Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 33 of 253
Found at i:8572663 original size:19 final size:18
Alignment explanation
Indices: 8572639--8572678 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8572629 TCATTGTATT
8572639 TGAC-AAGAAACATAGAAAA
1 TGACAAAGAAA-AT-GAAAA
8572658 TGACAAAGAAAATGAAAA
1 TGACAAAGAAAATGAAAA
8572676 TGA
1 TGA
8572679 AATAAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.12
Consensus pattern (18 bp):
TGACAAAGAAAATGAAAA
Found at i:8573024 original size:11 final size:11
Alignment explanation
Indices: 8573008--8573050 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
8572998 TAGAATATAC
8573008 CCCATACCTTG
1 CCCATACCTTG
*
8573019 CCCATACCTTT
1 CCCATACCTTG
*
8573030 CCCATACC-TA
1 CCCATACCTTG
8573040 CCCATACCTTG
1 CCCATACCTTG
8573051 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:8573045 original size:21 final size:22
Alignment explanation
Indices: 8573008--8573049 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8572998 TAGAATATAC
*
8573008 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
8573030 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
8573050 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:8573620 original size:16 final size:17
Alignment explanation
Indices: 8573588--8573637 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
8573578 CGTTTACGGT
* *
8573588 ACTATTTACGTATATATC
1 ACTATTCACATATATA-C
8573606 ACTATTCACATATATGAC
1 ACTATTCACATATAT-AC
8573624 ACTATTCACATATA
1 ACTATTCACATATA
8573638 CGGTATTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (17 bp):
ACTATTCACATATATAC
Found at i:8577717 original size:11 final size:11
Alignment explanation
Indices: 8577698--8577740 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
8577688 TAGAATATAC
8577698 CCCATACCTTG
1 CCCATACCTTG
* *
8577709 CCTATACCTTT
1 CCCATACCTTG
*
8577720 CCCATACC-TA
1 CCCATACCTTG
8577730 CCCATACCTTG
1 CCCATACCTTG
8577741 GAAAGGTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.21, C:0.44, G:0.05, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:8589967 original size:26 final size:26
Alignment explanation
Indices: 8589938--8590045 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8589928 TAGTACAAAT
8589938 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8589964 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8589990 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8590016 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8590042 TGAT
1 TGAT
8590046 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8591562 original size:26 final size:26
Alignment explanation
Indices: 8591533--8591585 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
8591523 TTTACAGTTT
8591533 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
8591559 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
8591585 T
1 T
8591586 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:8595807 original size:26 final size:24
Alignment explanation
Indices: 8595777--8595826 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
8595767 TAAATAAAAA
*
8595777 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
8595803 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
8595827 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:8595846 original size:21 final size:21
Alignment explanation
Indices: 8595797--8595855 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
8595787 ATAATAAATC
*
8595797 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
8595817 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
8595839 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
8595856 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:8598981 original size:21 final size:21
Alignment explanation
Indices: 8598927--8598982 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 21
8598917 TTTATATTAC
*
8598927 ATATATAT-TTTAATATCATATT
1 ATATATATATTT--TATCACATT
*
8598949 AT-TCATACATTTTATCACATT
1 ATAT-ATATATTTTATCACATT
8598970 ATATATATATTTT
1 ATATATATATTTT
8598983 TATAACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 19 0.68
22 6 0.21
23 3 0.11
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATATATATTTTATCACATT
Found at i:8599005 original size:25 final size:25
Alignment explanation
Indices: 8598977--8599024 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8598967 ATTATATATA
8598977 TATTTTTATA-ACTATATTACGTATG
1 TATTTTTA-ACACTATATTACGTATG
*
8599002 TATTTTTAACGCTATATTACGTA
1 TATTTTTAACACTATATTACGTA
8599025 CATACTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.50
Consensus pattern (25 bp):
TATTTTTAACACTATATTACGTATG
Found at i:8599033 original size:25 final size:25
Alignment explanation
Indices: 8598988--8599035 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8598978 ATTTTTATAA
** *
8598988 CTATATTACGTATGTATTTTTAACG
1 CTATATTACGTACATACTTTTAACG
8599013 CTATATTACGTACATACTTTTAA
1 CTATATTACGTACATACTTTTAA
8599036 TATCATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (25 bp):
CTATATTACGTACATACTTTTAACG
Found at i:8599181 original size:21 final size:20
Alignment explanation
Indices: 8599134--8599174 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8599124 TCTAATATAT
*
8599134 ATATTATGTATATCTTTTTA
1 ATATTATGTATAACTTTTTA
8599154 ATATTATGTATACACTTTTTA
1 ATATTATGTATA-ACTTTTTA
8599175 TTCTTATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTATAACTTTTTA
Found at i:8604120 original size:8 final size:8
Alignment explanation
Indices: 8604107--8604139 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
8604097 GGAAAATAAA
8604107 AATAAAAT
1 AATAAAAT
8604115 AAT-AAAT
1 AATAAAAT
8604122 AATAAAAT
1 AATAAAAT
*
8604130 AAAAAAAT
1 AATAAAAT
8604138 AA
1 AA
8604140 AACTAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AATAAAAT
Found at i:8604130 original size:20 final size:19
Alignment explanation
Indices: 8604099--8604150 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
8604089 GTGACCAAGG
*
8604099 AAAATAAAAATAAAATAATA
1 AAAAT-AAAATAAAAAAATA
8604119 AATAATAAAATAAAAAAATA
1 AA-AATAAAATAAAAAAATA
*
8604139 AAACTAAAATAA
1 AAAATAAAATAA
8604151 TTATTTTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 9 0.31
20 17 0.59
21 3 0.10
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAATAAAATAAAAAAATA
Found at i:8606900 original size:21 final size:21
Alignment explanation
Indices: 8606848--8606910 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
8606838 TGAAGAGAGT
8606848 CACATGGCCGTGT-GACTAAGG
1 CACATGGCCGTGTGGACT-AGG
* *
8606869 CACACGCCCGTGTGGACTAGG
1 CACATGGCCGTGTGGACTAGG
* *
8606890 GACATGGCCGTG-GGAATAGG
1 CACATGGCCGTGTGGACTAGG
8606910 C
1 C
8606911 TGTGTAACTC
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
20 7 0.21
21 23 0.68
22 4 0.12
ACGTcount: A:0.22, C:0.25, G:0.37, T:0.16
Consensus pattern (21 bp):
CACATGGCCGTGTGGACTAGG
Found at i:8607639 original size:5 final size:5
Alignment explanation
Indices: 8607631--8607678 Score: 55
Period size: 5 Copynumber: 9.4 Consensus size: 5
8607621 AAGGAAAAGA
8607631 AAAAT AAAAT AAAAAAT AAAAT AAAAT -AAAT -AAAT AAAACT AAAAT
1 AAAAT AAAAT --AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT
8607677 AA
1 AA
8607679 TTATTTTAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 8 0.21
5 21 0.54
6 5 0.13
7 5 0.13
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:8607646 original size:18 final size:17
Alignment explanation
Indices: 8607625--8607678 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
8607615 ATGACCAAGG
*
8607625 AAAAGAAAAATAAAATA
1 AAAAAAAAAATAAAATA
*
8607642 AAAAATAAAATAAAATA
1 AAAAAAAAAATAAAATA
*
8607659 AATAAATAAAACTAAAATA
1 AA-AAA-AAAAATAAAATA
8607678 A
1 A
8607679 TTATTTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 17 0.55
18 3 0.10
19 11 0.35
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAAAAAAAATAAAATA
Found at i:8607651 original size:17 final size:18
Alignment explanation
Indices: 8607631--8607678 Score: 80
Period size: 17 Copynumber: 2.7 Consensus size: 18
8607621 AAGGAAAAGA
8607631 AAAATAAAATAAA-AAAT
1 AAAATAAAATAAATAAAT
8607648 AAAATAAAATAAATAAAT
1 AAAATAAAATAAATAAAT
8607666 AAAACTAAAATAA
1 AAAA-TAAAATAA
8607679 TTATTTTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.45
18 8 0.28
19 8 0.28
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAATAAAATAAATAAAT
Found at i:8612388 original size:16 final size:17
Alignment explanation
Indices: 8612353--8612393 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
8612343 GTTTTAAATA
*
8612353 TTTTATAAAATATTTAAT
1 TTTTA-AAAATATATAAT
8612371 TTTTAAAAATATAT-AT
1 TTTTAAAAATATATAAT
8612387 TTTTAAA
1 TTTTAAA
8612394 GGGAAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 8 0.36
18 5 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTAAAAATATATAAT
Found at i:8612973 original size:18 final size:18
Alignment explanation
Indices: 8612950--8613012 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
8612940 AACTTTTCGA
8612950 GTGAAATAAAATTTCTTT
1 GTGAAATAAAATTTCTTT
8612968 GTGAAAT--AATTT-TTT
1 GTGAAATAAAATTTCTTT
*
8612983 CGAGTGAAATAAAATTTCTTA
1 ---GTGAAATAAAATTTCTTT
8613004 GTGAAATAA
1 GTGAAATAA
8613013 TTTTTGGTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
15 3 0.08
16 5 0.13
18 23 0.61
20 5 0.13
21 2 0.05
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.40
Consensus pattern (18 bp):
GTGAAATAAAATTTCTTT
Found at i:8612990 original size:36 final size:36
Alignment explanation
Indices: 8612943--8613017 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
8612933 AAACATTAAC
*
8612943 TTTTCGAGTGAAATAAAATTTCTTTGTGAAATAATT
1 TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
8612979 TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
1 TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
8613015 TTT
1 TTT
8613018 GGTATCTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.45
Consensus pattern (36 bp):
TTTTCGAGTGAAATAAAATTTCTTAGTGAAATAATT
Found at i:8616101 original size:626 final size:614
Alignment explanation
Indices: 8614730--8616330 Score: 2310
Period size: 626 Copynumber: 2.6 Consensus size: 614
8614720 CAGGTTCCAT
* * * *
8614730 CTTCCATCTTCAAGATTTCTTCTTTGAAAGCTATT-AGTCTCTCCAGCAATAGCCTATCAGGTAG
1 CTTCGATCTTCAACATTTCTTCTTTGAGA-CTATTGA-TCTCTCCAACAATAGCCTATCAGGTAG
*
8614794 TTTGCCTAATGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTGAGTTGGAATGAAT
64 TTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTGAGTTGGAATGAAT
* *
8614859 TATCTGGTAACATTACATTTGGCATGGGCAAATGCAACAACCTTAAAAATTTGTCATTGTCTTAT
129 TATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTT-AAAATTTGTCATTGTCCTAT
8614924 AATCAATTTACGGGAATCATTCCAAGAAGTATTGGAAATATGACTCTACTTGAAGAATTATATTT
193 AATCAATTTACGGGAATCATTCCAAGAAGTATTGGAAATATGACTCTACTTGAAGAATTATATTT
*
8614989 GGGGTTTAATAATCTAGAAGGTACTGAATTTCTTTGGTTTCTTTAGTTTAAAGTATTTTCTTTAT
258 GGGGTTTAATAATCTAGAAGGTACTGAATTTCTTTGGTTTTTTTAGTTTAAAGTATTTTCTTTAT
* * **
8615054 ATAAGAGTTTGATTTGTAATAGATAACAAAAACTAAGAACTTTTTATTTCATTGGAGGAAAAATA
323 ATAAGAGTTTGATTTGTAATAGATAAC-AAAAGTAAGAACATTTTATTTCATTCAAGGAAAAATA
* * * * *
8615119 GATACTTTGATGAAAAATAAATGCTGAAATATATTAAAGTCTAACATCTCCAAATTATTGTAGAA
387 AATACTTTGATGAAAAATAAATGATGAAAAATATTAAAATCTAACATCTCCAAATTATCGTAGAA
*
8615184 CAGAAAAGAAAACCTCTTTGACTTATGCTAAAAAAGTAGGTAGTTTAACACATTGATTTTTCGAC
452 CAGAAAAGAAAACCTCTTTGACTTATGCTAAAAAAGTAGGTAGTTTAACACATTGATTTCTCGAC
* * *
8615249 TATGTCTGTAGGTCAAATTCCTGAGGAAATCGGTAATCTTCTTGGTTTGGAACTGCTTAATATTA
517 TATGTCTGCAGGTCAAATTCCTAAGGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTAATATTA
* * *
8615314 AAGCAATTAAAGGCCTTACTGGTCAGATTCCGA
582 AAGCAATTAAAGGCCTTACAGGTCAGATACCAA
*
8615347 CTTCGATCTTCAACATTACTTCTTTGAAGACTATTGATCTCTCCAACAATAGCCTATCAGGTAGT
