Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 39 of 253
Found at i:9986448 original size:23 final size:24
Alignment explanation
Indices: 9986408--9986463 Score: 87
Period size: 23 Copynumber: 2.3 Consensus size: 24
9986398 CTGGAGGCTT
9986408 AGCCTCTTTGAATAACTGGGGCAAA
1 AGCC-CTTTGAATAACTGGGGCAAA
*
9986433 AGCCCTTT-AATAACTGGGGCATA
1 AGCCCTTTGAATAACTGGGGCAAA
9986456 AGCCCTTT
1 AGCCCTTT
9986464 TTCACTTCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 22 0.73
24 4 0.13
25 4 0.13
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AGCCCTTTGAATAACTGGGGCAAA
Found at i:9986539 original size:20 final size:20
Alignment explanation
Indices: 9986514--9986580 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
9986504 TTATGATTAC
9986514 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
9986534 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9986554 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9986574 ACCATGT
1 ATCATGT
9986581 TTATCAACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9986545 original size:11 final size:11
Alignment explanation
Indices: 9986514--9986569 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
9986504 TTATGATTAC
9986514 ATCATGTGCAT
1 ATCATGTGCAT
*
9986525 ATCA--TACAT
1 ATCATGTGCAT
9986534 ATCATGTGCAT
1 ATCATGTGCAT
*
9986545 ATCA--TACAT
1 ATCATGTGCAT
*
9986554 GTCATGTGCAT
1 ATCATGTGCAT
9986565 ATCAT
1 ATCAT
9986570 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:9986595 original size:17 final size:19
Alignment explanation
Indices: 9986524--9986602 Score: 58
Period size: 20 Copynumber: 4.2 Consensus size: 19
9986514 ATCATGTGCA
*
9986524 TATCATACATATCATGTGCA-
1 TATCATACATACCATGT--AT
**
9986544 TATCATACATGTCATGTGCA-
1 TATCATACATACCATGT--AT
9986564 TATCATACATACCATGT-T
1 TATCATACATACCATGTAT
*
9986582 TATCA-ACATCCCATGTAT
1 TATCATACATACCATGTAT
9986600 TAT
1 TAT
9986603 ATTCATACAT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
17 10 0.19
18 9 0.17
20 34 0.64
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (19 bp):
TATCATACATACCATGTAT
Found at i:9986602 original size:18 final size:18
Alignment explanation
Indices: 9986564--9986602 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
9986554 GTCATGTGCA
9986564 TATCATACATACCATGTT
1 TATCATACATACCATGTT
*
9986582 TATCA-ACATCCCATGTAT
1 TATCATACATACCATGT-T
9986600 TAT
1 TAT
9986603 ATTCATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (18 bp):
TATCATACATACCATGTT
Found at i:9986663 original size:25 final size:25
Alignment explanation
Indices: 9986617--9986664 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
9986607 ATACATAATC
* * * *
9986617 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
9986642 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
9986665 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:9987879 original size:6 final size:5
Alignment explanation
Indices: 9987850--9987925 Score: 61
Period size: 6 Copynumber: 14.8 Consensus size: 5
9987840 TATGTCTTTC
*
9987850 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT AAAAAGT AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
9987898 AAAAGT AAAAT AAAA- AAAAT AAAA- AAAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AAAA
9987926 GAATAAAAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
3 3 0.05
4 8 0.13
5 22 0.36
6 27 0.44
7 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:9987901 original size:11 final size:11
Alignment explanation
Indices: 9987881--9987921 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
9987871 AATGAAAATA
9987881 AAAATAAAAAGT
1 AAAAT-AAAAGT
9987893 AAAATAAAAGT
1 AAAATAAAAGT
9987904 AAAATAAAA--
1 AAAATAAAAGT
9987913 AAAATAAAA
1 AAAATAAAA
9987922 AAAAGAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.31
11 15 0.52
12 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (11 bp):
AAAATAAAAGT
Found at i:9987921 original size:8 final size:9
Alignment explanation
Indices: 9987875--9987925 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
9987865 AATTGAAATG
9987875 AAAATAAAA
1 AAAATAAAA
**
9987884 ATAAA-AAGT
1 A-AAATAAAA
9987893 AAAATAAAA
1 AAAATAAAA
9987902 GTAAAATAAAA
1 --AAAATAAAA
9987913 AAAATAAAA
1 AAAATAAAA
9987922 AAAA
1 AAAA
9987926 GAATAAAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
8 3 0.09
9 19 0.56
10 3 0.09
11 9 0.26
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (9 bp):
AAAATAAAA
Found at i:9987923 original size:11 final size:11
Alignment explanation
Indices: 9987870--9987934 Score: 53
Period size: 12 Copynumber: 5.8 Consensus size: 11
9987860 AATAAAATTG
*
9987870 AAATGAAAATAA
1 AAAT-AAAAAAA
*
9987882 AAATAAAAAGTA
1 AAATAAAAA-AA
**
9987894 AAATAAAAGTA
1 AAATAAAAAAA
9987905 AAAT--AAAAA
1 AAATAAAAAAA
9987914 AAATAAAAAAA
1 AAATAAAAAAA
9987925 AGAATAAAAA
1 A-AATAAAAA
9987935 GATAGGAGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 7 0.16
11 16 0.36
12 21 0.48
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (11 bp):
AAATAAAAAAA
Found at i:9993317 original size:13 final size:13
Alignment explanation
Indices: 9993295--9993327 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9993285 AAGGCTTTGT
9993295 TTAT-TAAACTAA
1 TTATCTAAACTAA
9993307 TTATCTAAACTAA
1 TTATCTAAACTAA
*
9993320 TTAACTAA
1 TTATCTAA
9993328 TTTAACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:9998372 original size:24 final size:25
Alignment explanation
Indices: 9998335--9998381 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
9998325 ATTTTCCAAG
*
9998335 TTCCATTACTTATTCCACTAAAAGT
1 TTCCATTACATATTCCACTAAAAGT
* *
9998360 TTCCATT-CATATTTCAGTAAAA
1 TTCCATTACATATTCCACTAAAA
9998382 TTGGGCCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.40
Consensus pattern (25 bp):
TTCCATTACATATTCCACTAAAAGT
Found at i:10003998 original size:55 final size:54
Alignment explanation
Indices: 10003852--10004048 Score: 236
Period size: 55 Copynumber: 3.6 Consensus size: 54
10003842 GAACTAAGAT
* * * * *
10003852 AAGGATATCATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
10003906 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTGTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
10003961 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
10004014 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
10004049 ATGGTAAGTT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:10004060 original size:53 final size:54
Alignment explanation
Indices: 10003852--10004059 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
10003842 GAACTAAGAT
* * * *
10003852 AAGGATATCATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * *
10003906 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTGTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
10003961 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
10004014 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
10004060 AAAAAGGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 40 0.31
55 41 0.32
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:10004073 original size:108 final size:110
Alignment explanation
Indices: 10003860--10004084 Score: 287
Period size: 108 Copynumber: 2.1 Consensus size: 110
10003850 ATAAGGATAT
*
10003860 CATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
* * ** *
10003925 ATGTCAAGACATGGCATTGATGAGTTACTGTAAAGCAAAGG-TCC
66 ATGTCAAGACATGGCAATGATAAGTTACTAAAAAGAAAAGGTTCC
* * * * *
10003969 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*
10004033 ATGTCAAGACATGGCAATGGTAAGTT-C-AAAAAGGAAAAAGGTTCC
66 ATGTCAAGACATGGCAATGATAAGTTACTAAAAA-G-AAAAGGTTCC
*
10004078 CAAGTAA
1 CATGTAA
10004085 TCCAAAGAAT
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
106 3 0.03
107 2 0.02
108 52 0.52
109 43 0.43
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCAAGGCAGTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTAAAAAGAAAAGGTTCC
Found at i:10021987 original size:16 final size:17
Alignment explanation
Indices: 10021960--10021993 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10021950 CTAAACTCCC
*
10021960 TAAATACCTAAGAGAGA
1 TAAATACCTAAGACAGA
10021977 TAAAT-CCTAAGACAGA
1 TAAATACCTAAGACAGA
10021993 T
1 T
10021994 CTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (17 bp):
TAAATACCTAAGACAGA
Found at i:10024514 original size:23 final size:23
Alignment explanation
Indices: 10024455--10024526 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
10024445 AAATATGATG
10024455 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAACATAA
* * *
10024478 TATTAAAGTGTAAAATAACATAA
1 TAATAAAATATAAAATAACATAA
**
10024501 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAACATAA
10024524 TAA
1 TAA
10024527 ATATTATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 13 0.32
23 27 0.68
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (23 bp):
TAATAAAATATAAAATAACATAA
Found at i:10024546 original size:24 final size:25
Alignment explanation
Indices: 10024514--10024579 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
10024504 TAAAATATAA
* *
10024514 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
10024539 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
10024565 AATAATAT-ATAAATA
1 AATAATATAATAAATA
10024580 AAGTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:10026344 original size:88 final size:87
Alignment explanation
Indices: 10026252--10026534 Score: 274
Period size: 88 Copynumber: 3.2 Consensus size: 87
10026242 GCTTTCTGAC
*
10026252 AATACAGAGATGTCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
1 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC-TGAAAGCCAAATCAGCTA
*
10026317 TGTCTTCGATCTACTCCCTGTCG
65 TGTCTTCGATCTGCTCCCTGTCG
* * * * * *
10026340 AATACAGAGATGCCAAATCTACTATCTTTGATCTG-TTC-TC-TGACAATACAGAGATGCCAAAT
1 AATACAGAGATGCCAAA--T-C-ATCTTAGATTTGCTTCAACGT-A-AACACTGA-AAGCCAAAT
* * *
10026402 CTGC--TGTCTTCGATCTGCTCTCTGAC-
59 CAGCTATGTCTTCGATCTGCTCCCTGTCG
** * *
10026428 AATACAGAGACACCAAATCATCTTAGATTTCCTTCAATGTAAACACATGAAAGCCAAATCAGCTA
1 AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC-TGAAAGCCAAATCAGCTA
10026493 TGTCTTCGATCTGCTCTCC-GTCG
65 TGTCTTCGATCTGCTC-CCTGTCG
**
10026516 AATATGGAGATGCCAAATC
1 AATACAGAGATGCCAAATC
10026535 TGTTTCTTTG
Statistics
Matches: 152, Mismatches: 28, Indels: 30
0.72 0.13 0.14
Matches are distributed among these distances:
84 9 0.06
85 19 0.12
86 4 0.03
87 19 0.12
88 47 0.31
89 20 0.13
90 5 0.03
91 19 0.12
92 10 0.07
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (87 bp):
AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACTGAAAGCCAAATCAGCTAT
GTCTTCGATCTGCTCCCTGTCG
Found at i:10026446 original size:44 final size:44
Alignment explanation
Indices: 10026135--10026446 Score: 246
Period size: 44 Copynumber: 7.1 Consensus size: 44
10026125 CAGGAACAAC
* * * *
10026135 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGACGCTA
1 AATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* *
