Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 34 of 253
Found at i:8750667 original size:44 final size:44
Alignment explanation
Indices: 8750603--8750763 Score: 153
Period size: 44 Copynumber: 3.6 Consensus size: 44
8750593 TATTATGGCG
* * *
8750603 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGCCACA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCTACA
* * * ** * * *
8750647 GATCTTATCTCTCTGAAGTTGCAGAGAAGTAGATCGAGGATAGTA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCTA-CA
* * * * *
8750692 AATCTTATCTCTCTGAGGTTGTAGTAGAGCATATTAAAGCTACA
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCTACA
8750736 AATCTTATCTCTCTGATA-TTGCAGTGGA
1 AATCTTATCTCTCTGA-AGTTGCAGTGGA
8750764 ACAGATTGAA
Statistics
Matches: 88, Mismatches: 27, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
44 57 0.65
45 31 0.35
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCTACA
Found at i:8753016 original size:166 final size:166
Alignment explanation
Indices: 8752680--8753018 Score: 565
Period size: 166 Copynumber: 2.0 Consensus size: 166
8752670 TCTTCATTGT
* * *
8752680 ATTTTTTTTACGCATATTGAAATATGCATATTAAATAGTAGAAAAAGAGAAATCAAAAAATTATC
1 ATTTTTTTTACGCATATTGAAATACGCATATTAAATAGCAGAAAAAAAGAAATCAAAAAATTATC
8752745 GAAAGGTGATTTCAAATCCTATTTCTTTTTTTCCCCCTTTTCTTTCGATTTGCTTGTAATTTTTT
66 GAAAGGTG------AATCCTATTTCTTTTTTTCCCCCTTTTCTTTCGATTTGCTTGTAATTTTTT
8752810 AGCATGGAAAATGAAAAGAATGCTTGAAACAACACCGATGAA
125 AGCATGGAAAATGAAAAGAATGCTTGAAACAACACCGATGAA
8752852 ATTTTTTTTACGCATATTGAAATACGCATATTAAATAGCAGAAAAAAAGAAATCAAAAAATTATC
1 ATTTTTTTTACGCATATTGAAATACGCATATTAAATAGCAGAAAAAAAGAAATCAAAAAATTATC
8752917 GAAAGGTG-A-CCTATTTCTTTTTTTTCCCTCCTTTTCTTTCGATTTGCTTGTAATTTTTTAGCA
66 GAAAGGTGAATCCTATTTC-TTTTTTTCCC-CCTTTTCTTTCGATTTGCTTGTAATTTTTTAGCA
8752980 TGGAAAATGAAAAGAATGCTTGAAACAACACCGATGAA
129 TGGAAAATGAAAAGAATGCTTGAAACAACACCGATGAA
8753018 A
1 A
8753019 GCCCATATGT
Statistics
Matches: 162, Mismatches: 3, Indels: 10
0.93 0.02 0.06
Matches are distributed among these distances:
164 8 0.05
165 11 0.07
166 73 0.45
172 70 0.43
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (166 bp):
ATTTTTTTTACGCATATTGAAATACGCATATTAAATAGCAGAAAAAAAGAAATCAAAAAATTATC
GAAAGGTGAATCCTATTTCTTTTTTTCCCCCTTTTCTTTCGATTTGCTTGTAATTTTTTAGCATG
GAAAATGAAAAGAATGCTTGAAACAACACCGATGAA
Found at i:8754496 original size:17 final size:17
Alignment explanation
Indices: 8754470--8754613 Score: 130
Period size: 17 Copynumber: 8.4 Consensus size: 17
8754460 ACGAGATTTT
8754470 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
*
8754488 TTTTCAAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
* **
8754505 TTTTTGAAAACAAGAGGA
1 TTTTT-AAAACACGAAAA
* *
8754523 TTTTTGAAATACGAAAAA
1 TTTTTAAAACACG-AAAA
*
8754541 TTTTGAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
8754558 TTTTTGAAACACGGAAA
1 TTTTTAAAACACGAAAA
*
8754575 TTTTTGAAA-ACGAAAA
1 TTTTTAAAACACGAAAA
* *
8754591 TTTTTGAAACACAAAAA
1 TTTTTAAAACACGAAAA
8754608 TTTTTA
1 TTTTTA
8754614 GAAGACACTA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
16 15 0.15
17 57 0.56
18 30 0.29
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:8754516 original size:35 final size:35
Alignment explanation
Indices: 8754470--8754632 Score: 170
Period size: 35 Copynumber: 4.7 Consensus size: 35
8754460 ACGAGATTTT
**
8754470 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* ** *
8754505 TTTTTGAAAACAAGAGGATTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCG-AAA
* *
8754540 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
**
8754575 TTTTTG-AAA-ACGAAAATTTTTGAAACACAAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* * *
8754608 TTTTTAGAAGACACTAAAAATTTTG
1 TTTTT-GAAAACACGAAAATTTTTG
8754633 GAAAATGGAT
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
33 27 0.26
34 6 0.06
35 60 0.57
36 12 0.11
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.30
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:8754849 original size:20 final size:19
Alignment explanation
Indices: 8754811--8754857 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8754801 GAATATATTT
8754811 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
8754831 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
8754850 -TTTTGAAA
1 TTTTTGAAA
8754858 AATAGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:8755230 original size:8 final size:8
Alignment explanation
Indices: 8755217--8755310 Score: 82
Period size: 8 Copynumber: 11.0 Consensus size: 8
8755207 TTGAAACTCT
8755217 TTTTTTTC
1 TTTTTTTC
8755225 TTTTTTTC
1 TTTTTTTC
8755233 TTCTTTTTTCC
1 -T-TTTTTT-C
*
8755244 TTTTTTCC
1 TTTTTTTC
8755252 TTTTTTTCTC
1 -TTTTTT-TC
*
8755262 TTTTTTTT
1 TTTTTTTC
8755270 TTCTTCTTTC
1 TT-TT-TTTC
8755280 TTTTTTTC
1 TTTTTTTC
8755288 -TTTTTTC
1 TTTTTTTC
* *
8755295 TTTCTCTC
1 TTTTTTTC
8755303 TTTTTTTC
1 TTTTTTTC
8755311 CTGGCCTGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
7 7 0.10
8 27 0.39
9 22 0.31
10 13 0.19
11 1 0.01
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTTC
Found at i:8755264 original size:37 final size:38
Alignment explanation
Indices: 8755213--8755308 Score: 124
Period size: 37 Copynumber: 2.5 Consensus size: 38
8755203 CGAATTGAAA
*
8755213 CTCTTTTTTT-TCTTTTTTTCTTCTTTTTTCCTTTTTT
1 CTCTTTTTTTCTCTTTTTTTCTTCTTCTTTCCTTTTTT
* *
8755250 C-CTTTTTTTCTCTTTTTTTTTTCTTCTTTCTTTTTTT
1 CTCTTTTTTTCTCTTTTTTTCTTCTTCTTTCCTTTTTT
*
8755287 CTTTTTTCTTTCTCTCTTTTTT
1 CTCTTTT-TTTCTCT-TTTTTT
8755309 TCCTGGCCTG
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
36 8 0.16
37 26 0.51
38 4 0.08
39 7 0.14
40 6 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (38 bp):
CTCTTTTTTTCTCTTTTTTTCTTCTTCTTTCCTTTTTT
Found at i:8755298 original size:26 final size:25
Alignment explanation
Indices: 8755222--8755309 Score: 104
Period size: 26 Copynumber: 3.4 Consensus size: 25
8755212 ACTCTTTTTT
* *
8755222 TTCTTTTTTTCTTCTTTTTTCCTTTT
1 TTCTTTTTTTTTTCTTTTTT-CTTTC
* * *
8755248 TTCCTTTTTTTCTCTTTTTTTTTTC
1 TTCTTTTTTTTTTCTTTTTTCTTTC
8755273 TTCTTTCTTTTTTTCTTTTTTCTTTC
1 TTCTTT-TTTTTTTCTTTTTTCTTTC
8755299 TCTCTTTTTTT
1 T-TCTTTTTTT
8755310 CCTGGCCTGC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
25 8 0.15
26 39 0.75
27 5 0.10
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (25 bp):
TTCTTTTTTTTTTCTTTTTTCTTTC
Found at i:8755440 original size:20 final size:21
Alignment explanation
Indices: 8755400--8755440 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8755390 TGTGGCCTGC
*
8755400 TTCTTTTTTCTGGGCTGTTTT
1 TTCTTTTTTCTGGGCTCTTTT
*
8755421 TTCTTTTTTTTGGGC-CTTTT
1 TTCTTTTTTCTGGGCTCTTTT
8755441 CTTTTTGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.00, C:0.15, G:0.17, T:0.68
Consensus pattern (21 bp):
TTCTTTTTTCTGGGCTCTTTT
Found at i:8755460 original size:15 final size:15
Alignment explanation
Indices: 8755423--8755492 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 15
8755413 GCTGTTTTTT
8755423 CTTTTTTTTGGGC--
1 CTTTTTTTTGGGCTG
8755436 CTTTTCTTTTTGGGCTG
1 C-TTT-TTTTTGGGCTG
***
8755453 CTTTTTTTTGCTTTG
1 CTTTTTTTTGGGCTG
*
8755468 GTTTTTTTTGGGCTG
1 CTTTTTTTTGGGCTG
*
8755483 ATTTGTTTTT
1 CTTT-TTTTT
8755493 TTTGTGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
13 1 0.02
14 3 0.07
15 31 0.70
16 8 0.18
17 1 0.02
ACGTcount: A:0.01, C:0.11, G:0.21, T:0.66
Consensus pattern (15 bp):
CTTTTTTTTGGGCTG
Found at i:8755506 original size:30 final size:29
Alignment explanation
Indices: 8755442--8755506 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
8755432 GGGCCTTTTC
* *
8755442 TTTTTGGGCTGCTTTTTTTTGCTTTGGTTT
1 TTTTTGGGCTGATTTTTTTT-CTTTGGTTG
8755472 TTTTTGGGCTGATTTGTTTTT-TTTGTGTTG
1 TTTTTGGGCTGATTT-TTTTTCTTTG-GTTG
8755502 TTTTT
1 TTTTT
8755507 TTTAATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 4 0.13
30 22 0.71
31 5 0.16
ACGTcount: A:0.02, C:0.06, G:0.23, T:0.69
Consensus pattern (29 bp):
TTTTTGGGCTGATTTTTTTTCTTTGGTTG
Found at i:8755628 original size:3 final size:3
Alignment explanation
Indices: 8755622--8755657 Score: 54
Period size: 3 Copynumber: 11.3 Consensus size: 3
8755612 TTTTTTTTCT
8755622 TTC TTC TTC TTTC TTTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC -TTC -TTC TTC TTC TTC TTC TTC TTC T
8755658 CCTCCTCCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 25 0.78
4 7 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:8755761 original size:10 final size:10
Alignment explanation
Indices: 8755726--8755775 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
8755716 ACGCCGGTAC
8755726 TCTT-TCTTT
1 TCTTCTCTTT
* *
8755735 TCTTCTCCTC
1 TCTTCTCTTT
8755745 T-TTCTCTTT
1 TCTTCTCTTT
8755754 TCTTCTCTTT
1 TCTTCTCTTT
*
8755764 TCTTCTTTTT
1 TCTTCTCTTT
8755774 TC
1 TC
8755776 CTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:8755773 original size:19 final size:19
Alignment explanation
Indices: 8755730--8755772 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
8755720 CGGTACTCTT
8755730 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCTTCTCCTCTTTC
8755749 TCTTTTCTTCT-CT-TTTC
1 TCTTTTCTTCTCCTCTTTC
8755766 TTCTTTT
1 -TCTTTT
8755773 TTCCTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TCTTTTCTTCTCCTCTTTC
Found at i:8756082 original size:30 final size:30
Alignment explanation
Indices: 8756039--8756140 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
8756029 ATTTAGGATT
* *