1 CTTCGATCTTCAACATTTCTTCTTTG-AGACTATTGATCTCTCCAACAATAGCCTATCAGGTAGT
8615412 TTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTGAGTTGGAATGAATT
65 TTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTGAGTTGGAATGAATT
* *
8615477 ATCTGGTAGCATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAGATTTGTCGTTGTCCTATA
130 ATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAA-ATTTGTCATTGTCCTATA
*
8615542 ATCAATTTATGGGAATCATTCCAAGAAGTATTGGAAATATGACTCTACTTGAAGAATTATATTTG
194 ATCAATTTACGGGAATCATTCCAAGAAGTATTGGAAATATGACTCTACTTGAAGAATTATATTTG
8615607 GGGTTTAATAATCTAGAAGGTACTGAATTTCTTTGGTTTTTTTAGTTTAAAGTATTTTCTTTATA
259 GGGTTTAATAATCTAGAAGGTACTGAATTTCTTTGGTTTTTTTAGTTTAAAGTATTTTCTTTATA
* * *
8615672 TAAGTGTTTGATTTGTAATAGATAACAAAAGTAAGAGCATTTTATTTTATTCAAGGCAAAATAGT
324 TAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTTCATTCAAGG-AAAA-A--
* * *
8615737 TCAAAATAGTTAAATTGATGAAAACA-AATATGATTAAAAATATTAAAATCTAACATCTGCAAAT
385 T--AAATA-CT---TTGATGAAAA-ATAA-ATGATGAAAAATATTAAAATCTAACATCTCCAAAT
* *
8615801 TA-CGTAGAACAGAAAAGAAAACCTCTTTGACTTATGCTAACAAAA-TAGGTAGTTTGACACCTT
442 TATCGTAGAACAGAAAAGAAAACCTCTTTGACTTATGCTAA-AAAAGTAGGTAGTTTAACACATT
*
8615864 GATTTCTCGACTATGTGTGCAGGTCAAATTCCTAAGGAAATCGGTAATCTTCTTGGTTTGGAAAT
506 GATTTCTCGACTATGTCTGCAGGTCAAATTCCTAAGGAAATCGGTAATCTTCTTGGTTTGGAAAT
8615929 GCTTAATATTAAAGCAATTAAAGGCCTTACAGGTCAGATACCAA
571 GCTTAATATTAAAGCAATTAAAGGCCTTACAGGTCAGATACCAA
*
8615973 CTTCGATCTTCAACATTTCTTCTCTAGAGACTATTGATCTCTCCAACAATAGCCTATCAGGTAGT
1 CTTCGATCTTCAACATTTCTTCT-TTGAGACTATTGATCTCTCCAACAATAGCCTATCAGGTAGT
* * *
8616038 TTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACTTGCA-TAGAAATGAAT
65 TTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTG-AGTTGGAATGAAT
* ** * * *
8616102 TATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAAATGTTGGCATTGTCCGT-
129 TATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAAT-TTGTCATTGTCC-TA
* * * * * * *
8616166 GAATCAATTTACGGGGATCATTCCAAGAAGTATTGGAAATCTGACACAACTCGAA-AGATTAGAT
192 TAATCAATTTACGGGAATCATTCCAAGAAGTATTGGAAATATGACTCTACTTGAAGA-ATTATAT
** ** * * *
8616230 TTGGCATGGAATAA-CTTAGAAGGTATTAAATTTTCTTT-G-TTTCTT--TTTAAAGTATTTT-T
256 TTGGGGTTTAATAATC-TAGAAGGTACTGAA-TTTCTTTGGTTTTTTTAGTTTAAAGTATTTTCT
*
8616289 TTCATAAAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGA
319 TT-ATATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGA
8616331 TTTGATTTGT
Statistics
Matches: 893, Mismatches: 67, Indels: 42
0.89 0.07 0.04
Matches are distributed among these distances:
616 27 0.03
617 333 0.37
618 4 0.00
620 1 0.00
622 7 0.01
623 51 0.06
625 9 0.01
626 413 0.46
627 48 0.05
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (614 bp):
CTTCGATCTTCAACATTTCTTCTTTGAGACTATTGATCTCTCCAACAATAGCCTATCAGGTAGTT
TGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTGAGTTGGAATGAATTA
TCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAATTTGTCATTGTCCTATAAT
CAATTTACGGGAATCATTCCAAGAAGTATTGGAAATATGACTCTACTTGAAGAATTATATTTGGG
GTTTAATAATCTAGAAGGTACTGAATTTCTTTGGTTTTTTTAGTTTAAAGTATTTTCTTTATATA
AGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTTCATTCAAGGAAAAATAAATA
CTTTGATGAAAAATAAATGATGAAAAATATTAAAATCTAACATCTCCAAATTATCGTAGAACAGA
AAAGAAAACCTCTTTGACTTATGCTAAAAAAGTAGGTAGTTTAACACATTGATTTCTCGACTATG
TCTGCAGGTCAAATTCCTAAGGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTAATATTAAAGC
AATTAAAGGCCTTACAGGTCAGATACCAA
Found at i:8616335 original size:30 final size:31
Alignment explanation
Indices: 8616296--8616361 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 31
8616286 TTTTTCATAA
8616296 AAGAGTTTGATTTGTAATAGATAACAAAAGT
1 AAGAGTTTGATTTGTAATAGATAACAAAAGT
*
8616327 AAGA-TTTGATTTGTAATAGATTACAAAAGT
1 AAGAGTTTGATTTGTAATAGATAACAAAAGT
8616357 AAGAG
1 AAGAG
8616362 CATTTTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 29 0.88
31 4 0.12
ACGTcount: A:0.45, C:0.03, G:0.20, T:0.32
Consensus pattern (31 bp):
AAGAGTTTGATTTGTAATAGATAACAAAAGT
Found at i:8619043 original size:626 final size:626
Alignment explanation
Indices: 8617852--8619861 Score: 3903
Period size: 626 Copynumber: 3.2 Consensus size: 626
8617842 TGATTTCATC
* * *
8617852 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTCAAGATTATTGATCTCTCCAGCAA
1 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
8617917 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACT
66 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACT
* * *
8617982 TGCATAGAAATGAATTATCTGGTAACATTCCGTTAAGTATGGACAAATGCAACAACCTTAAGATG
131 TGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATG
8618047 TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
196 TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
8618112 CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
261 CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
8618177 AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
326 AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
8618242 TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
391 TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
8618307 TAACATCTCCAAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
456 TAACATCTCCAAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
8618372 AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCACATTCCTGAGGAAATCGGTAATCTTC
521 AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCACATTCCTGAGGAAATCGGTAATCTTC
8618437 TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
586 TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
8618478 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
1 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
*
8618543 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTTCT
66 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACT
8618608 TGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATG
131 TGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATG
8618673 TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
196 TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
8618738 CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
261 CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
8618803 AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
326 AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
8618868 TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
391 TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
8618933 TAACATCTCCAAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
456 TAACATCTCCAAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
8618998 AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCACATTCCTGAGGAAATCGGTAATCTTC
521 AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCACATTCCTGAGGAAATCGGTAATCTTC
8619063 TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
586 TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
8619104 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
1 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
*
8619169 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTTCT
66 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACT
8619234 TGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATG
131 TGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATG
8619299 TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
196 TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
8619364 CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
261 CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
8619429 AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
326 AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
8619494 TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
391 TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
** *
8619559 TAACATCTTTAAATTACTCTATTATAGAAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
456 TAACATCTCCAAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
*
8619624 AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCAAATTCCTGAGGAAATCGGTAATCTTC
521 AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCACATTCCTGAGGAAATCGGTAATCTTC
8619689 TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
586 TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
8619730 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
1 ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
*
8619795 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACT
66 TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACT
8619860 TG
131 TG
8619862 AGTTGGAATG
Statistics
Matches: 1371, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
626 1371 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (626 bp):
ACAGGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAACAA
TAGCCTATCAGGTAGTTTGCCTAGTGATATGTGTCAACATCTTCCCAAGCTTGAAGTGCTTTACT
TGCATAGAAATGAACTATCTGGTACCATTCCGTCAAGTATGGACAAATGCAACAACCTTAAGATG
TTGGCATTGTCCACGAACCAATTTTCGGGGATCATTCCAAGAACTATTGGAAATTTGACACGACT
CGAAGAATTAGATTTGAGGTTGAATAACTTAGAAGGTATTGAATTTCCTTGATTTCTTTAGTTTA
AAGTATTTTCTTTGTATAAGAGTTTGATTTGTAATAGATAACAAAAGTAAGAACATTTTATTACA
TTCAAGGCAAAATAGTTCAAAATAGTTAATTTGATGAAAAAAATATGCTTAAATATATTAAAATC
TAACATCTCCAAATTACTCTATTATAGGAAAGAAAACCACTTTGATTTACACTAACAAAATAGGT
AGTTTAACACCTTGATGTTTCGATTATGTCTGCAGGTCACATTCCTGAGGAAATCGGTAATCTTC
TTGGTTTGGAAATGCTTATTATTCAAGCAATTAAAGGTCTT
Found at i:8619967 original size:30 final size:31
Alignment explanation
Indices: 8619927--8619993 Score: 118
Period size: 30 Copynumber: 2.2 Consensus size: 31
8619917 TTTCTTTATA
8619927 TAAGAGTTTGATTTGTAATAGATAACAAAAG
1 TAAGAGTTTGATTTGTAATAGATAACAAAAG
*
8619958 TAAGA-TTTGATTTGTAATAGATTACAAAAG
1 TAAGAGTTTGATTTGTAATAGATAACAAAAG
8619988 TAAGAG
1 TAAGAG
8619994 CATTTTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 29 0.85
31 5 0.15
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (31 bp):
TAAGAGTTTGATTTGTAATAGATAACAAAAG
Found at i:8624373 original size:13 final size:13
Alignment explanation
Indices: 8624355--8624381 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8624345 CTTTTGCTAA
8624355 GGATTTTATTGTT
1 GGATTTTATTGTT
8624368 GGATTTTATTGTT
1 GGATTTTATTGTT
8624381 G
1 G
8624382 CTTTTCCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59
Consensus pattern (13 bp):
GGATTTTATTGTT
Found at i:8627059 original size:30 final size:29
Alignment explanation
Indices: 8627025--8627081 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 29
8627015 TATACATTTT
8627025 ATTATATATATTATTT-TTATTCTATTATAC
1 ATTATATA-ATTATTTATTATT-TATTATAC
8627055 ATTATATAATTATTTATTATTTATTAT
1 ATTATATAATTATTTATTATTTATTAT
8627082 TATGTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTATATAATTATTTATTATTTATTATAC
Found at i:8627082 original size:7 final size:7
Alignment explanation
Indices: 8626941--8627082 Score: 60
Period size: 7 Copynumber: 19.1 Consensus size: 7
8626931 GTAAAAATGG
8626941 TTATTAT
1 TTATTAT
*
8626948 ATATTAT
1 TTATTAT
8626955 TT-TTAT
1 TTATTAT
8626961 TT-TTAT
1 TTATTAT
*
8626967 TTGTGTAT
1 TTAT-TAT
8626975 TGT-TTAT
1 T-TATTAT
8626982 TATATTAT
1 T-TATTAT
*
8626990 TTACATTTT
1 TT--ATTAT
8626999 ATTATATAT
1 -TTAT-TAT
*
8627008 TT-TGAT
1 TTATTAT
*
8627014 TTATACATT
1 TTAT-TA-T
8627023 TTATTAT
1 TTATTAT
8627030 ATATATTAT
1 -T-TATTAT
8627039 TT-TTAT
1 TTATTAT
8627045 TCTATTAT
1 T-TATTAT
**
8627053 ACATTAT
1 TTATTAT
*
8627060 ATAATTAT
1 -TTATTAT
8627068 TTATTAT
1 TTATTAT
8627075 TTATTAT
1 TTATTAT
8627082 T
1 T
8627083 ATGTATAATT
Statistics
Matches: 106, Mismatches: 13, Indels: 32
0.70 0.09 0.21
Matches are distributed among these distances:
6 21 0.20
7 38 0.36
8 27 0.25
9 18 0.17
10 2 0.02
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (7 bp):
TTATTAT