10026179 AATATG-TCATCTTCGATTTGCTCTCTGACAATACAGAGACGCCA
1 AATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* * * *
10026223 AATCTG-TCATCTTTGATCTGCTTTCTGACAATACAGAGATGTCA
1 AATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* * * * *
10026267 AA--T-C-ATCTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGAC--AATACA-GAG-ACGCCA
* * * * *
10026308 AATCAGCTATGTCTTCGATCTACTCCCTGTCGAATACAGAGATGCCA
1 AATCTGCTA--TCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCA
* * * *
10026355 AATCTACTATCTTTGATCTGTTCTCTGACAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
* *
10026399 AATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGACACCA
1 AATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
10026443 AATC
1 AATC
10026447 ATCTTAGATT
Statistics
Matches: 213, Mismatches: 40, Indels: 30
0.75 0.14 0.11
Matches are distributed among these distances:
38 2 0.01
39 5 0.02
40 16 0.08
41 6 0.03
42 1 0.00
43 1 0.00
44 135 0.63
45 16 0.08
47 22 0.10
48 5 0.02
49 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCA
Found at i:10026472 original size:176 final size:175
Alignment explanation
Indices: 10026146--10026577 Score: 555
Period size: 176 Copynumber: 2.5 Consensus size: 175
10026136 ATCTGTTATT
* * * * * * * * * *
10026146 TTCGATCTGCTCTCTG-CCAATACAGAGACGCTAAATATGTCATCTTCGATTTGCTCTCTGACAA
1 TTCGATCTACTCTCCGTCGAATACAGAGATGCCAAATCTCT-ATCTTTGATCTGTTCTCTGACAA
* * * ***
10026210 TACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTTCTGACAATACAGAGATGTCAAATCATCT
65 TACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCT
* *
10026275 TAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTC
130 TAGATTTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTC
10026321 TTCGATCTACTC-CCTGTCGAATACAGAGATGCCAAATCTACTATCTTTGATCTGTTCTCTGACA
1 TTCGATCTACTCTCC-GTCGAATACAGAGATGCCAAATCT-CTATCTTTGATCTGTTCTCTGACA
*
10026385 ATACAGAGATGCCAAATCTG-CTGTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAT
64 ATACAGAGATGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAT
*
10026449 CTTAGATTTCCTTCAATGTAAACACATGAAAGCCAAATCAGCTATGTC
128 CTTAGATTTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTC
* ** * * * *
10026497 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAGT
1 TTCGATCTACTCTCCGTCGAATACAGAGATGCCAAATCTCTATCTTTGATCTGTTCTCTGACAAT
*
10026562 TCAGAGATGCCAAATC
66 ACAGAGATGCCAAATC
10026578 ATCTTAGATC
Statistics
Matches: 224, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
174 1 0.00
175 50 0.22
176 170 0.76
177 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (175 bp):
TTCGATCTACTCTCCGTCGAATACAGAGATGCCAAATCTCTATCTTTGATCTGTTCTCTGACAAT
ACAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTT
AGATTTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTC
Found at i:10026603 original size:131 final size:132
Alignment explanation
Indices: 10026390--10026639 Score: 367
Period size: 131 Copynumber: 1.9 Consensus size: 132
10026380 TGACAATACA
10026390 GAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGA
1 GAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGA
* *
10026455 TTTCCTTCAATGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAATA
66 TCTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAATA
10026520 TG
131 TG
* * * * * * **
10026522 GAGATGCCAAATCTG-TTTCTTTGATTTGTTCTCTGACAGTTCAGAGATGCCAAATCATCTTAGA
1 GAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGA
* * * *
10026586 TCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTC
66 TCTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTC
10026640 CTTGTAAACG
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
131 89 0.86
132 15 0.14
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
GAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGA
TCTCCTTCAACGTAAACACATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCCGTCGAATA
TG
Found at i:10027794 original size:23 final size:22
Alignment explanation
Indices: 10027767--10027840 Score: 89
Period size: 23 Copynumber: 3.4 Consensus size: 22
10027757 GGCCTCTCCA
10027767 TTTTTTATTTTTTATTTTTTCTC
1 TTTTTT-TTTTTTATTTTTTCTC
*
10027790 TTTTTTCTTTTTATTTTTTTCTC
1 TTTTTTTTTTTTA-TTTTTTCTC
* *
10027813 TTTTTCTTTTCT-TTTTTTC-C
1 TTTTTTTTTTTTATTTTTTCTC
10027833 TTTTTTTT
1 TTTTTTTT
10027841 GAAATAGAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.18
21 7 0.16
22 6 0.13
23 24 0.53
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTTTTTTTTATTTTTTCTC
Found at i:10027816 original size:8 final size:8
Alignment explanation
Indices: 10027782--10027819 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
10027772 TATTTTTTAT
10027782 TTTTTCTC
1 TTTTTCTC
10027790 TTTTT-TC
1 TTTTTCTC
* *
10027797 TTTTTATT
1 TTTTTCTC
10027805 TTTTTCTC
1 TTTTTCTC
10027813 TTTTTCT
1 TTTTTCT
10027820 TTTCTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTCTC
Found at i:10027820 original size:29 final size:28
Alignment explanation
Indices: 10027767--10027840 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
10027757 GGCCTCTCCA
10027767 TTTTTTATTTTTTATTTTTTCTCTTTT-T
1 TTTTTTATTTTTT-TTTTTTCTCTTTTCT
10027795 TCTTTTTATTTTTTTCTCTTTT-TCTTTTCT
1 T-TTTTTATTTTTTT-T-TTTTCTCTTTTCT
**
10027825 TTTTTTCCTTTTTTTT
1 TTTTTTATTTTTTTTT
10027841 GAAATAGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
27 1 0.03
28 3 0.08
29 30 0.75
30 6 0.15
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (28 bp):
TTTTTTATTTTTTTTTTTTCTCTTTTCT
Found at i:10027829 original size:7 final size:7
Alignment explanation
Indices: 10027767--10027838 Score: 58
Period size: 7 Copynumber: 9.9 Consensus size: 7
10027757 GGCCTCTCCA
*
10027767 TTTTTTA
1 TTTTTTC
*
10027774 TTTTTTAT
1 TTTTTT-C
10027782 TTTTTCTC
1 TTTTT-TC
10027790 TTTTTTC
1 TTTTTTC
10027797 TTTTTAT-
1 TTTTT-TC
10027804 TTTTTTC
1 TTTTTTC
10027811 TCTTTTTC
1 T-TTTTTC
10027819 TTTTCTT-
1 TTTT-TTC
*
10027826 TTTTTCC
1 TTTTTTC
10027833 TTTTTT
1 TTTTTT
10027839 TTGAAATAGA
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
6 2 0.04
7 31 0.57
8 20 0.37
9 1 0.02
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:10030370 original size:16 final size:17
Alignment explanation
Indices: 10030341--10030372 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10030331 AGTCGTGACC
10030341 CTCTTTTCTCTTTCTCT
1 CTCTTTTCTCTTTCTCT
10030358 CTCTTTT-TCTTTCTC
1 CTCTTTTCTCTTTCTC
10030373 ATTTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (17 bp):
CTCTTTTCTCTTTCTCT
Found at i:10033395 original size:23 final size:23
Alignment explanation
Indices: 10033336--10033407 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
10033326 AAATATGATG
*
10033336 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAATATAA
* * *
10033359 TATTAAAGTGTAAAATAATATAA
1 TAATAAAATATAAAATAATATAA
*
10033382 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAATATAA
10033405 TAA
1 TAA
10033408 ATATTATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 12 0.30
23 28 0.70
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
TAATAAAATATAAAATAATATAA
Found at i:10033427 original size:24 final size:25
Alignment explanation
Indices: 10033395--10033460 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
10033385 TAAAATATAA
* *
10033395 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
10033420 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
10033446 AATAATAT-ATAAATA
1 AATAATATAATAAATA
10033461 AAGTTTTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:10035419 original size:4 final size:4
Alignment explanation
Indices: 10035405--10035434 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
10035395 AAAATAATGT
10035405 ATAA TATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA -ATAA ATAA ATAA ATAA ATAA ATAA A
10035435 ATATATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:10039557 original size:26 final size:26
Alignment explanation
Indices: 10039521--10039576 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
10039511 TGAAATGCCC
10039521 ATCATGGAACATTTACCTAAC-CTATT
1 ATCATGGAACATTTACCTAACTC-ATT
10039547 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACTCATT
10039573 ATCA
1 ATCA
10039577 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACTCATT
Found at i:10040579 original size:205 final size:205
Alignment explanation
Indices: 10040224--10040984 Score: 1317
Period size: 205 Copynumber: 3.7 Consensus size: 205
10040214 AAATCTGCTT
*
10040224 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGT-TTCATCGTAAACA
1 CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTT-TCTTCATCGTAAACA
10040288 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCT
65 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCT
* * *
10040353 TGGATCTACTTTAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTG
130 TGGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTG
10040418 GAGATGCCAGA
195 GAGATGCCAGA
10040429 CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAACAC
1 CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAACAC
10040494 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTT
*
10040559 GGATCTGCTTCAGCATAAACATCTAAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGG
10040624 AGATGCCAGA
196 AGATGCCAGA
* * * *
10040634 CTTCGATTTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAAATTTGCTTCATCGTAAACAC
1 CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAACAC
10040699 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTT
*
10040764 GGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGG
131 GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGG
*
10040829 AGATGCTAGA
196 AGATGCCAGA
* *
10040839 CTTTGATTTGCTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTTCTTCAACGTAAACAC
1 CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAACAC
* * * * * *
10040904 GTGAAAGCCCAAATCAGCTATGTCTTTGGTTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCT
66 GTGAAAG-CCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCT
10040969 TGGATCTTGCTTCAGC
130 TGGATC-TGCTTCAGC
10040985 CAGATCTGCT
Statistics
Matches: 528, Mismatches: 25, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
204 1 0.00
205 462 0.88
206 57 0.11
207 8 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (205 bp):
CTTTGATTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTT
GGATCTGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGG
AGATGCCAGA
Found at i:10049056 original size:14 final size:16
Alignment explanation
Indices: 10049021--10049057 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
10049011 CAAACGATGC
10049021 GATG-AAATGCTATGA
1 GATGCAAATGCTATGA
10049036 GATGCAAATGC-ATGA
1 GATGCAAATGCTATGA
10049051 -ATGCAAA
1 GATGCAAA
10049058 AAGGATATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (16 bp):
GATGCAAATGCTATGA
Found at i:10051822 original size:21 final size:21
Alignment explanation