8756039 AAAATGGAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
8756069 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
8756099 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
8756129 AAAATGTAATTT
1 AAAATGAAATTT
8756141 TTATTTTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.43, C:0.03, G:0.24, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:8756598 original size:54 final size:55
Alignment explanation
Indices: 8756411--8756629 Score: 333
Period size: 54 Copynumber: 4.1 Consensus size: 55
8756401 CACGTGAGCC
* *
8756411 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-AA
*
8756466 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAG-AA---AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAA
* *
8756518 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
8756572 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
8756627 AAG
1 AAG
8756630 TAGAAATTGA
Statistics
Matches: 152, Mismatches: 6, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
51 14 0.09
52 36 0.24
54 52 0.34
55 37 0.24
56 7 0.05
57 6 0.04
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
Found at i:8756627 original size:14 final size:14
Alignment explanation
Indices: 8756608--8756642 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8756598 GAGTTGATTT
8756608 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
8756622 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
8756636 TTGAAAA
1 TTGAAAA
8756643 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:8756923 original size:15 final size:16
Alignment explanation
Indices: 8756890--8756923 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8756880 TTGATTTTTG
*
8756890 AAAAACATAGATTGAA
1 AAAAACATAAATTGAA
8756906 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
8756922 AA
1 AA
8756924 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.09, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:8756967 original size:91 final size:90
Alignment explanation
Indices: 8756731--8756997 Score: 311
Period size: 91 Copynumber: 3.0 Consensus size: 90
8756721 AATAGAAATT
* * *
8756731 AAAAACAGAATTTG-AAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
* *
8756795 TTGA--TTTG-AAAA-GTAGAATTAG
65 TTGATTTTTGAAAAACATAGAATTAA
* * * *
8756817 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
8756880 TTGATTTTTGAAAAACATAG-ATTGAA
65 TTGATTTTTGAAAAACATAGAATT-AA
* *
8756906 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGAAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
*
8756970 GTTGATTTTTGAAAAACA-AAAATTAA
64 GTTGATTTTTGAAAAACATAGAATTAA
8756996 AA
1 AA
8756998 GGCTTAACTC
Statistics
Matches: 153, Mismatches: 16, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
84 3 0.02
85 33 0.22
86 11 0.07
87 15 0.10
88 7 0.05
89 28 0.18
90 5 0.03
91 48 0.31
93 3 0.02
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (90 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTTTGAAAAACATAGAATTAA
Found at i:8757404 original size:192 final size:192
Alignment explanation
Indices: 8756942--8757945 Score: 1767
Period size: 192 Copynumber: 5.2 Consensus size: 192
8756932 CATGTGAGCC
** * *
8756942 GAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
*
8757007 CACCTCTCTCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
* * *
8757072 AACTCATTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAAATTTAAAAATACCTCAATGTGTCT
130 AACTCACTTCTCGCAATATGAGTTGATTTTTT---TAAAAAATTTAAAAATACCTCAACGTGTCT
8757137 T
192 T
8757138 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
* *
8757203 ACCTCTCGCAACATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCATGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
*
8757268 ACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8757330 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
*
8757395 ATCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
* *
8757460 ACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8757522 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8757587 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8757652 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8757714 GAGGCTCAACTCATTTCTCGC-ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
* *
8757778 ACCTCTCGCAATATGAGTCAATTTAGAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGTTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
*
8757843 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAAAAAATTAAAAATACCTCAACGTGTCT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTT----AAAAAATTTAAAAATACCTCAACGTGTCT
8757908 T
192 T
*
8757909 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
8757946 CCTTGGAAAG
Statistics
Matches: 781, Mismatches: 22, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
191 138 0.18
192 426 0.55
195 173 0.22
196 44 0.06
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (192 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:8769645 original size:21 final size:20
Alignment explanation
Indices: 8769606--8769645 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8769596 AAAACCAAAA
* *
8769606 TTTGAAACACGAGATTTTTT
1 TTTGAAACACGAAAATTTTT
8769626 TTTGAAAACACGAAAATTTT
1 TTTG-AAACACGAAAATTTT
8769646 CAAAACACCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (20 bp):
TTTGAAACACGAAAATTTTT
Found at i:8769657 original size:18 final size:17
Alignment explanation
Indices: 8769625--8769763 Score: 119
Period size: 17 Copynumber: 8.2 Consensus size: 17
8769615 CGAGATTTTT
8769625 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
* *
8769642 TTTTCAAAACACCGAAAT
1 TTTTGAAAACA-CGAAAA
* * *
8769660 TTTTGAAAACAAGAGGAT
1 TTTTGAAAACACGA-AAA
*
8769678 TTTTG-AAATACGAAAAA
1 TTTTGAAAACACG-AAAA
8769695 TTTTGAAAAC-CGAAAA
1 TTTTGAAAACACGAAAA
*
8769711 TTTT-AAAACACGGAAAT
1 TTTTGAAAACAC-GAAAA
8769728 TTTTG-AAA-ACGAAAA
1 TTTTGAAAACACGAAAA
*
8769743 TTTTTG-AAACACAAAAA
1 -TTTTGAAAACACGAAAA
8769760 TTTT
1 TTTT
8769764 TAGAAGACAC
Statistics
Matches: 100, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
15 9 0.09
16 23 0.23
17 42 0.42
18 26 0.26
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (17 bp):
TTTTGAAAACACGAAAA
Found at i:8769764 original size:17 final size:17
Alignment explanation
Indices: 8769624--8769788 Score: 106
Period size: 17 Copynumber: 9.5 Consensus size: 17
8769614 ACGAGATTTT
*
8769624 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACAAAAA
** **
8769642 TTTTCAAAACACCGAAA
1 TTTTTGAAACACAAAAA
*
8769659 TTTTTGAAA-ACAAGAGGA
1 TTTTTGAAACACAA-A-AA
*
8769677 TTTTTGAAATACGAAAAA
1 TTTTTGAAACAC-AAAAA
*
8769695 -TTTTGAAA-ACCGAAAA
1 TTTTTGAAACA-CAAAAA
* **
8769711 -TTTTAAAACACGGAAA
1 TTTTTGAAACACAAAAA
*
8769727 TTTTTGAAA-ACGAAAA
1 TTTTTGAAACACAAAAA
8769743 TTTTTGAAACACAAAAA
1 TTTTTGAAACACAAAAA
8769760 TTTTTAGAAGACACTAAAAA
1 TTTTT-GAA-ACAC-AAAAA
*
8769780 TTTTGGAAA
1 TTTTTGAAA
8769789 ATGGATTTTT
Statistics
Matches: 119, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
16 34 0.29
17 45 0.38
18 19 0.16
19 10 0.08
20 11 0.09
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.29
Consensus pattern (17 bp):
TTTTTGAAACACAAAAA
Found at i:8769778 original size:19 final size:18
Alignment explanation
Indices: 8769656--8769788 Score: 75
Period size: 16 Copynumber: 7.7 Consensus size: 18
8769646 CAAAACACCG
8769656 AAATTTTTGAAA-ACAAGA
1 AAATTTTTGAAACACAA-A
** * *
8769674 GGATTTTTGAAATACGAA
1 AAATTTTTGAAACACAAA
**
8769692 AAA-TTTTGAAA-ACCGA
1 AAATTTTTGAAACACAAA
* **
8769708 AAA-TTTTAAAACAC-GG
1 AAATTTTTGAAACACAAA
*
8769724 AAATTTTTGAAA-AC-GA
1 AAATTTTTGAAACACAAA
8769740 AAATTTTTGAAACAC-AA
1 AAATTTTTGAAACACAAA
*
8769757 AAATTTTTAGAAGACACTAA
1 AAATTTTT-GAA-ACACAAA
*
8769777 AAATTTTGGAAA
1 AAATTTTTGAAA
8769789 ATGGATTTTT
Statistics
Matches: 95, Mismatches: 13, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
16 32 0.34
17 28 0.29
18 16 0.17
19 10 0.11
20 9 0.09
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (18 bp):
AAATTTTTGAAACACAAA
Found at i:8769999 original size:20 final size:19
Alignment explanation
Indices: 8769961--8770007 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8769951 AATATTTTTT
8769961 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
8769981 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
8770000 -TTTTGAAA
1 TTTTTGAAA
8770008 AATAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:8770362 original size:1 final size:1
Alignment explanation
Indices: 8770356--8770450 Score: 55
Period size: 1 Copynumber: 95.0 Consensus size: 1
8770346 ATTGAAACTC
* * * ** ** * * * *
8770356 TTTTTTTTTTCTTTTTTCTTCTTTTTTCCTTTTTTCCTTTTTTTTTCTTTTCTTTTTTTCTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
8770421 TCTTTTTTTTTTTTTCTTTCTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8770451 CCTGGCCTGC
Statistics
Matches: 68, Mismatches: 26, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (1 bp):
T
Found at i:8770372 original size:8 final size:8
Alignment explanation
Indices: 8770359--8770439 Score: 80
Period size: 8 Copynumber: 10.4 Consensus size: 8
8770349 GAAACTCTTT
8770359 TTTTTTTC
1 TTTTTTTC
8770367 TTTTTTCTTC
1 -TTTTT-TTC
*
8770377 TTTTTTCC
1 TTTTTTTC
*
8770385 TTTTTTCC
1 TTTTTTTC
8770393 TTTTTTT-
1 TTTTTTTC
*
8770400 TTCTTTTC
1 TTTTTTTC
8770408 TTTTTTTC
1 TTTTTTTC
*
8770416 -TTCTTTC
1 TTTTTTTC
8770423 -TTTTTT-
1 TTTTTTTC
8770429 TTTTTTTC
1 TTTTTTTC
8770437 TTT
