCCG
TTTGTCCAAAATAATCAAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAAGC
Found at i:8539798 original size:126 final size:126
Alignment explanation
Indices: 8539481--8539802 Score: 337
Period size: 126 Copynumber: 2.5 Consensus size: 126
8539471 GCAATGTTTG
* * * * * * **
8539481 ATGTTTGGAAATTCAGGAAATCGTGCCTTATCATGTTGGGTTTTGATTTCCCGTTTGTCCAAAAT
1 ATGTTTGGAAATTCAGG-AATCGTGCCCTATCGTGCTAGGTTTCGATTTCTCGTTTGGACAAAAT
** * * * * *
8539546 AATCAAATATTCCTTTAGAATTTCACTCGTGTTTTTCAAATTCTGAGACAATGCAATGTTCA
65 AATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAGACAAGGCAATATTCA
* * * **
8539608 ATGTTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTCGATTTCTGGTTTGTTCAAAATA
1 ATGTTTGGAAATTCAGGAATCGTGCCCTATCGTGCTAGGTTTCGATTTCTCGTTTGGACAAAATA
*
8539673 ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAA-AGCAAGGTAATATTCA
66 ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAGA-CAAGGCAATATTCA
* * * * *
8539734 ATGTTTGGAAGTTTCAGGAATCGTGCTCTA-CTGTGTTAGGTTTC-AGTTTTTCG-TTGGACTAA
1 ATGTTTGGAA-ATTCAGGAATCGTGCCCTATC-GTGCTAGGTTTCGA-TTTCTCGTTTGGACAAA
8539796 ATAATTG
63 ATAATTG
8539803 GGCATCATTT
Statistics
Matches: 165, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
125 1 0.01
126 117 0.71
127 47 0.28
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (126 bp):
ATGTTTGGAAATTCAGGAATCGTGCCCTATCGTGCTAGGTTTCGATTTCTCGTTTGGACAAAATA
ATTGAATATTCCTTCAGAATTTCACTCGTGTTTTACAAATTCTAAGACAAGGCAATATTCA
Found at i:8554536 original size:44 final size:45
Alignment explanation
Indices: 8554481--8554596 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
8554471 AGTAAACCTT
* **
8554481 ATCTCTCTGAAGTTGCAGTTGAGCAGGTTGAAG-TAACA-AGTCGC
1 ATCTCCCTGAAGTTGCAGTTGAGCAGACTGAAGTTAACAGA-TCGC
* * **
8554525 ATCTCCTTGAAGTTGCAG-TGAAACAGACTGAAGTTAACAGATCTT
1 ATCTCCCTGAAGTTGCAGTTG-AGCAGACTGAAGTTAACAGATCGC
*
8554570 ATCTCCCTGAAGTTGCAGTAGAGCAGA
1 ATCTCCCTGAAGTTGCAGTTGAGCAGA
8554597 TCGAAGCCGC
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
43 2 0.03
44 25 0.43
45 29 0.50
46 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTTGAGCAGACTGAAGTTAACAGATCGC
Found at i:8554581 original size:45 final size:43
Alignment explanation
Indices: 8554478--8554588 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 43
8554468 CATAGTAAAC
* * **
8554478 CTTATCTCTCTGAAGTTGCAGTTGAGCAGGTTGAAGTAACAAGT
1 CTTATCTCCCTGAAGTTGCAG-TGAACAGACTGAAGTAACAAGT
** *
8554522 CGCATCTCCTTGAAGTTGCAGTGAAACAGACTGAAGTTAAC-AGAT
1 CTTATCTCCCTGAAGTTGCAGTG-AACAGACTGAAG-TAACAAG-T
8554567 CTTATCTCCCTGAAGTTGCAGT
1 CTTATCTCCCTGAAGTTGCAGT
8554589 AGAGCAGATC
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
43 2 0.04
44 28 0.52
45 24 0.44
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGAACAGACTGAAGTAACAAGT
Found at i:8554627 original size:44 final size:43
Alignment explanation
Indices: 8554567--8554983 Score: 199
Period size: 44 Copynumber: 9.4 Consensus size: 43
8554557 GTTAACAGAT
*
8554567 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGCAGAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGCA-AC
* * ** * * * * * *
8554611 CTTATCTCTCTAAAGTTGCAGTAGAGTGGGTTGAAATAGTAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGCAA-C
* *
8554655 CTCATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGC-AAC
* ** * * * * *
8554699 CTTATCTCTCTGAAGTTGCAGTAGAGTGGGTTGAAATAGCAAG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGCAAC
* * * * *
8554742 TTTCATCTCCCTGAAGTTGTAGTGGAGCAGA-CTGAAGATTGCAGAT
1 CTT-ATCTCCCTGAAGTTGCAGTAGAGCAGATC-GAAG-TCGCA-AC
* * * * * *
8554788 CTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCAAAGCCACAATC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGCAA-C
* * * * ** * * *
8554832 CTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCA-GATCGAAGT-CGCAA-C
* * * * * ** *
8554878 CTCATCTCCCTGAAGTTGTAGTGGAGTAG-CCTGAAGTTAACAAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATC-GAAG-TCGC-AAC
* * * *
8554923 TTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGCAA-C
*
8554967 CTTATCTCTCTGAAGTT