Indices: 10051778--10051822 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
10051768 AACCCTTTTT
* * **
10051778 AAATCGAGTTTTGGAAAATGG
1 AAATCGACTTTAGGAAAAACG
10051799 AAATCGACTTTAGGAAAAACG
1 AAATCGACTTTAGGAAAAACG
10051820 AAA
1 AAA
10051823 ACGGGAGTCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (21 bp):
AAATCGACTTTAGGAAAAACG
Found at i:10053064 original size:12 final size:12
Alignment explanation
Indices: 10053014--10053149 Score: 50
Period size: 12 Copynumber: 11.1 Consensus size: 12
10053004 TATATAATAG
10053014 TATATAA-A-AA
1 TATATAATATAA
10053024 TA-ATAATATAA
1 TATATAATATAA
*
10053035 TAAATGAA-ATAA
1 TATAT-AATATAA
*
10053047 TTTATAATATATAA
1 TATAT-A-ATATAA
* *
10053061 TATAAAATGTAA
1 TATATAATATAA
* * *
10053073 GTTTTTAAAATAA
1 -TATATAATATAA
*
10053086 TGTATAATATAAA
1 TATATAATAT-AA
*
10053099 TAAATAA-ATAA
1 TATATAATATAA
*
10053110 TAAAATATATATAA
1 T-ATATA-ATATAA
*
10053124 GT-TAAAATATAA
1 -TATATAATATAA
10053136 TATATAATAATAA
1 TATATAAT-ATAA
10053149 T
1 T
10053150 TTACAAATTT
Statistics
Matches: 93, Mismatches: 19, Indels: 25
0.68 0.14 0.18
Matches are distributed among these distances:
9 4 0.04
10 3 0.03
11 8 0.09
12 40 0.43
13 26 0.28
14 11 0.12
15 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (12 bp):
TATATAATATAA
Found at i:10053148 original size:63 final size:62
Alignment explanation
Indices: 10053005--10053149 Score: 138
Period size: 63 Copynumber: 2.3 Consensus size: 62
10052995 AATAGATAGT
* **
10053005 ATATAATAGTAT-ATAAAAATAATAATATAATAAATGAAATAATTTATAATATATAATATAAA
1 ATATAATA-TATAATAATAATAATAATATAATAAATGAAATAATAAATAATATATAATATAAA
* * * *
10053067 ATGTAAGTTTTTAA-AATAATGTATAATATAAATAAAT-AAATAATAAA-ATATATATAAGT-TA
1 ATATAA-TATATAATAATAAT-AATAATAT-AATAAATGAAATAATAAATA-ATATATAA-TATA
10053128 AA
61 AA
10053130 ATATAATATATAATAATAAT
1 ATATAATATATAATAATAAT
10053150 TTACAAATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
62 18 0.27
63 40 0.61
64 8 0.12
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (62 bp):
ATATAATATATAATAATAATAATAATATAATAAATGAAATAATAAATAATATATAATATAAA
Found at i:10053187 original size:12 final size:12
Alignment explanation
Indices: 10053165--10053198 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
10053155 AATTTTGAAA
10053165 ATATA-AATAAT
1 ATATATAATAAT
10053176 ATATATAATAAT
1 ATATATAATAAT
10053188 ATATATAATAA
1 ATATATAATAA
10053199 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:10055791 original size:21 final size:19
Alignment explanation
Indices: 10055766--10055819 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
10055756 ATCTAATTAA
10055766 AAATATTTAATTATTATATTT
1 AAATATTTAATTA-TAT-TTT
*
10055787 AAATATTTAAATATATTTT
1 AAATATTTAATTATATTTT
*
10055806 ATATATTCTAATTA
1 AAATATT-TAATTA
10055820 AAATTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 9 0.31
20 8 0.28
21 12 0.41
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
AAATATTTAATTATATTTT
Found at i:10055877 original size:20 final size:22
Alignment explanation
Indices: 10055833--10055883 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
10055823 TTAATAAAAA
10055833 ATTAAAATTAATTACTTAGAAAT
1 ATTAAAATTAATTACTTAG-AAT
10055856 ATTTAAAATTAA-TA-TTAG-AT
1 A-TTAAAATTAATTACTTAGAAT
10055876 ATTAAAAT
1 ATTAAAAT
10055884 ATTAACAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 7 0.26
20 3 0.11
22 4 0.15
23 3 0.11
24 10 0.37
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTAAAATTAATTACTTAGAAT
Found at i:10056074 original size:13 final size:13
Alignment explanation
Indices: 10056053--10056100 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
10056043 AACACTCAAA
10056053 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
10056066 TTCTCAAAAGAAC
1 TTTTCAAAAGCAC
* *
10056079 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
10056092 TTTTCAAAA
1 TTTTCAAAA
10056101 ATATTGCCAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:10057050 original size:17 final size:17
Alignment explanation
Indices: 10057040--10057086 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 17
10057030 TTATTTTGTT
10057040 TTATTTATTATTATTTA
1 TTATTTATTATTATTTA
10057057 TTATTTATTATTATTTTA
1 TTATTTATTATTA-TTTA
10057075 TTTTATTTATTA
1 --TTATTTATTA
10057087 ATTTAGGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.48
18 4 0.15
20 10 0.37
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTATTTATTATTATTTA
Found at i:10057053 original size:10 final size:10
Alignment explanation
Indices: 10057040--10057086 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
10057030 TTATTTTGTT
10057040 TTATTTATTA
1 TTATTTATTA
10057050 TTA--T-TTA
1 TTATTTATTA
10057057 TTATTTATTA
1 TTATTTATTA
10057067 TTATTTTATT-
1 TTA-TTTATTA
10057077 TTATTTATTA
1 TTATTTATTA
10057087 ATTTAGGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
7 6 0.19
8 1 0.03
9 7 0.22
10 12 0.38
11 6 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTTATTA
Found at i:10057091 original size:17 final size:17
Alignment explanation
Indices: 10057028--10057091 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
10057018 AATAGGAAGA
* *
10057028 TATTATTTTGTTTTATT
1 TATTAATTTATTTTATT
10057045 TATTATTATTTATTATT-TAT
1 TATTA--ATTTATT-TTAT-T
*
10057065 TATTATTTTATTTTATT
1 TATTAATTTATTTTATT
10057082 TATTAATTTA
1 TATTAATTTA
10057092 GGTTAGGCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
17 17 0.45
18 7 0.18
19 6 0.16
20 8 0.21
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.72
Consensus pattern (17 bp):
TATTAATTTATTTTATT
Found at i:10063696 original size:19 final size:21
Alignment explanation
Indices: 10063656--10063705 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
10063646 AAAATTGTAG
10063656 ATATTTTTATTATATTTATAT
1 ATATTTTTATTATATTTATAT
10063677 ATATTTTT-TGTA-ATTT-TAT
1 ATATTTTTAT-TATATTTATAT
10063696 ATAATTTTTA
1 AT-ATTTTTA
10063706 ATTTTCTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 5 0.19
20 11 0.42
21 10 0.38
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
ATATTTTTATTATATTTATAT
Found at i:10063863 original size:18 final size:18
Alignment explanation
Indices: 10063842--10063901 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
10063832 ATATTTTTTC
10063842 AATTTTTATAATGTATAT
1 AATTTTTATAATGTATAT
* *
10063860 AATTTTTTAGTCATTTATTAT
1 AA-TTTTTA-TAATGTA-TAT
*
10063881 ACTTTTTATAATGTATAT
1 AATTTTTATAATGTATAT
10063899 AAT
1 AAT
10063902 ATATTTTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
18 7 0.21
19 11 0.33
20 11 0.33
21 4 0.12
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (18 bp):
AATTTTTATAATGTATAT
Found at i:10064010 original size:18 final size:18
Alignment explanation
Indices: 10063989--10064034 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
10063979 AATTTTTATT
*
10063989 TTTTTTGTAATTCATATA
1 TTTTTTATAATTCATATA
*
10064007 TTTTTTATAATTTATATA
1 TTTTTTATAATTCATATA
*
10064025 TTATTTATAA
1 TTTTTTATAA
10064035 ATTATTGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTTTATAATTCATATA
Found at i:10064039 original size:18 final size:18
Alignment explanation
Indices: 10063997--10064039 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
10063987 TTTTTTTTGT
*
10063997 AATTCATATATTTTTTATA
1 AATT-ATATATTATTTATA
*
10064016 ATTTATATATTATTTATA
1 AATTATATATTATTTATA
10064034 AATTAT
1 AATTAT
10064040 TGCAGTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTATATATTATTTATA
Found at i:10064086 original size:9 final size:9
Alignment explanation
Indices: 10064055--10064105 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
10064045 TTTTCTATAT
10064055 TTTTATAATA
1 TTTT-TAATA
*
10064065 ATTTTAATA
1 TTTTTAATA
10064074 TTTTTAAT-
1 TTTTTAATA
*
10064082 TTTTTATAAA
1 TTTTTA-ATA
*
10064092 TTTTAAATA
1 TTTTTAATA
10064101 TTTTT
1 TTTTT
10064106 TAAATATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
8 6 0.18
9 19 0.58
10 8 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTTAATA
Found at i:10064094 original size:18 final size:18
Alignment explanation
Indices: 10064066--10064110 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
10064056 TTTATAATAA
*
10064066 TTTTAATATTTTTAAT-TT
1 TTTTAA-ATTTTAAATATT
10064084 TTTATAAATTTTAAATATT
1 TTT-TAAATTTTAAATATT
10064103 TTTTAAAT
1 TTTTAAAT
10064111 ATTCATAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTAAATTTTAAATATT
Found at i:10064199 original size:15 final size:15
Alignment explanation
Indices: 10064175--10064225 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
10064165 TTATGATTTA
*
10064175 TATAAATTTTTCATT
1 TATAATTTTTTCATT
*
10064190 TATAATTTTTGCACTT
1 TATAATTTTTTCA-TT
*
10064206 T-TATTTTTTTCATT
1 TATAATTTTTTCATT
*
10064220 TTTAAT
1 TATAAT
10064226 ATATATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
14 3 0.10
15 23 0.79
16 3 0.10
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (15 bp):
TATAATTTTTTCATT
Found at i:10064257 original size:18 final size:18
Alignment explanation
Indices: 10064230--10064264 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10064220 TTTAATATAT
10064230 ATTTTATATAATTTTATG
1 ATTTTATATAATTTTATG
* *
10064248 ATTTTCTATATTTTTAT
1 ATTTTATATAATTTTAT
10064265 AATAATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTATATAATTTTATG
Found at i:10064258 original size:29 final size:30
Alignment explanation
Indices: 10064225--10064282 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
10064215 TCATTTTTAA
10064225 TATATATTTTAT-ATAA-TTTTATGATTTTC
1 TATAT-TTTTATAATAATTTTTATGATTTTC
10064254 TATATTTTTATAATAATTTTTATGATTTT
1 TATATTTTTATAATAATTTTTATGATTTT
10064283 TTTAATTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 6 0.22
29 9 0.33
30 12 0.44
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (30 bp):
TATATTTTTATAATAATTTTTATGATTTTC
Found at i:10064281 original size:21 final size:21
Alignment explanation
Indices: 10064248--10064288 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10064238 TAATTTTATG
10064248 ATTTTCTATATTTTTATAATA
1 ATTTTCTATATTTTTATAATA
*
10064269 ATTTT-TATGATTTTTTTAAT
1 ATTTTCTAT-ATTTTTATAAT
10064289 TATCTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTTCTATATTTTTATAATA
Found at i:10072306 original size:16 final size:17
Alignment explanation
Indices: 10072265--10072300 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
10072255 AAAATTAAGT
*
10072265 TTAGACCCATTTTTGGC
1 TTAGACCCATTTTTAGC
10072282 TTAGACCCATTTTTAGC
1 TTAGACCCATTTTTAGC
10072299 TT
1 TT
10072301 GGCCCACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (17 bp):
TTAGACCCATTTTTAGC
Found at i:10077075 original size:31 final size:29
Alignment explanation
Indices: 10077005--10077075 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 29
10076995 TTGAGTTACG
* *
10077005 TTTTAGTCACTTATGTTTGAAATATTACG
1 TTTTAGTCACTTATGTTTGAAATATAACA
* * *
10077034 TTTTAATCACTTATGTTATCGTATTATAACA
1 TTTTAGTCACTTATGTT-T-GAAATATAACA
10077065 TTTTAGTCACT
1 TTTTAGTCACT