1 TTT
8770440 CTCTTTTTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
7 23 0.37
8 26 0.42
9 10 0.16
10 3 0.05
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTC
Found at i:8770397 original size:34 final size:31
Alignment explanation
Indices: 8770354--8770447 Score: 104
Period size: 32 Copynumber: 2.9 Consensus size: 31
8770344 GAATTGAAAC
8770354 TCTTT-TTTTTTTCTTTTTTCTTCTTTTTTCCT
1 TCTTTCTTTTTTT-TTTTTTCTTCTTTTTTC-T
*
8770386 TTTTTCCTTTTTTTTTCTTTTC-T-TTTTTTCT
1 TCTTT-CTTTTTTTTT-TTTTCTTCTTTTTTCT
8770417 TCTTTCTTTTTTTTTTTTTCTTTCTCTTTTT
1 TCTTTCTTTTTTTTTTTTTC-TTCT-TTTTT
8770448 TTTCCTGGCC
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
29 5 0.09
30 10 0.19
31 6 0.11
32 12 0.23
33 8 0.15
34 12 0.23
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (31 bp):
TCTTTCTTTTTTTTTTTTTCTTCTTTTTTCT
Found at i:8770450 original size:18 final size:16
Alignment explanation
Indices: 8770356--8770450 Score: 91
Period size: 18 Copynumber: 5.5 Consensus size: 16
8770346 ATTGAAACTC
8770356 TTTTTTTTTTCTTTTT
1 TTTTTTTTTTCTTTTT
*
8770372 TCTTCTTTTTTCCTTTTT
1 T-TT-TTTTTTTCTTTTT
*
8770390 TCCTTTTTTTTTCTTTTC
1 T--TTTTTTTTTCTTTTT
*
8770408 TTTTTTTCTTCTTTCTTT
1 TTTTTTTTTTC-TT-TTT
*
8770426 TTTTTTTTTTCTTTCTC
1 TTTTTTTTTTCTTT-TT
8770443 TTTTTTTT
1 TTTTTTTT
8770451 CCTGGCCTGC
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
16 11 0.17
17 15 0.23
18 37 0.56
19 3 0.05
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTTTTTCTTTTT
Found at i:8770580 original size:14 final size:15
Alignment explanation
Indices: 8770563--8770602 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
8770553 CTGTTTTTTT
8770563 CTTTTTTTTTGGGC-
1 CTTTTTTTTTGGGCG
8770577 CTTTTCTTTTTGGGCTG
1 CTTTT-TTTTTGGGC-G
8770594 CTTTTTTTT
1 CTTTTTTTT
8770603 GCTTTGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.22
15 9 0.39
16 4 0.17
17 5 0.22
ACGTcount: A:0.00, C:0.15, G:0.17, T:0.68
Consensus pattern (15 bp):
CTTTTTTTTTGGGCG
Found at i:8770603 original size:15 final size:15
Alignment explanation
Indices: 8770565--8770633 Score: 52
Period size: 15 Copynumber: 4.5 Consensus size: 15
8770555 GTTTTTTTCT
8770565 TTTTTTTTGGGC--C
1 TTTTTTTTGGGCTGC
8770578 TTTTCTTTTTGGGCTGC
1 -TTT-TTTTTGGGCTGC
*** *
8770595 TTTTTTTTGCTTTGG
1 TTTTTTTTGGGCTGC
*
8770610 TTTTTTTTGGGCTGA
1 TTTTTTTTGGGCTGC
8770625 TTTGTTTTT
1 TTT-TTTTT
8770634 TTTGTGTTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
14 3 0.07
15 31 0.72
16 8 0.19
17 1 0.02
ACGTcount: A:0.01, C:0.10, G:0.22, T:0.67
Consensus pattern (15 bp):
TTTTTTTTGGGCTGC
Found at i:8770647 original size:30 final size:29
Alignment explanation
Indices: 8770583--8770647 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
8770573 GGGCCTTTTC
* *
8770583 TTTTTGGGCTGCTTTTTTTTGCTTTGGTTT
1 TTTTTGGGCTGATTTTTTTT-CTTTGGTTG
8770613 TTTTTGGGCTGATTTGTTTTT-TTTGTGTTG
1 TTTTTGGGCTGATTT-TTTTTCTTTG-GTTG
8770643 TTTTT
1 TTTTT
8770648 TTTAATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 4 0.13
30 22 0.71
31 5 0.16
ACGTcount: A:0.02, C:0.06, G:0.23, T:0.69
Consensus pattern (29 bp):
TTTTTGGGCTGATTTTTTTTCTTTGGTTG
Found at i:8770751 original size:8 final size:8
Alignment explanation
Indices: 8770740--8770804 Score: 69
Period size: 9 Copynumber: 7.8 Consensus size: 8
8770730 ATTTTTAAAT
*
8770740 TTTTTTTC
1 TTTTCTTC
*
8770748 TTTT-TTT
1 TTTTCTTC
8770755 TTTTCTTC
1 TTTTCTTC
8770763 TTTTCTTC
1 TTTTCTTC
8770771 TTCTTCTTC
1 TT-TTCTTC
8770780 TTCTTCTTC
1 TT-TTCTTC
8770789 TTCTTCTTC
1 TT-TTCTTC
8770798 TTCTTCT
1 TT-TTCT
8770805 CCTCCTACAC
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
7 6 0.11
8 16 0.30
9 31 0.58
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTCTTC
Found at i:8770754 original size:12 final size:13
Alignment explanation
Indices: 8770739--8770793 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 13
8770729 GATTTTTAAA
8770739 TTTTTTTTCTT-T
1 TTTTTTTTCTTCT
8770751 TTTTTTTTCTTCT
1 TTTTTTTTCTTCT
*
8770764 TTTCTTCTTCTTCT
1 TTT-TTTTTCTTCT
*
8770778 TCTTCTTCTTCTTCT
1 T-TT-TTTTTCTTCT
8770793 T
1 T
8770794 CTTCTTCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
12 11 0.28
13 4 0.10
14 10 0.26
15 14 0.36
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTTTTCTTCT
Found at i:8770763 original size:3 final size:3
Alignment explanation
Indices: 8770757--8770804 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
8770747 CTTTTTTTTT
8770757 TTC TTC TT- TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8770804 T
1 T
8770805 CCTCCTACAC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:8770905 original size:10 final size:10
Alignment explanation
Indices: 8770870--8770919 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
8770860 CGCGCGGTAC
8770870 TCTT-TCTTT
1 TCTTCTCTTT
* *
8770879 TCTTCTCCTC
1 TCTTCTCTTT
8770889 T-TTCTCTTT
1 TCTTCTCTTT
8770898 TCTTCTCTTT
1 TCTTCTCTTT
*
8770908 TCTTCTTTTT
1 TCTTCTCTTT
8770918 TC
1 TC
8770920 CTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:8770917 original size:19 final size:19
Alignment explanation
Indices: 8770874--8770916 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
8770864 CGGTACTCTT
8770874 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCTTCTCCTCTTTC
8770893 TCTTTTCTTCT-CT-TTTC
1 TCTTTTCTTCTCCTCTTTC
8770910 TTCTTTT
1 -TCTTTT
8770917 TTCCTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TCTTTTCTTCTCCTCTTTC
Found at i:8771223 original size:30 final size:30
Alignment explanation
Indices: 8771181--8771272 Score: 114
Period size: 30 Copynumber: 3.1 Consensus size: 30
8771171 AATTTAGGAT
* *
8771181 AAAATGGAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
8771211 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
8771241 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
8771271 AA
1 AA
8771273 TGCAATTTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 2 0.04
30 50 0.96
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:8771542 original size:70 final size:67
Alignment explanation
Indices: 8771402--8771590 Score: 202
Period size: 68 Copynumber: 2.7 Consensus size: 67
8771392 GAGTTAAGCC
*
8771402 TTTTTAATTTTTGTTTCAAAATCAA-TCATATTGCGAGAA-TGAGTTGAGCCTCAAGACACGTTG
1 TTTTTAA-TTTT-TTT-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTG
8771465 AGGTA
63 AGGTA
** *
8771470 TTTTTAAATTTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTT-AATTTTTTT--AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTG
*
8771535 AGTTA
63 AGGTA
* * ** * *
8771540 TTTTTAGTTTTGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTTAATTTT-TTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
8771591 TTTAATTTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
67 3 0.03
68 48 0.46
69 21 0.20
70 32 0.31
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.38
Consensus pattern (67 bp):
TTTTTAATTTTTTTAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGG
TA
Found at i:8771802 original size:189 final size:192
Alignment explanation
Indices: 8771282--8772003 Score: 1165
Period size: 190 Copynumber: 3.8 Consensus size: 192
8771272 ATGCAATTTT
**
8771282 TATTTTTAAATTTTT-TTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCA-GC
1 TATTTTTAAATTTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
8771345 CGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGA-GTGAGTTAAGCCTTTTTAA
66 CGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC-TTTTAA
8771409 TTTTTG--TTTCAAAATCAA-TCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTT-GAGG
130 TTTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGA-G
**
8771468 TATTTTTAAATTTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
1 TATTTTTAAATTTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
* *
8771533 TGAGTTATTTTTAGTTT-TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
66 CGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
8771597 TTTTGTTTTT-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAG
131 TTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAG
*
8771658 TATTTTTAAATTTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCATGC
1 TATTTTTAAATTTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
*
8771723 CGAGGTA-TTTTAGTTTATGTTTTAAATTGACTCATGTTGCG-GAGGTGAGTTAAGCCTTTTAA-
66 CGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
*
8771785 TTTTGTTTTTCAAAATCAACTCATATTGCGA-AAATGAGTTGAGCCTCAAGACACATTGG-G
131 TTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAG
*
8771845 TATTTTTAAATTTTTTTTAAAAAAAATCAA-TCTATATTGCGAGAAATGAGTTGAGCCTC-GGGC
1 TATTTTTAAA---TTTTTAAAAAAAATCAACTC-ATATTGCGAGAAGTGAGTTGAGCCTCGGGGC
8771908 ACGCCGAGGTATTTTTAGTTTATGTTTT-AATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTT
62 ACGCCGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTT
8771972 TAATTTTTGTTTTTCAAAAATCAACTCATATT
127 TAATTTTTGTTTTTC-AAAATCAACTCATATT
8772004 TCAAGGGTGG
Statistics
Matches: 505, Mismatches: 13, Indels: 30
0.92 0.02 0.05
Matches are distributed among these distances:
186 15 0.03
187 95 0.19
188 74 0.15
189 97 0.19
190 195 0.39
191 13 0.03
192 16 0.03
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.38
Consensus pattern (192 bp):
TATTTTTAAATTTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
CGAGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAAT
TTTTGTTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGGAG
Found at i:8772063 original size:17 final size:17
