Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 36 of 253
Found at i:9261222 original size:110 final size:109
Alignment explanation
Indices: 9261035--9261332 Score: 388
Period size: 109 Copynumber: 2.7 Consensus size: 109
9261025 CTTTTAGGTG
* * * * *
9261035 CTGGCCTTGTAATGGCTGGCACCAAGTACAAAAAAAAATT--AATTTTTTTTAAATGTTAGCCTT
1 CTGGCCTTCTAATGGCCGGCACCAGGTAC-AAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTT
* *
9261098 CTAATGGTCAGCACCAGACTACCAGTATTTA-AAAAAAAATTTAGTT
65 CTAATGGCCAGCACCA-ACTACCAATATTTACAAAAAAAATTTA-TT
* *
9261144 CTGGCCTTCTAATGGCCGGCACCAGGTACGAAAAAAATTCAAATTTTTTTTAGCTGTTGGCCTTC
1 CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
* *
9261209 TAATGGCCTGCACCAAGTACCAATATTTACAAAAAAAATTTATT
66 TAATGGCCAGCACCAACTACCAATATTTACAAAAAAAATTTATT
* * *
9261253 CTGGCCTTCTAATGGCCGGCACCTGGTACAAAAAAAATTCAAA-TTTTTTTAGGTGTTGACCTTC
1 CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
* * *
9261317 TACTTGCCGGCACCAA
66 TAATGGCCAGCACCAA
9261333 GTATGAAAAA
Statistics
Matches: 168, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
108 41 0.24
109 81 0.48
110 46 0.27
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (109 bp):
CTGGCCTTCTAATGGCCGGCACCAGGTACAAAAAAAATTCAAATTTTTTTTAGATGTTGGCCTTC
TAATGGCCAGCACCAACTACCAATATTTACAAAAAAAATTTATT
Found at i:9261435 original size:55 final size:56
Alignment explanation
Indices: 9261348--9261473 Score: 209
Period size: 57 Copynumber: 2.2 Consensus size: 56
9261338 AAAAAAAAAT
9261348 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAA-TTTTTTTCGTACCTAGTGCCGG
1 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAACTTTTTTTCGTACCTAGTGCCGG
* * *
9261403 CCTTTAGAAGGCCAGCACCTAAAAAAAATTGAACTTTTTTTTCGTACCTGGTGTCGG
1 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAAC-TTTTTTTCGTACCTAGTGCCGG
9261460 CCATTAGAAGGCCA
1 CCATTAGAAGGCCA
9261474 AAACCATTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
55 32 0.49
57 33 0.51
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (56 bp):
CCATTAGAAGGCCAGCACCTAAAAAAAATTGAACTTTTTTTCGTACCTAGTGCCGG
Found at i:9261682 original size:161 final size:162
Alignment explanation
Indices: 9261348--9261687 Score: 391
Period size: 161 Copynumber: 2.1 Consensus size: 162
9261338 AAAAAAAAAT
* *
9261348 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAATTTTTTTCGTACCTAGTGCCGGCCTTTAGAAG
1 CCATTAGAAGGCCAGCACCTAAAAAAAATTGAATTTTTTTCGTACCTAGTGCCAGCCATTAGAAG
* ** * * * *
9261413 GCCAGCACCTAAAAAAAATTGAACTTTTTTTTCGTACCTGGTGTCGGCCATTAGAAGGCCAAAAC
66 GCCAGAACCTAAAAAAAA-T-AACTTAATATTCGTACCTAGTGCCGACCATTAGAAGGCCAAAAC
* *
9261478 CATTTTTTTTTAAATACTGGTAGTCTGGTGTCAA
129 CAATTTTTTTTAAATACTGGTAGTCTAGTGTCAA
* * * *
9261512 CCATTAGAAGGCCAGCACCTAAAAAAATTTGATTTTTTTTTCGTATCTGGTGCCAGCCATTAGAA
1 CCATTAGAAGGCCAGCACCTAAAAAAAATTGA-ATTTTTTTCGTACCTAGTGCCAGCCATTAGAA
* * * * * *
9261577 GGTCATAACC-AAAAAAAA-AA-TTAAATATTGGTACCTAGTGCCGACTATTAGAAGGCTAGAAC
65 GGCCAGAACCTAAAAAAAATAACTT-AATATTCGTACCTAGTGCCGACCATTAGAAGGCCAAAAC
* *
9261639 CAATTTTTTTTAAATATTGGTAGTCTAGTG-CAGG
129 CAATTTTTTTTAAATACTGGTAGTCTAGTGTCA-A
*
9261673 CCATTAGAAGACCAG
1 CCATTAGAAGGCCAG
9261688 AACAAAAAAA
Statistics
Matches: 149, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
160 4 0.03
161 72 0.48
164 39 0.26
165 34 0.23
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (162 bp):
CCATTAGAAGGCCAGCACCTAAAAAAAATTGAATTTTTTTCGTACCTAGTGCCAGCCATTAGAAG
GCCAGAACCTAAAAAAAATAACTTAATATTCGTACCTAGTGCCGACCATTAGAAGGCCAAAACCA
ATTTTTTTTAAATACTGGTAGTCTAGTGTCAA
Found at i:9262929 original size:39 final size:38
Alignment explanation
Indices: 9262865--9262939 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 38
9262855 ATTAATTAAC
* * *
9262865 TTTTTAAATTTTTAAAAATTCAAAAAATTATAAAAATA
1 TTTTTAAATATTTAAAAATTAAAAAAAGTATAAAAATA
9262903 TTTTTAAA-ATTTAAAATTATTAAAAAAAGTATAAAAA
1 TTTTTAAATATTTAAAA--ATTAAAAAAAGTATAAAAA
9262940 CTATATAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 7 0.22
38 8 0.25
39 17 0.53
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (38 bp):
TTTTTAAATATTTAAAAATTAAAAAAAGTATAAAAATA
Found at i:9262930 original size:30 final size:30
Alignment explanation
Indices: 9262872--9262930 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
9262862 AACTTTTTAA
*
9262872 ATTTTTAAAAATTCAAAAAATTATAAAAAT
1 ATTTTTAAAAATTCAAAAAATTAAAAAAAT
* *
9262902 ATTTTT-AAAATTTAAAATTATTAAAAAAA
1 ATTTTTAAAAATTCAAAA-AATTAAAAAAA
9262931 GTATAAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (30 bp):
ATTTTTAAAAATTCAAAAAATTAAAAAAAT
Found at i:9265306 original size:23 final size:23
Alignment explanation
Indices: 9265276--9265321 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9265266 CGCCCGTATA
9265276 GATCCACACGACCTTGGTGTCTG
1 GATCCACACGACCTTGGTGTCTG
9265299 GATCCACACGACCTTGGTGTCTG
1 GATCCACACGACCTTGGTGTCTG
9265322 ACCTGTGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.30, G:0.26, T:0.26
Consensus pattern (23 bp):
GATCCACACGACCTTGGTGTCTG
Found at i:9281294 original size:20 final size:20
Alignment explanation
Indices: 9281266--9281306 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9281256 AGTTAGTAGA
*
9281266 AATTGGGTTAGTAAACTAAG
1 AATTAGGTTAGTAAACTAAG
*
9281286 AATTAGGTTAGTGAACTAAG
1 AATTAGGTTAGTAAACTAAG
9281306 A
1 A
9281307 GTTGTAACGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (20 bp):
AATTAGGTTAGTAAACTAAG
Found at i:9282462 original size:41 final size:41
Alignment explanation
Indices: 9282417--9282513 Score: 104
Period size: 41 Copynumber: 2.4 Consensus size: 41
9282407 TCGTGTAACT
* * * *
9282417 GGCCATATGGCAGACCACGTGGGTCACACGACCGTGTGGTA
1 GGCCATATGACAGACCACGTAGGTCACACGACCGTATGGCA
* ***
9282458 GGCCATGTGACAGACTGTGTAGGTCACACGACCGTATGGCA
1 GGCCATATGACAGACCACGTAGGTCACACGACCGTATGGCA
* *
9282499 GGCCGTGTGACAGAC
1 GGCCATATGACAGAC
9282514 TGTGCGGATT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.23, C:0.26, G:0.34, T:0.18
Consensus pattern (41 bp):
GGCCATATGACAGACCACGTAGGTCACACGACCGTATGGCA
Found at i:9282514 original size:41 final size:41
Alignment explanation
Indices: 9282438--9282693 Score: 158
Period size: 41 Copynumber: 6.2 Consensus size: 41
9282428 AGACCACGTG
* *
9282438 GGTCACACGACCGTGTGGTAGGCCATGTGACAGACTGTGTA
1 GGTCACACGACCGTATGGTAGGCCGTGTGACAGACTGTGTA
* *
9282479 GGTCACACGACCGTATGGCAGGCCGTGTGACAGACTGTG-C
1 GGTCACACGACCGTATGGTAGGCCGTGTGACAGACTGTGTA
* * ** * * *
9282519 GGATTACACGACCATATGGTAGGATGCGTGGCAGACTGTGTG
1 GG-TCACACGACCGTATGGTAGGCCGTGTGACAGACTGTGTA
* * * *
9282561 GGTCATATGACAGTGTGGTAGGCCGTGT-AGCAGA-TCGTGTA
1 GGTCACACGACCGTATGGTAGGCCGTGTGA-CAGACT-GTGTA
* * ** * ** ** * **
9282602 GGTCATACAACTATGTGGTAGGTTGTGTGGTAGACCGTGCC
1 GGTCACACGACCGTATGGTAGGCCGTGTGACAGACTGTGTA
* * ** * *
9282643 GGTCACAGGACCATATGGTAATCCATGTGACAGACTGTGTG
1 GGTCACACGACCGTATGGTAGGCCGTGTGACAGACTGTGTA
*
9282684 GGTCATACGA
1 GGTCACACGA
9282694 ACATGTAGTA
Statistics
Matches: 158, Mismatches: 51, Indels: 12
0.71 0.23 0.05
Matches are distributed among these distances:
40 3 0.02
41 153 0.97
42 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.24
Consensus pattern (41 bp):
GGTCACACGACCGTATGGTAGGCCGTGTGACAGACTGTGTA
Found at i:9282715 original size:82 final size:81
Alignment explanation
Indices: 9282597--9282752 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
9282587 GTAGCAGATC
* * *
9282597 GTGTAGGTCATACAACTATGTGGTAGGTTGTGTGGTAGACCGTGCCGGTCACAGGACCATATGGT
1 GTGTAGGTCATACAACTATGTAGTAGGCTATGTGGTAGACCGTG-CGGTCACAGGACCATATGGT
*
9282662 AATCCATGTGACAGACT
65 AAGCCATGTGACAGACT
* * * *
9282679 GTGTGGGTCATACGAAC-ATGTAGTAGGCTATGTGGTAGACCGTGTGGTCACATGACCATGTGGT
1 GTGTAGGTCATAC-AACTATGTAGTAGGCTATGTGGTAGACCGTGCGGTCACAGGACCATATGGT
*
9282743 AGGCCATGTG
65 AAGCCATGTG
9282753 GCGATTATGT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 25 0.39
82 36 0.56
83 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (81 bp):
GTGTAGGTCATACAACTATGTAGTAGGCTATGTGGTAGACCGTGCGGTCACAGGACCATATGGTA
AGCCATGTGACAGACT
Found at i:9287875 original size:26 final size:22
Alignment explanation
Indices: 9287824--9287883 Score: 61
Period size: 26 Copynumber: 2.6 Consensus size: 22
9287814 TTTCCACTAT
9287824 TACTT-TTATTTTCTTTATTTA
1 TACTTGTTATTTTCTTTATTTA
9287845 T-CTTGTTATTTTGCTTTAATCGTTA
1 TACTTGTTATTTT-CTTT-AT--TTA
*
9287870 TACTTGCTATTTTC
1 TACTTGTTATTTTC
9287884 ATGCTTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
20 3 0.09
21 8 0.25
22 4 0.12
23 2 0.06
25 5 0.16
26 10 0.31
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (22 bp):
TACTTGTTATTTTCTTTATTTA
Found at i:9290697 original size:31 final size:31
Alignment explanation
Indices: 9290662--9290722 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
9290652 ACAACCCAAC
9290662 GACTTAAATAAAAACTATTGAATAATTCAAT
1 GACTTAAATAAAAACTATTGAATAATTCAAT
* * * *
9290693 GACTTAAATGAGAACTTTTGAATAGTTCAA
1 GACTTAAATAAAAACTATTGAATAATTCAA
9290723 AGACCAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (31 bp):
GACTTAAATAAAAACTATTGAATAATTCAAT
Found at i:9291081 original size:30 final size:31
Alignment explanation
Indices: 9291042--9291101 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
9291032 AAAAGTAATA
9291042 AAATATTAAAA-TATT-TTTATAATTAAATTT
1 AAATATTAAAATTATTATTTA-AATTAAATTT
*
9291072 AAATTTTAAAATTATTATTTAAATTAAATT
1 AAATATTAAAATTATTATTTAAATTAAATT
9291102 CAAGTTGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.37
31 13 0.48
32 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (31 bp):
AAATATTAAAATTATTATTTAAATTAAATTT
Found at i:9291084 original size:19 final size:20
Alignment explanation
Indices: 9291056--9291096 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9291046 ATTAAAATAT
*
9291056 TTTTATAATTA-AATTTAAA
1 TTTTAAAATTATAATTTAAA
*
9291075 TTTTAAAATTATTATTTAAA
1 TTTTAAAATTATAATTTAAA
9291095 TT
1 TT
9291097 AAATTCAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTAAAATTATAATTTAAA
Found at i:9295394 original size:30 final size:30
Alignment explanation
Indices: 9295360--9295446 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
9295350 AATTTTAAAA
9295360 TTTTAAATTAATAAAGATAAAATTATAT-TT
1 TTTTAAATT-ATAAAGATAAAATTATATGTT
* **
9295390 TTTTAAATTATAAAAATATTATT-TAATGTT
1 TTTTAAATTATAAAGATAAAATTAT-ATGTT
**
9295420 TTAAAAATTATAAAGATAAAAATTATA
1 TTTTAAATTATAAAGAT-AAAATTATA
9295447 AAAAATTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