1 CTTATCTCCCTGAAGTT
8554984 ATGGTAGAGC
Statistics
Matches: 270, Mismatches: 88, Indels: 30
0.70 0.23 0.08
Matches are distributed among these distances:
43 8 0.03
44 157 0.58
45 73 0.27
46 32 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGTCGCAAC
Found at i:8554655 original size:133 final size:132
Alignment explanation
Indices: 8554476--8554724 Score: 329
Period size: 133 Copynumber: 1.9 Consensus size: 132
8554466 ATCATAGTAA
* * * *
8554476 ACCTTATCTCTCTGAAGTTGCAGTTGAGCAGGTTGAAGTAACAAGTCGCATCTCCTTGAAGTTGC
1 ACCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTTGC
* *
8554541 AGTGAAACAGA-CTGAAGTTAACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCC
66 AGTGAAACAGATC-GAAG-TAACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCC
8554605 GCAG
129 GCAG
** ** *
8554609 ACCTTATCTCTCTAAAGTTGCAGTAGAGTGGGTTGAAATAGTAAGTCTCATCTCCCTGAAGTTGC
1 ACCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTTGC
* * ** *
8554674 AGTGGAGCAGATCGAAGTCGCAAACCTTATCTCTCTGAAGTTGCAGTAGAG
66 AGTGAAACAGATCGAAGTAACAAACCTTATCTCCCTGAAGTTGCAGTAGAG
8554725 TGGGTTGAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
132 29 0.29
133 69 0.70
134 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (132 bp):
ACCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTTGC
AGTGAAACAGATCGAAGTAACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGC
AG
Found at i:8554682 original size:88 final size:88
Alignment explanation
Indices: 8554570--8554809 Score: 356
Period size: 88 Copynumber: 2.7 Consensus size: 88
8554560 AACAGATCTT
* *
8554570 ATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGCCGCAGACCTTATCTCTCTAAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAGACCTTATCTCTCTAAAGTTGCAGTAG
*
8554635 AGTGGGTTGAAATAGTAAGTCTC
66 AGTGGGTTGAAATAGCAAGTCTC
* *
8554658 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAGACCTTATCTCTCTAAAGTTGCAGTAG
*
8554723 AGTGGGTTGAAATAGCAAGTTTC
66 AGTGGGTTGAAATAGCAAGTCTC
* * * * *
8554746 ATCTCCCTGAAGTTGTAGTGGAGCAGA-CTGAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAG-TCGCAGACCTTATCTCTCTAAAGTTGCAGT
8554810 GGAGCAGATC
Statistics
Matches: 137, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
87 1 0.01
88 112 0.82
89 24 0.18
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (88 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAGACCTTATCTCTCTAAAGTTGCAGTAG
AGTGGGTTGAAATAGCAAGTCTC
Found at i:8554838 original size:133 final size:135
Alignment explanation
Indices: 8554658--8555041 Score: 454
Period size: 135 Copynumber: 2.9 Consensus size: 135
8554648 AGTAAGTCTC
* * * *
8554658 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCGCAAACCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
** * * * * *
8554723 AGTGGGTTGAAA-TA-GCAAGTTTCATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATT-GCA
66 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAG-TTAACA
*
8554785 GATCTT
130 AATCTT
* * * * *
8554791 GTCTCCCTAAAGTTGCAGTGGAGCAGATCAAAGCCACAATCCTTATCTCTCTAAAATTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* *
8554856 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGTAGTGGAGTAGCCTGAAGTTAACAA
66 AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGTTAACAA
*
8554921 ATTTT
131 ATCTT
**
8554926 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTATGGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
* * * * * *
8554991 AGCAAGATAAAAATACACGAA-CCGT-ATCTCCCTAAAGTTGCAGTGGAGCAG
66 AGCAGGATAAAATTAC-CCAAGTC-TCATCTCCCTGAAGTTGTAGTGGAGCAG
8555042 TTGCAGTAGA
Statistics
Matches: 212, Mismatches: 34, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
133 64 0.30
134 4 0.02
135 140 0.66
136 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (135 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGTAG
AGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGTTAACAA
ATCTT
Found at i:8554857 original size:221 final size:223
Alignment explanation
Indices: 8554474--8554903 Score: 580
Period size: 221 Copynumber: 1.9 Consensus size: 223