10077076 GAGCTGTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 16 0.47
30 1 0.03
31 17 0.50
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (29 bp):
TTTTAGTCACTTATGTTTGAAATATAACA
Found at i:10080739 original size:18 final size:17
Alignment explanation
Indices: 10080698--10080740 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
10080688 ATATTAGGAT
*
10080698 AAAATAATAAGTATAATG
1 AAAAT-ATAAGGATAATG
10080716 ATAAATATAAGGATATATG
1 A-AAATATAAGGATA-ATG
10080735 AAAATA
1 AAAATA
10080741 ATACTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.28
Consensus pattern (17 bp):
AAAATATAAGGATAATG
Found at i:10083280 original size:89 final size:88
Alignment explanation
Indices: 10083127--10083514 Score: 290
Period size: 88 Copynumber: 4.4 Consensus size: 88
10083117 GTGATCCTGA
* * *
10083127 GCTCAACTCATTTCTCGCAATATGAATTGACTTTTAAAAACTAGACATTAAAAACAGAAATTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACATTAAAAACAGAAATTG-A
* *
10083192 AAATAGCTCAGCACATGAGCAAAG
65 AAATACCTCAGCACATGACCAAAG
* ** **
10083216 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAC-AGA-ATTTGCCAAACAGATTTTG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACA-TT-AAAAACAGAAATTG
* ** **
10083279 AAAATACCTCGGCATGTGACCCGAG
64 AAAATACCTCAGCACATGACCAAAG
* * * * **
10083304 GCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGAATA-A-ATTGAAAAAACATTAAT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATT-TTTAAAA-ACTAGACATT--AAAAACAGAAAT
* **
10083367 TGAAAATACCTCAG--CGTG-CCTCGAG
62 TGAAAATACCTCAGCACATGACC-AAAG
* * ** * *
10083392 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAAC-AGAAATTGAAAAACAAAAATTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACATT-AAAAACAGAAATTGA
* *** *
10083456 AAAGACCTCAGCGTGTGAGCC-GAG
65 AAATACCTCAGCACATGA-CCAAAG
* *
10083480 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
10083515 GACAAACAGA
Statistics
Matches: 246, Mismatches: 40, Indels: 27
0.79 0.13 0.09
Matches are distributed among these distances:
85 1 0.00
86 25 0.10
87 11 0.04
88 130 0.53
89 54 0.22
90 24 0.10
91 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (88 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACTAGACATTAAAAACAGAAATTGAA
AATACCTCAGCACATGACCAAAG
Found at i:10083329 original size:88 final size:87
Alignment explanation
Indices: 10083214--10083532 Score: 371
Period size: 88 Copynumber: 3.6 Consensus size: 87
10083204 ACATGAGCAA
* * * * *
10083214 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTA-AAACAGAATTTGCCAAACAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTG-AAAACAAATTTT
*
10083278 GAAAATACCTCGGCATGTGACCCG
65 GAAAATACCTCAGC-TGTGACCCG
* * * *
10083302 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGA-AAAGAATAAATTGAAAA-AACATTA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-CAGAAATTGAAAACAA-ATT-
10083365 ATTGAAAATACCTCAGC-GTG-CCTCG
63 -TTGAAAATACCTCAGCTGTGACC-CG
* **
10083390 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAACAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTG-AAAACAAATTTT
* *
10083454 GAAAAGACCTCAGCGTGTGAGCCG
65 GAAAATACCTCAGC-TGTGACCCG
*
10083478 AGGCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAA
10083533 TTACCTCAGC
Statistics
Matches: 198, Mismatches: 21, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
86 15 0.08
87 15 0.08
88 126 0.64
89 27 0.14
90 15 0.08
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAAACAAATTTTG
AAAATACCTCAGCTGTGACCCG
Found at i:10083576 original size:73 final size:73
Alignment explanation
Indices: 10083438--10083587 Score: 221
Period size: 73 Copynumber: 2.0 Consensus size: 73
10083428 CGAACAGAAA
*
10083438 TTGAAAAACAAAAATTGAAAAGACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCGATAT
1 TTGAAAAACAAAAATTGAAAAGACCTCAGCGTGT--GCCGAGGCTCAACTCACCTCTCGCAATAT
10083503 GAGTTGATTT
64 GAGTTGATTT
* * **
10083513 TTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAAAAATTGAAAAGACCTCAGCGTGTGCC-GAGGCTCAACTCACCTCTCGCAATATG
10083577 AGTTGATTT
65 AGTTGATTT
10083586 TT
1 TT
10083588 TTGAAGAGCA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
72 2 0.03
73 37 0.54
75 30 0.43
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (73 bp):
TTGAAAAACAAAAATTGAAAAGACCTCAGCGTGTGCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:10083589 original size:75 final size:74
Alignment explanation
Indices: 10083442--10083843 Score: 262
Period size: 75 Copynumber: 5.2 Consensus size: 74
10083432 CAGAAATTGA
* * *
10083442 AAAACAAAAATTGAAAAGACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAG
10083506 TTGA--TTTTTG
63 TTGATTTTTTTG
*
10083516 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10083581 GATTTTTTTG
65 GATTTTTTTG
* * ** * *** * * * * * * *
10083591 AAGAGCAGAAATTGGAAAGCAGAAATTGAAAAT-ACCTCAGCGTGCCCTGAGGCTTAACTCAC-C
1 AA-AACAGAAATT-GAAA--A-TACCTCAGCGTGTCCT--GAG-G--CTCA-ACTCACCTCTCGC
** *
10083654 TCTA-GCAATATGAGTTGATTTTTTTG
55 AATATG-AGT-TGA--T--TTTT-TTG
* * *
10083680 ACAAACATAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10083745 GATTTTTTTG
65 GATTTTTTTG
* * *
10083755 AAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGCT
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10083820 GA--TTTTTG
65 GATTTTTTTG
*
10083828 AAAAACATAAATTGAA
1 -AAAACAGAAATTGAA
10083844 GAAAACAGAA
Statistics
Matches: 250, Mismatches: 50, Indels: 57
0.70 0.14 0.16
Matches are distributed among these distances:
72 2 0.01
73 48 0.19
74 9 0.04
75 102 0.41
76 8 0.03
78 4 0.02
79 4 0.02
80 12 0.05
81 9 0.04
82 2 0.01
83 9 0.04
84 12 0.05
85 4 0.02
86 4 0.02
88 8 0.03
89 12 0.05
90 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:10083692 original size:89 final size:89
Alignment explanation
Indices: 10083521--10083693 Score: 276
Period size: 89 Copynumber: 1.9 Consensus size: 89
10083511 TTTTGACAAA
* * *
10083521 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
*
10083586 TTTTGAAGAGCAGAAATTGGAAAG
66 TTTTGAAGAACAGAAATTGGAAAG
*
10083610 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTAGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
*
10083675 TTTTGACA-AACATAAATTG
66 TTTTGA-AGAACAGAAATTG
10083694 AAATTACCTT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
89 76 0.99
90 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (89 bp):
CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
TTTTGAAGAACAGAAATTGGAAAG
Found at i:10083694 original size:164 final size:159
Alignment explanation
Indices: 10083364--10085105 Score: 1252
Period size: 164 Copynumber: 10.9 Consensus size: 159
10083354 AAAAAACATT
* **
10083364 AATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * * *
10083428 CGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCGTGTGAGCC-GAGGCTCAACTCACC
65 TGAACAGAAATT--AAAGCAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACC
*
10083492 TCTCGCGATATGAGTTGA--TTTTTGACAAACAGA
125 TCTCGCAATATGAGTTGATTTTTTTGACAAACAGA
10083525 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
10083590 GAAGAGCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCT
66 G-A-A-CAGAAATT--AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
* *
10083655 CTAGCAATATGAGTTGATTTTTTTGACAAACATA
126 CTCGCAATATGAGTTGATTTTTTTGACAAACAGA
*
10083689 AATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
10083754 -----G--A--AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGC
66 GAACAGAAATTAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGC
* *
10083810 AATATGAGCTGATTTTTGAAAAACATAAATTGAAGAAAACAGA
131 AATATGAGTTGA-TTTT--------T---TTG-A-CAAACAGA
* * *
10083853 AATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-T
** * ** * * *
10083918 AAAACAGATATTAAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCATCT
65 TGAACAGAAATT-AAAGCAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCT
*
10083982 CTCGCGATATGAGTTGA--TTTTTGACAAACAGA
126 CTCGCAATATGAGTTGATTTTTTTGACAAACAGA
10084014 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
10084079 GAAGAGCAAAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
66 G-A-A-CAGAAATT--AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
* *
10084144 CTAGCAATATGAGTTGATTTTTTTGACAAACATA
126 CTCGCAATATGAGTTGATTTTTTTGACAAACAGA
10084178 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
10084243 -----G--A--AAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGC
66 GAACAGAAATTAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGC
* *
10084299 AATATGAGCTGATTTTTGAAAAACATAAATTGAAGAAAACAGA
131 AATATGAGTTGA-TTTT--------T---TTG-A-CAAACAGA
* *
10084342 AATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * *
10084405 -----G-AA--AAA-CAGAAATTAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGC
66 GAACAGAAATTAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGC
*
10084461 AATATGAGCTGATTTTTTTGAAACACGGAAATTAAAACAGA
131 AATATGAGTTGATTTTTTTG----AC--------AAACAGA
* *
10084502 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * ** * ** * * * * * *
10084567 -TA-TG--A-TAAA--A-TACCTCAATGTGA-CT-TGAG-GCCC--A-ACTCACCTCTCGCAATA
66 GAACAGAAATTAAAGCAGAAATTGAAAAT-ACCTCAGCGTGCCCTGAGGCTCAACTCAC-C--TC
* * * *** * *
10084618 T-G-AGT-TGATTTTTGAAACATAAATT-AAAACACAAA
127 TCGCAATATGA--GTTG--A-TTTTTTTGACAA-ACAGA
* * *
10084653 AATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTT
1 AATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * * *
10084716 TG-A-A-AAA-T-----AGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTGTTG
65 TGAACAGAAATTAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCG
***
10084772 CAATATGAGTTGATTTTTGAAAAAACATAAATTGAGCAGA
130 CAATATGAGTTGATTTTT---TTGAC---AA---A-CAGA
* * * **
10084812 AATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCATAATATGAGTTGA-TTTTT
1 AATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* ** * * *
10084875 T-----G--A-T---G-ATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCG
65 TGAACAGAAATTAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCG
*
10084928 CAATATGAGTTGATTTTTTTGAAAAACAGA
130 CAATATGAGTTGATTTTTTTGACAAACAGA
* * *
10084958 AATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * * * * *
10085021 GAAACATAAATTAAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAGGCTCAACTCACCTCT
66 G-AACAGAAATT-AAA-GCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
* *
10085086 CGCAATATGAATTAATTTTT
128 CGCAATATGAGTTGATTTTT
10085106 AAAAAAAATA
Statistics
Matches: 1298, Mismatches: 155, Indels: 257
0.76 0.09 0.15
Matches are distributed among these distances:
145 6 0.00
146 56 0.04
147 1 0.00
148 2 0.00
149 8 0.01
150 143 0.11
151 72 0.06
152 6 0.00
153 9 0.01
154 14 0.01
155 2 0.00
156 59 0.05
158 14 0.01
159 63 0.05
160 120 0.09
161 140 0.11
162 149 0.11
163 26 0.02
164 342 0.26
165 4 0.00
166 1 0.00
170 1 0.00
172 1 0.00
174 2 0.00
175 23 0.02
177 32 0.02
178 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (159 bp):
AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAACAGAAATTAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGACAAACAGA
Found at i:10083850 original size:16 final size:16
Alignment explanation
Indices: 10083829--10083859 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10083819 TGATTTTTGA
*
10083829 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
10083845 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
10083860 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:10083912 original size:89 final size:89
Alignment explanation
Indices: 10083754--10084020 Score: 353
Period size: 89 Copynumber: 3.0 Consensus size: 89
10083744 TGATTTTTTT
* * * *
10083754 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGC
1 GAAAA-CAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
10083819 TGATTTTTGAAAAACATAAATTGAA
65 TGATTTTTGAAAAACAGAAATTGAA
* *
10083844 GAAAACAGAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
10083909 GATTTTTGAAAAACAGATATT--A
66 GATTTTTGAAAAACAGAAATTGAA
* * * *
10083931 -AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCATCTCTCGCGATATGA
1 GAAAACAGAAATTGAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
*
10083994 GTTGATTTTTGACAAACAGAAATTGAA
63 GTTGATTTTTGAAAAACAGAAATTGAA
10084021 ATTACCTCAG
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
86 27 0.17
87 1 0.01
88 47 0.30
89 75 0.48
90 6 0.04
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (89 bp):
GAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAA
Found at i:10084080 original size:75 final size:75
Alignment explanation
Indices: 10083930--10084332 Score: 282
Period size: 75 Copynumber: 5.2 Consensus size: 75
10083920 AACAGATATT
* * * * *
10083930 AAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCATCTCTCGCGATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
10083994 GTTGA--TTTTTG
63 GTTGATTTTTTTG
* *
10084005 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10084070 GATTTTTTTG
66 GATTTTTTTG
* * * * ** *** * * * * * *
10084080 AAGAGCAAAAATTGGAAAGCAGAAATCGAAAAT-ACCTCAGCGTGCCCTGAGGCTCAACTCAC-C
1 AAAAACAGAAATT-GAAA--ATACCTC-AGCGTGTCCT--GAG-G--CTCA-ACTCACCTCTCGC
** *
10084143 TCTA-GCAATATGAGTTGATTTTTTTG
56 AATATG-AGT-TGA--T--TTTT-TTG
* * *
10084169 ACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10084234 GATTTTTTTG
66 GATTTTTTTG
* * *
10084244 AAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10084309 GA--TTTTTG
66 GATTTTTTTG
*
10084317 AAAAACATAAATTGAA
1 AAAAACAGAAATTGAA
10084333 GAAAACAGAA
Statistics
Matches: 250, Mismatches: 55, Indels: 48
0.71 0.16 0.14
Matches are distributed among these distances:
72 2 0.01
73 54 0.22
75 102 0.41
76 8 0.03
78 7 0.03
79 2 0.01
80 13 0.05
81 9 0.04
82 2 0.01
83 9 0.04
84 13 0.05
85 2 0.01
86 7 0.03
88 8 0.03
89 12 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:10084181 original size:89 final size:89
Alignment explanation
Indices: 10084010--10084182 Score: 276
Period size: 89 Copynumber: 1.9 Consensus size: 89
10084000 TTTTGACAAA
* * * *
10084010 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
*
10084075 TTTTGAAGAGCAAAAATTGGAAAG
66 TTTTGAAGAACAAAAATTGGAAAG
10084099 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
*
10084164 TTTTGACA-AACATAAATTG
66 TTTTGA-AGAACAAAAATTG
10084183 AAATTACCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
89 76 0.99
90 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (89 bp):
CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
TTTTGAAGAACAAAAATTGGAAAG
Found at i:10084282 original size:489 final size:481
Alignment explanation
Indices: 10083267--10085273 Score: 2156
Period size: 489 Copynumber: 4.2 Consensus size: 481
10083257 AGAATTTGCC
** * * *
10083267 AAACAGATTTTGAAAATACCTCGGCATGTGACCC-GAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
* ** *
10083331 TGATTCTTGAAAAGA-ATAAATTGAA-AAAACATTAATTGAAAATACCTCAGCGTG-CCTCGAGG
63 TGATTTTTGAAAA-ACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCT-GAGG
** *
10083393 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACGAACAGAAATTGAAAAACAAAAATTGAA
126 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT----AA-TAAAATTGAA
* *
10083457 AAGACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGTTGA-TTTTTGACAAA
186 AAGACCTCAGCATGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAA
*
10083521 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
250 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
10083586 TTTTGAAGAGCAGAAATTGGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTC
314 TTTTGAA-A-CA-AAATT-GAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
* *
10083651 ACCTCTAGCAATATGAGTTGATTTTT-TTGACAAACATAAATTGAAATTACCTTAGCGTGTCCTG
375 ACCTCTAGCAATATGAGTTGATTTTTATTGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTG
10083715 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
440 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
10083757 AAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGCTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
* *
10083822 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTAAGGCTCAA
66 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
*
10083887 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGATATTAAAAATAGAAATTGAAAAGACC
131 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT---AATA-AAATTGAAAAGACC
* *
10083952 TCAGCATGTGAGCCGAGGCTCAACTCATCTCTCGCGATATGAGTTGA-TTTTTGACAAACAGAAA
192 TCAGCATGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAA
*
10084016 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
256 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
*
10084081 AGAGCAAAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
320 A-A-C-AAAATT-GAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
*
10084146 AGCAATATGAGTTGATTTTT-TTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
381 AGCAATATGAGTTGATTTTTATTGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
10084210 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
446 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
*
10084246 AAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
* *
10084311 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAA
66 TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
*
10084376 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-A-AAAA-T------ACCTCAT
131 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAATAAAATTGAAAAGACCTCAG
* *
10084432 C--GTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACGGAAATTA
196 CATGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG----AC--------
*
10084495 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
247 AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* ** * * *
10084560 TTTTTT---------TT---A--TG--A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCAC
312 TTTTTTGAAACAAAATTGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCAC
* * *
10084607 CTCTCGCAATATGAGTTGATTTTTGAAACATAAATTAAAACACAAAAATTGACAA-TACCTCAGC
377 CTCTAGCAATATGAGTTGATTTTT-----AT---TGAAAA-ACATAAATTGA-AATTACCTCAGC
* * *
10084671 GTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTTGAA
432 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * * * * *
10084720 AAATAGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTGTTGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
* * *
10084785 TTTTTGAAAAAACATAAATTG-AG----CAGAAATTGAAAATACCTCAACAGGTCTTGAGGCTCA
66 TTTTTG-AAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCA
** * * *
10084845 ACTCACCTCTCATAATATGAGTTGATTTTT-------TG--A-TGAT-AAATTGAAAATACCTCA
130 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAATAAAATTGAAAAGACCTCA
* * *
10084899 --ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
195 GCATGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGACAAACAGAAATT
* *
10084962 GAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTGAAAC
258 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAC
* * * * * * *
10085026 ATAAATTAAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAGGCTCAACTCACCTCTCGCAA
323 A-AAATTGAAA-GCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAA
* * * * * *
10085091 TATGAATTAATTTTTAAAAAAAATAGAAATTAAAACAGAAATTAAAAATACCTCAGCGTGTGAGC
386 TATGAGTTGATTTTT-------ATTG--A--AAAACATAAATTGAAATTACCTCAGCGTGT---C
* *
10085156 C-AAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAA
437 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * ** *
10085200 AAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTATTTCTCGTAATATGAG-TAG
1 AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT-G
*
10085264 AATTTTGAAA
65 ATTTTTGAAA
10085274 CAGAAATAAA
Statistics
Matches: 1339, Mismatches: 100, Indels: 167
0.83 0.06 0.10
Matches are distributed among these distances:
455 5 0.00
456 62 0.05
460 1 0.00
461 5 0.00
462 1 0.00
463 1 0.00
464 1 0.00
465 54 0.04
467 1 0.00
468 52 0.04
469 1 0.00
470 62 0.05
471 2 0.00
473 3 0.00
474 112 0.08
475 120 0.09
476 18 0.01
477 26 0.02
478 3 0.00
479 34 0.03
480 71 0.05
482 1 0.00
483 3 0.00
484 1 0.00
485 1 0.00
487 10 0.01
488 116 0.09
489 532 0.40
490 40 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (481 bp):
AAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
TTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAATAAAATTGAAAAGACCTCAG
CATGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAA
AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAA
ATTGAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTAGCAATATGA
GTTGATTTTTATTGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTGAA
Found at i:10084339 original size:16 final size:16
Alignment explanation
Indices: 10084318--10084348 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10084308 TGATTTTTGA
*
10084318 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
10084334 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
10084349 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:10084401 original size:89 final size:90
Alignment explanation
Indices: 10084243--10084418 Score: 291
Period size: 89 Copynumber: 2.0 Consensus size: 90
10084233 TGATTTTTTT
*
10084243 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 GAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
10084308 TGATTTTTGAAAAACATAAATTGAA
66 TGATTTTTGAAAAACAGAAATTGAA
* * * *
10084333 GAAAA-CAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
10084397 TGATTTTTGAAAAACAGAAATT
66 TGATTTTTGAAAAACAGAAATT
10084419 AAAAATACCT
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
89 75 0.94
90 5 0.06
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (90 bp):
GAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
TGATTTTTGAAAAACAGAAATTGAA
Found at i:10084485 original size:73 final size:73
Alignment explanation
Indices: 10084335--10085036 Score: 299
Period size: 73 Copynumber: 9.2 Consensus size: 73
10084325 AAATTGAAGA
* * * * *