Found at i:8627801 original size:40 final size:40
Alignment explanation
Indices: 8627679--8627926 Score: 178
Period size: 41 Copynumber: 6.3 Consensus size: 40
8627669 TAATATACAT
* * * * *
8627679 TAGCGGCGTTTGTC-CGAAACGCCACTAAAAGCTAAACTA
1 TAGCGGCGTTTTTCTCAAAACGCCACTAAAAGCTGATCAA
* * *
8627718 TAGCGGCGTTTTTTTGGCAAAAACGCCACTAAAAACTGGTCAA
1 TAGCGGCGTTTTTCT--C-AAAACGCCACTAAAAGCTGATCAA
*
8627761 TAGCGGCGTTTTTCTCAAAACGCTACTAAAAGCTGATCAA
1 TAGCGGCGTTTTTCTCAAAACGCCACTAAAAGCTGATCAA
8627801 TAGCGGCGTTTTAATCTC-AAACGCCACT--AA----AT---
1 TAGCGGCGTTTT--TCTCAAAACGCCACTAAAAGCTGATCAA
* * * *
8627833 T-GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAA
1 TAGCGGCGTTTTTCT-CAAAACGCCACTAAAAGCTGATCAA
* * * * * *
8627873 TTGTGGTGTTTTTATCCAAAACGCCACTAAAAACTGATTAA
1 TAGCGGCGTTTTTCT-CAAAACGCCACTAAAAGCTGATCAA
8627914 TAGCGGCGTTTTT
1 TAGCGGCGTTTTT
8627927 GGTCCAAACG
Statistics
Matches: 167, Mismatches: 24, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
29 2 0.01
30 1 0.01
31 19 0.11
32 1 0.01
33 2 0.01
35 2 0.01
37 2 0.01
39 14 0.08
40 34 0.20
41 53 0.32
42 5 0.03
43 32 0.19
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (40 bp):
TAGCGGCGTTTTTCTCAAAACGCCACTAAAAGCTGATCAA
Found at i:8627884 original size:72 final size:71
Alignment explanation
Indices: 8627763--8627903 Score: 176
Period size: 72 Copynumber: 2.0 Consensus size: 71
8627753 CTGGTCAATA
* * *
8627763 GCGGCGTTTTTCTCAAAACGCTACTAAAAGCTGATCAATAGCGGCGTTTTAATCTC-AAACGCCA
1 GCGGCGTTTTTCTCAAAACGCCACAAAAAACTGATCAATAGCGGCGTTTTAATC-CAAAACGCCA
8627827 CTAAATT
65 CTAAATT
* * * * * *
8627834 GCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATCAATTGTGGTGTTTTTATCCAAAACGCCA
1 GCGGCGTTTTTCT-CAAAACGCCACAAAAAACTGATCAATAGCGGCGTTTTAATCCAAAACGCCA
8627899 CTAAA
65 CTAAA
8627904 AACTGATTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
71 13 0.22
72 46 0.78
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (71 bp):
GCGGCGTTTTTCTCAAAACGCCACAAAAAACTGATCAATAGCGGCGTTTTAATCCAAAACGCCAC
TAAATT
Found at i:8627895 original size:41 final size:40
Alignment explanation
Indices: 8627830--8627945 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 40
8627820 AACGCCACTA
8627830 AATTGCGGCGTTTTTGTCCCAAACGCCACAAAAAACTGATC
1 AATTGCGGCGTTTTTGT-CCAAACGCCACAAAAAACTGATC
* * * * *
8627871 AATTGTGGTGTTTTTATCCAAAACGCCACTAAAAACTGATT
1 AATTGCGGCGTTTTTGTCC-AAACGCCACAAAAAACTGATC
* *
8627912 AATAGCGGCGTTTTTGGTCCAAACGCCGCAAAAA
1 AATTGCGGCGTTTTT-GTCCAAACGCCACAAAAA
8627946 GTTTAGCAGG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.03
41 57 0.92
42 3 0.05
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (40 bp):
AATTGCGGCGTTTTTGTCCAAACGCCACAAAAAACTGATC
Found at i:8628073 original size:28 final size:26
Alignment explanation
Indices: 8628021--8628073 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
8628011 TATTATTTTC
* *
8628021 TTATTTTTATTTTGAAGTTAATTTAA
1 TTATTTTTATTTTAAAGCTAATTTAA
*
8628047 TTATTTTTGTATTTAAAGCTAACTTTA
1 TTATTTTTAT-TTTAAAGCTAA-TTTA
8628074 TAAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 9 0.41
27 9 0.41
28 4 0.18
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (26 bp):
TTATTTTTATTTTAAAGCTAATTTAA
Found at i:8628289 original size:28 final size:28
Alignment explanation
Indices: 8628229--8628295 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
8628219 TGGCTTTCTG
* *
8628229 TAAACCCTTAAATCTTAAACATTAAACCC
1 TAAACCC-TAAATCTTAAACATTAAAACA
*
8628258 TAAACCCTAAATTTTAAATCA-TAAAACA
1 TAAACCCTAAATCTTAAA-CATTAAAACA
*
8628286 TAAACACTAA
1 TAAACCCTAA
8628296 TCCATAAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 24 0.73
29 9 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (28 bp):
TAAACCCTAAATCTTAAACATTAAAACA
Found at i:8630271 original size:14 final size:15
Alignment explanation
Indices: 8630252--8630281 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8630242 TGTGTTTATA
8630252 TAAATACAT-AATTC
1 TAAATACATAAATTC
8630266 TAAATACATAAATTC
1 TAAATACATAAATTC
8630281 T
1 T
8630282 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:8632798 original size:23 final size:23
Alignment explanation
Indices: 8632768--8632817 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
8632758 AACATTAATC
8632768 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
8632791 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
8632814 AAAT
1 AAAT
8632818 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:8633363 original size:241 final size:241
Alignment explanation
Indices: 8632940--8633373 Score: 859
Period size: 241 Copynumber: 1.8 Consensus size: 241
8632930 ATGAATTAAT
8632940 TTTATTACCATGTAGATTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGATTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
8633005 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
8633070 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
8633135 AAGAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAGAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
*
8633181 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGATTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
8633246 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
8633311 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
8633374 GACTATATTC
Statistics
Matches: 192, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
241 192 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (241 bp):
TTTATTACCATGTAGATTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAGAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:8633517 original size:9 final size:9
Alignment explanation
Indices: 8633494--8633621 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
8633484 ATTGATCATT
*
8633494 ACTTAAATA
1 ACTTACATA
*
8633503 AATTACATA
1 ACTTACATA
8633512 ACTTACATA
1 ACTTACATA
* *
8633521 ACTCATATA
1 ACTTACATA
8633530 ACTTACATA
1 ACTTACATA
*
8633539 ATTTACATAA
1 ACTTACAT-A
8633549 CCACTTACATA
1 --ACTTACATA
*
8633560 ACTCACATA
1 ACTTACATA
8633569 ACTTACATA
1 ACTTACATA
*
8633578 ATTTACATA
1 ACTTACATA
*
8633587 ACTCACATA
1 ACTTACATA
*
8633596 ACGTACATAACA
1 ACTTACAT---A
8633608 ACTTACATA
1 ACTTACATA
8633617 ACTTA
1 ACTTA
8633622 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
10 1 0.01
11 1 0.01
12 15 0.16
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:8633564 original size:39 final size:39
Alignment explanation
Indices: 8633512--8633588 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
8633502 AAATTACATA
*
8633512 ACTTACATAACTCATATAACTTACATAATTTACATAACC
1 ACTTACATAACTCACATAACTTACATAATTTACATAACC
8633551 ACTTACATAACTCACATAACTTACATAATTTACATAAC
1 ACTTACATAACTCACATAACTTACATAATTTACATAAC
8633589 TCACATAACG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.32
Consensus pattern (39 bp):
ACTTACATAACTCACATAACTTACATAATTTACATAACC
Found at i:8633588 original size:57 final size:57
Alignment explanation
Indices: 8633507--8633619 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
8633497 TAAATAAATT
* * ** *
8633507 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACCACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
8633564 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
8633620 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:8639664 original size:43 final size:43
Alignment explanation
Indices: 8639639--8639887 Score: 374
Period size: 43 Copynumber: 5.8 Consensus size: 43
8639629 GTGGGAAAAG
8639639 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * * *
8639682 TGCAGCTAAAAGACTTGACCTTTAGCGGCGCTTTACCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
8639725 CGCCGCTAAAAACCTTGACCTTTAGCGGCGC-TTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* * * *
8639767 CGCCGCTAAAAACCTTGACCTTTTGCGGTGCTTTTCCCACAAC
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
8639810 CGCCGTTAAAAGACTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
8639853 CGTCGCGAAAAGCCTTGACCTTTAGCGGCGCTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
8639888 TTCCAATAAA
Statistics
Matches: 183, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 39 0.21
43 144 0.79
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:8639869 original size:128 final size:128
Alignment explanation
Indices: 8639639--8639886 Score: 397
Period size: 128 Copynumber: 1.9 Consensus size: 128
8639629 GTGGGAAAAG
* *
8639639 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAATGCAGCTAAAAGACTTGACCTT
1 CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
*
8639704 TAGCGGCGCTTTACCCACAAACGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTCCCACAAA
66 TAGCGGCGCTTTACCCACAAACGCCGCGAAAAACCTTGACCTTTAGCGGCGCTTTCCCACAAA
* * * * *
8639767 CGCCGCTAAAAACCTTGACCTTTTGCGGTGCTTTTCCCACAACCGCCGTTAAAAGACTTGACCTT
1 CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
* * *
8639832 TAGCGGCGCTTTTCCCACAAACGTCGCGAAAAGCCTTGACCTTTAGCGGCGCTTT
66 TAGCGGCGCTTTACCCACAAACGCCGCGAAAAACCTTGACCTTTAGCGGCGCTTT
8639887 TTTCCAATAA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
128 109 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (128 bp):
CGCCGCTAAAAACCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCAGCTAAAAGACTTGACCTT
TAGCGGCGCTTTACCCACAAACGCCGCGAAAAACCTTGACCTTTAGCGGCGCTTTCCCACAAA
Found at i:8641198 original size:41 final size:41
Alignment explanation
Indices: 8641151--8641270 Score: 222
Period size: 41 Copynumber: 2.9 Consensus size: 41
8641141 TAAAAATAGA
8641151 GCATTAGCGGCGCTTTAGGGAAAACGCCGCTAAAAACCAGG
1 GCATTAGCGGCGCTTTAGGGAAAACGCCGCTAAAAACCAGG
*
8641192 GCATTAGCGGCGCTTTAGGGAAAACGCTGCTAAAAACCAGG
1 GCATTAGCGGCGCTTTAGGGAAAACGCCGCTAAAAACCAGG
*
8641233 GCATTAGCGACGCTTTAGGGAAAACGCCGCTAAAAACC
1 GCATTAGCGGCGCTTTAGGGAAAACGCCGCTAAAAACC
8641271 CCACAACCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.16
Consensus pattern (41 bp):
GCATTAGCGGCGCTTTAGGGAAAACGCCGCTAAAAACCAGG
Found at i:8641450 original size:14 final size:14
Alignment explanation
Indices: 8641428--8641469 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
8641418 TTAATTATCA
* *
8641428 TTATAGTTTAAGGT
1 TTATGGTTTAAGAT
8641442 TTATGGTTTAAGAT
1 TTATGGTTTAAGAT
*
8641456 ATATGGTTTAAGAT
1 TTATGGTTTAAGAT
8641470 GGTTTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (14 bp):
TTATGGTTTAAGAT
Found at i:8642340 original size:15 final size:15
Alignment explanation
Indices: 8642320--8642351 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8642310 TTTAATTTAG
*
8642320 AAGATAAATGTATAT
1 AAGATAAATATATAT
8642335 AAGATAAATATATAT
1 AAGATAAATATATAT
8642350 AA
1 AA
8642352 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:8642390 original size:24 final size:24
Alignment explanation
Indices: 8642323--8642390 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
8642313 AATTTAGAAG
* *
8642323 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
* *
8642348 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAT
8642372 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
8642391 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:8645912 original size:133 final size:133
Alignment explanation
Indices: 8645674--8645925 Score: 504
Period size: 133 Copynumber: 1.9 Consensus size: 133
8645664 TGGTGATTCC
8645674 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
8645739 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
8645804 TAT
131 TAT
8645807 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
8645872 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
8645926 TGCTGAATTC
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 119 1.00
ACGTcount: A:0.19, C:0.10, G:0.19, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:8648023 original size:21 final size:21
Alignment explanation