28 1 0.02
29 13 0.29
30 25 0.56
31 5 0.11
32 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (30 bp):
TTTTAAATTATAAAGATAAAATTATATGTT
Found at i:9295459 original size:16 final size:15
Alignment explanation
Indices: 9295421--9295450 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9295411 TTTAATGTTT
*
9295421 TAAAAATTATAAAGA
1 TAAAAATTATAAAAA
9295436 TAAAAATTATAAAAA
1 TAAAAATTATAAAAA
9295451 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
TAAAAATTATAAAAA
Found at i:9296897 original size:8 final size:8
Alignment explanation
Indices: 9296884--9296986 Score: 55
Period size: 8 Copynumber: 11.9 Consensus size: 8
9296874 TTTAAAATTC
9296884 ATAAAAAT
1 ATAAAAAT
9296892 ATAAAAA-
1 ATAAAAAT
*
9296899 ATTAAAATTT
1 A-TAAAA-AT
9296909 ATAAAAAT
1 ATAAAAAT
9296917 ATAAAAATT
1 ATAAAAA-T
**
9296926 ATTAAACTT
1 A-TAAAAAT
*
9296935 AAAAAAAT
1 ATAAAAAT
9296943 ATTAAAATTGAT
1 A-TAAAA---AT
**
9296955 ATAAACTT
1 ATAAAAAT
9296963 ATAAAAATT
1 ATAAAAA-T
*
9296972 ATAAAAAC
1 ATAAAAAT
9296980 ATAAAAA
1 ATAAAAA
9296987 AATCTAATAA
Statistics
Matches: 72, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
7 1 0.01
8 38 0.53
9 21 0.29
10 5 0.07
11 4 0.06
12 3 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (8 bp):
ATAAAAAT
Found at i:9296911 original size:17 final size:18
Alignment explanation
Indices: 9296891--9297068 Score: 67
Period size: 20 Copynumber: 9.4 Consensus size: 18
9296881 TTCATAAAAA
*
9296891 TATAAAAA-ATTAAAATT
1 TATAAAAATATAAAAATT
9296908 TATAAAAATATAAAAA-T
1 TATAAAAATATAAAAATT
* * **
9296925 TATTAAACT-TAAAAAAA
1 TATAAAAATATAAAAATT
* * *
9296942 TATTAAAATTGATATAAACT
1 TA-TAAAAAT-ATAAAAATT
**
9296962 TATAAAAATTATAAAAACA
1 TATAAAAA-TATAAAAATT
* * *
9296981 TAAAAAAATCTAATAATT
1 TATAAAAATATAAAAATT
* *
9296999 TATGAAGAATTTTATAAAATT
1 TAT-AA-AAATATA-AAAATT
* *
9297020 AATAAAACATATTTAAAATTT
1 TATAAAA-ATA--TAAAAATT
9297041 TATAAAAACTTAATAAAAA-T
1 TATAAAAA--T-ATAAAAATT
9297061 TATAAAAA
1 TATAAAAA
9297069 AAAATCATAA
Statistics
Matches: 119, Mismatches: 27, Indels: 27
0.69 0.16 0.16
Matches are distributed among these distances:
16 6 0.05
17 18 0.15
18 19 0.16
19 23 0.19
20 26 0.22
21 23 0.19
22 3 0.03
23 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (18 bp):
TATAAAAATATAAAAATT
Found at i:9296976 original size:28 final size:25
Alignment explanation
Indices: 9296875--9296977 Score: 100
Period size: 26 Copynumber: 3.9 Consensus size: 25
9296865 AAAAAAAGAT
* *
9296875 TTAAAATTCATAAAAATATAAAA-AA
1 TTAAACTT-ATAAAAATATAAAATTA
*
9296900 TTAAAATTTATAAAAATATAAAAATTA
1 TT-AAACTTATAAAAATAT-AAAATTA
*
9296927 TTAAACTTAAAAAAATATTAAAATTGA
1 TTAAACTTATAAAAATA-TAAAATT-A
9296954 TATAAACTTATAAAAATTATAAAA
1 T-TAAACTTATAAAAA-TATAAAA
9296978 ACATAAAAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
25 12 0.18
26 28 0.42
27 6 0.09
28 18 0.27
29 2 0.03
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (25 bp):
TTAAACTTATAAAAATATAAAATTA
Found at i:9297067 original size:9 final size:9
Alignment explanation
Indices: 9296877--9297068 Score: 97
Period size: 9 Copynumber: 20.4 Consensus size: 9
9296867 AAAAAGATTT
9296877 AAAATTCATA
1 AAAATT-ATA
9296887 AAAA-TATA
1 AAAATTATA
*
9296895 AAAAAT-TA
1 AAAATTATA
*
9296903 AAATTTATA
1 AAAATTATA
9296912 AAAA-TATA
1 AAAATTATA
*
9296920 AAAATTATT
1 AAAATTATA
*
9296929 AAACTTA-A
1 AAAATTATA
* *
9296937 AAAAATATT
1 AAAATTATA
9296946 AAAATTGATA
1 AAAATT-ATA
*
9296956 TAAACTTATA
1 -AAAATTATA
9296966 AAAATTATA
1 AAAATTATA
* *
9296975 AAAACATAAA
1 AAAA-TTATA
9296985 AAAATCTA-A
1 AAAAT-TATA
* *
9296994 TAATTTATGA
1 AAAATTAT-A
* *
9297004 AGAATTTTA
1 AAAATTATA
9297013 TAAAATTAATA
1 -AAAATT-ATA
*
9297024 AAACATATTTA
1 AAA-AT-TATA
*
9297035 AAATTTTATA
1 AAA-ATTATA
9297045 AAAACTTAATA
1 AAAA-TT-ATA
9297056 AAAATTATA
1 AAAATTATA
9297065 AAAA
1 AAAA
9297069 AAAATCATAA
Statistics
Matches: 137, Mismatches: 29, Indels: 33
0.69 0.15 0.17
Matches are distributed among these distances:
8 28 0.20
9 45 0.33
10 41 0.30
11 22 0.16
12 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:9297067 original size:30 final size:30
Alignment explanation
Indices: 9297006--9297067 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
9296996 ATTTATGAAG
*
9297006 AATTTTATAAAATTAATAAAACATATTTAA
1 AATTTTATAAAATTAATAAAACATATATAA
9297036 AATTTTATAAAAACTTAATAAAA-AT-TATAA
1 AATTTTAT-AAAA-TTAATAAAACATATATAA
9297066 AA
1 AA
9297068 AAAAATCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 14 0.48
31 6 0.21
32 9 0.31
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (30 bp):
AATTTTATAAAATTAATAAAACATATATAA
Found at i:9297068 original size:10 final size:10
Alignment explanation
Indices: 9296877--9297069 Score: 53
Period size: 10 Copynumber: 20.4 Consensus size: 10
9296867 AAAAAGATTT
9296877 AAAATTCAT-A
1 AAAATT-ATAA
9296887 AAAA-TATAA
1 AAAATTATAA
9296896 AAAA-T-T-A
1 AAAATTATAA
*
9296903 AAATTTAT-A
1 AAAATTATAA
9296912 AAAA-TAT-A
1 AAAATTATAA
*
9296920 AAAATTAT-T
1 AAAATTATAA
*
9296929 AAACTTA-AA
1 AAAATTATAA
*
9296938 AAAA-TAT-T
1 AAAATTATAA
*
9296946 AAAATTGATAT
1 AAAATT-ATAA
*
9296957 AAACTTAT-A
1 AAAATTATAA
9296966 AAAATTATAA
1 AAAATTATAA
9296976 AAACA-TA-AA
1 AAA-ATTATAA
*
9296985 AAAA-TCTAA
1 AAAATTATAA
* * *
9296994 TAATTTATGA
1 AAAATTATAA
* * *
9297004 AGAATTTTAT
1 AAAATTATAA
9297014 AAAATTAATAA
1 AAAATT-ATAA
9297025 AACATATT-TAA
1 AA-A-ATTATAA
**
9297036 AATTTTATAA
1 AAAATTATAA
*
9297046 AAACTTA-ATA
1 AAAATTATA-A
9297056 AAAATTATAA
1 AAAATTATAA
9297066 AAAA
1 AAAA
9297070 AAATCATAAA
Statistics
Matches: 135, Mismatches: 29, Indels: 38
0.67 0.14 0.19
Matches are distributed among these distances:
7 4 0.03
8 20 0.15
9 44 0.33
10 46 0.34
11 17 0.13
12 1 0.01
13 3 0.02
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAATTATAA
Found at i:9300476 original size:21 final size:21
Alignment explanation
Indices: 9300431--9300480 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
9300421 CTAAGATGTG
* *
9300431 AATTGGATTAAATTGAATTTG
1 AATTGTATTAAATTGAATTTA
9300452 AATTGTATTAAATTG-ATGTTA
1 AATTGTATTAAATTGAAT-TTA
9300473 AATT-TATT
1 AATTGTATT
9300481 CATATATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (21 bp):
AATTGTATTAAATTGAATTTA
Found at i:9301088 original size:24 final size:24
Alignment explanation
Indices: 9301056--9301172 Score: 69
Period size: 25 Copynumber: 4.7 Consensus size: 24
9301046 ACCTTTCCGA
9301056 TATTGGCTCGTATGAGCTTCCCGT
1 TATTGGCTCGTATGAGCTTCCCGT
* *
9301080 TATTGGCTC-TCCA-GAGTTTTCCGT
1 TATTGGCTCGT--ATGAGCTTCCCGT
* **
9301104 TACATGGCTCACATGAGCTTCCCGT
1 TA-TTGGCTCGTATGAGCTTCCCGT
* * *
9301129 TATATGGCTAGAGAGAGAGCTTCCCGT
1 TAT-TGGCTCG-TA-TGAGCTTCCCGT
9301156 T-TATGTGCTCGTATGAG
1 TAT-TG-GCTCGTATGAG
9301173 TATTCCCGAA
Statistics
Matches: 70, Mismatches: 14, Indels: 17
0.69 0.14 0.17
Matches are distributed among these distances:
23 1 0.01
24 21 0.30
25 26 0.37
26 6 0.09
27 16 0.23
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (24 bp):
TATTGGCTCGTATGAGCTTCCCGT
Found at i:9301128 original size:25 final size:25
Alignment explanation
Indices: 9301067--9301137 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
9301057 ATTGGCTCGT
* *
9301067 ATGAGCTTCCCGTTATTGGCTCTCC
1 ATGAGCTTCCCGTTAATGGCTCTAC
* *
9301092 A-GAGTTTTCCGTTACATGGCTC-AC
1 ATGAGCTTCCCGTTA-ATGGCTCTAC
9301116 ATGAGCTTCCCGTTATATGGCT
1 ATGAGCTTCCCGTTA-ATGGCT
9301138 AGAGAGAGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
24 13 0.35
25 24 0.65
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCGTTAATGGCTCTAC
Found at i:9303474 original size:10 final size:10
Alignment explanation
Indices: 9303461--9303612 Score: 64
Period size: 10 Copynumber: 15.1 Consensus size: 10
9303451 TTTAATAATA
9303461 TTTATAAGTT
1 TTTATAAGTT
*
9303471 TTTA-AGATTT
1 TTTATA-AGTT
* *
9303481 TTTTTATGATT
1 TTTATAAG-TT
*
9303492 TTGATAAGTT
1 TTTATAAGTT
* *
9303502 TTTATGATTT
1 TTTATAAGTT
9303512 TTTATAAGTT
1 TTTATAAGTT
**
9303522 TTTATAAAAT
1 TTTATAAGTT
*
9303532 TTTA-AATATGT
1 TTTATAA-GT-T
9303543 TTTATTAA--T
1 TTTA-TAAGTT
**
9303552 TTTATTAAACT
1 TTTA-TAAGTT
*
9303563 TTTATAA-TA
1 TTTATAAGTT
*
9303572 TTTATAAATT
1 TTTATAAGTT
* *
9303582 TTTATTATTT
1 TTTATAAGTT
9303592 TATTATAA-TT
1 T-TTATAAGTT
9303602 TTTATAAGTT
1 TTTATAAGTT
9303612 T
1 T
9303613 ATATCAATTT
Statistics
Matches: 109, Mismatches: 21, Indels: 24
0.71 0.14 0.16
Matches are distributed among these distances:
9 25 0.23
10 59 0.54
11 23 0.21
13 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.61
Consensus pattern (10 bp):
TTTATAAGTT
Found at i:9303503 original size:20 final size:21
Alignment explanation
Indices: 9303480--9303524 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
9303470 TTTTAAGATT
9303480 TTTTTTATGA-TTTTGATAAG
1 TTTTTTATGATTTTTGATAAG
*
9303500 -TTTTTATGATTTTTTATAAG
1 TTTTTTATGATTTTTGATAAG
9303520 TTTTT
1 TTTTT
9303525 ATAAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 9 0.41
21 4 0.18
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (21 bp):
TTTTTTATGATTTTTGATAAG
Found at i:9303534 original size:20 final size:20
Alignment explanation
Indices: 9303481--9303608 Score: 88
Period size: 20 Copynumber: 6.5 Consensus size: 20
9303471 TTTAAGATTT
* * *
9303481 TTTTTATGAT-TTTGATAAG
1 TTTTTATAATATTTTATAAA
* * *
9303500 TTTTTATGATTTTTTATAAG
1 TTTTTATAATATTTTATAAA
*
9303520 TTTTTATAAAATTTTA-AATA
1 TTTTTATAATATTTTATAA-A
*
9303540 TGTTTTATTA-ATTTTATTAAA
1 T-TTTTATAATATTTTA-TAAA
*
9303561 CTTTTATAATA-TTTATAAA
1 TTTTTATAATATTTTATAAA
9303580 TTTTTAT--TATTTTATTATAA
1 TTTTTATAATATTTTA-TA-AA
9303600 TTTTTATAA
1 TTTTTATAA
9303609 GTTTATATCA
Statistics
Matches: 89, Mismatches: 9, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
17 2 0.02
18 4 0.04
19 24 0.27
20 48 0.54
21 9 0.10
22 2 0.02
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTTTATAATATTTTATAAA
Found at i:9303613 original size:20 final size:21
Alignment explanation
Indices: 9303495--9303633 Score: 80
Period size: 20 Copynumber: 6.9 Consensus size: 21
9303485 TATGATTTTG
* *
9303495 ATAAGTTTTTATGATTTT-TT
1 ATAAATTTTTATAATTTTATT
* **
9303515 ATAAGTTTTTATAAAATT-TT
1 ATAAATTTTTATAATTTTATT
9303535 A-AATATGTTTTATTAATTTTA-T
1 ATAA-AT-TTTTA-TAATTTTATT
* *
9303557 -TAAACTTTTATAA-TAT-TT
1 ATAAATTTTTATAATTTTATT
*
9303575 ATAAATTTTTATTATTTTATT
1 ATAAATTTTTATAATTTTATT
*
9303596 AT-AATTTTTATAAGTTTA-T