10084335 AAACAGAAATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
***
10084400 TTTTTGAA
66 TTTTTTTG
* * *
10084408 AAACAGAAATTAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA
1 AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
10084473 TTTTTTTG
66 TTTTTTTG
*
10084481 AAACACGGAAATTAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
1 AAACA--GAAATT---------A---AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
10084546 GCAATATGAGTTGATTTTTTT-
52 GCAATATGAGTTGATTTTTTTG
* * ** * *
10084567 -TA-TG--A-T-AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
10084626 --TTTTTG
66 TTTTTTTG
* * ** * * * * * *
10084632 AAACATAAATTAAAACACAAAAAT-TGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 AAACAGAAATT-AAA-A-ATACCTCAG-C-GTGACCT--GAG-G-CTC-A-ACTC-AC-C-TCTC
* **
10084695 TCACAAT-A--TGAGTTGATTTTTTG
52 GCAATATGAGTTGA-TT--TTTT-TG
* * * * * * *
10084718 AAAAATAGAAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTGTTGCAATATGAGTT
1 --AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
10084783 GATTTTTGAAAAAACATA
64 GATTTTT--------TTG
* * * * **
10084801 AATTGAGCAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCATAATATGA
1 AA---A-CAGAAATTAAAAATACCTCAGC-GTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
10084865 GTTGA-TTTTTTG
61 GTTGATTTTTTTG
** * * ** * *
10084877 -ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
10084941 TTTTTTTG
66 TTTTTTTG
* * * *
10084949 AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 --AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
10085014 GA--TTTTTG
64 GATTTTTTTG
*
10085022 AAACATAAATTAAAA
1 AAACAGAAATTAAAA
10085037 CACAAAAATT
Statistics
Matches: 474, Mismatches: 89, Indels: 134
0.68 0.13 0.19
Matches are distributed among these distances:
64 5 0.01
66 49 0.10
69 1 0.00
70 2 0.00
71 66 0.14
72 9 0.02
73 74 0.16
74 6 0.01
75 64 0.14
76 11 0.02
77 3 0.01
78 7 0.01
79 8 0.02
80 8 0.02
81 6 0.01
82 4 0.01
83 9 0.02
84 7 0.01
85 63 0.13
86 5 0.01
87 58 0.12
88 9 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
AAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTG
Found at i:10084553 original size:87 final size:87
Alignment explanation
Indices: 10084407--10084566 Score: 275
Period size: 87 Copynumber: 1.8 Consensus size: 87
10084397 TGATTTTTGA
* *
10084407 AAAACAGAAATTAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10084472 ATTTTTTTGAAACACGGAAATT
66 ATTTTTTTGAAACACGGAAATT
* * *
10084494 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
10084559 ATTTTTTT
66 ATTTTTTT
10084567 TATGATAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (87 bp):
AAAACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTTTTGAAACACGGAAATT
Found at i:10084613 original size:66 final size:66
Alignment explanation
Indices: 10084507--10084630 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 66
10084497 ACAGAAATTG
* * *
10084507 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGA
1 AAAATACCTCAACGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGA
10084572 T
66 T
* *
10084573 AAAATACCTCAATGTGACTTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATACCTCAACGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
10084631 GAAACATAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (66 bp):
AAAATACCTCAACGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTATGA
T
Found at i:10084776 original size:74 final size:74
Alignment explanation
Indices: 10084652--10085024 Score: 389
Period size: 75 Copynumber: 4.9 Consensus size: 74
10084642 TAAAACACAA
* * ** *
10084652 AAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
10084717 GAAAAATAG
66 GAAAAATAG
* * * * *
10084726 AAATTGAAAATACCTTAGCGTGTCCTGAAGCTCAACTCACCTGTTGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
10084790 GAAAAAACATAAATTGAGCAG
66 G-----A-A-AAA-T----AG
* **
10084811 AAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGC-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
10084875 TG-ATGAT--
65 TGAAAAATAG
** * *
10084882 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
*
10084947 TGAAAAACAG
65 TGAAAAATAG
*
10084957 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
10085021 GAAA
66 GAAA
10085025 CATAAATTAA
Statistics
Matches: 249, Mismatches: 31, Indels: 39
0.78 0.10 0.12
Matches are distributed among these distances:
70 1 0.00
71 52 0.21
72 7 0.03
73 17 0.07
74 51 0.20
75 54 0.22
77 1 0.00
78 2 0.01
79 2 0.01
80 3 0.01
81 1 0.00
85 51 0.20
86 7 0.03
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (74 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAATAG
Found at i:10084933 original size:71 final size:72
Alignment explanation
Indices: 10084808--10085036 Score: 286
Period size: 71 Copynumber: 3.2 Consensus size: 72
10084798 ATAAATTGAG
**
10084808 CAGAAATTGAAAATACCTCAACAG-GTCTTGAGGCTCAACTCACCTCTCATAATATGAGTTGATT
1 CAGAAATTGAAAATACCTCAA-AGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
10084872 TTTTG-AT
65 TTTTGAAA
* * * * *
10084879 GATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
10084944 TTTTGAAAAA
65 TTTTG--AAA
** *
10084954 CAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TT
1 CAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
10085018 TTTGAAA
66 TTTGAAA
*
10085025 CATAAATT-AAAA
1 CAGAAATTGAAAA
10085037 CACAAAAATT
Statistics
Matches: 137, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
70 5 0.04
71 63 0.46
72 7 0.05
73 6 0.04
75 56 0.41
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.31
Consensus pattern (72 bp):
CAGAAATTGAAAATACCTCAAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTGAAA
Found at i:10085202 original size:89 final size:88
Alignment explanation
Indices: 10084949--10085215 Score: 294
Period size: 85 Copynumber: 3.1 Consensus size: 88
10084939 GATTTTTTTG
* *
10084949 AAAAACAGAAATTGAAAATACCTCAGCGTGT-CTTGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGC-CGAGGCTCAACTCACCTCTCGCAATATGAGT
*
10085013 TGA--TTTTTGAAACAT--AAATT
65 TGATTTTTTTGAAAAATAGAAATT
* * * ** *
10085033 AAAACACAAAAATTGACAATACCTCAGCGCGCCCCGAGGCTCAACTCACCTCTCGCAATATGAAT
1 AAAA-ACAGAAATTGAAAATACCTCAGCGTGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* ***
10085098 TAATTTTTAAAAAAAATAGAAATT
65 TGATTTTTTTGAAAAATAGAAATT
* * *
10085122 -AAAACAGAAATTAAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGT--GCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
10085186 TTGATTTTTTTGAAAAACAGAAATT
64 TTGATTTTTTTGAAAAATAGAAATT
*
10085211 GAAAA
1 AAAAA
10085216 TACCTCAGCA
Statistics
Matches: 148, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
84 4 0.03
85 53 0.36
86 1 0.01
87 30 0.20
88 3 0.02
89 53 0.36
90 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGAAAAATAGAAATT
Found at i:10086872 original size:12 final size:11
Alignment explanation
Indices: 10086852--10086890 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
10086842 GACCTCTCCA
10086852 TTTTTTTTTTC
1 TTTTTTTTTTC
*
10086863 TTTCTTTTTTCC
1 TTT-TTTTTTTC
10086875 TTTTTTTTTTGC
1 TTTTTTTTTT-C
10086887 TTTT
1 TTTT
10086891 GAATGAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:10089159 original size:45 final size:45
Alignment explanation
Indices: 10089104--10089461 Score: 210
Period size: 45 Copynumber: 7.9 Consensus size: 45
10089094 CGATTTATAG
* *
10089104 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCTAT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * **
10089149 CTTCAGTCTGTTCCATTGCAACTTCAGGGAGATAAGGCTTG-T-T
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * ** * * * **
10089192 -TT-GACCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTAATTTAT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTAT
* * *
10089239 AGCTTCAATCTGTTCCACTACAACTTCAGGGAAATTAGATTTGCTAT
1 --CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * **
10089286 CTTCAGTCTGATCCACTGCAATTTCAGGGAGATAAGGCTTG-T-T
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * ** * * * * **
10089329 -TT-GACCTACTCTACTGTAACTTCAGAGAGATAGGATCTGTAATTTAT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGAT-T-T--GCTAT
*
10089376 AGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
1 --CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
* * * *
10089423 CTTTAGTCTGCTCCACTGCAACTTCAGGGGGATAAGATT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATT
10089462 AATGGCTGCG
Statistics
Matches: 226, Mismatches: 67, Indels: 40
0.68 0.20 0.12
Matches are distributed among these distances:
41 45 0.20
42 6 0.03
43 4 0.02
44 2 0.01
45 102 0.45
46 2 0.01
47 8 0.04
49 2 0.01
50 6 0.03
51 49 0.22
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (45 bp):
CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT
Found at i:10089263 original size:137 final size:136
Alignment explanation
Indices: 10089020--10089458 Score: 650
Period size: 137 Copynumber: 3.2 Consensus size: 136
10089010 TCCAGTCCGC
* * * *
10089020 TCCACTACAACTTCAGGGAGATAAGGCTTGTAATTTTAACCTGA-TCCACTACAACTTCA-AGAA
1 TCCACTGCAACTTCAGGGAGATAAGGCTTG---TTTTGACCT-ACTCTACTGCAACTTCAGAG-A
**
10089083 GATGAGG-TCTGCGATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATACGATTTGCT
61 GAT-AGGATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATA-GATTTGCT
*
10089147 ATCTTCAGTCTGT
124 ATCTTCAGTCTGA
*
10089160 TCCATTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGCAACTTCAGAGAGATAG
1 TCCACTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGCAACTTCAGAGAGATAG
*
10089225 GATCTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATTAGATTTGCTATCTTC
66 GATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAA-TAGATTTGCTATCTTC
10089290 AGTCTGA
130 AGTCTGA
* *
10089297 TCCACTGCAATTTCAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGTAACTTCAGAGAGATAG
1 TCCACTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGCAACTTCAGAGAGATAG
*
10089362 GATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTT
66 GATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAAT-AGATTTGCTATCTTC
*
10089427 AGTCTGC
130 AGTCTGA
*
10089434 TCCACTGCAACTTCAGGGGGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
10089459 ATTAATGGCT
Statistics
Matches: 277, Mismatches: 17, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
136 5 0.02
137 240 0.87
138 4 0.01
140 28 0.10
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (136 bp):
TCCACTGCAACTTCAGGGAGATAAGGCTTGTTTTGACCTACTCTACTGCAACTTCAGAGAGATAG
GATCTGTAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAGATTTGCTATCTTCA
GTCTGA
Found at i:10104448 original size:39 final size:39
Alignment explanation
Indices: 10104402--10104480 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
10104392 ACGTAGGCAA
* * *
10104402 TATGGATGAAATGAAAGATGCAATGCGTGGATAAAAATT
1 TATGGATGAAATGAAAAATGCAATGCATGGAAAAAAATT
10104441 TATGGATGAAATGAAAAATGCAATGCATGGAAAAAAATT
1 TATGGATGAAATGAAAAATGCAATGCATGGAAAAAAATT
10104480 T
1 T