Alignment explanation
Indices: 8772041--8772075 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8772031 TGCTGAGGTA
8772041 TTTTCAAT-TAATGTTTT
1 TTTTCAATCT-ATGTTTT
8772058 TTTTCAATCTATGTTTT
1 TTTTCAATCTATGTTTT
8772075 T
1 T
8772076 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.20, C:0.09, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTCAATCTATGTTTT
Found at i:8772422 original size:54 final size:55
Alignment explanation
Indices: 8772338--8772556 Score: 333
Period size: 54 Copynumber: 4.1 Consensus size: 55
8772328 TCAATTTCTA
*
8772338 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
8772393 CTTTT-AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
8772447 C-TTT---TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
8772499 CTTTTGCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
1 CTTTT-CAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
8772554 CTT
1 CTT
8772557 GGCTCACGTG
Statistics
Matches: 152, Mismatches: 6, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
51 12 0.08
52 35 0.23
53 6 0.04
54 48 0.32
55 42 0.28
56 5 0.03
57 4 0.03
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (55 bp):
CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:8772813 original size:13 final size:14
Alignment explanation
Indices: 8772795--8772827 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8772785 TTTAATTTTC
*
8772795 AAAATTTCAAAAA-
1 AAAATTTAAAAAAT
8772808 AAAATTTAAAAAAT
1 AAAATTTAAAAAAT
8772822 AAAATT
1 AAAATT
8772828 GCATTTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATTTAAAAAAT
Found at i:8773206 original size:16 final size:16
Alignment explanation
Indices: 8773179--8773224 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
8773169 TTTCGAAGGA
8773179 AAAAGAAGAAAGAGAAG
1 AAAAG-AGAAAGAGAAG
*
8773196 AAAAGAGAAAGAGGAG
1 AAAAGAGAAAGAGAAG
8773212 AAGAA-AGAAAGAG
1 AA-AAGAGAAAGAG
8773225 TACCGGCGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 20 0.74
17 7 0.26
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (16 bp):
AAAAGAGAAAGAGAAG
Found at i:8773285 original size:3 final size:3
Alignment explanation
Indices: 8773279--8773326 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
8773269 GCTAGACTTT
* * *
8773279 GAA GAA GAA GAA GGAA GAA GAA GGA GAA GAA -AA GAG GAA GAA AAA
1 GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
8773324 GAA
1 GAA
8773327 AGAAAAAAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8773443 original size:16 final size:15
Alignment explanation
Indices: 8773422--8773451 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8773412 GCAGCCCAAG
8773422 AAAAACAACAAAAAAC
1 AAAAACAA-AAAAAAC
8773438 AAAAACAAAAAAAA
1 AAAAACAAAAAAAA
8773452 GAAACAAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAACAAAAAAAAC
Found at i:8774046 original size:16 final size:16
Alignment explanation
Indices: 8773995--8774048 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
8773985 CGTGCTTTTA
8773995 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
8774011 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
8774029 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
8774045 AAAA
1 AAAA
8774049 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:8774059 original size:17 final size:17
Alignment explanation
Indices: 8773984--8774463 Score: 202
Period size: 17 Copynumber: 27.8 Consensus size: 17
8773974 TCAATAATCC
* *
8773984 TCGTGCTTTTAAAAATTC
1 TCGTG-TTTCAAAAATTT
* *
8774002 TCATGTTTCAAAAATCT
1 TCGTGTTTCAAAAATTT
*
8774019 TCGTGTTTTC-AAAATTC
1 TCGTG-TTTCAAAAATTT
*
8774036 TAGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
*
8774053 TCTTGTTTTCAGAAAAAATTT
1 TCGTG-TTTC---AAAAATTT
*
8774074 TCGTGTTTTAAAAATTT
1 TCGTGTTTCAAAAATTT
* * * **
8774091 CCGTATTTTAAAAA-AA
1 TCGTGTTTCAAAAATTT
*
8774107 TCATGTCTTTCAAAAATTT
1 TC--GTGTTTCAAAAATTT
**
8774126 TCGTGTTTTCAAAAAAAATGA
1 TCGTG-TTTC---AAAAATTT
*
8774147 CCGTGTTTCAAAAA-TT
1 TCGTGTTTCAAAAATTT
** *
8774163 TCGTGTTAAAAAAAAATCT
1 TCGTGTT--TCAAAAATTT
*
8774182 TCGTATTTTCAAAAAATTT
1 TCGT-GTTTC-AAAAATTT
*
8774201 TCGTGTTTCAAAAATCT
1 TCGTGTTTCAAAAATTT
8774218 TCGTGTTTTCAAAAA-TT
1 TCGTG-TTTCAAAAATTT
*
8774235 TCGGTGTTTCAAAGATTT
1 TC-GTGTTTCAAAAATTT
*
8774253 TCGTGTTTTCAAAAA--C
1 TCGTG-TTTCAAAAATTT
* ***
8774269 TCGGTGATTTTAAAAAAAAA
1 TC-GTG--TTTCAAAAATTT
8774289 TCGT-TTTCTAAAAATTT
1 TCGTGTTTC-AAAAATTT
*
8774306 CCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
* **
8774323 TTGTGTTTTTAAAATTT
1 TCGTGTTTCAAAAATTT
* *
8774340 TCGTGTTTTAAAAATTC
1 TCGTGTTTCAAAAATTT
* *
8774357 TCGTATTT--TAAA-TT
1 TCGTGTTTCAAAAATTT
* **
8774371 T--T-TTTAAGAAAAAAT
1 TCGTGTTTCA-AAAATTT
* * *
8774386 T-GTCTTTCAAAAAATG
1 TCGTGTTTCAAAAATTT
* *
8774402 TC-TGTTTTAAAAATTC
1 TCGTGTTTCAAAAATTT
* *
8774418 TCGTGTTTCAAAAAATG
1 TCGTGTTTCAAAAATTT
8774435 TCGTGTTT--AAAATTT
1 TCGTGTTTCAAAAATTT
*
8774450 TCGTGTTTTAAAAA
1 TCGTGTTTCAAAAA
8774464 AAAACTTTCA
Statistics
Matches: 351, Mismatches: 73, Indels: 77
0.70 0.15 0.15
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
14 5 0.01
15 18 0.05
16 35 0.10
17 164 0.47
18 72 0.21
19 20 0.06
20 11 0.03
21 22 0.06
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (17 bp):
TCGTGTTTCAAAAATTT
Found at i:8774133 original size:73 final size:74
Alignment explanation
Indices: 8774041--8774236 Score: 215
Period size: 73 Copynumber: 2.7 Consensus size: 74
8774031 AATTCTAGTG
* * **
8774041 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTAAAAATTTCCGTATTTTAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAATCTTCGTGTTTTAAAAATTTCCGTATTAAAAAAAA
8774106 ATCAT-GT-C
65 ATCATCGTAC
*** * *
8774114 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTT-CGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTC-AAAAAAATCTTCGTGTTTTAAAAATTTCCGTATTAAAAAAAA
* *
8774178 ATCTTCGTAT
65 ATCATCGTAC
8774188 TTTCAAAAAATTTTCGTG-TTTC--AAAAATCTTCGTGTTTTCAAAAATTTC
1 TTTC-AAAAATTTTCGTGTTTTCAAAAAAATCTTCGTGTTTT-AAAAATTTC
8774237 GGTGTTTCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
71 13 0.13
72 23 0.22
73 45 0.44
74 9 0.09
75 13 0.13
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.42
Consensus pattern (74 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAATCTTCGTGTTTTAAAAATTTCCGTATTAAAAAAAAA
TCATCGTAC
Found at i:8774447 original size:32 final size:33
Alignment explanation
Indices: 8774390--8774464 Score: 109
Period size: 32 Copynumber: 2.3 Consensus size: 33
8774380 AAAAATTGTC
8774390 TTTCAAAAAATGTCTGTTTTAAAAATTCTCGTG
1 TTTCAAAAAATGTCTGTTTTAAAAATTCTCGTG
*
8774423 TTTCAAAAAATGTC-GTGTTT-AAAATTTTCGTG
1 TTTCAAAAAATGTCTGT-TTTAAAAATTCTCGTG
*
8774455 TTTTAAAAAA
1 TTTCAAAAAA
8774465 AAACTTTCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
32 22 0.56
33 17 0.44
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (33 bp):
TTTCAAAAAATGTCTGTTTTAAAAATTCTCGTG
Found at i:8774465 original size:33 final size:33
Alignment explanation
Indices: 8774394--8774465 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
8774384 ATTGTCTTTC
*
8774394 AAAAAATGTCTGTTTTAAAAATTCTCGTGTTTC
1 AAAAAATGTCTGTTTTAAAAATTCTCGTGTTTA
*
8774427 AAAAAATGTC-GTGTTT-AAAATTTTCGTGTTTTA
1 AAAAAATGTCTGT-TTTAAAAATTCTCGTG-TTTA
8774460 AAAAAA
1 AAAAAA
8774466 AACTTTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 13 0.37
33 22 0.63
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.40
Consensus pattern (33 bp):
AAAAAATGTCTGTTTTAAAAATTCTCGTGTTTA
Found at i:8774467 original size:21 final size:20
Alignment explanation
Indices: 8774443--8774494 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
8774433 TGTCGTGTTT
8774443 AAAATTTTCGTGTTTTAAAAA
1 AAAATTTTCGTGTTTT-AAAA
* * **
8774464 AAAACTTTCAT-TTTTTTAA
1 AAAATTTTCGTGTTTTAAAA
8774483 AAAATTTTCGTG
1 AAAATTTTCGTG
8774495 CTTCAAAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
19 11 0.46
20 4 0.17
21 9 0.38
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (20 bp):
AAAATTTTCGTGTTTTAAAA
Found at i:8774502 original size:17 final size:17
Alignment explanation
Indices: 8774482--8774519 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
8774472 CATTTTTTTA
*
8774482 AAAAATTTTCGTG-CTT
1 AAAAATTCTCGTGTCTT
*
8774498 CAAAATTCTCGTGTCTT
1 AAAAATTCTCGTGTCTT
8774515 AAAAA
1 AAAAA
8774520 AAAGTTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (17 bp):
AAAAATTCTCGTGTCTT
Found at i:8776010 original size:127 final size:128
Alignment explanation
Indices: 8775766--8776010 Score: 275
Period size: 127 Copynumber: 1.9 Consensus size: 128
8775756 TGAAAATTTA
* * * * *
8775766 CTAAAACAAGGGTAATGATTAATGTTTGGGAACTCGAGGAATTGTGTCCTACCGTGCTGGGTTTC
1 CTAAAACAAGGGCAATGATTAATGTTTGGAAACTCGAGAAATCGTGTCCTACCGTGCTGGCTTTC
* * * **
8775831 AATTTTCCGTTTGTCCAAAATAATCAAATATTCCTTTGAAATTTCATTTGTATTTTCTAAATT
66 AATTTTCCGTTGGACCAAAATAAGCAAATATTCCTTTGAAATTTCAAGTGTATTTTCTAAATT
*
8775894 CTAAAACAA-GGCAAT-ATTCAATGTTTGGAAATTCGAGAAATCGTGTCCTACCGTGCTAGGCTT
1 CTAAAACAAGGGCAATGATT-AATGTTTGGAAACTCGAGAAATCGTGTCCTACCGTGCT-GGCTT
** * * *
8775957 T-GGTTTTTCGTTGGACC-AAATAAGCGAATA-TCCTTTTGTAATTTTCAAGTGTAT
64 TCAATTTTCCGTTGGACCAAAATAAGCAAATATTCC-TTTG-AAATTTCAAGTGTAT
8776011 GGGCTTTTAG
Statistics
Matches: 97, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
125 3 0.03
126 18 0.19
127 62 0.64
128 14 0.14
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (128 bp):