1 ATAAATTTTTATAATTTTATT
* * *
9303615 ATCAATTTTAATATTTTTA
1 ATAAATTTTTATAATTTTA
9303634 AATTTAATAA
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
18 3 0.03
19 19 0.20
20 53 0.57
21 10 0.11
22 8 0.09
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (21 bp):
ATAAATTTTTATAATTTTATT
Found at i:9303624 original size:39 final size:38
Alignment explanation
Indices: 9303482--9303608 Score: 107
Period size: 39 Copynumber: 3.2 Consensus size: 38
9303472 TTAAGATTTT
* * * *
9303482 TTTTATGAT-TTTGATAAGTTTTTATGATTTT-TTATAAGT
1 TTTTATAATATTT-ATAAATTTTTATTATTTTATTA-AA-C
*
9303521 TTTTATAAAATTT-TAAATATGTTTTATTAATTTTATTAAAC
1 TTTTATAATATTTAT-AA-AT-TTTTATT-ATTTTATTAAAC
*
9303562 TTTTATAATATTTATAAATTTTTATTATTTTATTATAAT
1 TTTTATAATATTTATAAATTTTTATTATTTTATTA-AAC
9303601 TTTTATAA
1 TTTTATAA
9303609 GTTTATATCA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
38 10 0.14
39 26 0.36
40 6 0.08
41 20 0.27
42 8 0.11
43 3 0.04
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.61
Consensus pattern (38 bp):
TTTTATAATATTTATAAATTTTTATTATTTTATTAAAC
Found at i:9309207 original size:5 final size:5
Alignment explanation
Indices: 9309187--9309224 Score: 58
Period size: 5 Copynumber: 7.2 Consensus size: 5
9309177 TTATAGCATG
9309187 GAAAA GTAACAA GAAAA GAAAA GAAAA GAAAA GAAAA G
1 GAAAA G-AA-AA GAAAA GAAAA GAAAA GAAAA GAAAA G
9309225 CTTTCTTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 24 0.77
6 4 0.13
7 3 0.10
ACGTcount: A:0.74, C:0.03, G:0.21, T:0.03
Consensus pattern (5 bp):
GAAAA
Found at i:9312824 original size:50 final size:50
Alignment explanation
Indices: 9312749--9312925 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
9312739 CCATGGCAAC
*
9312749 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
9312799 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
9312849 AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
9312899 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
9312926 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 92 0.80
51 23 0.20
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:9312939 original size:31 final size:31
Alignment explanation
Indices: 9312901--9313049 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
9312891 ACAAATGACA
9312901 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
9312932 AGTGAAAAGTGGTAGCTTCTGCTACTTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
9312963 AGTGAAAAGTGGTAGCTCCGACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
9312994 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
9313025 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
9313050 AAGTGACAAG
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:9313219 original size:49 final size:48
Alignment explanation
Indices: 9313067--9313289 Score: 216
Period size: 47 Copynumber: 4.8 Consensus size: 48
9313057 AAGTGATTTC
* * * * * *
9313067 CGTGTAAGACCATATCTGGGATATGGCATCG--GTGTGATATATGCTA
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT
* * * * * *
9313113 CTGTATAAGACCATATCTGAGATATGGCATC-A-GTGAGATATGTGATT
1 C-GTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT
*
9313160 CGTGTAAGACCATAGCTGGGCTACGGCATCGATATGTGATATGTGATT
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT
*
9313208 ACGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T
1 -CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT
9313252 -GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
9313290 AGATGTGTAA
Statistics
Matches: 155, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.23
44 1 0.01
45 1 0.01
46 26 0.17
47 40 0.26
48 14 0.09
49 37 0.24
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT
Found at i:9313256 original size:42 final size:43
Alignment explanation
Indices: 9313161--9313324 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
9313151 TATGTGATTC
* *
9313161 GTGTAAGACCATAGCTGGGCTACGGCATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
9313208 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
9313252 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* * **
9313294 GTGTAAGATCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
9313325 GAAAACGAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 63 0.61
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 29 0.28
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:9313279 original size:91 final size:93
Alignment explanation
Indices: 9313067--9313289 Score: 244
Period size: 91 Copynumber: 2.4 Consensus size: 93
9313057 AAGTGATTTC
* * * *
9313067 CGTGTAAGACCATATCTGGGATATGGCATCG--GTGTGATATATGCTACTGTATAAGACCATATC
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATATGCTACTGTATAAGACCATAGC
*
9313130 TGAGATATGGCATCAGTGAGATATGTGATT
66 TGAGATATGGCATCA--GAGATATGTAATT
* * * *
9313160 CGTGTAAGACCATAGCTGGGCTACGGCATCGATATGTGATATGTGATTAC-GTGTAAGACCATAG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATATG-CTACTGTATAAGACCATAG
* * *
9313224 CTGGGCTATGGCATC-GATATATG-AATAT
65 CTGAGATATGGCATCAGAGATATGTAAT-T
9313252 -GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
9313290 AGATGTGTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
90 1 0.01
91 37 0.33
92 8 0.07
93 28 0.25
95 35 0.31
96 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (93 bp):
CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATATGCTACTGTATAAGACCATAGC
TGAGATATGGCATCAGAGATATGTAATT
Found at i:9318727 original size:30 final size:30
Alignment explanation
Indices: 9318693--9318751 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
9318683 TTCAAGAGAT
*
9318693 AGGCTATTATGAGCTTAACCAAGAAGCTGG
1 AGGCTATAATGAGCTTAACCAAGAAGCTGG
*
9318723 AGGCTATAATGAGCTTAGCCAAGAAGCTG
1 AGGCTATAATGAGCTTAACCAAGAAGCTG
9318752 AAGACATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (30 bp):
AGGCTATAATGAGCTTAACCAAGAAGCTGG
Found at i:9320114 original size:21 final size:21
Alignment explanation
Indices: 9320088--9320127 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9320078 TAACATAACG
*
9320088 ATAATATTTTAGTTACAAATA
1 ATAATATATTAGTTACAAATA
*
9320109 ATAATATATTGGTTACAAA
1 ATAATATATTAGTTACAAA
9320128 ATGAAATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (21 bp):
ATAATATATTAGTTACAAATA
Found at i:9323485 original size:29 final size:30
Alignment explanation
Indices: 9323448--9323517 Score: 97
Period size: 29 Copynumber: 2.3 Consensus size: 30
9323438 ATTTTAATAT
*
9323448 ATTATATTTTTATAATTTTTAAAG-ATTAA
1 ATTAAATTTTTATAATTTTTAAAGAATTAA
*
9323477 ATTAAATTTTTATCATTTTTAAAGAATTAA
1 ATTAAATTTTTATAATTTTTAAAGAATTAA
*
9323507 AGTACAATTTT
1 ATTA-AATTTT
9323518 ACTATTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 22 0.61
30 8 0.22
31 6 0.17
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.51
Consensus pattern (30 bp):
ATTAAATTTTTATAATTTTTAAAGAATTAA
Found at i:9325730 original size:19 final size:20
Alignment explanation
Indices: 9325699--9325737 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9325689 CATCAGTTGA
9325699 TTGGAAGAAAGAATAAAAAT
1 TTGGAAGAAAGAATAAAAAT
*
9325719 TTGGAA-AAAGAATGAAAAT
1 TTGGAAGAAAGAATAAAAAT
9325738 AAAATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (20 bp):
TTGGAAGAAAGAATAAAAAT
Found at i:9327467 original size:131 final size:130
Alignment explanation
Indices: 9327183--9327534 Score: 327
Period size: 131 Copynumber: 2.7 Consensus size: 130
9327173 TAGAAAATAC
* * * * *
9327183 GAGTGAAATTTCGAAGGGATCTTCGATTGTTTTGAGCAAATGAAAAAGTACAACCCAGCACGATA
1 GAGTGAAATTTTGAAGGGATATTCGATTGTTTTGAACAAACGAGAAA-TACAACCCAGCACGATA
* ** *
9327248 GGGC-TCGATTCTCAAACCACCAAACATCGGACATCGCCTTCGTTTTGAAAGGTTTTTAATAAAC
65 GGGCAT-GATTCTCGAATTACCAAACACCGGACATCGCCTTCGTTTTGAAAGGTTTTTAATAAAC
9327312 AT
129 AT
* *** * * *
9327314 GAATGAAAACCTAAAGGAATATTCAATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATA
1 GAGTGAAATTTTGAAGGGATATTCGATTGTTTTGAACAAACGAGAAAT-ACAACCCAGCACGATA
* * * * *
9327379 GGGCATGATTCTCGAATTATCAAACACC-GAGTATTGCCTTCGTTTT-AAAGGATTTTTGGA-AG
65 GGGCATGATTCTCGAATTACCAAACACCGGA-CATCGCCTTCGTTTTGAAAGG-TTTTT-AATAA
9327441 ACAT
127 ACAT
* * * * * *
9327445 GTGTGAAATTTTGAAGGGATATTTGATTATTTT-AAGCAAACGGGAAATTGCAACCCAGCACGTT
1 GAGTGAAATTTTGAAGGGATATTCGATTGTTTTGAA-CAAACGAGAAA-TACAACCCAGCACGAT
* *
9327509 AGGGCACGATTCCGCGAATTACCAAA
64 AGGGCATGATT-CTCGAATTACCAAA
9327535 TATCGCATAT
Statistics
Matches: 176, Mismatches: 37, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
130 10 0.06
131 151 0.86
132 15 0.09
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (130 bp):
GAGTGAAATTTTGAAGGGATATTCGATTGTTTTGAACAAACGAGAAATACAACCCAGCACGATAG
GGCATGATTCTCGAATTACCAAACACCGGACATCGCCTTCGTTTTGAAAGGTTTTTAATAAACAT
Found at i:9330623 original size:12 final size:12
Alignment explanation
Indices: 9330606--9330630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9330596 TTCTTGCTTC
9330606 TTCTTTTTTTTT
1 TTCTTTTTTTTT
9330618 TTCTTTTTTTTT
1 TTCTTTTTTTTT
9330630 T
1 T
9330631 AATTTCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:9332288 original size:27 final size:27
Alignment explanation
Indices: 9332257--9332317 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
9332247 TATGAATCCT
*
9332257 GAACCTAAAATCCCAAACCTTGAA-CTC
1 GAACCTAAAA-CCCAAACCTTAAACCTC
**
9332284 GAACCCTAAAACTTAAACCTTAAACCTC
1 GAA-CCTAAAACCCAAACCTTAAACCTC
9332312 GAACCT
1 GAACCT
9332318 TGCGATTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 16 0.55
28 13 0.45
ACGTcount: A:0.41, C:0.33, G:0.07, T:0.20
Consensus pattern (27 bp):
GAACCTAAAACCCAAACCTTAAACCTC
Found at i:9332291 original size:28 final size:28
Alignment explanation
Indices: 9332260--9332316 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
9332250 GAATCCTGAA
*
9332260 CCTAAAATCCCAAACCTTGAA-CTCGAAC
1 CCTAAAA-CCCAAACCTTAAACCTCGAAC
**
9332288 CCTAAAACTTAAACCTTAAACCTCGAAC
1 CCTAAAACCCAAACCTTAAACCTCGAAC
9332316 C
1 C
9332317 TTGCGATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.40, C:0.35, G:0.05, T:0.19
Consensus pattern (28 bp):
CCTAAAACCCAAACCTTAAACCTCGAAC
Found at i:9332835 original size:2 final size:2
Alignment explanation
Indices: 9332828--9332858 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9332818 CCCACAAATT
9332828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9332859 TAGATATTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9334282 original size:25 final size:25