10104481 TGTATGATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.47, C:0.05, G:0.23, T:0.25
Consensus pattern (39 bp):
TATGGATGAAATGAAAAATGCAATGCATGGAAAAAAATT
Found at i:10111394 original size:19 final size:19
Alignment explanation
Indices: 10111370--10111409 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
10111360 AAAAAAAAAC
10111370 TTAAAACCTAGTAATGAAA
1 TTAAAACCTAGTAATGAAA
10111389 TTAAAACCTAGTAATGAAA
1 TTAAAACCTAGTAATGAAA
10111408 TT
1 TT
10111410 TAGAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (19 bp):
TTAAAACCTAGTAATGAAA
Found at i:10112372 original size:26 final size:24
Alignment explanation
Indices: 10112304--10112377 Score: 64
Period size: 23 Copynumber: 3.1 Consensus size: 24
10112294 ATAAAAACAC
*
10112304 TATTATTAAATTGTATTT-AATAA
1 TATTATTAAATTATATTTAAATAA
* * *
10112327 TAATATTAAAATATGA-TTAAATTATT
1 TATTATTAAATTAT-ATTTAAA-TA-A
10112353 TATTATTAAATTATATTT-AATAA
1 TATTATTAAATTATATTTAAATAA
10112376 TA
1 TA
10112378 ATTCTATTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
23 15 0.38
24 5 0.13
25 5 0.13
26 14 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (24 bp):
TATTATTAAATTATATTTAAATAA
Found at i:10112385 original size:26 final size:25
Alignment explanation
Indices: 10112306--10112388 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 25
10112296 AAAAACACTA
*
10112306 TTATTAAATTGTATTTAATAATAA-
1 TTATTAAATTATATTTAATAATAAT
* * * *
10112330 -TATTAAAATATGATTAAATTAT-TT
1 TTATTAAATTAT-ATTTAATAATAAT
10112354 ATTATTAAATTATATTTAATAATAAT
1 -TTATTAAATTATATTTAATAATAAT
10112380 TCTATTAAA
1 T-TATTAAA
10112389 ATTTAATAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
23 9 0.20
24 8 0.18
25 9 0.20
26 18 0.41
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (25 bp):
TTATTAAATTATATTTAATAATAAT
Found at i:10115363 original size:16 final size:18
Alignment explanation
Indices: 10115342--10115384 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
10115332 TTTTTATTAC
10115342 AATTTATATA-CT-AATA
1 AATTTATATATCTAAATA
*
10115358 AATTTATAATATTTAAATA
1 AATTTAT-ATATCTAAATA
10115377 AATTTATA
1 AATTTATA
10115385 AAACATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 3 0.13
18 2 0.09
19 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTATATATCTAAATA
Found at i:10119580 original size:22 final size:22
Alignment explanation
Indices: 10119549--10119590 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10119539 ATGCAATGAA
*
10119549 TGAATGAATGACAAATGAATAT
1 TGAATAAATGACAAATGAATAT
**
10119571 TGAATAAATGATGAATGAAT
1 TGAATAAATGACAAATGAAT
10119591 GTTAGTCATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATAT
Found at i:10123511 original size:32 final size:33
Alignment explanation
Indices: 10123465--10123532 Score: 120
Period size: 32 Copynumber: 2.1 Consensus size: 33
10123455 TAATTGGACC
*
10123465 ATTAGTTTGGGTTTGGGTATTTGGTTGAGTTTA
1 ATTAGGTTGGGTTTGGGTATTTGGTTGAGTTTA
10123498 ATTAGGTT-GGTTTGGGTATTTGGTTGAGTTTA
1 ATTAGGTTGGGTTTGGGTATTTGGTTGAGTTTA
10123530 ATT
1 ATT
10123533 GTTTAGGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 27 0.79
33 7 0.21
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.51
Consensus pattern (33 bp):
ATTAGGTTGGGTTTGGGTATTTGGTTGAGTTTA
Found at i:10124652 original size:24 final size:24
Alignment explanation
Indices: 10124607--10124654 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10124597 CATTAAAATT
* * *
10124607 TTGACGATTTTACCCTTTGTAAAA
1 TTGACAATTTTACCCATGGTAAAA
*
10124631 TTGACAATTTTACTCATGGTAAAA
1 TTGACAATTTTACCCATGGTAAAA
10124655 GTTCGAGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (24 bp):
TTGACAATTTTACCCATGGTAAAA
Found at i:10127416 original size:40 final size:40
Alignment explanation
Indices: 10127326--10127546 Score: 227
Period size: 40 Copynumber: 5.5 Consensus size: 40
10127316 CTCAAGTAAT
* * * *
10127326 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
10127364 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
10127404 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
10127444 CTTCGGGTCTTAGGCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
10127484 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
10127525 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
10127547 CATTCGAATA
Statistics
Matches: 149, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 90 0.60
41 27 0.18
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:10127533 original size:121 final size:118
Alignment explanation
Indices: 10127326--10127546 Score: 309
Period size: 121 Copynumber: 1.8 Consensus size: 118
10127316 CTCAAGTAAT
* * * *
10127326 CTTCGGGATTTAGCCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCA
1 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
* *
10127391 CTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
66 CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
* * * *
10127444 CTTCGGG-TCTTAGGCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAG
1 CTTCGGGAT-TTA-GCCGGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAG
10127508 TCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
63 TCA-CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
10127547 CATTCGAATA
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
117 1 0.01
118 10 0.11
119 18 0.20
120 27 0.30
121 33 0.37
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (118 bp):
CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
Found at i:10140689 original size:18 final size:18
Alignment explanation
Indices: 10140666--10140707 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
10140656 CTCCCTCTCA
10140666 AAAAATTCAAAAA-TATAT
1 AAAAATT-AAAAATTATAT
10140684 AAAAATTAAAAATTATAT
1 AAAAATTAAAAATTATAT
10140702 AAAAAT
1 AAAAAT
10140708 CATTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATTATAT
Found at i:10144371 original size:16 final size:17
Alignment explanation
Indices: 10144340--10144412 Score: 76
Period size: 18 Copynumber: 4.2 Consensus size: 17
10144330 ATATTCAATT
*
10144340 TATTTATATATTATATC
1 TATTTATATATTATATA
*
10144357 TATTT-TATTTTATATA
1 TATTTATATATTATATA
* *
10144373 TATTCTAAATATTTTATA
1 TATT-TATATATTATATA
*
10144391 TATTTATATATATTTATA
1 TATTTATATAT-TATATA
10144409 TATT
1 TATT
10144413 ATTATTTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
16 13 0.28
17 12 0.26
18 22 0.47
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTATATATTATATA
Found at i:10144385 original size:20 final size:19
Alignment explanation
Indices: 10144362--10144412 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
10144352 ATATCTATTT
*
10144362 TATTTTATATATATTCTAAA
1 TATTTTATATAT-TTATAAA
*
10144382 TATTTTATATATTTATATA
1 TATTTTATATATTTATAAA
10144401 TA-TTTATATATT
1 TATTTTATATATT
10144413 ATTATTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 10 0.34
19 7 0.24
20 12 0.41
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTTTATATATTTATAAA
Found at i:10144424 original size:20 final size:19
Alignment explanation
Indices: 10144337--10144426 Score: 65
Period size: 20 Copynumber: 4.5 Consensus size: 19
10144327 ATTATATTCA
*
10144337 ATTTATTTATATATTATATCT
1 ATTTATTT-TATATTAT-TAT
*
10144358 ATTTTATTTTATATATATTCT
1 A-TTTATTTTATAT-TATTAT
**
10144379 AAATATTTTATA-TATTTAT
1 ATTTATTTTATATTA-TTAT
*
10144398 ATATATTTATATATTATTAT
1 ATTTATTT-TATATTATTAT
*
10144418 TTTTATTTT
1 ATTTATTTT
10144427 TTTGTGTACA
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
18 2 0.03
19 11 0.19
20 23 0.40
21 12 0.21
22 10 0.17
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTATTTTATATTATTAT
Found at i:10147606 original size:17 final size:17
Alignment explanation
Indices: 10147584--10147617 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10147574 ATCCACTAAT
*
10147584 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
10147601 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
10147618 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:10152244 original size:17 final size:17
Alignment explanation
Indices: 10152222--10152255 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10152212 ATCCACTAAT
*
10152222 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
10152239 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
10152256 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:10164011 original size:12 final size:11
Alignment explanation
Indices: 10163987--10164038 Score: 54
Period size: 12 Copynumber: 4.7 Consensus size: 11
10163977 TTATAAAGAA
*
10163987 AATATATATAT
1 AATATATAAAT
10163998 AATAATATAAAT
1 AAT-ATATAAAT
10164010 AATATGATAAAT
1 AATAT-ATAAAT
*
10164022 -ATAAATAAA-
1 AATATATAAAT
10164031 AATATATA
1 AATATATA
10164039 CCATTTTACA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
10 11 0.31
11 8 0.23
12 16 0.46
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
AATATATAAAT
Found at i:10165658 original size:44 final size:43
Alignment explanation
Indices: 10165593--10166111 Score: 619
Period size: 44 Copynumber: 11.8 Consensus size: 43
10165583 AGCCGAAATG
* * *
10165593 TTCGATCTACTTTCTGACAATACAGAGACACCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATC
* * *
10165637 TTTGATCTGCTCTCTGGCAATACAGAGACGCCAAACCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATC
* * *
10165681 TTCGATCTGCTCTCTGACAATATAGAGGCGCCAAATGTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATC
* * *
10165725 TTCGATCTGCTCTCTGCCCATACAGAGACGTCAAATCTGTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATC
*
10165769 TTCGATCTGCTCTCTGACAATACAGAGTCGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATC
* * *
10165813 TTCGATCTACTTTC-GACAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATC
* * * * **
10165856 TTTGATATACTCTCTGAAAATACAGAGACGCTGAATCTGTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATC
*
10165900 TTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATC
* *
10165944 TTCGATCTGCTCTCTGACAATACAGAGATGTCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATC
*
10165988 TTTGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATCTGT-ATC
* * *
10166032 TTCAATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATC
* * * *
10166076 TTTGATATGCTCTCCGTCAATACAGAGACGCCAAAT
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT
10166112 GTCACCGGTA
Statistics
Matches: 412, Mismatches: 54, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
43 40 0.10
44 370 0.90
45 2 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (43 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTATC
Found at i:10187655 original size:14 final size:15
Alignment explanation
Indices: 10187626--10187657 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
10187616 AGAACCCGAT
10187626 TTTTAATTTCAAGAA
1 TTTTAATTTCAAGAA
10187641 TTTTAATTT-AAGAA
1 TTTTAATTTCAAGAA
10187655 TTT
1 TTT
10187658 CATTAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (15 bp):
TTTTAATTTCAAGAA
Found at i:10193621 original size:21 final size:22