CTAAAACAAGGGCAATGATTAATGTTTGGAAACTCGAGAAATCGTGTCCTACCGTGCTGGCTTTC
AATTTTCCGTTGGACCAAAATAAGCAAATATTCCTTTGAAATTTCAAGTGTATTTTCTAAATT
Found at i:8776487 original size:3 final size:3
Alignment explanation
Indices: 8776479--8776510 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8776469 TTAGTTTTGC
8776479 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8776511 ATTTCTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8777717 original size:3 final size:3
Alignment explanation
Indices: 8777709--8777753 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
8777699 TAAACAAACG
*
8777709 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8777754 TATGTACAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8777862 original size:21 final size:20
Alignment explanation
Indices: 8777829--8777879 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
8777819 TGGATGAATA
8777829 AATAATAAAAAAATAATAAT
1 AATAATAAAAAAATAATAAT
* * *
8777849 GATAGATAATAAAATAGTAAT
1 AATA-ATAAAAAAATAATAAT
8777870 AATAATAAAA
1 AATAATAAAA
8777880 GTTTAAATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (20 bp):
AATAATAAAAAAATAATAAT
Found at i:8778115 original size:3 final size:3
Alignment explanation
Indices: 8778107--8778178 Score: 63
Period size: 3 Copynumber: 23.7 Consensus size: 3
8778097 TAAAGTCTAC
* * * * *
8778107 ATA ATA ATA ACA TTA ATA ATA ATA ATA ATA ATA ACA TTA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
8778155 ACA ATA TTA ATA ATC ATGA ATA AT
1 ATA ATA ATA ATA ATA AT-A ATA AT
8778179 CTAAATTTTT
Statistics
Matches: 52, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
3 50 0.96
4 2 0.04
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8778139 original size:24 final size:24
Alignment explanation
Indices: 8778107--8778160 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
8778097 TAAAGTCTAC
8778107 ATAATAATAACATTAATAATAATA
1 ATAATAATAACATTAATAATAATA
*
8778131 ATAATAATAACATTAATGATAATA
1 ATAATAATAACATTAATAATAATA
*
8778155 ACAATA
1 ATAATA
8778161 TTAATAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (24 bp):
ATAATAATAACATTAATAATAATA
Found at i:8778212 original size:18 final size:18
Alignment explanation
Indices: 8778191--8778225 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8778181 AAATTTTTGA
* *
8778191 AAATATATAAATAAATAT
1 AAATAAATAAACAAATAT
8778209 AAATAAATAAACAAATA
1 AAATAAATAAACAAATA
8778226 ATGAAATAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAAATAAACAAATAT
Found at i:8778287 original size:4 final size:4
Alignment explanation
Indices: 8778268--8778322 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
8778258 CAAGCCATTT
* *
8778268 ATAA ATAAA ATGAA ATAA ATAA ATAA AT-A AGAA AT-A ATTA ATAA ATAA
1 ATAA AT-AA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
*
8778316 AAAA ATA
1 ATAA ATA
8778323 GAGACTAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 5 0.12
4 29 0.69
5 8 0.19
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:8778291 original size:18 final size:19
Alignment explanation
Indices: 8778268--8778315 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
8778258 CAAGCCATTT
*
8778268 ATAAATAAA-ATGAAATAA
1 ATAAATAAATAAGAAATAA
8778286 ATAAATAAATAAGAAAT-A
1 ATAAATAAATAAGAAATAA
*
8778304 ATTAATAAATAA
1 ATAAATAAATAA
8778316 AAAAATAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 21 0.78
19 6 0.22
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (19 bp):
ATAAATAAATAAGAAATAA
Found at i:8778295 original size:22 final size:20
Alignment explanation
Indices: 8778268--8778322 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 20
8778258 CAAGCCATTT
8778268 ATAAATAAAATGAAATAAATAA
1 ATAAATAAAA-GAAAT-AATAA
*
8778290 ATAAAT--AAGAAATAATTA
1 ATAAATAAAAGAAATAATAA
8778308 ATAAATAAAA-AAATA
1 ATAAATAAAAGAAATA
8778323 GAGACTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 10 0.33
19 10 0.33
20 4 0.13
22 6 0.20
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (20 bp):
ATAAATAAAAGAAATAATAA
Found at i:8778408 original size:3 final size:3
Alignment explanation
Indices: 8778400--8778434 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8778390 TAAAATGGTT
8778400 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8778435 GAAAAATAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8800638 original size:12 final size:12
Alignment explanation
Indices: 8800621--8800645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8800611 GGTAAAAAAA
8800621 TTTATTTTTTTT
1 TTTATTTTTTTT
8800633 TTTATTTTTTTT
1 TTTATTTTTTTT
8800645 T
1 T
8800646 ATTGTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTATTTTTTTT
Found at i:8800645 original size:15 final size:15
Alignment explanation
Indices: 8800625--8800657 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
8800615 AAAAAATTTA
8800625 TTTTTTTT-TT-TAT
1 TTTTTTTTATTGTAT
8800638 TTTTTTTTATTGTAT
1 TTTTTTTTATTGTAT
8800653 TTTTT
1 TTTTT
8800658 ATATCATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 2 0.11
15 8 0.44
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (15 bp):
TTTTTTTTATTGTAT
Found at i:8804083 original size:21 final size:21
Alignment explanation
Indices: 8804057--8804100 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8804047 TCGGCTGATA
8804057 ATGAGACCACCAATTTTCACC
1 ATGAGACCACCAATTTTCACC
* *
8804078 ATGAGACCCCCAATTTTGACC
1 ATGAGACCACCAATTTTCACC
8804099 AT
1 AT
8804101 ATTCATTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.25
Consensus pattern (21 bp):
ATGAGACCACCAATTTTCACC
Found at i:8812281 original size:310 final size:310
Alignment explanation
Indices: 8811719--8812338 Score: 1222
Period size: 310 Copynumber: 2.0 Consensus size: 310
8811709 CTAACTAAGC
8811719 TTTCAAAATCTTCTCCTTTCCTTTGGCCTTAGATGACTTGGCCACCTCCTTAGCTTCAAATTCAT
1 TTTCAAAATCTTCTCCTTTCCTTTGGCCTTAGATGACTTGGCCACCTCCTTAGCTTCAAATTCAT
8811784 AACCCAACCAAAGAAATCACGTTAGTATAATGTTATTCAACACTTGAAACTCTTAAATCTAATAA
66 AACCCAACCAAAGAAATCACGTTAGTATAATGTTATTCAACACTTGAAACTCTTAAATCTAATAA
*
8811849 TTAAATGTGATTTGGTAAAGCGAGAACCCAACTTTGCTTCCTTGAACACTTAGCTAACCTCTCTC
131 TTAAATGTAATTTGGTAAAGCGAGAACCCAACTTTGCTTCCTTGAACACTTAGCTAACCTCTCTC
*
8811914 AAACTCTAATAAACACTTTTTTCTTATCTCAATGACTCTCTGAACATCTCTAGAAGTTAACATTA
196 AAACTCTAATAAACACTTTTTTCTTATCTCAAGGACTCTCTGAACATCTCTAGAAGTTAACATTA
8811979 ACAACAAAAATTCCTAATATCACTTTCTCTACAATTTCAACCTAAACTCA
261 ACAACAAAAATTCCTAATATCACTTTCTCTACAATTTCAACCTAAACTCA
8812029 TTTCAAAATCTTCTCCTTTCCTTTGGCCTTAGATGACTTGGCCACCTCCTTAGCTTCAAATTCAT
1 TTTCAAAATCTTCTCCTTTCCTTTGGCCTTAGATGACTTGGCCACCTCCTTAGCTTCAAATTCAT
8812094 AACCCAACCAAAGAAATCACGTTAGTATAATGTTATTCAACACTTGAAACTCTTAAATCTAATAA
66 AACCCAACCAAAGAAATCACGTTAGTATAATGTTATTCAACACTTGAAACTCTTAAATCTAATAA
8812159 TTAAATGTAATTTGGTAAAGCGAGAACCCAACTTTGCTTCCTTGAACACTTAGCTAACCTCTCTC
131 TTAAATGTAATTTGGTAAAGCGAGAACCCAACTTTGCTTCCTTGAACACTTAGCTAACCTCTCTC
8812224 AAACTCTAATAAACACTTTTTTCTTATCTCAAGGACTCTCTGAACATCTCTAGAAGTTAACATTA
196 AAACTCTAATAAACACTTTTTTCTTATCTCAAGGACTCTCTGAACATCTCTAGAAGTTAACATTA
8812289 ACAACAAAAATTCCTAATATCACTTTCTCTACAATTTCAACCTAAACTCA
261 ACAACAAAAATTCCTAATATCACTTTCTCTACAATTTCAACCTAAACTCA
8812339 AGAATCCACT
Statistics
Matches: 308, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
310 308 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33
Consensus pattern (310 bp):
TTTCAAAATCTTCTCCTTTCCTTTGGCCTTAGATGACTTGGCCACCTCCTTAGCTTCAAATTCAT
AACCCAACCAAAGAAATCACGTTAGTATAATGTTATTCAACACTTGAAACTCTTAAATCTAATAA
TTAAATGTAATTTGGTAAAGCGAGAACCCAACTTTGCTTCCTTGAACACTTAGCTAACCTCTCTC
AAACTCTAATAAACACTTTTTTCTTATCTCAAGGACTCTCTGAACATCTCTAGAAGTTAACATTA
ACAACAAAAATTCCTAATATCACTTTCTCTACAATTTCAACCTAAACTCA
Found at i:8819235 original size:24 final size:24
Alignment explanation
Indices: 8819208--8819260 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8819198 TTTCTAAAAG
* *
8819208 ATTTGGTATTTATTAGTATAATAT
1 ATTTGGCATTTATTAGCATAATAT
* *
8819232 ATTTAGCATTTATTAGCATAATTT
1 ATTTGGCATTTATTAGCATAATAT
8819256 ATTTG
1 ATTTG
8819261 ACCTATGAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (24 bp):
ATTTGGCATTTATTAGCATAATAT
Found at i:8820682 original size:22 final size:22
Alignment explanation
Indices: 8820657--8820698 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8820647 GAATTTTTAG
* *
8820657 ATTTTTTAAGAATTTTTTTTTC
1 ATTTGTTAAGAATTTCTTTTTC
*
8820679 ATTTGTTAATAATTTCTTTT
1 ATTTGTTAAGAATTTCTTTT
8820699 GTTTTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (22 bp):
ATTTGTTAAGAATTTCTTTTTC
Found at i:8820836 original size:70 final size:70
Alignment explanation
Indices: 8820749--8820886 Score: 276
Period size: 70 Copynumber: 2.0 Consensus size: 70
8820739 TGATAATTTA
8820749 ACTATAGTTAAAGGGCCAAGGTAAATATTAACCCTTGAATTAACGTTTCATATCATTATTTTGTT
1 ACTATAGTTAAAGGGCCAAGGTAAATATTAACCCTTGAATTAACGTTTCATATCATTATTTTGTT
8820814 AAACC
66 AAACC
8820819 ACTATAGTTAAAGGGCCAAGGTAAATATTAACCCTTGAATTAACGTTTCATATCATTATTTTGTT
1 ACTATAGTTAAAGGGCCAAGGTAAATATTAACCCTTGAATTAACGTTTCATATCATTATTTTGTT
8820884 AAA
66 AAA
8820887 GGTTTAATGA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (70 bp):
ACTATAGTTAAAGGGCCAAGGTAAATATTAACCCTTGAATTAACGTTTCATATCATTATTTTGTT
AAACC
Found at i:8822069 original size:31 final size:32
Alignment explanation
Indices: 8822031--8822096 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
8822021 TGCCTAACTA
*
8822031 TAAATAGTTAAGTGACTAAAATAG-AATAAAT
1 TAAATAGTTAAGTGACTAAAACAGAAATAAAT
* *