Alignment explanation
Indices: 9334243--9334291 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
9334233 AAGGAATTTA
*
9334243 AAATTAAAAAAACTAATA-ATAAAC
1 AAATAAAAAAAACTAATACATAAAC
*
9334267 AAATAAAAAATAACTATTACATAAA
1 AAATAAAAAA-AACTAATACATAAA
9334292 ACAGCTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 7 0.33
26 5 0.24
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (25 bp):
AAATAAAAAAAACTAATACATAAAC
Found at i:9336414 original size:30 final size:30
Alignment explanation
Indices: 9336370--9336428 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
9336360 TCCGAGCCTT
*
9336370 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* *
9336400 GGGGCAAAAA-TGTAATTTTGCAAAAGTTT
1 GGGG-AAAAAGTGTAAATATGCAAAAGTTT
9336429 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:9339001 original size:82 final size:82
Alignment explanation
Indices: 9338864--9339027 Score: 328
Period size: 82 Copynumber: 2.0 Consensus size: 82
9338854 CTAAAAGTAA
9338864 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
1 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
9338929 CCATTAAATTAAGATAT
66 CCATTAAATTAAGATAT
9338946 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
1 GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
9339011 CCATTAAATTAAGATAT
66 CCATTAAATTAAGATAT
9339028 CTACCTTAAT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (82 bp):
GAAAATATAGAAGCATTTACGAATTCTGGAGCATGGTGTTCAGTTACTTCAGTACCAAACCAATA
CCATTAAATTAAGATAT
Found at i:9342147 original size:18 final size:16
Alignment explanation
Indices: 9342124--9342158 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9342114 AATTTAACTT
9342124 TAATTAAATTATTTAAAA
1 TAATT-AATT-TTTAAAA
9342142 TAATTAATTTTTAAAA
1 TAATTAATTTTTAAAA
9342158 T
1 T
9342159 TATAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATTTTTAAAA
Found at i:9342417 original size:27 final size:26
Alignment explanation
Indices: 9342380--9342436 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
9342370 ATTAATGAGT
* *
9342380 TTTAGGATTTGGATTCGAGGTTTAAGG
1 TTTAGGATTTGAATTCAAGGTTT-AGG
* *
9342407 TTTAGGGTTTGAATTTAAGGTTTAGG
1 TTTAGGATTTGAATTCAAGGTTTAGG
9342433 TTTA
1 TTTA
9342437 TGTTTAGGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.46
Consensus pattern (26 bp):
TTTAGGATTTGAATTCAAGGTTTAGG
Found at i:9345378 original size:30 final size:30
Alignment explanation
Indices: 9345344--9345403 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
9345334 ACTTAACAAG
9345344 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
9345374 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
9345404 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:9348165 original size:20 final size:20
Alignment explanation
Indices: 9348121--9348159 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9348111 TAATTTTTTA
*
9348121 AAATTAAATAATTAAAATAT
1 AAATTAAATAATAAAAATAT
9348141 AAATTAAATAATAATAAAT
1 AAATTAAATAATAA-AAAT
9348160 GTAATTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATTAAATAATAAAAATAT
Found at i:9348740 original size:39 final size:39
Alignment explanation
Indices: 9348666--9348741 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
9348656 GAGGGTTAAA
***
9348666 ATTAAATTATAATTTTATTATTTTAAAATTTTTAAAAAG
1 ATTAAATTATAATTTTATTATTTTAAAAGAATTAAAAAG
**
9348705 ATTAAATTGA-AATTTTATTATTTTAATGGAATTAAAA
1 ATTAAATT-ATAATTTTATTATTTTAAAAGAATTAAAA
9348742 TTTATTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 30 0.97
40 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (39 bp):
ATTAAATTATAATTTTATTATTTTAAAAGAATTAAAAAG
Found at i:9350039 original size:14 final size:15
Alignment explanation
Indices: 9350020--9350053 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
9350010 CAGAATCTAA
9350020 AAAAAATTT-AGCTC
1 AAAAAATTTGAGCTC
*
9350034 AAAAAATTTGAGTTC
1 AAAAAATTTGAGCTC
9350049 AAAAA
1 AAAAA
9350054 GGCCGAGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (15 bp):
AAAAAATTTGAGCTC
Found at i:9357409 original size:26 final size:26
Alignment explanation
Indices: 9357380--9357432 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
9357370 TCAAACATGC
*
9357380 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
9357406 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
9357432 A
1 A
9357433 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:9358951 original size:26 final size:26
Alignment explanation
Indices: 9358921--9358976 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
9358911 TGAAATGCCC
9358921 ATCATGGAACATTTACCTAACCCAAT
1 ATCATGGAACATTTACCTAACCCAAT
*
9358947 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCAAT
9358973 ATCA
1 ATCA
9358977 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.29
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCAAT
Found at i:9360294 original size:18 final size:18
Alignment explanation
Indices: 9360271--9360306 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9360261 CCCAACTACT
*
9360271 GTATACGTGAATAGTGCC
1 GTATACATGAATAGTGCC
9360289 GTATACATGAATAGTGCC
1 GTATACATGAATAGTGCC
9360307 ATAAATGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACATGAATAGTGCC
Found at i:9364536 original size:27 final size:27
Alignment explanation
Indices: 9364466--9364520 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
9364456 ACAAATGGGT
9364466 AAAGTCTCCATCTTCTTGACTAAGCTC
1 AAAGTCTCCATCTTCTTGACTAAGCTC
9364493 AAAGTCTCCATCTTCTTGACTAAGCTC
1 AAAGTCTCCATCTTCTTGACTAAGCTC
9364520 A
1 A
9364521 TAATAGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (27 bp):
AAAGTCTCCATCTTCTTGACTAAGCTC
Found at i:9367878 original size:23 final size:23
Alignment explanation
Indices: 9367851--9367896 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9367841 GGCACACACC
9367851 CATGTGGCTAGGATGTGTGGTAA
1 CATGTGGCTAGGATGTGTGGTAA
9367874 CATGTGGCTAGGATGTGTGGTAA
1 CATGTGGCTAGGATGTGTGGTAA
9367897 ACTAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.39, T:0.30
Consensus pattern (23 bp):
CATGTGGCTAGGATGTGTGGTAA
Found at i:9369895 original size:9 final size:9
Alignment explanation
Indices: 9369854--9369908 Score: 55
Period size: 8 Copynumber: 6.6 Consensus size: 9
9369844 ATTTTATGCT
9369854 TTAT-TATA
1 TTATATATA
*
9369862 TTAT-TAAA
1 TTATATATA
9369870 TTAT-TATA
1 TTATATATA
*
9369878 ATA-ATATA
1 TTATATATA
9369886 TTATATATA
1 TTATATATA
*
9369895 TTATATATC
1 TTATATATA
9369904 TTATA
1 TTATA
9369909 CTTAAAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
8 22 0.55
9 18 0.45
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (9 bp):
TTATATATA
Found at i:9374903 original size:15 final size:15
Alignment explanation
Indices: 9374883--9374912 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9374873 CATTTTATTT
*
9374883 ATATTAGGATAATTA
1 ATATTAAGATAATTA
9374898 ATATTAAGATAATTA
1 ATATTAAGATAATTA
9374913 TTAGGATGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:9374938 original size:13 final size:13
Alignment explanation
Indices: 9374920--9374944 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9374910 TTATTAGGAT
9374920 GATTTAATTTTAG
1 GATTTAATTTTAG
9374933 GATTTAATTTTA
1 GATTTAATTTTA
9374945 ATTATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
GATTTAATTTTAG
Found at i:9380303 original size:25 final size:24
Alignment explanation
Indices: 9380249--9380304 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
9380239 CTTTATACTT
* * *
9380249 TTTTTATTAATTTGATCATTATTT
1 TTTTAATTAATTTGATCATTAATC
9380273 TATTTAATTAAATTTGATCATTAATC
1 T-TTTAATT-AATTTGATCATTAATC
9380299 TTTTAA
1 TTTTAA
9380305 AAAAGTCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 11 0.41
26 15 0.56
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (24 bp):
TTTTAATTAATTTGATCATTAATC
Found at i:9388330 original size:29 final size:29
Alignment explanation
Indices: 9388298--9388360 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
9388288 GATATTGATT
*
9388298 TTAGGACTAAATTGTGAAAAGACTAAATA
1 TTAGGACTAAATTATGAAAAGACTAAATA
**
9388327 TTAGGGTTAAATTATGAAAAGACTAAATA
1 TTAGGACTAAATTATGAAAAGACTAAATA
9388356 TTAGG
1 TTAGG
9388361 GCTTGGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (29 bp):
TTAGGACTAAATTATGAAAAGACTAAATA
Found at i:9388361 original size:29 final size:29
Alignment explanation
Indices: 9388305--9388361 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
9388295 ATTTTAGGAC
*
9388305 TAAATTGTGAAAAGACTAAATATTAGGGT
1 TAAATTATGAAAAGACTAAATATTAGGGT
9388334 TAAATTATGAAAAGACTAAATATTAGGG
1 TAAATTATGAAAAGACTAAATATTAGGG
9388362 CTTGGTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (29 bp):
TAAATTATGAAAAGACTAAATATTAGGGT
Found at i:9390861 original size:208 final size:209
Alignment explanation
Indices: 9390203--9390986 Score: 910
Period size: 209 Copynumber: 3.7 Consensus size: 209
9390193 AAATGATCAT
* * * *
9390203 ACCTAAGTTTATTTGAGTTAGTTGACTTCAGATCGCAACTCCTAAATAGCTCAATGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * * *
9390268 CACATCTGATATTAT-AAGGTTTAGCTGATTTAAAATCACAACCTAAGTTAATTTAAGTTAGTTG
66 CACAGCTAATATTATAAAGG-TTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTG
* ** * * * *
9390332 ATTTTAGGATAACAACTCCTAAATAGCTCGCTAACCTATGTTCACAACTGATATTATAGAAGTTA
130 A-TTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATA-AGGTTA
* *
9390397 GCTGATTTAAGATCGTA
193 GCTGATTTAAGATTGCA
* * * * *
9390414 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAACTCGCCGACCTATGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
** * * * * * * *
9390479 TGCAGCTGATTTTTTAAAGGTTAACTGATTAAAGATTGCAACCTAAGTTTATTTTTA-TTAGTT-
66 CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTA-TTTGAGTTAGTTG
* * * * * * *
9390542 ATTTAAGATCGCAACTCTTATACAGCTCGTCGACCTATGTTCATAGTTGATATTATGAAGGTTAA
130 ATTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTAT-AAGGTTAG
* *
9390607 TTGATTTAATATTGCA
194 CTGATTTAAGATTGCA
* * * * * **
9390623 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCTCAACTTCTAAAGAGCTCGCTGACCTATTTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * * * *
9390688 CACATCTAATATTATAAAGGTTAGCTAATTTAATATTGCAACCTAAGTTTATTTGAGTTAGTTTA
66 CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGA
* * **
9390753 TTTAAGATTGCAACTCTTAAATAGCTCGTTGACCTACATTCACAGCTGATATTA-AAGGTTAGCT
131 TTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATAAGGTTAGCT
*
9390817 AATTTAAGATTGCA
196 GATTTAAGATTGCA
* *
9390831 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCGCAACTCCTAAACAGCTCACTGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
* * *
9390896 CACAGCTAATATTGTAAAGGTTAGTTGATTTAAGATCGCAACTTAAGTTTATTTGAGTTAGTTGA
66 CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGA
*
9390961 TTTAAGATCGCAACTCCTGAATAGCT
131 TTTAAGATCGCAACTCCTAAATAGCT
9390987 TACTGATATA
Statistics
Matches: 483, Mismatches: 85, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
208 163 0.34
209 164 0.34
210 49 0.10
211 99 0.20
212 8 0.02
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (209 bp):
ACCTAAGTTTATTTGAGTTAATTGATTTAAGATCGCAACTCCTAAATAGCTCACTGACCTACGTT
CACAGCTAATATTATAAAGGTTAGCTGATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGA
TTTAAGATCGCAACTCCTAAATAGCTCGTTGACCTATGTTCACAGCTGATATTATAAGGTTAGCT
GATTTAAGATTGCA
Found at i:9390992 original size:105 final size:105
Alignment explanation
Indices: 9390203--9390986 Score: 898
Period size: 105 Copynumber: 7.5 Consensus size: 105
9390193 AAATGATCAT
* * ** *
9390203 ACCTAAGTTTATTTGAGTTAGTTGACTTCAGATCGCAACTCCTAAATAGCTCAATGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
* * **
9390268 CACATCTGATATTAT-AAGGTTTAGCTGATTTAAAATCACA
66 CACAGCTGATATTATAAAGG-TTAGCTGATTTAAGATTGCA
* * * ** *
9390308 ACCTAAGTTAATTTAAGTTAGTTGATTTTAGGATAACAACTCCTAAATAGCTCGCTAACCTATGT
1 ACCTAAGTTTATTTGAGTTAGTTGA-TTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGT
* * *
9390373 TCACAACTGATATTATAGAA-GTTAGCTGATTTAAGATCGTA
65 TCACAGCTGATATTATA-AAGGTTAGCTGATTTAAGATTGCA
* *
9390414 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAACTCGCCGACCTATGTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
** * * * *
9390479 TGCAGCTGATTTTTTAAAGGTTAACTGATTAAAGATTGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * *
9390519 ACCTAAGTTTATTTTTA-TTAGTT-ATTTAAGATCGCAACTCTTATACAGCTCG-TCGACCTATG
1 ACCTAAGTTTA-TTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCT-GACCTATG
* * * ** *
9390581 TTCATAGTTGATATTATGAAGGTTAATTGATTTAATATTGCA
64 TTCACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * * * *
9390623 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCTCAACTTCTAAAGAGCTCGCTGACCTATTTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
* * * *
9390688 CACATCTAATATTATAAAGGTTAGCTAATTTAATATTGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * * **
9390728 ACCTAAGTTTATTTGAGTTAGTTTATTTAAGATTGCAACTCTTAAATAGCTCGTTGACCTACATT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
*
9390793 CACAGCTGATA-T-TAAAGGTTAGCTAATTTAAGATTGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* * * * *
9390831 ACCTAAGTTTATTTGAGTTAATTGATTTAATATCGCAACTCCTAAACAGCTCACTGACCTACGTT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
* * * *
9390896 CACAGCTAATATTGTAAAGGTTAGTTGATTTAAGATCGCA
66 CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
* *
9390936 ACTTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTGAATAGCT
1 ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCT
9390987 TACTGATATA
Statistics
Matches: 571, Mismatches: 97, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
103 95 0.17
104 85 0.15
105 298 0.52
106 90 0.16
107 1 0.00
108 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (105 bp):
ACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCAACTCCTAAATAGCTCGCTGACCTATGTT
CACAGCTGATATTATAAAGGTTAGCTGATTTAAGATTGCA
Found at i:9396175 original size:26 final size:26
Alignment explanation
Indices: 9396139--9396220 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
9396129 TTATACAAAT
9396139 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9396165 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9396191 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
9396217 TGAT
1 TGAT
9396221 TGGAATTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:9401150 original size:27 final size:29
Alignment explanation
Indices: 9401095--9401157 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 29
9401085 ACTAAAAGGG
* *
9401095 TATACATATATGTATAGTGATATTAGAAA
1 TATACATATATATATAGTAATATTAGAAA
*
9401124 TATAC-TATATATATA-TAATATTTGAAA
1 TATACATATATATATAGTAATATTAGAAA
9401151 TATACAT
1 TATACAT
9401158 GAAGTGATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 15 0.50
28 10 0.33
29 5 0.17
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (29 bp):
TATACATATATATATAGTAATATTAGAAA
Found at i:9401484 original size:21 final size:21
Alignment explanation
Indices: 9401454--9401493 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
9401444 ATTAATAATA
9401454 ATACTAATAT-TACATAAAGGT
1 ATACTAATATATAC-TAAAGGT
*
9401475 ATACTTATATATACTAAAG
1 ATACTAATATATACTAAAG
9401494 TTATGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (21 bp):
ATACTAATATATACTAAAGGT
Found at i:9401566 original size:3 final size:3
Alignment explanation
Indices: 9401552--9401661 Score: 86
Period size: 3 Copynumber: 36.7 Consensus size: 3
9401542 TACATAACAT
*
9401552 ATA ATA AAA ATA ATA AT- ATA CATA AT- ATA TATA A-A ATA CATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA -ATA -ATA
* * *
9401598 A-A AAA ACA TATA CT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
**
9401642 AGG ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
9401662 GTAAAAAAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
2 9 0.10
3 64 0.74
4 14 0.16
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:9401606 original size:14 final size:15
Alignment explanation
Indices: 9401576--9401615 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
9401566 AATATACATA
*
9401576 ATATATATAAAATAC
1 ATATATATAAAAAAC
9401591 ATATATA-AAAAAAC
1 ATATATATAAAAAAC
9401605 ATATACTATAA
1 ATATA-TATAA
9401616 TAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 11 0.50
15 9 0.41
16 2 0.09
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ATATATATAAAAAAC
Found at i:9405046 original size:17 final size:18
Alignment explanation
Indices: 9405014--9405048 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9405004 AAATTTTTGT
9405014 TTTTTGCCCTCAAATTTA
1 TTTTTGCCCTCAAATTTA
*
9405032 TTTTTGCCTTC-AATTTA
1 TTTTTGCCCTCAAATTTA
9405049 GTCCCTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.20, G:0.06, T:0.54
Consensus pattern (18 bp):
TTTTTGCCCTCAAATTTA
Found at i:9410528 original size:22 final size:20
Alignment explanation
Indices: 9410487--9410533 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
9410477 GAATCCACTA
9410487 TTTACATAATTATGTTTAAAGT
1 TTTACATAATTATG-TTAAA-T
9410509 TTTACATATATTTATG-TAAAT
1 TTTACATA-A-TTATGTTAAAT
9410530 TTTA
1 TTTA
9410534 ACACTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 5 0.22
22 12 0.52
23 1 0.04
24 5 0.22
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.53
Consensus pattern (20 bp):
TTTACATAATTATGTTAAAT
Found at i:9412727 original size:133 final size:131
Alignment explanation
Indices: 9412402--9412883 Score: 421
Period size: 133 Copynumber: 3.6 Consensus size: 131
9412392 TATTCAATTA
* * * * * * *
9412402 TTTTGAACAAACGGGAGATTGTAACCCGGCACGATAGGGCACTATTCCCCGAATTG-CTAAACAT
1 TTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCACGATT-CACGAATTGTC-AAACAT
* * ** * * * * *
9412466 CAAACATTTCTTTCATTTTAAAGAGTTTTTAGAAAACGTGAGTGAAATTCTGAAGGGATCTTCGA
64 CGAATATCGCCTTCGTTTTAAAGGGTTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGA
9412531 TCG
129 TCG
* * * * * ** *
9412534 TTTTGAACAAATGAAAAAACGCAACCCAGCACGGTAGGGTACGATTCTTGAATTGCCAAACATCG
1 TTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCACGAATTGTCAAACATCG
* * * ** * *
9412599 AACATCGCCTTTGTTTTAAAGGGTTTTCTTAAAAAACATGAGTGAAAACCTGAAGGAATATTTGA
66 AATATCGCCTTCGTTTTAAAGGG-TTT-TTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGA
9412664 TCG
129 TCG
* * * * * *
9412667 TTTTGAACAAACGAGAAATCACAACCCAGCACAATAGGGCATGATTCCCGAATTATCAAACACCG
1 TTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCACGAATTGTCAAACATCG
* * * * * *
9412732 AGTATTGCCTTCGTTTT-AAGGGATTTTTAGAAGACACGAGTGAAATTTTGAAGGGACCTTTGAT
66 AATATCGCCTTCGTTTTAAAGGG-TTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGAT
**
9412796 TA
130 CG
* * * * * *
9412798 CTTTGAGC-AACTGAGAAATTGCAACCCAACACGTTAGGGCACGATTCTACGAATTGTCAAATAT
1 TTTTGAACAAAC-GAGAAATCGCAACCCAGCACGATAGGGCACGATTC-ACGAATTGTCAAACAT
9412862 CGAATATCGCCTTCGTTTTAAA
64 CGAATATCGCCTTCGTTTTAAA
9412884 TATTTATGAA
Statistics
Matches: 274, Mismatches: 70, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
130 3 0.01
131 95 0.35
132 76 0.28
133 100 0.36
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (131 bp):
TTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCACGAATTGTCAAACATCG
AATATCGCCTTCGTTTTAAAGGGTTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTTGATC
G
Found at i:9415876 original size:24 final size:24
Alignment explanation
Indices: 9415849--9415895 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
9415839 CTGGTTATAG
*
9415849 GCTTATGGTCGCTTCTGGCTGTTA
1 GCTTATGGTCACTTCTGGCTGTTA
*
9415873 GCTTATGGTCATTTCTGGCTGTT
1 GCTTATGGTCACTTCTGGCTGTT
9415896 CGACTAACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.45
Consensus pattern (24 bp):
GCTTATGGTCACTTCTGGCTGTTA
Found at i:9417884 original size:24 final size:24
Alignment explanation
Indices: 9417722--9417884 Score: 80
Period size: 25 Copynumber: 6.6 Consensus size: 24
9417712 ACACACCACA
* * * *
9417722 GCTCTTACGAGCATCCCCATATTTG
1 GCTCTTATGAGCTTCCCGAT-TATG
* *
9417747 GCTCTAATGAGCTTCCCGTTATATG
1 GCTCTTATGAGCTTCCCGAT-TATG
* * *
9417772 GTTCTTGTGAGCTTCCCGATAACTG
1 GCTCTTATGAGCTTCCCGATTA-TG
* * *
9417797 GCTCCTATGAGCTTTCTGATTAATG
1 GCTCTTATGAGCTTCCCGATT-ATG
* * *
9417822 ACTCTCTA-GAGTTTCCTGA-TATTG
1 GCTCT-TATGAGCTTCCCGATTA-TG
* * *
9417846 GCTCACT-TGAACTTCCCGATTACG
1 GCTC-TTATGAGCTTCCCGATTATG
9417870 GCTCTTATGAGCTTC
1 GCTCTTATGAGCTTC
9417885 TTGTTATACA
Statistics
Matches: 101, Mismatches: 29, Indels: 17
0.69 0.20 0.12
Matches are distributed among these distances:
23 2 0.02
24 28 0.28
25 68 0.67
26 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCCGATTATG
Found at i:9434858 original size:6 final size:6
Alignment explanation
Indices: 9434844--9434902 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
9434834 TGATATAGAC
* * * *
9434844 TCAGTT TCAGAT TCAGAT TTAGAT ATCATAT TCAGAT TCAGAT AGCAGAT