8554464 TCATCATAGT
* * *
8554474 AAACCTTATCTCTCTGAAGTTGCAGTTGAGCAGGTTGAAGTAACAAGTCGCATCTCCTTGAAGTT
1 AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTT
* *
8554539 GCAGTGAAACAGACTGAAGTTAACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGC
66 GCAGTGAAACAGACTGAAGTTAACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
* * * ** * * **
8554604 CGCAGACCTTATCTCTCTAAAGTTGCAGTAGAGTGGGTTGAAA-TA-GTAAGTCTCATCTCCCTG
131 CACAGACCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
8554667 AAGTTGCAGTGGAGCAGATCGAAGTCGC
196 AAGTTGCAGTGGAGCAGATCGAAGTCGC
** * **
8554695 AAACCTTATCTCTCTGAAGTTGCAGTAGAGTGGGTTGAAATAGCAAGTTTCATCTCCCTGAAGTT
1 AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTT
* * * * * *
8554760 GTAGTGGAGCAGACTGAAGATT-GCAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCAAAG
66 GCAGTGAAACAGACTGAAG-TTAACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAG
8554824 CCACA-ATCCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCC
130 CCACAGA-CCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCC
*
8554888 TGAAGTTGTAGTGGAG
194 TGAAGTTGCAGTGGAG
8554904 TAGCCTGAAG
Statistics
Matches: 179, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
220 1 0.01
221 145 0.81
222 4 0.02
223 29 0.16
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (223 bp):
AAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAGTCGCATCTCCCTGAAGTT
GCAGTGAAACAGACTGAAGTTAACAGATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCAAAGC
CACAGACCTTATCTCTCTAAAATTACAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
AAGTTGCAGTGGAGCAGATCGAAGTCGC
Found at i:8555045 original size:14 final size:14
Alignment explanation
Indices: 8555026--8555055 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8555016 ATCTCCCTAA
*
8555026 AGTTGCAGTGGAGC
1 AGTTGCAGTAGAGC
8555040 AGTTGCAGTAGAGC
1 AGTTGCAGTAGAGC
8555054 AG
1 AG
8555056 ATTAAAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.40, T:0.20
Consensus pattern (14 bp):
AGTTGCAGTAGAGC
Found at i:8555705 original size:25 final size:25
Alignment explanation
Indices: 8555671--8555720 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8555661 ATTTGATTTT
*
8555671 TGTAAGAGGTTACGCACTACGCATA
1 TGTAAGAGGTTACACACTACGCATA
8555696 TGTAAGAGGTTACACACTACGCATA
1 TGTAAGAGGTTACACACTACGCATA
8555721 CTTAATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
TGTAAGAGGTTACACACTACGCATA
Found at i:8557556 original size:126 final size:126
Alignment explanation
Indices: 8557330--8557644 Score: 429
Period size: 126 Copynumber: 2.5 Consensus size: 126
8557320 CGTTAAAACG
** * * * *
8557330 AAGGCAATGTTTGATGTTTAGAAATTCGGGAAATCGTGCCCTATCGTGTTGGGTTTCGATTTCCT
1 AAGGCAATGTTCAATATTTGGAAATTCGGG-AATCGTGCCCTATCGTGCTGGGTTTTGATTTCCT
8557395 ATTTGTCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTT-TCAAATTCTGAAA-C
65 ATTTGTCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTAT-AAATTCT-AAAGC
*
8557457 AAGGCAGTGTTCAATATTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTTGATTTCC-A
1 AAGGCAATGTTCAATATTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTTGATTTCCTA
* * *
8557521 GTTTGTTCAGAATAATTGAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGC
66 -TTTGTCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGC
* * * * *
8557583 AAGGTAATGTTCAATGTTTGGAAATTTGAGGAATCGTGCCTTACCGTGCTGGGTTTTGATTT
1 AAGGCAATGTTCAATATTTGGAAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTTTGATTT
8557645 TTTGTTGGAC
Statistics
Matches: 168, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
125 4 0.02
126 107 0.64
127 57 0.34
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (126 bp):
AAGGCAATGTTCAATATTTGGAAATTCGGGAATCGTGCCCTATCGTGCTGGGTTTTGATTTCCTA
TTTGTCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTATAAATTCTAAAGC
Found at i:8558562 original size:40 final size:41
Alignment explanation
Indices: 8558518--8558607 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 41
8558508 TTTTACATTC
8558518 GCGGCGTTTGCAAT-AAAACGCCGC-AAAAAATAGAGCAATA