8822062 TAAATAGTTAAGTGATTAAAACAGAAATACAT
1 TAAATAGTTAAGTGACTAAAACAGAAATAAAT
8822094 TAA
1 TAA
8822097 TACTTGGGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
31 22 0.71
32 9 0.29
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.29
Consensus pattern (32 bp):
TAAATAGTTAAGTGACTAAAACAGAAATAAAT
Found at i:8850471 original size:42 final size:42
Alignment explanation
Indices: 8850390--8850472 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 42
8850380 GTGGTATAAA
* * *
8850390 AGCCAGACGGGCAGGGACATGGGTGTGTACCCAGCCCGTGTG
1 AGCCAGACGGGCAAGGACACGGGTGTGTACCAAGCCCGTGTG
*
8850432 AGCCATACGGGCAAGGACACGGATGTGTGT-CCAAG-CCGTGT
1 AGCCAGACGGGCAAGGACACGG--GTGTGTACCAAGCCCGTGT
8850473 ATCTCACTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 25 0.71
43 4 0.11
44 6 0.17
ACGTcount: A:0.22, C:0.25, G:0.37, T:0.16
Consensus pattern (42 bp):
AGCCAGACGGGCAAGGACACGGGTGTGTACCAAGCCCGTGTG
Found at i:8852843 original size:23 final size:23
Alignment explanation
Indices: 8852794--8852844 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8852784 TTTTTAAATG
* * *
8852794 CAAAATTTTTAGTTTTGGCCTCC
1 CAAAATTTTTAATCTTGGCATCC
* *
8852817 CAAATTTTTTAATCTTGGCATCT
1 CAAAATTTTTAATCTTGGCATCC
8852840 CAAAA
1 CAAAA
8852845 CAAAAAATTC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (23 bp):
CAAAATTTTTAATCTTGGCATCC
Found at i:8867776 original size:74 final size:75
Alignment explanation
Indices: 8867690--8867945 Score: 408
Period size: 75 Copynumber: 3.4 Consensus size: 75
8867680 GTTTCAAAAT
** * *
8867690 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG-TC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCT-
8867754 TTTCAAAA-AA
65 TTTCAAAAGAA
* *
8867764 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTACTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
8867829 TTCAAAAGAA
66 TTCAAAAGAA
* * *
8867839 TCAACCCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
8867904 TTCAAAAGAA
66 TTCAAAAGAA
8867914 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCT
8867946 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
74 64 0.38
75 103 0.62
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (75 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
TTCAAAAGAA
Found at i:8867979 original size:54 final size:57
Alignment explanation
Indices: 8867888--8867999 Score: 176
Period size: 54 Copynumber: 2.0 Consensus size: 57
8867878 CGCTGAGGTA
8867888 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
8867945 TTTT-AATTTTTGTTTTTC-AAAG-ATCAACTCATATTGTGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
8867999 T
1 T
8868000 CGAGTCATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
54 32 0.62
55 4 0.08
56 12 0.23
57 4 0.08
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (57 bp):
TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:8868144 original size:73 final size:73
Alignment explanation
Indices: 8867957--8868179 Score: 220
Period size: 73 Copynumber: 3.1 Consensus size: 73
8867947 TTAATTTTTG
* * ** * * * * * *
8867957 TTTTTCAAAGATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGAGTCATATTGAGGTATTCTC
1 TTTTTCAAAAATCAAATCATATTACGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTC
8868022 AA-TT-TA
66 AATTTCTA
** * ** *
8868028 -TCATCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATT
1 TTTTTC--AAAAATCAAATCATATTACGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGT-ATT
8868092 TT-AATTTCTA
63 TTCAATTTCTA
* * *
8868102 TTTTTCAAAAATCAAATCATATTACGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
1 TTTTTCAAAAATCAAATCATATTACGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTC
8868167 AATTTCTA
66 AATTTCTA
8868175 TTTTT
1 TTTTT
8868180 TCAATTCATG
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
70 3 0.02
72 55 0.43
73 65 0.51
74 2 0.02
75 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (73 bp):
TTTTTCAAAAATCAAATCATATTACGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTC
AATTTCTA
Found at i:8868300 original size:75 final size:75
Alignment explanation
Indices: 8868194--8868384 Score: 319
Period size: 75 Copynumber: 2.5 Consensus size: 75
8868184 TTCATGTTTG
*
8868194 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAA
1 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAA
8868259 TTTCTCCTTT
66 TTTCTCCTTT
* * *
8868269 TCAAGAGAATCAACGCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
1 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAA
*
8868334 TTTCTTCTTT
66 TTTCTCCTTT
* *
8868344 TCAAAAGAATCGACTCATATTGCAAGAGGTGAGTTGAGCCT
1 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
8868385 TTTAATTTCT
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 107 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (75 bp):
TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAA
TTTCTCCTTT
Found at i:8868425 original size:54 final size:57
Alignment explanation
Indices: 8868327--8868434 Score: 170
Period size: 54 Copynumber: 1.9 Consensus size: 57
8868317 CGCTGAGGTA
*
8868327 TTTTCAATTTCTTCTTTTCAAAAGAATCGACTCATATTGCAAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTTCTTTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
8868384 TTTT-AATTTCTGT-TTTTC-AAA-AATCAACTCATATTGCAAGAGGTGAGTTGA
1 TTTTCAATTTCT-TCTTTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTGA
8868435 ACCTCGGGTC
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
54 29 0.59
55 3 0.06
56 12 0.24
57 5 0.10
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (57 bp):
TTTTCAATTTCTTCTTTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
Found at i:8868513 original size:87 final size:87
Alignment explanation
Indices: 8868396--8868934 Score: 610
Period size: 87 Copynumber: 6.5 Consensus size: 87
8868386 TTAATTTCTG
* * * *
8868396 TTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACCTCGGGTCACATATCGAGGCATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
8868461 TCAAAATCTGTTTTTCAAATTA
66 TCAAAATCTGTTTTTCAAATTA
* * *
8868483 TTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTCGAGCCTCGGATCACATGTCGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
8868548 TCAAAATCTGTTTTTCAAATTA
66 TCAAAATCTGTTTTTCAAATTA
* * * * *
8868570 TTTTTCAAAAATTAATTCATATTGCAAGAGGTGAGTCGAGCCTCGGATCA-ATGTCGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
*
8868634 TCAAAATCAGTTTTTCAAATTA
66 TCAAAATCTGTTTTTCAAATTA
* * *
8868656 TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG-CTGAGGTGTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTC-GAGGTATT
** *
8868720 TTCAACTTCTG-TTTTCCAA--A
65 TTCAAAATCTGTTTTTCAAATTA
* * *
8868740 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACG-CTGAGGTAAT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTC-GAGGTATT
8868796 TTC--AA------TTTC---TGT-
65 TTCAAAATCTGTTTTTCAAAT-TA
*
8868808 -TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
* *
8868872 TCAAAATCTGCTTTTCAAAGTA
66 TCAAAATCTGTTTTTCAAATTA
** *
8868894 AGTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
8868935 TATTTTCAAT
Statistics
Matches: 391, Mismatches: 35, Indels: 52
0.82 0.07 0.11
Matches are distributed among these distances:
69 4 0.01
73 40 0.10
75 14 0.04
76 17 0.04
77 2 0.01
78 39 0.10
83 4 0.01
84 1 0.00
85 1 0.00
86 87 0.22
87 182 0.47
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (87 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
TCAAAATCTGTTTTTCAAATTA
Found at i:8868768 original size:78 final size:78
Alignment explanation
Indices: 8868662--8868934 Score: 308
Period size: 73 Copynumber: 3.4 Consensus size: 78
8868652 ATTATTTTTC
* *
8868662 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAACT
1 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCAAAT
8868727 TCTGTTTTCCAAA
66 TCTGTTTTCCAAA
* * * *
8868740 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTCAATT
1 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCAAAT
8868803 TCTGTTTGT-C---
66 TCTGTTT-TCCAAA
* *
8868813 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAA
1 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT-GAGGTATTTTCAAA
* *
8868877 ATCTGCTTTTCAAAGTAA
65 TTCTG-TTTTC-CA--AA
8868895 GTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -----AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
8868935 TATTTTCAAT
Statistics
Matches: 166, Mismatches: 12, Indels: 25
0.82 0.06 0.12
Matches are distributed among these distances:
73 40 0.24
74 1 0.01
75 21 0.13
76 30 0.18
77 1 0.01
78 39 0.23
87 34 0.20
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (78 bp):
AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCAAAT
TCTGTTTTCCAAA
Found at i:8869662 original size:35 final size:35
Alignment explanation
Indices: 8869593--8869662 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
8869583 CACTTGCCTC
*
8869593 TCCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCCACTCTCCCATGCTGTCTGCCACCACCACCA
* *
8869628 TCCCCACTCTCCCATGCTGTCTTCCACTACCACCA
1 TCCCCACTCTCCCATGCTGTCTGCCACCACCACCA
8869663 CCACTCCTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.17, C:0.51, G:0.09, T:0.23
Consensus pattern (35 bp):
TCCCCACTCTCCCATGCTGTCTGCCACCACCACCA
Found at i:8872023 original size:25 final size:25
Alignment explanation
Indices: 8871972--8872023 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
8871962 ACTTTAAAAG
* * *
8871972 TGAATTTTATGCTTTGGGTTTTTGA
1 TGAATTTTAGGCTTTGGGTATTAGA