Indices: 8647994--8648033 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8647984 GTTTTTATAT
*
8647994 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
8648015 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
8648034 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:8648481 original size:21 final size:21
Alignment explanation
Indices: 8648452--8648491 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8648442 GTTTTTATAT
*
8648452 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
8648473 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
8648492 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:8648529 original size:458 final size:459
Alignment explanation
Indices: 8647615--8648846 Score: 2414
Period size: 458 Copynumber: 2.7 Consensus size: 459
8647605 TTCTCTCCAA
8647615 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
*
8647680 CGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
*
8647745 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACTTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
8647810 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
8647875 TATATTAAACATGTATGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
261 TATATTAAACATGT-TGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATT
8647940 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
325 TTTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAAC
8648005 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
390 TTAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGT
8648070 CCATT
455 CCATT
8648075 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
8648140 CGAGCTGCAAGATATAATGGATCCT-CCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
8648204 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
8648269 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
8648334 TATATTAAACATGTTGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATTT
261 TATATTAAACATGTTGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATTT
8648399 TTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAACT
326 TTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAACT
8648464 TAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTC
391 TAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTC
8648529 CATT
456 CATT
8648533 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
1 CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
8648598 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
66 CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
8648663 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
131 ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
8648728 -TTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
196 GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
8648792 TATATTAAACATGTTTGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTT
261 TATATTAAACATG-TTGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTT
8648847 TGTTATATTA
Statistics
Matches: 768, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
458 352 0.46
459 327 0.43
460 89 0.12
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (459 bp):
CCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATAT
CGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAA
ATTCAAAAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTAATTTATTTCCA
GTTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATTACTATTTTGT
TATATTAAACATGTTGATTTTAATATTTATTATTTTTAAATGTCTTTAAAATTTATAACTAATTT
TTATCAAAATAGTATTATTAATTATTATTTGAAGTATGAATAAGTTTTTATATTTTGGTTCAACT
TAAGTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTC
CATT
Found at i:8654659 original size:21 final size:21
Alignment explanation
Indices: 8654633--8654675 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8654623 TCAACTTAGA
*
8654633 GCAGAGGCAGCAGCGAGGGAG
1 GCAGAGGCAGCAGCGAAGGAG
*
8654654 GCAGAGGTAGCAGCGAAGGAG
1 GCAGAGGCAGCAGCGAAGGAG
8654675 G
1 G
8654676 TGGAGCAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.51, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGCGAAGGAG
Found at i:8655183 original size:42 final size:42
Alignment explanation
Indices: 8654977--8655249 Score: 217
Period size: 43 Copynumber: 6.4 Consensus size: 42
8654967 ACTGAGCAAA
* *
8654977 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCT
1 TTAGCGGCGTTTTTTA-AAAAGCGCCGCTAAAGGTCCTGGTCT
* * *
8655020 TTAGCGGCATTTTTTAAAAAAGCACCGCTAAAGGTCCTAGTCT
1 TTAGCGGCGTTTTTT-AAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * * * * **
8655063 TTGGCGACGCTTTTATAAAAAACGTCGCTATA-GAACT-GTACTT
1 TTAGCGGCG-TTTTTTAAAAAGCGCCGCTAAAGGTCCTGGT-C-T
* * * *
8655106 TTAGCGGCGCTTTTATAAAAAACGTCGCTATAGGTCCTGGTCT
1 TTAGCGGCG-TTTTTTAAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * *
8655149 TTGGCGGCGTTTTTTTAAGAGCGCCGCTAAAGGTCATGGTCT
1 TTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * *
8655191 TTAGCGGCGTTTTTATAAAAAAACGTCGCTAAAGATCGTGGTCT
1 TTAGCGGCGTTTTT-T-AAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
8655235 TTAGAGGCATTTTTT
1 TTAGCGGCGTTTTTT
8655250 TCTAAAAAAC
Statistics
Matches: 186, Mismatches: 36, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
41 2 0.01
42 43 0.23
43 96 0.52
44 43 0.23
45 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAGGTCCTGGTCT
Found at i:8655213 original size:86 final size:85
Alignment explanation
Indices: 8654980--8655250 Score: 269
Period size: 86 Copynumber: 3.2 Consensus size: 85
8654970 GAGCAAATTA
* * * *
8654980 GCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTTTAGCGGCATTTTT-TAAAAAAGCA
1 GCGGCGTTTTTT-TAAAAGCGCCGCTAAAGATC-TGGTCTTTAGCGGCGTTTTTATAAAAAAACG
* *
8655044 CCGCTAAAGGTCCTAGTCTTTG
64 TCGCTAAAGGTCCTGGTCTTTG
* * * * * * * *
8655066 GCGACGCTTTTATAAAAAACGTCGCTATAGAACT-GTACTTTTAGCGGCGCTTTTAT-AAAAAAC
1 GCGGCG-TTTTTTTAAAAGCGCCGCTAAAGATCTGGT-C-TTTAGCGGCGTTTTTATAAAAAAAC
*
8655129 GTCGCTATAGGTCCTGGTCTTTG
63 GTCGCTAAAGGTCCTGGTCTTTG
* *
8655152 GCGGCGTTTTTTTAAGAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTATAAAAAAACGT
1 GCGGCGTTTTTTTAAAAGCGCCGCTAAAGATC-TGGTCTTTAGCGGCGTTTTTATAAAAAAACGT
* * *
8655217 CGCTAAAGATCGTGGTCTTTA
65 CGCTAAAGGTCCTGGTCTTTG
* *
8655238 GAGGCATTTTTTT
1 GCGGCGTTTTTTT
8655251 CTAAAAAACG
Statistics
Matches: 147, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
84 2 0.01
85 36 0.24
86 101 0.69
87 8 0.05
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (85 bp):
GCGGCGTTTTTTTAAAAGCGCCGCTAAAGATCTGGTCTTTAGCGGCGTTTTTATAAAAAAACGTC
GCTAAAGGTCCTGGTCTTTG
Found at i:8655219 original size:129 final size:129
Alignment explanation
Indices: 8654977--8655221 Score: 314
Period size: 129 Copynumber: 1.9 Consensus size: 129
8654967 ACTGAGCAAA
* * * *
8654977 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCTTTAGCGGCATTTTTTAAAAAAG
1 TTAGCGGCGTTTTATATAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCATTTTTTAAAAAAG
* *
8655042 CACCGCTAAAGGTCCTAGTCTTTGGCGACGCTTTTATAAAAAACGTCGCTATAGAACTGTACTT
66 CACCGCTAAAGGTCATAGTCTTTAGCGACGCTTTTATAAAAAACGTCGCTATAGAACTGTACTT
* * * * * *
8655106 TTAGCGGCGCTTTTATA-AAAAACGTCGCTATAGGTCCTGGTCTTTGGCGGCGTTTTTT-TAAGA
1 TTAGCGGCG-TTTTATATAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCATTTTTTAAAAAA
* * * *
8655169 GCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTATAAAAAAACGTCGCTA
65 GCACCGCTAAAGGTCATAGTCTTTAGCGACGCTTTTAT-AAAAAACGTCGCTA
8655222 AAGATCGTGG
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
128 35 0.36
129 57 0.58
130 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (129 bp):
TTAGCGGCGTTTTATATAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCGGCATTTTTTAAAAAAG
CACCGCTAAAGGTCATAGTCTTTAGCGACGCTTTTATAAAAAACGTCGCTATAGAACTGTACTT
Found at i:8658747 original size:9 final size:9
Alignment explanation
Indices: 8658729--8658768 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
8658719 TTAAAAAAAT
*
8658729 ATATACATA
1 ATATATATA
8658738 ATATATATA
1 ATATATATA
*
8658747 ATACATATA
1 ATATATATA
8658756 ATATATAT-
1 ATATATATA
8658764 ATATA
1 ATATA
8658769 CGTATTAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (9 bp):
ATATATATA
Found at i:8660174 original size:10 final size:10
Alignment explanation
Indices: 8660161--8660186 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8660151 AATTATAGAG
8660161 AGAGAGAGAA
1 AGAGAGAGAA
8660171 AGAGAGAGAA
1 AGAGAGAGAA
8660181 AGAGAG
1 AGAGAG
8660187 TGAGAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (10 bp):
AGAGAGAGAA
Found at i:8660176 original size:14 final size:14
Alignment explanation
Indices: 8660157--8660195 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8660147 TTAAAATTAT
*
8660157 AGAGAGAGAGAGAA
1 AGAGAGAGAAAGAA
*
8660171 AGAGAGAGAAAGAG
1 AGAGAGAGAAAGAA
*
8660185 AGTGAGAGAAA
1 AGAGAGAGAAA
8660196 AAGAAAACCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.03
Consensus pattern (14 bp):
AGAGAGAGAAAGAA
Found at i:8668306 original size:45 final size:45
Alignment explanation
Indices: 8668257--8668405 Score: 126
Period size: 45 Copynumber: 3.3 Consensus size: 45
8668247 TTAGACGGGG
*
8668257 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAAATAGCAGATCTGACATTCGTGTGTTTACATCGA
* * * * ** * * *
8668302 AGCAGATTGAAAAT-GACAGATTTGGCATCTC-CGT-ACTAGATGGGG
1 AGCAGATCGAAAATAG-CAGATCTGACAT-TCGTGTGTTTACAT-CGA
*
8668347 AGCAGATC-AAATATAGCAAATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAA-ATAGCAGATCTGACATTCGTGTGTTTACATCGA
*
8668392 AGTAGATCGAAAAT
1 AGCAGATCGAAAAT
8668406 GACAGATTTG
Statistics
Matches: 75, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
44 10 0.13
45 55 0.73
46 10 0.13
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAAATAGCAGATCTGACATTCGTGTGTTTACATCGA
Found at i:8668381 original size:90 final size:90
Alignment explanation
Indices: 8668228--8668767 Score: 720
Period size: 90 Copynumber: 6.2 Consensus size: 90
8668218 TCACTGATAG
* **
8668228 CAGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
8668293 TTACATCGAAGCAGATTGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
* * * * * *
8668318 CAGATTTGGCATCTCCGTACTAGATGGGGAGCAGATCAAATATAGCAAATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
8668383 TTACATCGAAGTAGATCGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
*
8668408 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTC--GTG-
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* *
8668470 -----T-GAAGCAGATTGAAGATGA
66 TTACATCGAAGCAGATCGAAAATGA
* *
8668489 CAGATTTGGCGCCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
8668554 TTACATCGAAGCAGATCGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
* * *
8668579 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGTAGATTTGGCATTC--GTG-
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* *
8668641 -----T-GAAGTAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAAATGA
*** * *
8668660 CAGATTTGGCGTCTTTATATTAGACGGGGAGTAGATCGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
8668725 TTACATCGAAGCAGATCGAAAATGA
66 TTACATCGAAGCAGATCGAAAATGA
8668750 CAGATTTGGCGTCTCCGT
1 CAGATTTGGCGTCTCCGT
8668768 TCGAAGATGA
Statistics
Matches: 390, Mismatches: 42, Indels: 36
0.83 0.09 0.08
Matches are distributed among these distances:
81 140 0.36
82 2 0.01
83 6 0.02
88 6 0.02
89 2 0.01
90 234 0.60
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (90 bp):
CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
TTACATCGAAGCAGATCGAAAATGA
Found at i:8668459 original size:45 final size:45
Alignment explanation
Indices: 8668395--8668702 Score: 187
Period size: 45 Copynumber: 7.2 Consensus size: 45
8668385 ACATCGAAGT
*
8668395 AGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
1 AGATCGAAGATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
* * *