1 TCAGAT TCAGAT TCAGAT TCAGAT -TCAGAT TCAGAT TCAGAT -TCAGAT
*
9434894 TCATAT TCA
1 TCAGAT TCA
9434903 AATAGCAGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
6 34 0.79
7 9 0.21
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (6 bp):
TCAGAT
Found at i:9434895 original size:19 final size:19
Alignment explanation
Indices: 9434851--9434912 Score: 79
Period size: 19 Copynumber: 3.3 Consensus size: 19
9434841 GACTCAGTTT
* *
9434851 CAGATTCAGATTTAGATAT
1 CAGATTCAGATTCAGATAG
*
9434870 CATATTCAGATTCAGATAG
1 CAGATTCAGATTCAGATAG
* *
9434889 CAGATTCATATTCAAATAG
1 CAGATTCAGATTCAGATAG
9434908 CAGAT
1 CAGAT
9434913 ATGCCAAGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (19 bp):
CAGATTCAGATTCAGATAG
Found at i:9434897 original size:25 final size:25
Alignment explanation
Indices: 9434849--9434902 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
9434839 TAGACTCAGT
**
9434849 TTCAGATTCAGATTTAGATATCATA
1 TTCAGATTCAGATGCAGATATCATA
9434874 TTCAGATTCAGATAGCAGAT-TCATA
1 TTCAGATTCAGAT-GCAGATATCATA
9434899 TTCA
1 TTCA
9434903 AATAGCAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (25 bp):
TTCAGATTCAGATGCAGATATCATA
Found at i:9437742 original size:21 final size:21
Alignment explanation
Indices: 9437694--9437734 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
9437684 TCATAAAGCT
9437694 TATTTATATTTTAATTAATCA
1 TATTTATATTTTAATTAATCA
9437715 TATTT-TAATTTTAATTAATC
1 TATTTAT-ATTTTAATTAATC
9437735 CTCATTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTATATTTTAATTAATCA
Found at i:9440314 original size:26 final size:26
Alignment explanation
Indices: 9440256--9440307 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
9440246 TTTTAACTAA
* *
9440256 AATTAAGTTGAATTAGAGAATATATT
1 AATTAAATTGAATTAGAAAATATATT
*
9440282 AATTAAATTGAATTATAAAATATATT
1 AATTAAATTGAATTAGAAAATATATT
9440308 TTTTAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (26 bp):
AATTAAATTGAATTAGAAAATATATT
Found at i:9441558 original size:136 final size:135
Alignment explanation
Indices: 9441315--9441586 Score: 483
Period size: 136 Copynumber: 2.0 Consensus size: 135
9441305 GCTTCGAGAA
*
9441315 ATGTCAAGTTGGTTAATTGCATTGGATTCTTCCTTGAAGCTTGTTTGATGAGAGGTCCAATGATT
1 ATGTCAAGTTGGTTAATTGCATTGAATTCTTCCTTGAAGCTTGTTTGATGAGAGGTCCAATGATT
9441380 CAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTCGT
66 CAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTCGT
9441445 TTATG
131 TTATG
*
9441450 ATGTCAAGTTGGTTAATTGCATTAGAATTCTTCCTTGAAGCTTGTTTGATGA-AGGATTCAATGA
1 ATGTCAAGTTGGTTAATTGCATT-GAATTCTTCCTTGAAGCTTGTTTGATGAGAGG-TCCAATGA
* *
9441514 TTCAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATGTGCCACAACTAGAATAGGTCCTAAATTC
64 TTCAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTC
9441579 GTTTATG
129 GTTTATG
9441586 A
1 A
9441587 ATCTATTTAC
Statistics
Matches: 131, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
135 26 0.20
136 105 0.80
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (135 bp):
ATGTCAAGTTGGTTAATTGCATTGAATTCTTCCTTGAAGCTTGTTTGATGAGAGGTCCAATGATT
CAAGTGCCGCCAATTTTTCAAGTGAAGGTGGGATATGCCACAACTAGAATAGGTCATAAATTCGT
TTATG
Found at i:9444302 original size:18 final size:19
Alignment explanation
Indices: 9444281--9444316 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9444271 TCAGTTTTAT
*
9444281 TAAACAC-AATGTTTTTCC
1 TAAACACGAATGATTTTCC
9444299 TAAACACGAATGATTTTC
1 TAAACACGAATGATTTTC
9444317 TTTAAATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (19 bp):
TAAACACGAATGATTTTCC
Found at i:9458093 original size:47 final size:47
Alignment explanation
Indices: 9458030--9458673 Score: 965
Period size: 47 Copynumber: 13.6 Consensus size: 47
9458020 CCCTTCGGGA
* * *
9458030 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9458077 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9458124 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9458171 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9458218 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
9458265 CTTGTCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9458312 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* **
9458359 CTTATCACACATACGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
9458406 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9458455 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9458502 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9458549 CTTGTCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9458598 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9458647 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9458674 TATTCAAATA
Statistics
Matches: 564, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 427 0.76
49 135 0.24
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:9460186 original size:56 final size:56
Alignment explanation
Indices: 9460119--9460238 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
9460109 TATTAGTTTA
9460119 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
9460175 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
9460231 TTGCCCAT
1 TTGCCCAT
9460239 CATCCCTTGC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:9470948 original size:862 final size:862
Alignment explanation
Indices: 9469285--9475321 Score: 11849
Period size: 862 Copynumber: 7.0 Consensus size: 862
9469275 AGATTTAAAT
9469285 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9469350 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
*
9469415 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGGCTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9469480 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
* *
9469545 GTGTTTTAAACCCCTCATGGTGTGTGGGGATGATCGGAGATGGTATGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
*
9469610 GTACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
9469675 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
*
9469740 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGTTTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9469805 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
** *
9469870 AACGGAGGACTTAACGGGGTCTACATGTATATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
*
9469935 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGATGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
9470000 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9470065 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
9470130 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9470147 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9470212 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9470277 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9470342 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9470407 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
*
9470472 ATACTGGTTTTTGTTACTATATGCTTACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
9470537 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9470602 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9470667 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
9470732 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9470797 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
* *
9470862 TTTTAATTGTTTTCATGAACTTTTGAATTGTAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9470927 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
9470992 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9471009 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
*
9471074 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTTTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9471139 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9471204 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9471269 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
9471334 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
9471399 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9471464 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9471529 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
9471594 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9471659 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
9471724 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9471789 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
9471854 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9471871 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9471936 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
*
9472001 ATTAGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9472066 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9472131 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
*
9472196 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAATGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
*
9472261 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAACC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9472326 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9472391 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
*
9472456 AACGGAGGACTTAACGGTATCTACATGTTTAGCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9472521 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
9472586 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9472651 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
9472716 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9472733 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9472798 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9472863 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9472928 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9472993 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
9473058 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
*
9473123 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAACC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9473188 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9473253 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
*
9473318 AACGGAGGACTTAACGGTATCTACATGTTTAGCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9473383 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
9473448 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9473513 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