1 GCGGCGTTTGCAATCAAAACGCCGCTAAAAAAT-GAGCAATA
*** * *
8558558 GCGGCGTTTTTGATCCAAACGCCGCTAAAAACTGAGCAATA
1 GCGGCGTTTGCAATCAAAACGCCGCTAAAAAATGAGCAATA
*
8558599 GCGGTGTTT
1 GCGGCGTTT
8558608 TTGGCCCAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 11 0.26
41 25 0.60
42 6 0.14
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (41 bp):
GCGGCGTTTGCAATCAAAACGCCGCTAAAAAATGAGCAATA
Found at i:8558588 original size:41 final size:41
Alignment explanation
Indices: 8558533--8558641 Score: 150
Period size: 41 Copynumber: 2.7 Consensus size: 41
8558523 GTTTGCAATA
* *
8558533 AAACGCCGC-AAAAAATAGAGCAATAGCGGCGTTTTTGATCC
1 AAACGCCGCTAAAAACT-GAGCAATAGCGGCGTTTTTGACCC
* *
8558574 AAACGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTGGCCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGACCC
8558615 AAACGCCGCTAAAAACTGTA-CAATAGC
1 AAACGCCGCTAAAAACTG-AGCAATAGC
8558642 TGCACTTTTG
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
41 55 0.89
42 7 0.11
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (41 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGACCC
Found at i:8558651 original size:41 final size:40
Alignment explanation
Indices: 8558533--8558665 Score: 126
Period size: 41 Copynumber: 3.3 Consensus size: 40
8558523 GTTTGCAATA
* ** *
8558533 AAACGCCGC-AAAAAATAGAGCAATAGCGGCGTTTTTGATCC
1 AAACGCCGCTAAAAACT-GAGCAATAGCGGCACTTTTG-GCC
***
8558574 AAACGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTGGCCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCACTTTTGG-CC
* **
8558615 AAACGCCGCTAAAAACTGTA-CAATAGCTGCACTTTTGGAA
1 AAACGCCGCTAAAAACTG-AGCAATAGCGGCACTTTTGGCC
8558655 AAACGCCGCTA
1 AAACGCCGCTA
8558666 TAGGTCAAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
40 11 0.14
41 62 0.77
42 7 0.09
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (40 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGGCACTTTTGGCC
Found at i:8559032 original size:41 final size:41
Alignment explanation
Indices: 8558646--8559024 Score: 623
Period size: 41 Copynumber: 9.2 Consensus size: 41
8558636 AATAGCTGCA
* * *
8558646 CTTTTGGAAAAACGCCGCTATAGGTCAAGGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
* ** *
8558687 CTTCTGGAAAAACGCCGCTATAGATCGAGGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
8558728 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
8558769 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
* * * *
8558810 CTTATGGAAAAAAGTCGTTATAGGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
*
8558851 CTTTTGGGAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
*
8558892 CTTATGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
*
8558933 CTTATGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
*
8558974 CTTTTGGAAAAACGCCGCTATATGCCGATGTTTTAGCGGCG
1 CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
8559015 CTTTTGGAAA
1 CTTTTGGAAA
8559025 GATGCCGCAA
Statistics
Matches: 318, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 318 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (41 bp):
CTTTTGGAAAAACGCCGCTATAGGCCGATGTTTTAGCGGCG
Found at i:8559368 original size:18 final size:18
Alignment explanation
Indices: 8559339--8559389 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
8559329 TTGTCCCTTG
8559339 TTATATATATATATTAA-A
1 TTATA-ATATATATTAAGA
*
8559357 CTTCTAATATATATTAAGA
1 -TTATAATATATATTAAGA
8559376 TTATAATATATATT
1 TTATAATATATATT
8559390 TAGGGTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATAATATATATTAAGA
Found at i:8559829 original size:15 final size:15
Alignment explanation
Indices: 8559809--8559840 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8559799 TTTAATGTAG
*
8559809 AAGATAAATGTATAT
1 AAGATAAATATATAT
8559824 AAGATAAATATATAT
1 AAGATAAATATATAT
8559839 AA
1 AA
8559841 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:8559879 original size:24 final size:23
Alignment explanation
Indices: 8559812--8559879 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
8559802 AATGTAGAAG
* *