8668440 AGATCGAAGAT-AGCAGATTTGACAT-T-CGT-GT-GA-----AGC
1 AGATCGAAGATGA-CAGATTTGGCGTCTCCGTATTAGACGGGGAGC
* * *
8668476 AGATTGAAGATGACAGATTTGGCGCCTCTGTATTAGACGGGGAGC
1 AGATCGAAGATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
* * * * * * *
8668521 AGATCGAAGAT-AGCAGATCTGACAT-TCGTGTGTTTACATC--GAAGC
1 AGATCGAAGATGA-CAGATTTGGCGTCTC-CGT-ATTAGA-CGGGGAGC
*
8668566 AGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
1 AGATCGAAGATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
* * * *
8668611 AGATCGAAGAT-AGTAGATTTGGCAT-T-CGT-GT-GA-----AGT
1 AGATCGAAGATGA-CAGATTTGGCGTCTCCGTATTAGACGGGGAGC
*** *
8668647 AGATCGAAGATGACAGATTTGGCGTCTTTATATTAGACGGGGAGT
1 AGATCGAAGATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
8668692 AGATCGAAGAT
1 AGATCGAAGAT
8668703 AGTAGATCTG
Statistics
Matches: 197, Mismatches: 36, Indels: 60
0.67 0.12 0.20
Matches are distributed among these distances:
36 45 0.23
37 4 0.02
38 3 0.02
39 2 0.01
40 4 0.02
41 4 0.02
42 2 0.01
43 7 0.04
44 11 0.06
45 107 0.54
46 7 0.04
47 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (45 bp):
AGATCGAAGATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGC
Found at i:8668544 original size:81 final size:81
Alignment explanation
Indices: 8668390--8668767 Score: 450
Period size: 81 Copynumber: 4.4 Consensus size: 81
8668380 TGTTTACATC
*
8668390 GAAGTAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCA
1 GAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCA
*
8668455 GATTTGACATTCGTGT
66 GATCTGACATTCGTGT
* * * *
8668471 GAAGCAGATTGAAGATGACAGATTTGGCGCCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
1 GAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCA
8668536 GATCTGACATTCGTGTGTTTACAT
66 GATCTGACATTC--GTG------T
*
8668560 CGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGT
1 -GAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGC
* *
8668625 AGATTTGGCATTCGTGT
65 AGATCTGACATTCGTGT
* * *** * *
8668642 GAAGTAGATCGAAGATGACAGATTTGGCGTCTTTATATTAGACGGGGAGTAGATCGAAGATAGTA
1 GAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCA
8668707 GATCTGACATTCGTGTGTTTACAT
66 GATCTGACATTC--GTG------T
8668731 CGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
1 -GAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
8668768 TCGAAGATGA
Statistics
Matches: 253, Mismatches: 26, Indels: 27
0.83 0.08 0.09
Matches are distributed among these distances:
81 140 0.55
82 1 0.00
83 6 0.02
88 3 0.01
89 2 0.01
90 101 0.40
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (81 bp):
GAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCA
GATCTGACATTCGTGT
Found at i:8668561 original size:171 final size:171
Alignment explanation
Indices: 8668228--8668767 Score: 801
Period size: 171 Copynumber: 3.1 Consensus size: 171
8668218 TCACTGATAG
* ** *
8668228 CAGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTC--GTG-
* * * * * *
8668293 TTACATCGAAGCAGATTGAAAATGACAGATTTGGCATCTCCGTACTAGATGGGGAGCAGATCAAA
63 -----T-GAAGCAGATTGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * *
8668358 TATAGCAAATCTGACATTCGTGTGTTTACATCGAAGTAGATCGAAAATGA
122 GATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
8668408 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
*
8668473 AGCAGATTGAAGATGACAGATTTGGCGCCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
66 AGCAGATTGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
8668538 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
131 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
* *
8668579 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGTAGATTTGGCATTCGTGTGA
1 CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
* * * * * *
8668644 AGTAGATCGAAGATGACAGATTTGGCGTCTTTATATTAGACGGGGAGTAGATCGAAGATAGTAGA
66 AGCAGATTGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
8668709 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
131 TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
8668750 CAGATTTGGCGTCTCCGT
1 CAGATTTGGCGTCTCCGT
8668768 TCGAAGATGA
Statistics
Matches: 337, Mismatches: 23, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
171 278 0.82
172 1 0.00
178 3 0.01
180 55 0.16
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (171 bp):
CAGATTTGGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGA
AGCAGATTGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
TCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAAATGA
Found at i:8668857 original size:45 final size:45
Alignment explanation
Indices: 8668805--8669140 Score: 172
Period size: 45 Copynumber: 7.5 Consensus size: 45
8668795 ATTAGACAGA
8668805 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* * * * * * *
8668850 GAGCAGATCGAAGAT-GACAGATTTGGCGTCTC-TATATTAGACA-GG
1 GAGCAGATCGAAGATAGA-AGATCTGACAT-TCGTGTGTT-TACATCG
* * *
8668895 GAGTAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCG
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* * * * * * * *
8668940 AAGCAGATCGAAAAT-GACAGATTTGGCGTCTC-TGTATTAGACA-GG
1 GAGCAGATCGAAGATAGA-AGATCTGACAT-TCGTGTGTT-TACATCG
* * * * *
8668985 GGGCAGATTGAAGATAGCAG-TCTGATATTCGTGTGTTTACATCA
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* * * * * * * *
8669029 AAGCAGATCGAAAAT-GACAGATTTGGCGTCTC-TAT-ATTAGA-CGGG
1 GAGCAGATCGAAGATAGA-AGATCTGACAT-TCGTGTGTTTACATC--G
* * * *
8669074 GAGCAGATCGAAGATAGCAGAACTGACATTCGTATGTTTACATCA
1 GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
* *
8669119 AAGCAGATCGAAGATAGCAGAT
1 GAGCAGATCGAAGATAGAAGAT
8669141 TTGGCGCTCT
Statistics
Matches: 204, Mismatches: 66, Indels: 42
0.65 0.21 0.13
Matches are distributed among these distances:
43 7 0.03
44 36 0.18
45 141 0.69
46 19 0.09
47 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (45 bp):
GAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCG
Found at i:8668871 original size:117 final size:118
Alignment explanation
Indices: 8668650--8668881 Score: 367
Period size: 117 Copynumber: 2.0 Consensus size: 118
8668640 GTGAAGTAGA
** * * * *
8668650 TCGAAGATGACAGATTTGGCGTCTTTATATTAGACGGGGAGTAGATCGAAGATAGTAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCCCTATATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
8668715 ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
66 ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
* *
8668768 TCGAAGATGATAGA-TTGGCGTCCCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCCCTATATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
* *
8668832 ATTCGTGTGTTTACATCGGAGCAGATCGAAGATGACAGATTTGGCGTCTC
66 ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTC
8668882 TATATTAGAC
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
117 91 0.88
118 13 0.12
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (118 bp):
TCGAAGATGACAGATTTGGCGTCCCTATATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
ATTCGTGTGTTTACATCGAAGCAGATCGAAAATGACAGATTTGGCGTCTCCGT
Found at i:8668890 original size:90 final size:90
Alignment explanation
Indices: 8668768--8669171 Score: 575
Period size: 90 Copynumber: 4.5 Consensus size: 90
8668758 GCGTCTCCGT
* * * *
8668768 TCGAAGATGATAGA-TTGGCGTCCCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
**
8668832 ATTCGTGTGTTTACATCGGAGCAGA
66 ATTCGTGTGTTTACATCAAAGCAGA
* * *
8668857 TCGAAGATGACAGATTTGGCGTCTCTATATTAGACAGGGAGTAGATCGAAGATAGCAGATCTAAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
*
8668922 ATTCGTGTGTTTACATCGAAGCAGA
66 ATTCGTGTGTTTACATCAAAGCAGA
* * * *
8668947 TCGAAAATGACAGATTTGGCGTCTCTGTATTAGACAGGGGGCAGATTGAAGATAGCAG-TCTGAT
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
8669011 ATTCGTGTGTTTACATCAAAGCAGA
66 ATTCGTGTGTTTACATCAAAGCAGA
* * * *
8669036 TCGAAAATGACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAGCAGAACTGAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
*
8669101 ATTCGTATGTTTACATCAAAGCAGA
66 ATTCGTGTGTTTACATCAAAGCAGA
*
8669126 TCGAAGAT-AGCAGATTTGGCG-CTCTGTATTTGAC-GGGAAGCAGATC
1 TCGAAGATGA-CAGATTTGGCGTCTCTGTATTAGACAGGG-AGCAGATC
8669172 AAGGATATTA
Statistics
Matches: 285, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
88 3 0.01
89 115 0.40
90 167 0.59
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (90 bp):
TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGAC
ATTCGTGTGTTTACATCAAAGCAGA
Found at i:8669084 original size:179 final size:180
Alignment explanation
Indices: 8668768--8669155 Score: 586
Period size: 179 Copynumber: 2.2 Consensus size: 180
8668758 GCGTCTCCGT
* *
8668768 TCGAAGATGATAGA-TTGGCGTCCCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
** *
8668832 ATTCGTGTGTTTACATCGGAGCAGATCGAAGATGACAGATTTGGCGTCTCTATATTAGACAGGGA
66 ATTCGTGTGTTTACATCAAAGCAGATCGAAAATGACAGATTTGGCGTCTCTATATTAGACAGGGA
* * * *
8668897 GTAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGA
131 GCAGATCGAAGATAGCAGAACTAACATTCGTATGTTTACATCAAAGCAGA
* * * * * *
8668947 TCGAAAATGACAGATTTGGCGTCTCTGTATTAGACAGGGGGCAGATTGAAGATAGCAG-TCTGAT
1 TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
*
8669011 ATTCGTGTGTTTACATCAAAGCAGATCGAAAATGACAGATTTGGCGTCTCTATATTAGACGGGGA
66 ATTCGTGTGTTTACATCAAAGCAGATCGAAAATGACAGATTTGGCGTCTCTATATTAGACAGGGA
*
8669076 GCAGATCGAAGATAGCAGAACTGACATTCGTATGTTTACATCAAAGCAGA
131 GCAGATCGAAGATAGCAGAACTAACATTCGTATGTTTACATCAAAGCAGA
8669126 TCGAAGAT-AGCAGATTTGGCG-CTCTGTATT
1 TCGAAGATGA-CAGATTTGGCGTCTCTGTATT
8669156 TGACGGGAAG
Statistics
Matches: 189, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
178 10 0.05
179 141 0.75
180 38 0.20
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (180 bp):
TCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAAGATAGAAGATCTGAC
ATTCGTGTGTTTACATCAAAGCAGATCGAAAATGACAGATTTGGCGTCTCTATATTAGACAGGGA
GCAGATCGAAGATAGCAGAACTAACATTCGTATGTTTACATCAAAGCAGA
Found at i:8670677 original size:19 final size:19
Alignment explanation
Indices: 8670653--8670727 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
8670643 TTGTGTATTG
8670653 TTTATTATATTATTTACAT
1 TTTATTATATTATTTACAT
**
8670672 TTTATTATA-TATTTTGAT
1 TTTATTATATTATTTACAT
* *
8670690 TTATACATTTTATTATATATCAT
1 TT-T--ATTATATTATTTA-CAT
8670713 TTTATTATATATATT
1 TTTATTATAT-TATT
8670728 ATTTTTATTC
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
18 9 0.21
19 10 0.24
20 6 0.14
21 8 0.19
22 5 0.12
23 4 0.10
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTATTATATTATTTACAT
Found at i:8670677 original size:26 final size:26
Alignment explanation
Indices: 8670655--8670768 Score: 78
Period size: 26 Copynumber: 4.5 Consensus size: 26
8670645 GTGTATTGTT
8670655 TATTATATTATTTACATTTTATTATA
1 TATTATATTATTTACATTTTATTATA
* *
8670681 TATTTTGATT-TATACATTTTATTATA
1 TATTAT-ATTATTTACATTTTATTATA
* * * * *
8670707 TATCATTTTATTATATATATTATT-TT
1 TATTATATTATT-TACATTTTATTATA
* * *
8670733 TATTCTATTA--TACATTATATAAT-
1 TATTATATTATTTACATTTTATTATA
8670756 TATT-TATTATTTA
1 TATTATATTATTTA
8670769 TTATTATGTA
Statistics
Matches: 66, Mismatches: 16, Indels: 14
0.69 0.17 0.15
Matches are distributed among these distances:
22 5 0.08
23 11 0.17
24 3 0.05
25 2 0.03
26 33 0.50
27 12 0.18
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (26 bp):
TATTATATTATTTACATTTTATTATA
Found at i:8670679 original size:14 final size:14
Alignment explanation
Indices: 8670660--8670723 Score: 80
Period size: 14 Copynumber: 4.6 Consensus size: 14
8670650 TTGTTTATTA
*
8670660 TATTATTTACATTT
1 TATTATATACATTT
8670674 TATTATAT--ATTT
1 TATTATATACATTT
8670686 TGATT-TATACATTT
1 T-ATTATATACATTT
8670700 TATTATATATCATTT
1 TATTATATA-CATTT
8670715 TATTATATA
1 TATTATATA
8670724 TATTATTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
12 8 0.18
13 6 0.14
14 16 0.36
15 14 0.32
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (14 bp):
TATTATATACATTT
Found at i:8670685 original size:12 final size:12