9473578 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9473595 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9473660 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9473725 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9473790 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9473855 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
9473920 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
*
9473985 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAACC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9474050 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9474115 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
*
9474180 AACGGAGGACTTAACGGTATCTACATGTTTAGCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9474245 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
9474310 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9474375 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
9474440 TAAAACGATTCAAATTA
846 TAAAACGATTCAAATTA
9474457 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
1 ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
9474522 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
66 CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
9474587 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
131 ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
9474652 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
196 AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
9474717 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
261 GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
*
9474782 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGAGCTAAGGTCCTAATTTATATATG
326 ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
9474847 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
391 AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
9474912 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
456 TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
9474977 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
521 TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
9475042 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
586 AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
9475107 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
651 CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
* *
9475172 TTTTAATTGTTTTCATGAATTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
716 TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
9475237 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
781 TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
*
9475302 TAAAATGATTCAAATTA
846 TAAAACGATTCAAATTA
9475319 ATG
1 ATG
9475322 AGCAAATAAT
Statistics
Matches: 5146, Mismatches: 29, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
862 5146 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (862 bp):
ATGTGATGTATGTATTAAGCATGTTAATTTATGCATGTTTACTGATCTGCATGTATGACTGATAA
CTGAATTTTAGCATGTAAGCATGTATTCCTATATATCTGTATTGAGCATGTCTAGTTGCATCTGC
ATTGGGGTGGCATAATTGATTATTGGAGGAAGCGTACTGGAAGACTTTCATGCCTATTATCTAGC
AGCTCAGCTACAATATTACTGATATATGCCGCATTTGGTACGACCTAGTGTGTAGGGCTGGGTGG
GTGTTTTAAACCCCACATGGTGTGTGGGGATGATCGGAGATGGTGTGTAGAGGCTGGTGGGTAGG
ATACTGGTTTTTGTTACTATATGCATACTGTATTTGAGAAGGGCTAAGGTCCTAATTTATATATG
AAACTGTATCTGAATAAGCTAAGGCCTAAACTGTATCTATATTTGTAATGGACTTAGGCCCAGCC
TGCATTTAACTGATGACTGTTGTTTGACTGTATGCATGTCTTCTGTGGGGATTACACACTGAGTT
TACATAAACTCACCCCTTTCTATTTTAACTGTATAGGTAATCCCCAAACTTAGAAGGACCTGTGC
AACGGAGGACTTAACGGTATCTACATGTTTATCGCCATACTTAAACTTCATTTATGGTTTTTAAT
CTTTATTCTTATGGGTTATTTTTTATGTAATTTGGGACTTTTGGACGGTTTGCATTTATTTTGGA
TTTTAACTGTTTTCATGAACTTTTGAATTGCAATGAAAACTCAGTTTTATTAAATACAACGTTTT
TCCTAAACGCGAATGATTTTCTTTAAATATCACAGTTTTAAAAGCTTCGGCTACAGAATATGTTT
TAAAACGATTCAAATTA
Found at i:9475796 original size:24 final size:23
Alignment explanation
Indices: 9475769--9475831 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 23
9475759 TAATCAACCT
9475769 TTCACTTGTCATCTTCCTTAACTC
1 TTCACTT-TCATCTTCCTTAACTC
*
9475793 TTCACCTATCATCTTCCTTAACTC
1 TTCA-CTTTCATCTTCCTTAACTC
9475817 TTCACCTTTCATCTT
1 TTCA-CTTTCATCTT
9475832 ATTGTAACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 34 0.94
25 2 0.06
ACGTcount: A:0.17, C:0.35, G:0.02, T:0.46
Consensus pattern (23 bp):
TTCACTTTCATCTTCCTTAACTC
Found at i:9483695 original size:16 final size:16
Alignment explanation
Indices: 9483674--9483721 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
9483664 TTTGGTTCCC
9483674 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9483690 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
9483706 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
9483722 CGTAATAGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.38, T:0.33
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:9483726 original size:16 final size:16
Alignment explanation
Indices: 9483674--9483727 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
9483664 TTTGGTTCCC
*
9483674 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
9483690 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
9483706 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
*
9483722 CGTAAT
1 TGTAAT
9483728 AGCAAATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.30, C:0.02, G:0.35, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:9483770 original size:45 final size:44
Alignment explanation
Indices: 9483706--9483800 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 44
9483696 GGATTAGAGG
*
9483706 TGTAATGGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
9483751 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
9483795 TGTAAT
1 TGTAAT
9483801 AGAGGTGTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 18 0.39
45 28 0.61
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:9483977 original size:18 final size:17
Alignment explanation
Indices: 9483956--9483990 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
9483946 TTATTATTTA
9483956 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
9483974 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
9483991 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:9484120 original size:147 final size:143
Alignment explanation
Indices: 9483881--9484149 Score: 459
Period size: 147 Copynumber: 1.9 Consensus size: 143
9483871 ATGATTATTG
9483881 TTATTGTTATTTAAATTTTAATAAATAATATCAAAAATAAATAATTTAATCATATTTAAACATAA
1 TTATTGTTATTTAAATTTTAATAAATAATATCAAAAATAAATAATTTAATCATATTTAAACATAA
* *
9483946 TTATTATTTAATATATTTTAATTAAAATATATATTTTAATAAAATTCTTAATAATTAGCAGAAAT
66 TTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAAT
9484011 TTGTTTTGGTAAA
131 TTGTTTTGGTAAA
*
9484024 TTATT-TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
1 TTATTGTTATTTAAATTTTAAT-A-A--A-TAATATCAAAAATAAATAATTTAATCATATTTAAA
9484088 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
61 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
9484150 ATATTCTTAT
Statistics
Matches: 118, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
142 16 0.14
143 6 0.05
144 1 0.01
146 1 0.01
147 94 0.80
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (143 bp):
TTATTGTTATTTAAATTTTAATAAATAATATCAAAAATAAATAATTTAATCATATTTAAACATAA
TTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAAT
TTGTTTTGGTAAA
Found at i:9484124 original size:18 final size:17
Alignment explanation
Indices: 9484103--9484137 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9484093 TTATTATTAA
*
9484103 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
9484121 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
9484138 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:9484181 original size:54 final size:54
Alignment explanation
Indices: 9484123--9484301 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
9484113 ATTAAAATAT
*
9484123 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
9484177 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
9484240 TAT
53 -AC
*
9484243 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
9484297 ATAAT
1 ATAAT
9484302 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:9484222 original size:120 final size:120
Alignment explanation
Indices: 9484086--9484378 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
9484076 ATCATATTTA
9484086 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
9484151 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAA-AT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATA-AAATAT
* *
9484206 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
9484271 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATAAAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATAAAA-TAT
* * *
9484327 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
9484379 TAAAATTATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATAAAATAT
Found at i:9484244 original size:18 final size:17
Alignment explanation
Indices: 9484223--9484257 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9484213 TTATTATTAA
9484223 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
9484241 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
9484258 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:9484372 original size:18 final size:17
Alignment explanation
Indices: 9484333--9484364 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9484323 TTTTAAATAA
9484333 TTAATATTAAATATATT
1 TTAATATTAAATATATT
9484350 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
9484365 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:9484468 original size:91 final size:91
Alignment explanation
Indices: 9484389--9484601 Score: 241
Period size: 91 Copynumber: 2.3 Consensus size: 91
9484379 TAAAATTATT
* * * *
9484389 ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTT
1 ATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTT
9484453 AATAATAATATAAAATTTCATAAAATTC
64 AATAATAATATAAAATTTCATAAAATTC
* * * *
9484481 TTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAA
1 ATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAA
* * * * *
9484546 TAGTGATATATAATTTCATGAAATTG
66 TAATAATATAAAATTTCATAAAATTC
* *
9484572 TTAATAATAAAATGT-TCTTATATGAATTTA