8559812 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
8559837 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
8559861 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
8559880 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:8564953 original size:15 final size:15
Alignment explanation
Indices: 8564909--8564964 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
8564899 AACGACATGT
8564909 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
8564925 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
8564938 ATATTATTTAATTAA
1 ATATTATTTAATTAA
*
8564953 ATATTATCTAAT
1 ATATTATTTAAT
8564965 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 15 0.43
16 5 0.14
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:8565091 original size:9 final size:9
Alignment explanation
Indices: 8565079--8565290 Score: 114
Period size: 9 Copynumber: 23.4 Consensus size: 9
8565069 CATAATTTAC
8565079 ATAACTTAT
1 ATAACTTAT
*
8565088 ATAACATAT
1 ATAACTTAT
*
8565097 ATAACTTAC
1 ATAACTTAT
8565106 ATAACTTAT
1 ATAACTTAT
8565115 ATAAC----
1 ATAACTTAT
8565120 ATAACTTAT
1 ATAACTTAT
8565129 ATAACTTAT
1 ATAACTTAT
*
8565138 ATAACTTAG
1 ATAACTTAT
*
8565147 ATAA-ATAT
1 ATAACTTAT
*
8565155 ATAACTTAC
1 ATAACTTAT
*
8565164 ATAACTTAC
1 ATAACTTAT
8565173 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
8565186 ATATTTTATAT
1 ATA-ACT-TAT
* *
8565197 CATAATTTAC
1 -ATAACTTAT
*
8565207 ATAACTTAC
1 ATAACTTAT
8565216 ATAACTTAT
1 ATAACTTAT
*
8565225 ATAACTTAG
1 ATAACTTAT
*
8565234 ATAA-ATAT
1 ATAACTTAT
* *
8565242 ATAATTTAC
1 ATAACTTAT
*
8565251 ATAA-ATAT
1 ATAACTTAT
* *
8565259 ATATCATAT
1 ATAACTTAT
* *
8565268 CATAAATTAC
1 -ATAACTTAT
*
8565278 ATAACTTAC
1 ATAACTTAT
8565287 ATAA
1 ATAA
8565291 TACTTAAATA
Statistics
Matches: 160, Mismatches: 29, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
5 5 0.03
8 17 0.11
9 112 0.70
10 8 0.05
11 8 0.05
12 6 0.04
13 4 0.03
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (9 bp):
ATAACTTAT
Found at i:8565091 original size:18 final size:18
Alignment explanation
Indices: 8565069--8565290 Score: 134
Period size: 18 Copynumber: 12.3 Consensus size: 18
8565059 TATTTGATAT
* *
8565069 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
8565087 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
8565105 CATAACTTATAT-A---A
1 CATAACTTATATAACTTA
8565119 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
8565137 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
8565154 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
8565172 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
8565196 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
8565215 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
8565233 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
8565250 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
8565267 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
8565286 CATAA
1 CATAA
8565291 TACTTAAATA
Statistics
Matches: 158, Mismatches: 32, Indels: 28
0.72 0.15 0.13
Matches are distributed among these distances:
14 13 0.08
15 1 0.01
17 39 0.25
18 71 0.45
19 11 0.07
20 5 0.03
21 4 0.03
22 4 0.03
23 4 0.03
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:8565122 original size:41 final size:40
Alignment explanation
Indices: 8565077--8565159 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 40
8565067 ATCATAATTT
*
8565077 ACATAACTTATATAACATATATAACTTACATAACTTATATA
1 ACATAACTTATATAACATATATAACTTACATAA-ATATATA
* *
8565118 ACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ACATAACTTATATAACATATATAACTTACATAAATATATA
8565158 AC
1 AC
8565160 TTACATAACT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 8 0.21
41 31 0.79
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.36
Consensus pattern (40 bp):
ACATAACTTATATAACATATATAACTTACATAAATATATA
Found at i:8565123 original size:14 final size:14
Alignment explanation
Indices: 8565077--8565133 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