Alignment explanation
Indices: 8670615--8670786 Score: 81
Period size: 12 Copynumber: 14.2 Consensus size: 12
8670605 GTAAAAATGG
8670615 TTATTATATATT
1 TTATTATATATT
*
8670627 TTATT-TTTATTT
1 TTATTATATA-TT
* *
8670639 TTATTTGTGTATT
1 TTA-TTATATATT
* *
8670652 GT-TTAT-TATA
1 TTATTATATATT
*
8670662 TTATT-TACATT
1 TTATTATATATT
8670673 TTATTATATATT
1 TTATTATATATT
*
8670685 TTGATTTATACATT
1 TT-A-TTATATATT
8670699 TTATTATATATCATT
1 TTA-T-TATAT-ATT
*
8670714 TTATTATATATA
1 TTATTATATATT
*
8670726 TTATT-TTTATT
1 TTATTATATATT
* *
8670737 CTATTATACATT
1 TTATTATATATT
* *
8670749 ATATAAT-TA-T
1 TTATTATATATT
*
8670759 TTATTATTTATT
1 TTATTATATATT
8670771 ATTATGTATA-ATT
1 -TTAT-TATATATT
8670784 TTA
1 TTA
8670787 AAAATTTGTA
Statistics
Matches: 122, Mismatches: 23, Indels: 30
0.70 0.13 0.17
Matches are distributed among these distances:
10 11 0.09
11 26 0.21
12 37 0.30
13 21 0.17
14 21 0.17
15 6 0.05
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (12 bp):
TTATTATATATT
Found at i:8670726 original size:17 final size:15
Alignment explanation
Indices: 8670660--8670724 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 15
8670650 TTGTTTATTA
*
8670660 TATTATTTA-CATTT
1 TATTATATATCATTT
8670674 TATTATATAT--TTT
1 TATTATATATCATTT
*
8670687 GATT-TATA-CATTT
1 TATTATATATCATTT
8670700 TATTATATATCATTT
1 TATTATATATCATTT
8670715 TATTATATAT
1 TATTATATAT
8670725 ATTATTTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
12 4 0.09
13 12 0.28
14 12 0.28
15 15 0.35
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTATATATCATTT
Found at i:8670735 original size:15 final size:15
Alignment explanation
Indices: 8670655--8670780 Score: 76
Period size: 14 Copynumber: 8.9 Consensus size: 15
8670645 GTGTATTGTT
*
8670655 TATTA-TATTATTTA
1 TATTATTATTATATA
*
8670669 CATT-TTATTATATA
1 TATTATTATTATATA
*
8670683 T-TT-TGATT-TATA
1 TATTATTATTATATA
*
8670695 CATT-TTATTATATA
1 TATTATTATTATATA
8670709 TCATT-TTATTATATA
1 T-ATTATTATTATATA
* *
8670724 TATTATTTTTAT-TC
1 TATTATTATTATATA
*
8670738 TATTATACATTATATA
1 TATTAT-TATTATATA
8670754 -ATTATTTATTAT-T-
1 TATTA-TTATTATATA
8670767 TATTATTATGTATA
1 TATTATTAT-TATA
8670781 ATTTTAAAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.05
13 16 0.18
14 33 0.38
15 33 0.38
16 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTATTATATA
Found at i:8670752 original size:30 final size:29
Alignment explanation
Indices: 8670716--8670772 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 29
8670706 ATATCATTTT
8670716 ATTATATATATTATTT-TTATTCTATTATAC
1 ATTATATA-ATTATTTATTATT-TATTATAC
8670746 ATTATATAATTATTTATTATTTATTAT
1 ATTATATAATTATTTATTATTTATTAT
8670773 TATGTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTATATAATTATTTATTATTTATTATAC
Found at i:8670842 original size:22 final size:22
Alignment explanation
Indices: 8670784--8670846 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
8670774 ATGTATAATT
* *
8670784 TTAAAAATTT-GTAAATTATTA
1 TTAAATATTTAGTATATTATTA
* *
8670805 TTAAATA-ATACATATATTATTA
1 TTAAATATTTA-GTATATTATTA
8670827 TTAAATATTTAGTATATTAT
1 TTAAATATTTAGTATATTAT
8670847 GTAATATTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
20 1 0.03
21 6 0.18
22 24 0.73
23 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (22 bp):
TTAAATATTTAGTATATTATTA
Found at i:8674445 original size:28 final size:27
Alignment explanation
Indices: 8674410--8674474 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
8674400 CATCAGAATA
8674410 CAGTCAAATACAGG-CTGGGCCTGAGCC
1 CAGTCAAATAC-GGTCTGGGCCTGAGCC
*
8674437 CAGTACAAACT-CGGTCTGGGCCTTAGCC
1 CAGT-CAAA-TACGGTCTGGGCCTGAGCC
*
8674465 CAATCAAATA
1 CAGTCAAATA
8674475 TAGTTTTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
26 1 0.03
27 10 0.31
28 20 0.62
29 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGTCAAATACGGTCTGGGCCTGAGCC
Found at i:8685415 original size:26 final size:26
Alignment explanation
Indices: 8685379--8685444 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
8685369 ACATCAATGT
8685379 TCACACGAGCTGTGAAATGAGCCTGC
1 TCACACGAGCTGTGAAATGAGCCTGC
*
8685405 TCACACGAGCTGTGAAATGGGCCTGC
1 TCACACGAGCTGTGAAATGAGCCTGC
*
8685431 TCACATGAGCTGTG
1 TCACACGAGCTGTG
8685445 GAGAACTCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (26 bp):
TCACACGAGCTGTGAAATGAGCCTGC
Found at i:8686681 original size:19 final size:20
Alignment explanation
Indices: 8686642--8686682 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8686632 TAAAATAATT
*
8686642 AATATGCAAAATGATTTTAA
1 AATATACAAAATGATTTTAA
8686662 AATATACAAAATGA-TTTAA
1 AATATACAAAATGATTTTAA
8686681 AA
1 AA
8686683 CAATTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATACAAAATGATTTTAA
Found at i:8688474 original size:31 final size:31
Alignment explanation
Indices: 8688436--8688497 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8688426 AAATAATTGA
8688436 ACTAATCTGAAGCTTTACAGCATGTTTGGTT
1 ACTAATCTGAAGCTTTACAGCATGTTTGGTT
8688467 ACTAATCTGAAGCTTTACAGCATGTTTGGTT
1 ACTAATCTGAAGCTTTACAGCATGTTTGGTT
8688498 GGCTGTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (31 bp):
ACTAATCTGAAGCTTTACAGCATGTTTGGTT
Found at i:8688538 original size:16 final size:16
Alignment explanation
Indices: 8688499--8688554 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
8688489 TGTTTGGTTG
*
8688499 GCTGTAATAGAATAG-
1 GCTGTAATGGAATAGA
* *
8688514 GACTATAATTGAATAGA
1 G-CTGTAATGGAATAGA
*
8688531 GTTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
8688547 GCTGTAAT
1 GCTGTAAT
8688555 AAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 1 0.03
16 31 0.94
17 1 0.03
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:8688821 original size:17 final size:17
Alignment explanation
Indices: 8688799--8688831 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8688789 AATTATTATT
8688799 AAATATAATTAAATAAA
1 AAATATAATTAAATAAA
*
8688816 AAATATAATTTAATAA
1 AAATATAATTAAATAA
8688832 CATTCATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATAATTAAATAAA
Found at i:8689453 original size:40 final size:40
Alignment explanation
Indices: 8689391--8689499 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
8689381 CTTAAGTATA
*
8689391 TCTGTTAATACATACTTTATCCGGTTAAATTATACAGTTT
1 TCTGTTAATACATACTTCATCCGGTTAAATTATACAGTTT
* *
8689431 TTTGTTAATACATACTTCATCCGGATAAATTATACAGTTT
1 TCTGTTAATACATACTTCATCCGGTTAAATTATACAGTTT
*
8689471 TCTATTAATACATACTTCATCCGGATTAA
1 TCTGTTAATACATACTTCATCCGG-TTAA
8689500 TACATACTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 59 0.95
41 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (40 bp):
TCTGTTAATACATACTTCATCCGGTTAAATTATACAGTTT
Found at i:8689498 original size:21 final size:21
Alignment explanation
Indices: 8689474--8689517 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8689464 ACAGTTTTCT
8689474 ATTAATACATACTTCATCCGG
1 ATTAATACATACTTCATCCGG
8689495 ATTAATACATACTTCATCCGG
1 ATTAATACATACTTCATCCGG
8689516 AT
1 AT
8689518 AAATTATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (21 bp):
ATTAATACATACTTCATCCGG
Found at i:8689510 original size:61 final size:61
Alignment explanation
Indices: 8689435--8689552 Score: 227
Period size: 61 Copynumber: 1.9 Consensus size: 61
8689425 CAGTTTTTTG
8689435 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATCCGGA
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATCCGGA
*
8689496 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTGTTAATACATACTTCATC
1 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATC
8689553 AGATTTTCTG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (61 bp):
TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTATTAATACATACTTCATCCGGA
Found at i:8691467 original size:15 final size:16
Alignment explanation
Indices: 8691442--8691471 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8691432 TTCAAGTTAA
8691442 GATGATGAAGGAAGAT
1 GATGATGAAGGAAGAT
8691458 GATG-TGAAGGAAGA
1 GATGATGAAGGAAGA
8691472 AGAAGTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (16 bp):
GATGATGAAGGAAGAT
Found at i:8694430 original size:25 final size:24
Alignment explanation
Indices: 8694400--8694619 Score: 110
Period size: 25 Copynumber: 8.8 Consensus size: 24
8694390 TATTTTAAAC
*
8694400 TATTATTCATTTTAAATTTTATATA
1 TATTATTTATTTTAAATTTT-TATA
* *
8694425 TATTATTTATTTTAAACTATTATACA
1 TATTATTTATTTTAAA-T-TTTTATA
* *
8694451 TATTATTTATTTTGAAGTTTTTTTA
1 TATTATTTATTTT-AAATTTTTATA
8694476 TATATACCTTTATTTTAAACTATTTTATA
1 TAT-TA--TTTATTTTAAA-T-TTTTATA
*
8694505 TA-TATATT-TTTTAAATTTCTTACA
1 TATTAT-TTATTTTAAATTT-TTATA
* * * *
8694529 TGTCATTTA-GTTATACTGTTTTATA
1 TATTATTTATTTTA-AAT-TTTTATA
* ** *
8694554 TGTTAACTATTTTAAATTCTT-T-
1 TATTATTTATTTTAAATTTTTATA
* *
8694576 TATTATTTATTGTAAACCTTTTAT-
1 TATTATTTATTTTAAA-TTTTTATA
*
8694600 TATCATTTATTTTAAGATTT
1 TATTATTTATTTTAA-ATTT
8694620 CCTACATTAA
Statistics
Matches: 147, Mismatches: 30, Indels: 37
0.69 0.14 0.17
Matches are distributed among these distances:
22 12 0.08
23 6 0.04
24 30 0.20
25 47 0.32
26 27 0.18
27 8 0.05
28 9 0.06
29 8 0.05
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.59
Consensus pattern (24 bp):
TATTATTTATTTTAAATTTTTATA
Found at i:8694454 original size:26 final size:25
Alignment explanation
Indices: 8694400--8694463 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 25
8694390 TATTTTAAAC
* * *
8694400 TATTATTCATTTTAAATTTTATATA
1 TATTATTTATTTTAAATATTATACA
8694425 TATTATTTATTTTAAACTATTATACA
1 TATTATTTATTTTAAA-TATTATACA
8694451 TATTATTTATTTT
1 TATTATTTATTTT
8694464 GAAGTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 15 0.43
26 20 0.57
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (25 bp):
TATTATTTATTTTAAATATTATACA
Found at i:8694455 original size:51 final size:51
Alignment explanation
Indices: 8694400--8694522 Score: 135
Period size: 54 Copynumber: 2.4 Consensus size: 51
8694390 TATTTTAAAC
8694400 TATTATTCATTTTAAA-TTTTATATATATTA-TTTATTTTAAACTATTATACA
1 TATTATT-ATTTTAAATTTTTATATATA-TACTTTATTTTAAACTATTATACA
* * * *
8694451 TATTATTTATTTTGAAGTTTTTTTATATATACCTTTATTTTAAACTATTTTATA
1 TATTA-TTATTTT-AAATTTTTATATATATA-CTTTATTTTAAACTATTATACA
8694505 TATATATT-TTTTAAATTT
1 TAT-TATTATTTTAAATTT
8694523 CTTACATGTC
Statistics
Matches: 61, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
51 10 0.16
52 11 0.18
53 14 0.23
54 24 0.39
55 2 0.03
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (51 bp):
TATTATTATTTTAAATTTTTATATATATACTTTATTTTAAACTATTATACA
Found at i:8694501 original size:27 final size:25
Alignment explanation
Indices: 8694403--8694519 Score: 96
Period size: 27 Copynumber: 4.5 Consensus size: 25
8694393 TTTAAACTAT
*
8694403 TATTCATTTTAAA-T-TTTATATATA
1 TATTTATTTTAAACTATTT-TATATA
* *
8694427 TTATTTATTTTAAACTATTATACATA
1 -TATTTATTTTAAACTATTTTATATA
** *
8694453 TTATTTATTTTGAAGTTTTTTTATATA
1 -TATTTATTTT-AAACTATTTTATATA
8694480 TACCTTTATTTTAAACTATTTTATATA
1 TA--TTTATTTTAAACTATTTTATATA
8694507 TATATT-TTTTAAA
1 TAT-TTATTTTAAA
8694520 TTTCTTACAT
Statistics
Matches: 75, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
25 20 0.27
26 21 0.28
27 26 0.35
28 8 0.11
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (25 bp):
TATTTATTTTAAACTATTTTATATA
Found at i:8694890 original size:22 final size:21
Alignment explanation
Indices: 8694865--8694906 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8694855 TATATGTATT
8694865 ATTTATTTAAAATTGTCTTATG
1 ATTTATTTAAAATTGT-TTATG
* *
8694887 ATTTGTTTTAAATTGTTTAT
1 ATTTATTTAAAATTGTTTAT
8694907 ATTATTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (21 bp):
ATTTATTTAAAATTGTTTATG
Found at i:8700167 original size:9 final size:9
Alignment explanation
Indices: 8700155--8700234 Score: 88
Period size: 9 Copynumber: 8.6 Consensus size: 9
8700145 AATAAATAAG