1 ATAATAAT-AAAT-TATATTATATGAATTTA
9484602 CTAAAATCAA
Statistics
Matches: 104, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
91 79 0.76
92 24 0.23
93 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.45
Consensus pattern (91 bp):
ATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAA
TAATAATATAAAATTTCATAAAATTC
Found at i:9485130 original size:12 final size:12
Alignment explanation
Indices: 9485115--9485144 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9485105 AATACAAACA
9485115 ACAGAAGCTGCT
1 ACAGAAGCTGCT
9485127 ACAGAAGCTGCT
1 ACAGAAGCTGCT
*
9485139 AAAGAA
1 ACAGAA
9485145 ATTAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (12 bp):
ACAGAAGCTGCT
Found at i:9490753 original size:81 final size:81
Alignment explanation
Indices: 9490618--9490779 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
9490608 TATTAGTTGT
9490618 ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCAGG
1 ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCAGG
9490683 ATAATCATATAAAAAA
66 ATAATCATATAAAAAA
*
9490699 ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCATG
1 ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCAGG
9490764 ATAATCATATAAAAAA
66 ATAATCATATAAAAAA
9490780 GGGCATGACT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.49, C:0.19, G:0.08, T:0.24
Consensus pattern (81 bp):
ATAAGACAATTTAACTTAAAGACGCATAGAAACAATCCTAATCAAACCTTCTCCAATGAATCAGG
ATAATCATATAAAAAA
Found at i:9491959 original size:16 final size:17
Alignment explanation
Indices: 9491921--9491952 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9491911 CCGGTTTTTT
9491921 ATTTAA-TTTTTAAATA
1 ATTTAATTTTTTAAATA
9491937 ATTTAATTTTTTAAAT
1 ATTTAATTTTTTAAAT
9491953 TTTTAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTAATTTTTTAAATA
Found at i:9501065 original size:19 final size:19
Alignment explanation
Indices: 9501041--9501077 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9501031 CGCATGTAAT
*
9501041 ATAATATTTAAATATTGAC
1 ATAATATATAAATATTGAC
*
9501060 ATAATATATACATATTGA
1 ATAATATATAAATATTGA
9501078 AAAAAAATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAATATATAAATATTGAC
Found at i:9501241 original size:13 final size:14
Alignment explanation
Indices: 9501211--9501239 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9501201 ATATATGGTT
9501211 AATAGAAATAAAAA
1 AATAGAAATAAAAA
9501225 AATAGAAATAAAAA
1 AATAGAAATAAAAA
9501239 A
1 A
9501240 TATACACGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
AATAGAAATAAAAA
Found at i:9501849 original size:9 final size:9
Alignment explanation
Indices: 9501819--9501851 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
9501809 ACACTAAGAC
9501819 ATATAATAA
1 ATATAATAA
*
9501828 ATACAATAA
1 ATATAATAA
9501837 ATATAATAA
1 ATATAATAA
9501846 ATATAA
1 ATATAA
9501852 ATATTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (9 bp):
ATATAATAA
Found at i:9501851 original size:15 final size:16
Alignment explanation
Indices: 9501819--9501870 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
9501809 ACACTAAGAC
9501819 ATATAATAAATACAATAA
1 ATATAATAAAT--AATAA
9501837 ATATAATAAAT-ATAA
1 ATATAATAAATAATAA
* *
9501852 ATATTATAATTAATAA
1 ATATAATAAATAATAA
9501868 ATA
1 ATA
9501871 ACAGAAAGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 13 0.42
16 7 0.23
18 11 0.35
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAATAAATAATAA
Found at i:9501859 original size:18 final size:18
Alignment explanation
Indices: 9501819--9501868 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
9501809 ACACTAAGAC
*
9501819 ATATAATAAATACAATAA
1 ATATAATAAATAAAATAA
9501837 ATATAATAAATATAAAT-A
1 ATATAATAAATA-AAATAA
* *
9501855 TTATAATTAATAAA
1 ATATAATAAATAAA
9501869 TAACAGAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 2 0.07
18 23 0.82
19 3 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATAATAAATAAAATAA
Found at i:9506680 original size:16 final size:15
Alignment explanation
Indices: 9506644--9506682 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
9506634 GGGGGAAACG
*
9506644 GAATAGGGTTGTAAT
1 GAATAGAGTTGTAAT
9506659 GAAATAGAGTTGTAAT
1 G-AATAGAGTTGTAAT
9506675 AGAATAGA
1 -GAATAGA
9506683 ACTGTAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (15 bp):
GAATAGAGTTGTAAT
Found at i:9507273 original size:45 final size:45
Alignment explanation
Indices: 9507208--9507294 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
9507198 GGTTGCAGAC
* *
9507208 ATCTCCACCTTCAACGTAATGGTTCCTCTTCTTCTTTAGACCGAT
1 ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACCGAT
* *
9507253 ATCTCCACCTTCGACATAATGGTTTCTCTTCTTCTTCAGACC
1 ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACC
9507295 ACCCAATGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.20, C:0.32, G:0.10, T:0.38
Consensus pattern (45 bp):
ATCTCCACCTTCAACATAATGGTTCCTCTTCTTCTTCAGACCGAT
Found at i:9508725 original size:11 final size:11
Alignment explanation
Indices: 9508709--9508736 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
9508699 ATCATATAAA
9508709 TTTTAAAATTC
1 TTTTAAAATTC
9508720 TTTTAAAATTC
1 TTTTAAAATTC
9508731 TTTTAA
1 TTTTAA
9508737 TTTTTCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATTC
Found at i:9508788 original size:29 final size:26
Alignment explanation
Indices: 9508739--9508795 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 26
9508729 TCTTTTAATT
9508739 TTTCTTATTTTCTTTTATATTATTTATC
1 TTTCTTATTTTCTTTTATATT-TTT-TC
*
9508767 TTTCTTTATTTT-TTTTCCTATTTTTTC
1 TTTC-TTATTTTCTTTT-ATATTTTTTC
9508794 TT
1 TT
9508796 CCTCCTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 4 0.15
28 11 0.42
29 11 0.42
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTCTTATTTTCTTTTATATTTTTTC
Found at i:9509089 original size:21 final size:21
Alignment explanation
Indices: 9509064--9509104 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9509054 ATTGAACCAA
*
9509064 TTTTATCTATTTTTTAAATAT
1 TTTTATCAATTTTTTAAATAT
*
9509085 TTTTATGAATTTTTTAAATA
1 TTTTATCAATTTTTTAAATA
9509105 ATTTATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTTATCAATTTTTTAAATAT
Found at i:9513227 original size:93 final size:93
Alignment explanation
Indices: 9513117--9513287 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
9513107 GCCCCTAAGT
* * *
9513117 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACAAGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACAAGGACTCAACTCAA
* *
9513182 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * **
9513210 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACAAGGACTCAACTCAA
9513275 CGAGCTCGGATGC
66 CGAGCTCGGATGC
9513288 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACAAGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:9513273 original size:46 final size:46
Alignment explanation
Indices: 9513112--9513284 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
9513102 AACCCGCCCC
* * *
9513112 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* ** * * * * *
9513158 TAAATGAACAAGGATTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
9513206 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
9513251 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
9513285 TGCTCAACCA
Statistics
Matches: 98, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.56
47 25 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:9523933 original size:40 final size:40
Alignment explanation
Indices: 9523888--9523968 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
9523878 AGAGTTAAGA
*
9523888 TAGATTGAGTTGAAATATTTATTTGTATAGTGAGAAGCTT
1 TAGATTGAGTTGAAATATTTATTTGTATAGTGAAAAGCTT
*
9523928 TAGATTGAGTTGAAATCTTTATTTGTATAGTGAAAAGCTT
1 TAGATTGAGTTGAAATATTTATTTGTATAGTGAAAAGCTT
9523968 T
1 T
9523969 CTCTAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (40 bp):
TAGATTGAGTTGAAATATTTATTTGTATAGTGAAAAGCTT
Found at i:9524368 original size:14 final size:12
Alignment explanation
Indices: 9524343--9524405 Score: 63
Period size: 12 Copynumber: 4.8 Consensus size: 12
9524333 TTAAATTTTA
9524343 TTTTTTTCTTAT
1 TTTTTTTCTTAT
9524355 TTTTTTTACATTAT
1 TTTTTTT-C-TTAT
*
9524369 TTATATTTCTTTAT
1 TT-TTTTTC-TTAT
*
9524383 TTTTTTTCCTAT
1 TTTTTTTCTTAT
9524395 TTTTTCTTCTT
1 TTTTT-TTCTT
9524406 CCTTTATAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
12 15 0.36
13 10 0.24
14 13 0.31
15 4 0.10
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTTTCTTAT
Found at i:9538321 original size:19 final size:17
Alignment explanation
Indices: 9538284--9538324 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
9538274 AACTTTATAA
9538284 TTTATTTTTTTAATTCT
1 TTTATTTTTTTAATTCT
*
9538301 TTTATTTTTCTTATTTTCT
1 TTTATTTTT-TTA-ATTCT
9538320 TTTAT
1 TTTAT
9538325 ATTATTTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 3 0.14
19 9 0.43
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTATTTTTTTAATTCT
Found at i:9541494 original size:3 final size:3
Alignment explanation
Indices: 9541486--9541514 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9541476 ATAGTGGTCG
9541486 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
9541515 GAGAGGAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:9547892 original size:24 final size:24
Alignment explanation
Indices: 9547860--9547905 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
9547850 AAATTCAATT
9547860 AAAAGAGAACTAAAAAAAAATTTGG
1 AAAAGAGAA-TAAAAAAAAATTTGG
**
9547885 AAAA-AGAATAAAGGAAAATTT
1 AAAAGAGAATAAAAAAAAATTT
9547906 TAAATTACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 4 0.21
25 4 0.21
ACGTcount: A:0.65, C:0.02, G:0.15, T:0.17
Consensus pattern (24 bp):
AAAAGAGAATAAAAAAAAATTTGG
Found at i:9552004 original size:43 final size:44
Alignment explanation
Indices: 9551955--9552121 Score: 182
Period size: 43 Copynumber: 3.9 Consensus size: 44
9551945 GATTACCAAG
* * *
9551955 ATGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* *
9551999 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * * * *
9552041 ATATGATTTCGTATAAGAGCC-TATCTGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGA-CCATATCTGGGACATTGGCATCGTAT
* *
9552084 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
9552122 TGTACGAGCT
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 9 0.09
43 94 0.90
44 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Done.