8871997 TGAATTTTAGGCTTTGGGTATTAGA
1 TGAATTTTAGGCTTTGGGTATTAGA
8872022 TG
1 TG
8872024 TGTGAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.19, C:0.04, G:0.27, T:0.50
Consensus pattern (25 bp):
TGAATTTTAGGCTTTGGGTATTAGA
Found at i:8874638 original size:34 final size:34
Alignment explanation
Indices: 8874595--8874660 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
8874585 GATTGTAAGT
*
8874595 ATTTTCTATTAAAATCTATACACTTGGATATACG
1 ATTTTCTATTAAAATCTATAAACTTGGATATACG
*
8874629 ATTTTCTATTAAAATCTGTAAACTTGGATATA
1 ATTTTCTATTAAAATCTATAAACTTGGATATA
8874661 TGCTGAGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.42
Consensus pattern (34 bp):
ATTTTCTATTAAAATCTATAAACTTGGATATACG
Found at i:8883066 original size:17 final size:17
Alignment explanation
Indices: 8883025--8883075 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
8883015 TGAAAGTAAT
8883025 TTTTTTTTTAATTTTCA
1 TTTTTTTTTAATTTTCA
* * *
8883042 TATATTTTTCATTTTCA
1 TTTTTTTTTAATTTTCA
*
8883059 TTTTTTTTTAAATTTCA
1 TTTTTTTTTAATTTTCA
8883076 ACCAAATACG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTTTTAATTTTCA
Found at i:8891717 original size:24 final size:24
Alignment explanation
Indices: 8891635--8891768 Score: 126
Period size: 25 Copynumber: 5.5 Consensus size: 24
8891625 TTAGAGGTCC
* *
8891635 GCACACATAGTGCCACGT-TTCCCTC
1 GCACACATAGTGCCACGTAAT--CTT
** *
8891660 GCACACATAGTGCCACGTTTTCCTC
1 GCACACATAGTGCCACGTAAT-CTT
* *
8891685 GCACACATAGTGCTATGTAATCTT
1 GCACACATAGTGCCACGTAATCTT
* *
8891709 GCACACATAGTGCCACGTAGTTTTT
1 GCACACATAGTGCCACGTA-ATCTT
* *
8891734 GCACACATAGTGCCACATAACCTT
1 GCACACATAGTGCCACGTAATCTT
8891758 GCACACATAGT
1 GCACACATAGT
8891769 TCTGAAATTT
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
24 32 0.34
25 60 0.64
26 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (24 bp):
GCACACATAGTGCCACGTAATCTT
Found at i:8891722 original size:49 final size:48
Alignment explanation
Indices: 8891634--8891768 Score: 146
Period size: 49 Copynumber: 2.8 Consensus size: 48
8891624 TTTAGAGGTC
* ** *
8891634 CGCACACATAGTGCCACGTTTCCCTCGCACACATAGTGCCACGT-TTTCCT
1 CGCACACATAGTGCCAC-ATAACCTTGCACACATAGTGCCACGTATTT--T
* ** *
8891684 CGCACACATAGTGCTATGTAATCTTGCACACATAGTGCCACGTAGTTTT
1 CGCACACATAGTGCCACATAACCTTGCACACATAGTGCCACGTA-TTTT
*
8891733 TGCACACATAGTGCCACATAACCTTGCACACATAGT
1 CGCACACATAGTGCCACATAACCTTGCACACATAGT
8891769 TCTGAAATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
49 53 0.75
50 15 0.21
51 3 0.04
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (48 bp):
CGCACACATAGTGCCACATAACCTTGCACACATAGTGCCACGTATTTT
Found at i:8892939 original size:7 final size:7
Alignment explanation
Indices: 8892929--8892956 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8892919 TTATTTAGTA
8892929 TTCATGT
1 TTCATGT
8892936 TTCATGT
1 TTCATGT
8892943 TTCATGT
1 TTCATGT
8892950 TTCATGT
1 TTCATGT
8892957 AACATCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (7 bp):
TTCATGT
Found at i:8895227 original size:17 final size:17
Alignment explanation
Indices: 8895173--8895228 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 17
8895163 TGAACACTTA
8895173 ATTTTTTT-TTCA-TTT
1 ATTTTTTTATTCATTTT
* *
8895188 CTTATTTTATTCATCTTAAT
1 ATTTTTTTATTCAT-TT--T
8895208 ATTTTTTTATTCATTTT
1 ATTTTTTTATTCATTTT
8895225 ATTT
1 ATTT
8895229 ATGATATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.19
16 4 0.12
17 5 0.16
18 2 0.06
19 2 0.06
20 13 0.41
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTTTTTATTCATTTT
Found at i:8901776 original size:28 final size:28
Alignment explanation
Indices: 8901717--8901774 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
8901707 TTAAATCTGG
*
8901717 CCAACTTTAAAAAATTACAGTCACGCCC
1 CCAACTTTAAAAAATTACAGTAACGCCC
* *
8901745 CCAACTTTGAAAAAATTATAGTAATGCCC
1 CCAACTTT-AAAAAATTACAGTAACGCCC
8901774 C
1 C
8901775 AAATGTTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.24
Consensus pattern (28 bp):
CCAACTTTAAAAAATTACAGTAACGCCC
Found at i:8905920 original size:50 final size:52
Alignment explanation
Indices: 8905810--8905928 Score: 170
Period size: 50 Copynumber: 2.3 Consensus size: 52
8905800 ATGAACAAAT
* * * * *
8905810 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGACGCAAACTTTAACTAAAATGA
*
8905862 GAGTTACATAATGCATGTCATAATTT-ATGACGCAAAC-TTAACTAAAATGA
1 GAGTTACATAATGCATGACATAATTTAATGACGCAAACTTTAACTAAAATGA
8905912 GAGTTACATAATGCATG
1 GAGTTACATAATGCATG
8905929 GCTTTATTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 28 0.46
51 10 0.16
52 23 0.38
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGACGCAAACTTTAACTAAAATGA
Found at i:8907049 original size:32 final size:32
Alignment explanation
Indices: 8907013--8907077 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
8907003 TGTATGCATT
*
8907013 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGACGGGCA
8907045 TTAGCATTTTAATAGTTAATGGATGACGGGCA
1 TTAGCATTTTAATAGTTAATGGATGACGGGCA
8907077 T
1 T
8907078 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.37
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGACGGGCA
Found at i:8908572 original size:26 final size:26
Alignment explanation
Indices: 8908543--8908592 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
8908533 TACAGTTTTA
8908543 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
8908569 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
8908593 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:8910203 original size:12 final size:12
Alignment explanation
Indices: 8910183--8910213 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8910173 ACTCAGGGAA
8910183 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
8910195 GATGCCGTGGTC
1 GAGGCCGTGGTC
8910207 GAGGCCG
1 GAGGCCG
8910214 AGGTTGTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.48, T:0.16
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:8915049 original size:32 final size:32
Alignment explanation
Indices: 8915013--8915077 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
8915003 TGTATGCATT
8915013 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
8915045 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
8915077 T
1 T
8915078 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:8916586 original size:26 final size:26
Alignment explanation
Indices: 8916557--8916609 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8916547 TTTACAGTTT
*
8916557 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
8916583 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
8916609 T
1 T
8916610 GTATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:8918083 original size:25 final size:25
Alignment explanation
Indices: 8918055--8918108 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
8918045 ATTTTAAAAT
*
8918055 TTTTTGTTAAACACATTTTT-A-GTTA
1 TTTTAGTT-AACA-ATTTTTAAGGTTA
*
8918080 TTTTAGTTTACAATTTTTAAGGTTA
1 TTTTAGTTAACAATTTTTAAGGTTA
8918105 TTTT
1 TTTT
8918109 CTACAGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 6 0.24
24 4 0.16
25 15 0.60
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (25 bp):
TTTTAGTTAACAATTTTTAAGGTTA
Found at i:8923405 original size:26 final size:24
Alignment explanation
Indices: 8923375--8923424 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
8923365 TTTAATATTA
8923375 ATTATAAAATAGTATATATTATTTTT
1 ATTATAAAATA-TAT-TATTATTTTT
**
8923401 ATTATCCAATATATTATTATTTTT
1 ATTATAAAATATATTATTATTTTT
8923425 TAAAAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 3 0.14
26 9 0.41
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTATAAAATATATTATTATTTTT
Found at i:8923463 original size:13 final size:14
Alignment explanation
Indices: 8923434--8923466 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8923424 TTAAAAAAAG
8923434 ATTTGTTTATCATAT
1 ATTT-TTTATCATAT
8923449 ATTTTTTAT-ATAT
1 ATTTTTTATCATAT
8923462 ATTTT
1 ATTTT
8923467 ATTTCGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 5 0.28
15 4 0.22
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (14 bp):
ATTTTTTATCATAT
Found at i:8923538 original size:19 final size:19
Alignment explanation
Indices: 8923510--8923556 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
8923500 ATGTATTTTC
8923510 ATTATA-TATATATTATCT
1 ATTATACTATATATTATCT
* *
8923528 ATTTTACTATATTTTATCT
1 ATTATACTATATATTATCT
8923547 ATTATACTAT
1 ATTATACTAT
8923557 TATACATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTATACTATATATTATCT
Found at i:8923594 original size:13 final size:13
Alignment explanation
Indices: 8923569--8923660 Score: 61
Period size: 13 Copynumber: 7.2 Consensus size: 13
8923559 TACATTTTTA
8923569 ATTT-TTATCATAT
1 ATTTATTAT-ATAT
8923582 ATTTATTATATAT
1 ATTTATTATATAT
8923595 A-TTATT-TATAT
1 ATTTATTATATAT
*
8923606 -TTATATTATATGT
1 ATT-TATTATATAT
* * *
8923619 TTTTAGTACATATT
1 ATTTATTATATA-T
8923633 ATTT-TTATATATT
1 ATTTATTATATA-T
*
8923646 ATATATTATAT-T
1 ATTTATTATATAT
8923658 ATT
1 ATT
8923661 CATATTATTA
Statistics
Matches: 63, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
11 6 0.10
12 12 0.19
13 29 0.46
14 16 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (13 bp):
ATTTATTATATAT
Found at i:8923610 original size:15 final size:15
Alignment explanation
Indices: 8923581--8923666 Score: 52
Period size: 15 Copynumber: 5.7 Consensus size: 15
8923571 TTTTATCATA
*
8923581 TATTTATTATATATAT