8700155 AAGAAGAAA
1 AAGAAGAAA
*
8700164 AAGAAGAAG
1 AAGAAGAAA
*
8700173 AAGAAGAAG
1 AAGAAGAAA
*
8700182 AAGAAGAAG
1 AAGAAGAAA
*
8700191 AAGAAGAAG
1 AAGAAGAAA
*
8700200 AAGAAAAAGA
1 AAGAAGAA-A
8700210 GGAAGAAGAAA
1 --AAGAAGAAA
8700221 AAGAAGAAA
1 AAGAAGAAA
8700230 AAGAA
1 AAGAA
8700235 AAAGAAAAGG
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
9 56 0.88
11 1 0.02
12 7 0.11
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (9 bp):
AAGAAGAAA
Found at i:8700169 original size:12 final size:12
Alignment explanation
Indices: 8700152--8700255 Score: 104
Period size: 12 Copynumber: 8.8 Consensus size: 12
8700142 ATAAATAAAT
* *
8700152 AAGAAGAAGAAA
1 AAGAAAAAGAAG
*
8700164 AAGAAGAAGAAG
1 AAGAAAAAGAAG
*
8700176 AAGAAGAAGAAG
1 AAGAAAAAGAAG
*
8700188 AAGAAGAAGAAG
1 AAGAAAAAGAAG
*
8700200 AAGAAAAAGAGG
1 AAGAAAAAGAAG
8700212 AAGAAGAAA-AAG
1 AAGAA-AAAGAAG
*
8700224 AAGAAAAAGAAA
1 AAGAAAAAGAAG
*
8700236 AAGAAAAGGAA-
1 AAGAAAAAGAAG
*
8700247 AATAAAAAG
1 AAGAAAAAG
8700256 GAGAGGCCAA
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
11 10 0.12
12 69 0.84
13 3 0.04
ACGTcount: A:0.72, C:0.00, G:0.27, T:0.01
Consensus pattern (12 bp):
AAGAAAAAGAAG
Found at i:8700172 original size:15 final size:15
Alignment explanation
Indices: 8700152--8700240 Score: 130
Period size: 15 Copynumber: 6.1 Consensus size: 15
8700142 ATAAATAAAT
8700152 AAGAAGAAGAAAAAG
1 AAGAAGAAGAAAAAG
8700167 AAGAAGAAG---AAG
1 AAGAAGAAGAAAAAG
*
8700179 AAGAAGAAGAAGAAG
1 AAGAAGAAGAAAAAG
8700194 AAGAAGAAGAAAAAG
1 AAGAAGAAGAAAAAG
*
8700209 AGGAAGAAGAAAAAG
1 AAGAAGAAGAAAAAG
*
8700224 AAGAAAAAGAAAAAG
1 AAGAAGAAGAAAAAG
8700239 AA
1 AA
8700241 AAGGAAAATA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
12 12 0.18
15 55 0.82
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (15 bp):
AAGAAGAAGAAAAAG
Found at i:8700242 original size:6 final size:6
Alignment explanation
Indices: 8700152--8700240 Score: 124
Period size: 6 Copynumber: 14.8 Consensus size: 6
8700142 ATAAATAAAT
*
8700152 AAGAAG AAGAAA AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG
* * * * *
8700200 AAGAAA AAGAGG AAGAAG AAAAAG AAGAAA AAGAAA AAGAA
1 AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAAG AAGAA
8700241 AAGGAAAATA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (6 bp):
AAGAAG
Found at i:8701159 original size:46 final size:46
Alignment explanation
Indices: 8701085--8701204 Score: 197
Period size: 46 Copynumber: 2.6 Consensus size: 46
8701075 TAATAGATCA
*
8701085 ATGATACAAATCCTATACCCGTGAGTTGTAGTGGGCTGGATTGAAG
1 ATGATACAAATCCTATACCCGTGAGTTGTAGTAGGCTGGATTGAAG
* *
8701131 ATGATACAAATCCTATACCCTTGGGTTGTAGTAGGCTGGATTGAAG
1 ATGATACAAATCCTATACCCGTGAGTTGTAGTAGGCTGGATTGAAG
8701177 ATGATACAAATCCTATACCTC-TGAGTTG
1 ATGATACAAATCCTATACC-CGTGAGTTG
8701205 CAGTGAGATG
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
46 68 0.99
47 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (46 bp):
ATGATACAAATCCTATACCCGTGAGTTGTAGTAGGCTGGATTGAAG
Found at i:8701742 original size:94 final size:94
Alignment explanation
Indices: 8701227--8701725 Score: 737
Period size: 94 Copynumber: 5.3 Consensus size: 94
8701217 TGGAAGAAAT
* * * * *
8701227 CACAAATTTTATCTCCCTGAAGTTGCAGTGGAGCATATCAAAGTTACCATAGCGAATCTTATCTC
1 CACAAATTTTATCTCCCTAAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
8701292 CCTGAAGTTGCAGTGGAGCAGATTGAAGC
66 CCTGAAGTTGCAGTGGAGCAGATTGAAGC
* *
8701321 CACAAATTTTATCTCCCTGAAGTTGCAGTAGAGCATATCGAAGTTACCATGGCGAATCTTATCTC
1 CACAAATTTTATCTCCCTAAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
*
8701386 CCTGAAGTTGTAGTGGAGCAGATTGAAGC
66 CCTGAAGTTGCAGTGGAGCAGATTGAAGC
*
8701415 CACAAATTTTATCTCCCTGAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
1 CACAAATTTTATCTCCCTAAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
**
8701480 TTTGAAGTTGCAGTGGAGCAGATTGAAGC
66 CCTGAAGTTGCAGTGGAGCAGATTGAAGC
* ** * * * *
8701509 CATAAATTTTATCTCATTAAAGTTGCAATGGAGCATATTGCAGTTATCATGGCGAATCTTATCTC
1 CACAAATTTTATCTCCCTAAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
* *
8701574 CTTGAAGTTGTAGTGGAGCAGATTGAAGC
66 CCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * *
8701603 CACAAATTTTATCTCCCTAAAGTTACAGTAGAGCATATCGAAGTTATCATGGCAAATCCTATCTC
1 CACAAATTTTATCTCCCTAAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
* *
8701668 CCTGAAGTTACAGTGGAGCAGATTAAAGC
66 CCTGAAGTTGCAGTGGAGCAGATTGAAGC
* ** *
8701697 CACGAACCTTATCTCCTTAAAGTTGCAGT
1 CACAAATTTTATCTCCCTAAAGTTGCAGT
8701726 GGAATAGGTT
Statistics
Matches: 368, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 368 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (94 bp):
CACAAATTTTATCTCCCTAAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTC
CCTGAAGTTGCAGTGGAGCAGATTGAAGC
Found at i:8701742 original size:282 final size:276
Alignment explanation
Indices: 8701230--8701783 Score: 752
Period size: 282 Copynumber: 2.0 Consensus size: 276
8701220 AAGAAATCAC
* * *
8701230 AAATTTTATCTCCCTGAAGTTGCAGTGGAGCATATCAAAGTTACCATAGCGAATCTTATCTCCCT
1 AAATTTTATCTCACTAAAGTTGCAATGGAGCATATCAAAGTTACCATAGCGAATCTTATCTCCCT
* *
8701295 GAAGTTGCAGTGGAGCAGATTGAAGCCACAAATTTTATCTCCCTGAAGTTGCAGTAGAGCATATC
66 GAAGTTGCAGTGGAGCAGATTGAAGCCACAAATTTTATCTCCCTAAAGTTACAGTAGAGCATATC
* * ** * **
8701360 GAAGTTACCATGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCACAAATTTT
131 GAAGTTACCATGGCAAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTT
* * *
8701425 ATCTCCCTGAAGTTGCAGTAGAGCATATCGAAGTTATCATGGCGAATCTTATCTCTTTGAAGTTG
196 ATCTCCCTAAAGTTGCAGTAGAGAATATCGAAGTTA-CA-----AATCTTATCTCCTTGAAGTTG
*
8701490 CAGTGGAGCAGATTGAAGCCAT
255 CAGTGGAGCAGACTGAAGCCAT
* *** * * *
8701512 AAATTTTATCTCATTAAAGTTGCAATGGAGCATATTGCAGTTATCATGGCGAATCTTATCTCCTT
1 AAATTTTATCTCACTAAAGTTGCAATGGAGCATATCAAAGTTACCATAGCGAATCTTATCTCCCT
*
8701577 GAAGTTGTAGTGGAGCAGATTGAAGCCACAAATTTTATCTCCCTAAAGTTACAGTAGAGCATATC
66 GAAGTTGCAGTGGAGCAGATTGAAGCCACAAATTTTATCTCCCTAAAGTTACAGTAGAGCATATC
* *
8701642 GAAGTTATCATGGCAAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACGAACCTT
131 GAAGTTACCATGGCAAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTT
* * *
8701707 ATCTCCTTAAAGTTGCAGT-G-GAATAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGT
196 ATCTCCCTAAAGTTGCAGTAGAGAATA--TCGAAGTTACAAATCTTATCTCCTTGAAGTTGCAGT
*
8701770 GGAGTAGACTGAAG
259 GGAGCAGACTGAAG
8701784 ATAGCAAATC
Statistics
Matches: 240, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
276 35 0.15
280 4 0.02
281 3 0.01
282 198 0.82
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (276 bp):
AAATTTTATCTCACTAAAGTTGCAATGGAGCATATCAAAGTTACCATAGCGAATCTTATCTCCCT
GAAGTTGCAGTGGAGCAGATTGAAGCCACAAATTTTATCTCCCTAAAGTTACAGTAGAGCATATC
GAAGTTACCATGGCAAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCACAAACCTT
ATCTCCCTAAAGTTGCAGTAGAGAATATCGAAGTTACAAATCTTATCTCCTTGAAGTTGCAGTGG
AGCAGACTGAAGCCAT
Found at i:8701816 original size:45 final size:44
Alignment explanation
Indices: 8701655--8702132 Score: 144
Period size: 44 Copynumber: 10.5 Consensus size: 44
8701645 GTTATCATGG
* * ** * * **
8701655 CAAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAGATA
* * * * ** *
8701699 CGAACCTTATCTCCTTAAAGTTGCAGTGGAATAGGTTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAGATA
* * *
8701743 CAAGTCTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAGATA
* * * * *
8701787 GCAAATCTTGTTTCCCTGAAGTTGCAGTGGAACAGATTAAAGTTATGAGTTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACT---G--A--AGATA
* * * * ** *
8701839 CAAGTCCTATAC-CTCTGAAGTTGCAGTAGG--TCGGACCAAATCTATCA
1 CAAATCTTAT-CTCCCTGAAGTTGCAGT-GGAAT-AGACTGAA--GAT-A
* ** * * **
8701886 TTGCGAATCTTATCTCAATGAAGTTGTAGTGGAGTAGA-TGAAAGCCA
1 ---CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTG-AAGATA
* *
8701933 CAAAACTTATCTCCCTGAAGTTGCAGTGGAACA-ACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAGATA
* ** * * ** * *
8701976 GGAAATCTTATCTCTTTGAAGTTACAGTAGAGCAGATTAAAGCA-A
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAG-ATA
* * * * * *
8702021 TAAACCTTATCTCCTTGAAGTTACAGTGGAGCA-AG-TTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGA--ATAGACTGAAGATA
* * ** * *
8702065 CAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAGTTAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAGAT-A
*
8702110 CAAATCTGATCTCCCTGAAGTTG
1 CAAATCTTATCTCCCTGAAGTTG
8702133 GAATAGAGCA
Statistics
Matches: 314, Mismatches: 89, Indels: 61
0.68 0.19 0.13
Matches are distributed among these distances:
43 7 0.02
44 185 0.59
45 59 0.19
46 3 0.01
47 2 0.01
48 1 0.00
49 3 0.01
50 24 0.08
51 24 0.08
52 6 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGACTGAAGATA
Found at i:8701961 original size:44 final size:44
Alignment explanation
Indices: 8701891--8702132 Score: 179
Period size: 44 Copynumber: 5.5 Consensus size: 44
8701881 TATCATTGCG
** * * *
8701891 AATCTTATCTCAATGAAGTTGTAGTGGAGTAGATGAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAGCAACA
* * *
8701935 AAACTTATCTCCCTGAAGTTGCAGTGGAACA-ACTG-AAG-ATAGGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAAGCA-A-CA
** * * * *
8701979 AATCTTATCTCTTTGAAGTTACAGTAGAGCAGATTAAAGCAATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAGCAACA
* * * * **
8702023 AACCTTATCTCCTTGAAGTTACAGTGGAGCAAGTTG-AAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATGAAAGCAACA
* * *
8702067 AGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-AAAGTTAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAAG-CAACA
*
8702112 AATCTGATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTG
8702133 GAATAGAGCA
Statistics
Matches: 154, Mismatches: 34, Indels: 19
0.74 0.16 0.09
Matches are distributed among these distances:
43 7 0.05
44 116 0.75
45 30 0.19
46 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAGCAACA
Found at i:8702018 original size:88 final size:88
Alignment explanation
Indices: 8701891--8702132 Score: 243
Period size: 88 Copynumber: 2.7 Consensus size: 88
8701881 TATCATTGCG
* * * *
8701891 AATCTTATCTCAATGAAGTTGTAGTGGAGTAGATGAAAGCCACAAAACTTATCTCCCTGAAGTTG
1 AATCTTATCTCAATGAAGTTGCAGTGGAGCAGATTAAAGCAACAAAACTTATCTCCCTGAAGTTG
*
8701956 CAGTGGAACAA-CTGAAGATAGGA
66 CAGTGGAACAAGCTGAAGATA-CA
** * * * * * *
8701979 AATCTTATCTCTTTGAAGTTACAGTAGAGCAGATTAAAGCAATAAACCTTATCTCCTTGAAGTTA
1 AATCTTATCTCAATGAAGTTGCAGTGGAGCAGATTAAAGCAACAAAACTTATCTCCCTGAAGTTG
* * *
8702044 CAGTGGAGCAAGTTGAAGTTACA
66 CAGTGGAACAAGCTGAAGATACA
* ** * * * * *
8702067 AGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAGTTAACAAATCTGATCTCCCTGAAGTT
1 AATCTTATCTCAATGAAGTTGCAGTGGAGCAGATTAAAG-CAACAAAACTTATCTCCCTGAAGTT
8702132 G
65 G
8702133 GAATAGAGCA
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
88 96 0.78
89 27 0.22
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (88 bp):
AATCTTATCTCAATGAAGTTGCAGTGGAGCAGATTAAAGCAACAAAACTTATCTCCCTGAAGTTG
CAGTGGAACAAGCTGAAGATACA
Found at i:8702142 original size:45 final size:44
Alignment explanation
Indices: 8702059--8702175 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 44
8702049 GAGCAAGTTG
* * * * *
8702059 AAGTTACAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTA
1 AAGTTACAAGTCTGATCTCCCTGAAGTTGCAATAGAGCAAACTA
* * * *
8702103 AAGTTAACAAATCTGATCTCCCTGAAGTTGGAATAGAGCAAATTG
1 AAGTT-ACAAGTCTGATCTCCCTGAAGTTGCAATAGAGCAAACTA
* *
8702148 AAGTTATAGGTCTGATCTCCCTGAAGTT
1 AAGTTACAAGTCTGATCTCCCTGAAGTT
8702176 ATAGTGGAGT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 25 0.42
45 35 0.58
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
AAGTTACAAGTCTGATCTCCCTGAAGTTGCAATAGAGCAAACTA
Found at i:8702154 original size:322 final size:327
Alignment explanation
Indices: 8701553--8702154 Score: 797
Period size: 322 Copynumber: 1.9 Consensus size: 327
8701543 ATATTGCAGT