8565067 ATCATAATTT
8565077 ACATAACTTATATA
1 ACATAACTTATATA
*
8565091 ACAT-A--TATAACTT
1 ACATAACTTAT-A-TA
8565104 ACATAACTTATATA
1 ACATAACTTATATA
8565118 ACATAACTTATATA
1 ACATAACTTATATA
8565132 AC
1 AC
8565134 TTATATAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
11 3 0.08
12 1 0.03
13 6 0.17
14 22 0.61
15 1 0.03
16 3 0.08
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (14 bp):
ACATAACTTATATA
Found at i:8565124 original size:23 final size:23
Alignment explanation
Indices: 8565069--8565142 Score: 94
Period size: 23 Copynumber: 3.0 Consensus size: 23
8565059 TATTTGATAT
*
8565069 CATAATTTACATAACTTATATAA
1 CATAACTTACATAACTTATATAA
8565092 CATATATAACTTACATAACTTATATAA
1 C----ATAACTTACATAACTTATATAA
*
8565119 CATAACTTATATAACTTATATAA
1 CATAACTTACATAACTTATATAA
8565142 C
1 C
8565143 TTAGATAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
23 23 0.51
27 22 0.49
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (23 bp):
CATAACTTACATAACTTATATAA
Found at i:8565171 original size:26 final size:26
Alignment explanation
Indices: 8565065--8565118 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
8565055 AATATATTTG
* *
8565065 ATATCATAATTTACATAACTTATATAA
1 ATAT-ATAACTTACATAACTTACATAA
*
8565092 CATATATAACTTACATAACTTATATAA
1 -ATATATAACTTACATAACTTACATAA
8565119 CATAACTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (26 bp):
ATATATAACTTACATAACTTACATAA
Found at i:8570492 original size:13 final size:14
Alignment explanation
Indices: 8570476--8570504 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8570466 TTCTAAATAT
8570476 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
8570489 TTATAATTGTTTAA
1 TTATAATTGTTTAA
8570503 TT
1 TT
8570505 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:8570942 original size:21 final size:21
Alignment explanation
Indices: 8570914--8570972 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
8570904 TTAGAGCGGA
8570914 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
8570935 GGTAGCAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
8570956 GGCAGCAGCGAGGGAGG
1 GGCAGCAGAGAGGGAGG
8570973 TAGAGCATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.27, C:0.17, G:0.54, T:0.02
Consensus pattern (21 bp):
GGCAGCAGAGAGGGAGGCAGC
Found at i:8571410 original size:43 final size:43
Alignment explanation
Indices: 8571349--8571562 Score: 338
Period size: 43 Copynumber: 5.0 Consensus size: 43
8571339 TTTGTGGGAA
* * * *
8571349 AAACGCCGCTAAAGGCCATAACTTTTAGGGGCACTTTTTTACC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
** *
8571392 AAACGCCATTAAAGGCCATGACTTCTAGCGGCGCTTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGC-TTTTTTTCC
*
8571436 AAACGCCGCTAAAGGCCATGACTTTTAGTGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
8571479 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
*
8571522 AAACGCCACTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
8571563 TAATAAACGC
Statistics
Matches: 157, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
43 119 0.76
44 38 0.24
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
Found at i:8571563 original size:87 final size:87
Alignment explanation
Indices: 8571349--8571562 Score: 340
Period size: 87 Copynumber: 2.5 Consensus size: 87
8571339 TTTGTGGGAA
* * * * *
8571349 AAACGCCGCTAAAGGCCATAACTTTTAGGGGCACTTTTTTACCAAACGCCATTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCACTAAAGGCCATGAC
8571414 TTCTAGCGGCGCTTTTTTTTCC
66 TTCTAGCGGCGCTTTTTTTTCC
* *
8571436 AAACGCCGCTAAAGGCCATGACTTTTAGTGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCACTAAAGGCCATGAC
*
8571501 TTTTAGCGGCGC-TTTTTTTCC
66 TTCTAGCGGCGCTTTTTTTTCC
*
8571522 AAACGCCACTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT
8571563 TAATAAACGC
Statistics
Matches: 118, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
86 48 0.41
87 70 0.59
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (87 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCACTAAAGGCCATGAC
TTCTAGCGGCGCTTTTTTTTCC
Done.