1 TATTTA-TATTTATAT
8923597 TATTTATATTTATAT
1 TATTTATATTTATAT
* * *
8923612 TATATGTTTTTAGTA-
1 TATTTATATTTA-TAT
* *
8923627 CATATTATTTTTATA-
1 TAT-TTATATTTATAT
8923642 TA-TTATATATTATAT
1 TATTTATAT-TTATAT
*
8923657 TATTCATATT
1 TATTTATATT
8923667 ATTATACATT
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
13 5 0.09
14 5 0.09
15 25 0.45
16 20 0.36
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTATATTTATAT
Found at i:8923719 original size:21 final size:21
Alignment explanation
Indices: 8923693--8923737 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8923683 AAAAATTTAG
*
8923693 TATATACT-ATGTATTTTCCTA
1 TATATACTAAT-TATTTTACTA
*
8923714 TATATATTAATTATTTTACTA
1 TATATACTAATTATTTTACTA
8923735 TAT
1 TAT
8923738 TTTTATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (21 bp):
TATATACTAATTATTTTACTA
Found at i:8923802 original size:14 final size:14
Alignment explanation
Indices: 8923783--8923817 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8923773 ATATATTCTT
8923783 CATATATCGTATTA
1 CATATATCGTATTA
**
8923797 CATATATTTTATTA
1 CATATATCGTATTA
8923811 CATATAT
1 CATATAT
8923818 TTTTATTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (14 bp):
CATATATCGTATTA
Found at i:8923830 original size:14 final size:16
Alignment explanation
Indices: 8923798--8923856 Score: 52
Period size: 15 Copynumber: 3.8 Consensus size: 16
8923788 ATCGTATTAC
8923798 ATATATTTTATTACAT
1 ATATATTTTATTACAT
*
8923814 ATAT-TTTTATTGC-T
1 ATATATTTTATTACAT
*
8923828 ATATGATTTATATTA-TT
1 ATAT-ATTT-TATTACAT
*
8923845 ACATATTTTATT
1 ATATATTTTATT
8923857 TGTAAATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.14
15 12 0.33
16 11 0.31
17 8 0.22
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (16 bp):
ATATATTTTATTACAT
Found at i:8923831 original size:16 final size:15
Alignment explanation
Indices: 8923792--8923824 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
8923782 TCATATATCG
8923792 TATTACATATA-TTT
1 TATTACATATATTTT
8923806 TATTACATATATTTT
1 TATTACATATATTTT
8923821 TATT
1 TATT
8923825 GCTATATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTACATATATTTT
Found at i:8927907 original size:37 final size:37
Alignment explanation
Indices: 8927852--8927926 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
8927842 AGAGAGTAAG
8927852 AAAGAGGAAATCTAGAAGCAACACATCCCTACGGTAC
1 AAAGAGGAAATCTAGAAGCAACACATCCCTACGGTAC
*
8927889 AAAGAGGAAATCTGGAAGCAACACATCCCTACGGTAC
1 AAAGAGGAAATCTAGAAGCAACACATCCCTACGGTAC
8927926 A
1 A
8927927 CACGCTAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.13
Consensus pattern (37 bp):
AAAGAGGAAATCTAGAAGCAACACATCCCTACGGTAC
Found at i:8935907 original size:27 final size:27
Alignment explanation
Indices: 8935877--8935928 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
8935867 CCTAATTTGA
8935877 TAAAATAACT-ATTATACCCCTATGAGG
1 TAAAATAACTGA-TATACCCCTATGAGG
* *
8935904 TAAAATGACTGATATGCCCCTATGA
1 TAAAATAACTGATATACCCCTATGA
8935929 TATGTATGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (27 bp):
TAAAATAACTGATATACCCCTATGAGG
Found at i:8936255 original size:34 final size:34
Alignment explanation
Indices: 8936180--8936258 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 34
8936170 CTAATTGCAT
8936180 CACTGATACTGTTACTGAATTAGGCTAAGGCCCA
1 CACTGATACTGTTACTGAATTAGGCTAAGGCCCA
* * *
8936214 CAATGATATTGTTACTGTAA-TGGGCTAAGGCCCTA
1 CACTGATACTGTTACTG-AATTAGGCTAAGGCCC-A
8936249 -ACTGATACTG
1 CACTGATACTG
8936259 AACTGCTACT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
34 35 0.92
35 3 0.08
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (34 bp):
CACTGATACTGTTACTGAATTAGGCTAAGGCCCA
Found at i:8940815 original size:18 final size:18
Alignment explanation
Indices: 8940772--8940821 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
8940762 TACGTATACA
*
8940772 GTATTGTTCAC--CTATG
1 GTATTGTTCACGTATATG
* *
8940788 GTACTATTCACGTATATG
1 GTATTGTTCACGTATATG
*
8940806 GTATTGTTCATGTATA
1 GTATTGTTCACGTATA
8940822 CAGTAGTTGG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 9 0.35
18 17 0.65
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (18 bp):
GTATTGTTCACGTATATG
Found at i:8947136 original size:26 final size:26
Alignment explanation
Indices: 8947100--8947153 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
8947090 AGATTATCTC
8947100 CTTCAACAAAAAGTCAAATACAAGGT
1 CTTCAACAAAAAGTCAAATACAAGGT
*
8947126 CTTCAATAAAAAGTCAAATACAAGGT
1 CTTCAACAAAAAGTCAAATACAAGGT
8947152 CT
1 CT
8947154 GTCATGGGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (26 bp):
CTTCAACAAAAAGTCAAATACAAGGT
Found at i:8950676 original size:20 final size:20
Alignment explanation
Indices: 8950651--8950691 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8950641 TGTTTCGAGT
8950651 GTAGAACTAGGAATTTATAG
1 GTAGAACTAGGAATTTATAG
8950671 GTAGAACTAGGAATTTATAG
1 GTAGAACTAGGAATTTATAG
8950691 G
1 G
8950692 ATTTCTAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.29
Consensus pattern (20 bp):
GTAGAACTAGGAATTTATAG
Found at i:8953888 original size:13 final size:13
Alignment explanation
Indices: 8953870--8953899 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
8953860 TTTGAAGGGT
8953870 ACACGGGCTAGAC
1 ACACGGGCTAGAC
8953883 ACACGGGCTAGAC
1 ACACGGGCTAGAC
8953896 ACAC
1 ACAC
8953900 AGGCGTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.33, G:0.27, T:0.07
Consensus pattern (13 bp):
ACACGGGCTAGAC
Found at i:8956656 original size:17 final size:17
Alignment explanation
Indices: 8956634--8956677 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
8956624 TCAAAACATA
8956634 TCAATAAAGACCATAAG
1 TCAATAAAGACCATAAG
8956651 TCAATAAAGACCATAAG
1 TCAATAAAGACCATAAG
*
8956668 TCAATCAAGA
1 TCAATAAAGA
8956678 TTTACTCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.52, C:0.18, G:0.11, T:0.18
Consensus pattern (17 bp):
TCAATAAAGACCATAAG
Found at i:8976357 original size:36 final size:36
Alignment explanation
Indices: 8976317--8976390 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
8976307 TTACAACAAG
8976317 AATATTCGACACGTTGCATTGAGGATTGGGATCCTC
1 AATATTCGACACGTTGCATTGAGGATTGGGATCCTC
*
8976353 AATATTTGACACGTTGCATTGAGGATTGGGATCCTC
1 AATATTCGACACGTTGCATTGAGGATTGGGATCCTC
8976389 AA
1 AA
8976391 GAAGTCCCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (36 bp):
AATATTCGACACGTTGCATTGAGGATTGGGATCCTC
Found at i:8977990 original size:19 final size:18
Alignment explanation
Indices: 8977968--8978007 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8977958 TCATTGTATT
8977968 TGAC-AAGAAACATTGAAAA
1 TGACAAAGAAA-A-TGAAAA
8977987 TGACAAAGAAAATGAAAA
1 TGACAAAGAAAATGAAAA
8978005 TGA
1 TGA
8978008 AATAAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.45
19 5 0.25
20 6 0.30
ACGTcount: A:0.60, C:0.07, G:0.17, T:0.15
Consensus pattern (18 bp):
TGACAAAGAAAATGAAAA
Found at i:8979291 original size:17 final size:19
Alignment explanation
Indices: 8979255--8979296 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
8979245 GTGGGTGAAT
*
8979255 AAATATATTTTATATTAAA
1 AAATATATTTTATATCAAA
8979274 AAATATA-TTTATA-CAAA
1 AAATATATTTTATATCAAA
8979291 AAATAT
1 AAATAT
8979297 GTAAAAGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 6 0.27
19 7 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAATATATTTTATATCAAA
Found at i:8979675 original size:22 final size:20
Alignment explanation
Indices: 8979633--8979675 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
8979623 CAAAATCTGG
* *
8979633 TTATATATATATATGTTTTT
1 TTATATATATATATATGTTT
8979653 TTATATATTATAATATATGTTT
1 TTATATA-TAT-ATATATGTTT
8979675 T
1 T
8979676 CAAATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 3 0.16
22 9 0.47
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
TTATATATATATATATGTTT
Found at i:8981629 original size:12 final size:12
Alignment explanation
Indices: 8981612--8981637 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8981602 AAAACAAGGC
8981612 TTTAGCGGCGTT
1 TTTAGCGGCGTT
8981624 TTTAGCGGCGTT
1 TTTAGCGGCGTT
8981636 TT
1 TT
8981638 ATCAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:8981807 original size:41 final size:41
Alignment explanation
Indices: 8981669--8981982 Score: 319
Period size: 41 Copynumber: 7.9 Consensus size: 41
8981659 TGTAAAACAT
* ** * **
8981669 AGAGCAATAGCGGCATTTTTGGTAAAACGCCAC-AAAAAAT
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* ** *
8981709 AGAGCAATAGCGGCTTTTTTGTTAAAACGCCGCTAAAAA-C
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
**
8981749 AGAGCAACAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
*
8981790 AGAGCATTAGCGACGCTTTTGGTAAAACGCCGCTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* * * *
8981831 AGAGTATTCGCGGCACTTTTGGT--AA-------AAAAACT
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* * *
8981863 AGAGCATTTGCGGCGCTTTTGGTAAAATGCTGCTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* *
8981904 AGAGCATTAGCGGCGCTTTTAGTAAAACGCCGCTAAAAATC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* *
8981945 -GAAGCATTAGCGGCGCTTTCGGTAAAATGCCGCTAAAA
1 AG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
8981983 GTCATATAAC
Statistics
Matches: 234, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
32 26 0.11
34 2 0.01
39 2 0.01
40 66 0.28
41 138 0.59
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (41 bp):
AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
Done.