** **
8701553 TATCATGGCGAATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGCCACAAATTTTATCTC
1 TATCATGGCGAATCTTATCTCAATGAAGTTGTAGTGGAGCAGATTGAAGCCACAAAACTTATCTC
* *
8701618 CCTAAAGTTACAGTAGAGCATATCGAAGTTATCATGGCAAATCCTATCTCCCTGAAGTTACAGTG
66 CCTAAAGTTACAGTAGAACATATCGAAG-TATCATGGCAAATCCTATCTCCCTGAAGTTACAGTA
* * * * *
8701683 GAGCAGATTAAAGCCACGAACCTTATCTCCTTAAAGTTGCAGTGGAATAGGTTGAAGTTACAAGT
130 GAGCAGATTAAAGCAACAAACCTTATCTCCTTAAAGTTACAGTGGAACAAGTTGAAGTTACAAGT
* * * * *
8701748 CTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTGTTTCCCTGAAGTTGCA
195 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACAAATCTTGTCTCCCTGAAGTTGCA
* * *
8701813 GTGGAACAGATTAAAGTTATGAGTTACAAGTCCTATACCTCTGAAGTTGCAGTAGGTCGGACCAA
260 ATAGAACAAATTAAAGTTATGAGTTACAAGTCCTATACCTCTGAAGTTGCAGTAGGTCGGACCAA
8701878 ATC
325 ATC
* *
8701881 TATCATTGCGAATCTTATCTCAATGAAGTTGTAGTGGAGTAGA-TGAAAGCCACAAAACTTATCT
1 TATCATGGCGAATCTTATCTCAATGAAGTTGTAGTGGAGCAGATTG-AAGCCACAAAACTTATCT
* * * * **
8701945 CCCTGAAGTTGCAGTGGAACA-A-CTGAAG-AT-A-GG-AAATCTTATCTCTTTGAAGTTACAGT
65 CCCTAAAGTTACAGTAGAACATATC-GAAGTATCATGGCAAATCCTATCTCCCTGAAGTTACAGT
* * *
8702004 AGAGCAGATTAAAGCAATAAACCTTATCTCCTTGAAGTTACAGTGGAGCAAGTTGAAGTTACAAG
129 AGAGCAGATTAAAGCAACAAACCTTATCTCCTTAAAGTTACAGTGGAACAAGTTGAAGTTACAAG
* *
8702069 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAGTTAACAAATC-TGATCTCCCTGAAGTTG
194 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACAAATCTTG-TCTCCCTGAAGTTG
* * *
8702133 GAATAGAGCAAATTGAAGTTAT
258 CAATAGAACAAATTAAAGTTAT
8702155 AGGTCTGATC
Statistics
Matches: 236, Mismatches: 35, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
321 2 0.01
322 149 0.63
323 2 0.01
324 1 0.00
325 2 0.01
326 1 0.00
327 7 0.03
328 72 0.31
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (327 bp):
TATCATGGCGAATCTTATCTCAATGAAGTTGTAGTGGAGCAGATTGAAGCCACAAAACTTATCTC
CCTAAAGTTACAGTAGAACATATCGAAGTATCATGGCAAATCCTATCTCCCTGAAGTTACAGTAG
AGCAGATTAAAGCAACAAACCTTATCTCCTTAAAGTTACAGTGGAACAAGTTGAAGTTACAAGTC
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAACAAATCTTGTCTCCCTGAAGTTGCAA
TAGAACAAATTAAAGTTATGAGTTACAAGTCCTATACCTCTGAAGTTGCAGTAGGTCGGACCAAA
TC
Found at i:8703682 original size:25 final size:25
Alignment explanation
Indices: 8703652--8703775 Score: 101
Period size: 25 Copynumber: 4.7 Consensus size: 25
8703642 ATTTTAAACC
*
8703652 ATTATTCATTTTAAATTTTATATAT
1 ATTATTTATTTTAAATTTTATATAT
* *
8703677 ATTATTTATTTTAAACTATTATACAT
1 ATTATTTATTTTAAA-TTTTATATAT
* *
8703703 ATGATTTATTTTGAAGTTTTTTTATATAT
1 ATTATTTATTTT-AA---ATTTTATATAT
8703732 ACCTT-TTTATTTTAAACTATTT-TATAT
1 A--TTATTTATTTTAAA-T-TTTATATAT
8703759 ATTATTT-TTTTAAATTT
1 ATTATTTATTTTAAATTT
8703776 CTTACATGTC
Statistics
Matches: 80, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
23 2 0.03
24 1 0.01
25 23 0.29
26 22 0.28
27 9 0.11
28 3 0.04
29 11 0.14
30 8 0.10
31 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.60
Consensus pattern (25 bp):
ATTATTTATTTTAAATTTTATATAT
Found at i:8703709 original size:26 final size:25
Alignment explanation
Indices: 8703659--8703714 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
8703649 ACCATTATTC
* * *
8703659 ATTTTAAATTTTATATATATTATTT
1 ATTTTAAATATTATACATATGATTT
8703684 ATTTTAAACTATTATACATATGATTT
1 ATTTTAAA-TATTATACATATGATTT
8703710 ATTTT
1 ATTTT
8703715 GAAGTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (25 bp):
ATTTTAAATATTATACATATGATTT
Found at i:8703767 original size:29 final size:28
Alignment explanation
Indices: 8703666--8703772 Score: 100
Period size: 26 Copynumber: 3.9 Consensus size: 28
8703656 TTCATTTTAA
8703666 ATTTTATATATATTATTTATTTTAAACT
1 ATTTTATATATATTATTTATTTTAAACT
* * **
8703694 A--TTATACATATGATTTATTTTGAAGTT
1 ATTTTATATATATTATTTATTTT-AAACT
*
8703721 TTTTTATATATACCTT-TTTATTTTAAACT
1 ATTTTATATATA--TTATTTATTTTAAACT
8703750 A-TTT-TATATATTATTT-TTTTAAA
1 ATTTTATATATATTATTTATTTTAAA
8703773 TTTCTTACAT
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
25 9 0.14
26 21 0.33
27 9 0.14
28 4 0.06
29 11 0.17
30 8 0.13
31 1 0.02
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (28 bp):
ATTTTATATATATTATTTATTTTAAACT
Found at i:8704143 original size:22 final size:21
Alignment explanation
Indices: 8704118--8704159 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8704108 TATATGTATT
8704118 ATTTATTTAAAATTGTCTTATG
1 ATTTATTTAAAATTGT-TTATG
* *
8704140 ATTTGTTTTAAATTGTTTAT
1 ATTTATTTAAAATTGTTTAT
8704160 ATTATTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (21 bp):
ATTTATTTAAAATTGTTTATG
Found at i:8706847 original size:31 final size:31
Alignment explanation
Indices: 8706787--8706847 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
8706777 ACTTTAATGC
*
8706787 CTAATATTATCAAACATTCTTAGTGTAGTCT
1 CTAATATTATCAAACATTCTTACTGTAGTCT
* *
8706818 CTAATGTTATCAAATATTCTTGACT-TAGTC
1 CTAATATTATCAAACATTCTT-ACTGTAGTC
8706848 CATTGAACGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (31 bp):
CTAATATTATCAAACATTCTTACTGTAGTCT
Found at i:8707108 original size:12 final size:10
Alignment explanation
Indices: 8707062--8707122 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 10
8707052 AATAAATAAT
8707062 AAAATTATTA
1 AAAATTATTA
8707072 AAAATTATTA
1 AAAATTATTA
* *
8707082 GAAATTGTT-
1 AAAATTATTA
8707091 --AATTATGTAA
1 AAAATTAT-T-A
8707101 AAAATTATTA
1 AAAATTATTA
8707111 AAAATTA-TA
1 AAAATTATTA
8707120 AAA
1 AAA
8707123 GACGGTAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
7 5 0.12
8 1 0.02
9 5 0.12
10 25 0.58
11 1 0.02
12 6 0.14
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (10 bp):
AAAATTATTA
Found at i:8707148 original size:27 final size:29
Alignment explanation
Indices: 8707100--8707162 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 29
8707090 TAATTATGTA
* * *
8707100 AAAAATTATTAAAAATTATAAAAGAC-GGT
1 AAAAATTATAAAAAAGTATAAAA-ACTAGT
8707129 AAAAATTA-AAAAAAGT-TAAAAACTAGT
1 AAAAATTATAAAAAAGTATAAAAACTAGT
8707156 AAAAATT
1 AAAAATT
8707163 GTGTAACTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 14 0.47
28 6 0.20
29 8 0.27
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.25
Consensus pattern (29 bp):
AAAAATTATAAAAAAGTATAAAAACTAGT
Found at i:8707737 original size:11 final size:10
Alignment explanation
Indices: 8707694--8707759 Score: 50
Period size: 9 Copynumber: 6.9 Consensus size: 10
8707684 AAAATATCCA
8707694 ATATATTTTT
1 ATATATTTTT
* *
8707704 A-AAAATTTT
1 ATATATTTTT
*
8707713 AGTAAATTTTT
1 A-TATATTTTT
*
8707724 ATAT-TTTAT
1 ATATATTTTT
8707733 ATATATTTTT
1 ATATATTTTT
*
8707743 -TGTATTTTT
1 ATATATTTTT
8707752 ATA-ATTTT
1 ATATATTTT
8707760 ATAGTTTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
9 28 0.64
10 8 0.18
11 8 0.18
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
ATATATTTTT
Found at i:8708118 original size:8 final size:9
Alignment explanation
Indices: 8708093--8708130 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
8708083 ATAAAAAATA
8708093 AAAATTTTT
1 AAAATTTTT
**
8708102 AATTTTTTT
1 AAAATTTTT
8708111 AAAATTTTT
1 AAAATTTTT
8708120 AAAATTTTT
1 AAAATTTTT
8708129 AA
1 AA
8708131 TAAATAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AAAATTTTT
Found at i:8714126 original size:28 final size:27
Alignment explanation
Indices: 8714062--8714126 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
8714052 ACATAAATTG
* * *
8714062 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
8714089 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
8714118 AAAATAAAA
1 AAAATAAAA
8714127 ATATATATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:8716013 original size:56 final size:56
Alignment explanation
Indices: 8715927--8716039 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
8715917 AAACAATACC
* * *
8715927 CAGGAAAGAATTCACCTAGCTTTCATCTGTCACTATCAATCTAAATTACTCAATTT
1 CAGGAAAGAATTCACCTAGATTTCATCTGTCACTATCAATCTAAAGTACACAATTT
*
8715983 CAGGAAAGAATTCACCTAGATTTCATCTGTCACTATCAATTTAAAGTACACAATTT
1 CAGGAAAGAATTCACCTAGATTTCATCTGTCACTATCAATCTAAAGTACACAATTT
8716039 C
1 C
8716040 TTAACTTAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (56 bp):
CAGGAAAGAATTCACCTAGATTTCATCTGTCACTATCAATCTAAAGTACACAATTT
Found at i:8717633 original size:22 final size:22
Alignment explanation
Indices: 8717608--8717658 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
8717598 AATCAAAATT
8717608 TTTTTACTTCATTTC-TTTTTTC
1 TTTTTACTTC-TTTCTTTTTTTC
8717630 TTTTT-CTTCTTTCTTTTTTTTC
1 TTTTTACTTCTTTC-TTTTTTTC
8717652 TTTTTAC
1 TTTTTAC
8717659 GAGTGAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.15
21 4 0.15
22 17 0.65
23 1 0.04
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTTTACTTCTTTCTTTTTTTC
Found at i:8717635 original size:13 final size:13
Alignment explanation
Indices: 8717619--8717654 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
8717609 TTTTACTTCA
*
8717619 TTTCTTTTTTCTT
1 TTTCTTCTTTCTT
8717632 TTTCTTCTTTCTT
1 TTTCTTCTTTCTT
*
8717645 TTTTTTCTTT
1 TTTCTTCTTT
8717655 TTACGAGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTCTTCTTTCTT
Found at i:8717639 original size:16 final size:16
Alignment explanation
Indices: 8717620--8717653 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
8717610 TTTACTTCAT
8717620 TTCTTT-TTTCTTTTTC
1 TTCTTTCTTT-TTTTTC
8717636 TTCTTTCTTTTTTTTC
1 TTCTTTCTTTTTTTTC
8717652 TT
1 TT
8717654 TTTACGAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTCTTTCTTTTTTTTC
Found at i:8718602 original size:6 final size:6
Alignment explanation
Indices: 8718584--8718628 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
8718574 TCACAAATAA
* * * *
8718584 AAAAAT AACAAT AAAAAT AAAATT ACAACT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
8718629 TAAAACAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:8718616 original size:18 final size:17
Alignment explanation
Indices: 8718585--8718623 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
8718575 CACAAATAAA
8718585 AAAATAACAATAAAAAT
1 AAAATAACAATAAAAAT
*
8718602 AAAATTACAACTAAAAAT
1 AAAATAACAA-TAAAAAT
8718620 AAAA
1 AAAA
8718624 ATAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAATAACAATAAAAAT
Found at i:8725356 original size:22 final size:22
Alignment explanation
Indices: 8725328--8725369 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8725318 TATTTAGATT
*
8725328 TAGAGCATATTAGATACAAACA
1 TAGAGCATATCAGATACAAACA
*
8725350 TAGAGCATATCATATACAAA
1 TAGAGCATATCAGATACAAA
8725370 TTCAAAGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.24
Consensus pattern (22 bp):
TAGAGCATATCAGATACAAACA
Found at i:8735599 original size:17 final size:17
Alignment explanation
Indices: 8735577--8735614 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
8735567 CAGTTATGAA
*
8735577 CTAAAACCCCTAAATAC
1 CTAAAAACCCTAAATAC
8735594 CTAAAAACCCTAAATAC
1 CTAAAAACCCTAAATAC
8735611 CTAA
1 CTAA
8735615 GGGGAATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (17 bp):
CTAAAAACCCTAAATAC
Found at i:8750279 original size:44 final size:44
Alignment explanation
Indices: 8750229--8750384 Score: 159
Period size: 44 Copynumber: 3.5 Consensus size: 44
8750219 TTGTGGCAAG
* * * *
8750229 TCTTATCTCCCTGAAGTTGTAGTGGATCAGATCAAAGCCACATA
1 TCTTATCTCCCTGAAGTTGCAGTAGATCAGATCAAAGCTACAAA
* * * * * *
8750273 TCTTATCTCCTTAAAGTTGTACTAGATTAGATCAAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGATCAGATCAAAGCTA-CAAA
* * * *
8750318 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAA
1 TCTTATCTCCCTGAAGTTGCAGTAGATCAGATCAAAGCTACAAA
* *
8750362 CCTTATCTCCTTGAAGTTGCAGT
1 TCTTATCTCCCTGAAGTTGCAGT
8750385 GGAGTAGGTT
Statistics
Matches: 90, Mismatches: 21, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
44 56 0.62
45 34 0.38
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTAGATCAGATCAAAGCTACAAA
Done.