Alignment explanation
Indices: 10193596--10193644 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
10193586 TTTTTTGTTA
*
10193596 TTGGGCCAT-TTAATTTGTATT
1 TTGGGCCATGTTAATTTGAATT
* *
10193617 TTGGGCCTTGTTATTTTGAATT
1 TTGGGCCATGTTAATTTGAATT
10193639 TTGGGC
1 TTGGGC
10193645 TTGGATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.14, C:0.10, G:0.24, T:0.51
Consensus pattern (22 bp):
TTGGGCCATGTTAATTTGAATT
Found at i:10193653 original size:22 final size:22
Alignment explanation
Indices: 10193609--10193653 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
10193599 GGCCATTTAA
* *
10193609 TTTGTATTTTGGGCCTTGTTAT
1 TTTGAATTTTGGGCCTTGATAT
10193631 TTTGAATTTTGGG-CTTGGATAT
1 TTTGAATTTTGGGCCTT-GATAT
10193653 T
1 T
10193654 ATTATGGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.13, C:0.07, G:0.24, T:0.56
Consensus pattern (22 bp):
TTTGAATTTTGGGCCTTGATAT
Found at i:10194929 original size:17 final size:17
Alignment explanation
Indices: 10194907--10194940 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10194897 CCCGTTAAAA
*
10194907 GTAAAAATCTCTAATTT
1 GTAAAAACCTCTAATTT
10194924 GTAAAAACCTCTAATTT
1 GTAAAAACCTCTAATTT
10194941 AAGTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (17 bp):
GTAAAAACCTCTAATTT
Found at i:10198367 original size:16 final size:17
Alignment explanation
Indices: 10198329--10198368 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
10198319 ATTTAATCCT
10198329 TTAAAATTTATAAAAACA
1 TTAAAA-TTATAAAAACA
10198347 -T-AAATTATAAAAA-A
1 TTAAAATTATAAAAACA
10198361 TTAAAATT
1 TTAAAATT
10198369 TCATCTGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
14 1 0.05
15 10 0.50
16 8 0.40
17 1 0.05
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAATTATAAAAACA
Found at i:10199238 original size:127 final size:129
Alignment explanation
Indices: 10199059--10199346 Score: 363
Period size: 127 Copynumber: 2.2 Consensus size: 129
10199049 AGTCCAACGA
* * *
10199059 AAAATCGAAACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATTGAACATTACCTT-
1 AAAATCGAAACCCAGCACGA-TAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTACCTTC
* * *
10199122 GTTTT-A-GAATTTAGAAAATATGCG-TGAAA-TTCTAAAGGAATATTTGATTATTTTGAACAAA
65 GTTTTAAGGAATTTACAAAATACG-GATGAAATTTC-AAAGGAATATTTGATTATTTCG-ACAAA
*
10199183 TAG
127 CAG
* * * *
10199186 GAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTCCCTTCG
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTACCTTCG
* *
10199251 TTTTAAGGAATTTTCAAAGTACGGATGAAATTTCAAAGGAATATTTGATTATTTCGACAAACAG
66 TTTTAAGGAATTTACAAAATACGGATGAAATTTCAAAGGAATATTTGATTATTTCGACAAACAG
* *
10199315 AAAATCGAAACCCAGCACGGTTGGGCACGATT
1 AAAATCGAAACCCAGCACGATAGGGCACGATT
10199347 GGGCACGATT
Statistics
Matches: 137, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
127 54 0.39
128 6 0.04
129 36 0.26
130 38 0.28
131 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (129 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAACATTACCTTCG
TTTTAAGGAATTTACAAAATACGGATGAAATTTCAAAGGAATATTTGATTATTTCGACAAACAG
Found at i:10202247 original size:44 final size:44
Alignment explanation
Indices: 10202198--10202413 Score: 136
Period size: 44 Copynumber: 4.9 Consensus size: 44
10202188 AGGCTCACTG
* *
10202198 TCTTCGATTTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
1 TCTTCGATTTGCTCCACTACTGCTTAGGGGGATAAGATCTACAA
*** * * * * *
10202242 TCTTCGGCCTGTTACC-CTACTACTTAGGGGGTTAAG-GCT-CATTG
1 TCTTCGATTTGCT-CCACTACTGCTTAGGGGGATAAGATCTACA--A
* *
10202286 TCTTTGATTTGCTCCACTACTGCTTAGGGGGATAAGATTTACAA
1 TCTTCGATTTGCTCCACTACTGCTTAGGGGGATAAGATCTACAA
*** * * * * **
10202330 TCTTCGGCCTGTTACC-CTACTACTTAGGGGGTTAAG-GCTCACTG
1 TCTTCGATTTGCT-CCACTACTGCTTAGGGGGATAAGATCT-ACAA
** *
10202374 TCTTCGATCCGCTCCACTACTGCTTAGGGAGATAAGATCT
1 TCTTCGATTTGCTCCACTACTGCTTAGGGGGATAAGATCT
10202414 GTGAATTCAC
Statistics
Matches: 123, Mismatches: 39, Indels: 19
0.68 0.22 0.10
Matches are distributed among these distances:
42 2 0.02
43 7 0.06
44 105 0.85
45 7 0.06
46 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (44 bp):
TCTTCGATTTGCTCCACTACTGCTTAGGGGGATAAGATCTACAA
Found at i:10202282 original size:88 final size:88
Alignment explanation
Indices: 10202164--10202413 Score: 421
Period size: 88 Copynumber: 2.9 Consensus size: 88
10202154 ATTTTTAGCT
*
10202164 TGTTACCCTACTACTTA-AGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
*
10202228 GACAAGATCTACAATCTTCGGCC
66 GATAAGATCTACAATCTTCGGCC
* * *
10202251 TGTTACCCTACTACTTAGGGGGTTAAGGCTCATTGTCTTTGATTTGCTCCACTACTGCTTAGGGG
1 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
*
10202316 GATAAGATTTACAATCTTCGGCC
66 GATAAGATCTACAATCTTCGGCC
**
10202339 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATCCGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
10202404 GATAAGATCT
66 GATAAGATCT
10202414 GTGAATTCAC
Statistics
Matches: 150, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 17 0.11
88 133 0.89
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (88 bp):
TGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTCTTCGATTTGCTCCACTACTGCTTAGGGA
GATAAGATCTACAATCTTCGGCC
Found at i:10203266 original size:53 final size:54
Alignment explanation
Indices: 10203186--10203347 Score: 164
Period size: 61 Copynumber: 2.9 Consensus size: 54
10203176 AAACCTCTTT
* *
10203186 GGTCTCAAAGTGCCCTTTACGGGTTTTCACTTTGACCTCTCTATTTT-TTTTAG
1 GGTCTCAAAGTGCCCTATACGGGTTTTCACCTTGACCTCTCTATTTTATTTTAG
* * *
10203239 GGTCTCAAAGTGCCCTATATGGGTTTTCACCTTGGTCTCTCTATTTTATTTTATTTTTTAG
1 GGTCTCAAAGTGCCCTATACGGGTTTTCACCTT-GAC-CTC---TCTATTTTA--TTTTAG
* * * * *
10203300 GGTCTCAAAGCGCCCTTTACGGGTTTTCACCTTGGCCTTTCTTTTTTA
1 GGTCTCAAAGTGCCCTATACGGGTTTTCACCTTGACCTCTCTATTTTA
10203348 GGTAAAATAC
Statistics
Matches: 89, Mismatches: 12, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
53 30 0.34
54 2 0.02
55 3 0.03
56 7 0.08
58 7 0.08
59 2 0.02
60 2 0.02
61 36 0.40
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (54 bp):
GGTCTCAAAGTGCCCTATACGGGTTTTCACCTTGACCTCTCTATTTTATTTTAG
Found at i:10203347 original size:61 final size:61
Alignment explanation
Indices: 10203231--10203347 Score: 180
Period size: 61 Copynumber: 1.9 Consensus size: 61
10203221 CCTCTCTATT
* * *
10203231 TTTTTTAGGGTCTCAAAGTGCCCTATATGGGTTTTCACCTTGGTCTCTCTATTTTATTTTA
1 TTTTTTAGGGTCTCAAAGCGCCCTATACGGGTTTTCACCTTGGCCTCTCTATTTTATTTTA
* * *
10203292 TTTTTTAGGGTCTCAAAGCGCCCTTTACGGGTTTTCACCTTGGCCTTTCTTTTTTA
1 TTTTTTAGGGTCTCAAAGCGCCCTATACGGGTTTTCACCTTGGCCTCTCTATTTTA
10203348 GGTAAAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.48
Consensus pattern (61 bp):
TTTTTTAGGGTCTCAAAGCGCCCTATACGGGTTTTCACCTTGGCCTCTCTATTTTATTTTA
Found at i:10214244 original size:129 final size:127
Alignment explanation
Indices: 10213957--10214263 Score: 334
Period size: 129 Copynumber: 2.4 Consensus size: 127
10213947 AGTCCAATGA
* * * * * *
10213957 AAAACCGAAACCCAGCACAGTAGGGCACGATTCCTCGAATTTCTAGACATTGAACATTGCCTCGT
1 AAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTCAT
* * * *
10214022 TTTAGAATTTAGAAAATATAAGTACAATTCTAAAGGAATATTCGATAATTTTGAACAAACAG
66 TTTAGAATTTACAAAATAGAAGTAAAATTCTAAAGGAATATTCGATAATTTCGAACAAACAG
* * * *
10214084 GAAATTGCAACCCAGCACGATAGGGCACGATTCC-CTGAATTTCCAAACATCGAACATTGCCTTC
1 AAAATCGAAACCCAGCACGGTAGGGCACGATTCCTC-GAATTTCCAAACATCGAACATTGCC-TC
* * * * *
10214148 ATTTTAAGGAATTTTCAAAGTACGGA-TGAAAATTC-AAAGGAATATTTGATTATTTCG-ACAAA
64 ATTTT-A-GAATTTACAAAATA-GAAGT-AAAATTCTAAAGGAATATTCGATAATTTCGAACAAA
10214210 CAG
125 CAG
* * *
10214213 AAAATCGAAACCCAGCACGGTTGGGCACGATTCCTCGAGTTCCCAAACATC
1 AAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATC
10214264 AACTATTACC
Statistics
Matches: 147, Mismatches: 26, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
126 1 0.01
127 50 0.34
128 6 0.04
129 51 0.35
130 32 0.22
131 7 0.05
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (127 bp):
AAAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATCGAACATTGCCTCAT
TTTAGAATTTACAAAATAGAAGTAAAATTCTAAAGGAATATTCGATAATTTCGAACAAACAG
Found at i:10214282 original size:129 final size:131
Alignment explanation
Indices: 10214047--10214295 Score: 310
Period size: 129 Copynumber: 1.9 Consensus size: 131
10214037 ATATAAGTAC
* * * *
10214047 AATTCTAAAGGAATATTCGATAATTTTGAACAAACAGGAAATTGCAACCCAGCACGATAGGGCAC
1 AATTCTAAAGGAATATTCGATAATTTCGAACAAACAGAAAATCGAAACCCAGCACGATAGGGCAC
* * *
10214112 GATTCCCTGAATTTCCAAACATCGAACATTGCCTTCATTTTAAG-GAATTTTCAAAGTACGGATG
66 GATTCCCTGAATTCCCAAACATCGAACATTACCTTCATTTT-AGTGAATCTTCAAAGTACGGATG
10214176 AA
130 AA
* * * *
10214178 AATTC-AAAGGAATATTTGATTATTTCG-ACAAACAGAAAATCGAAACCCAGCACGGTTGGGCAC
1 AATTCTAAAGGAATATTCGATAATTTCGAACAAACAGAAAATCGAAACCCAGCACGATAGGGCAC
* **
10214241 GATT-CCTCGAGTTCCCAAACATC-AACTATTACCTTTGTTTTAGTGAATCTTCAAA
66 GATTCCCT-GAATTCCCAAACATCGAAC-ATTACCTTCATTTTAGTGAATCTTCAAA
10214296 TAAACAGTTG
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
128 8 0.08
129 69 0.68
130 19 0.19
131 5 0.05
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (131 bp):
AATTCTAAAGGAATATTCGATAATTTCGAACAAACAGAAAATCGAAACCCAGCACGATAGGGCAC
GATTCCCTGAATTCCCAAACATCGAACATTACCTTCATTTTAGTGAATCTTCAAAGTACGGATGA
A
Found at i:10224036 original size:26 final size:26
Alignment explanation
Indices: 10224007--10224059 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10223997 TCAAACATGC
* *
10224007 ATTTAGGTCAATTTTAC-CCTAGGGGT
1 ATTTAGGTAAATTAT-CTCCTAGGGGT
*
10224033 ATTTCGGTAAATTATCTCCTAGGGGT
1 ATTTAGGTAAATTATCTCCTAGGGGT
10224059 A
1 A
10224060 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAAATTATCTCCTAGGGGT
Found at i:10237014 original size:10 final size:10
Alignment explanation
Indices: 10236989--10237047 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
10236979 CACTTGTATA
10236989 ATTTTTATTT
1 ATTTTTATTT
*
10236999 AATTTTATTT
1 ATTTTTATTT
*
10237009 CTTTTTTATTT
1 -ATTTTTATTT
*
10237020 ATTTTCATGTCT
1 ATTTTTAT-T-T
*
10237032 ATTTATATTT
1 ATTTTTATTT
10237042 ATTTTT
1 ATTTTT
10237048 TTACACATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
10 21 0.55
11 10 0.26
12 7 0.18
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:10237014 original size:21 final size:23
Alignment explanation
Indices: 10236989--10237047 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 23
10236979 CACTTGTATA
*
10236989 ATTTTTATTTAATTTT-ATTTCT
1 ATTTTTATTTAATTTTCATGTCT
10237011 -TTTTTATTT-ATTTTCATGTCT
1 ATTTTTATTTAATTTTCATGTCT
* *
10237032 ATTTATATTTATTTTT
1 ATTTTTATTTAATTTT
10237048 TTACACATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 5 0.16
21 14 0.45
22 8 0.26
23 4 0.13
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (23 bp):
ATTTTTATTTAATTTTCATGTCT
Found at i:10238608 original size:19 final size:17
Alignment explanation
Indices: 10238584--10238630 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 17
10238574 TTCATAACAA
10238584 TCATTTATCAAATATCATG
1 TCATTTAT-AAATATCA-G
10238603 TCATTTCAATAAATATCAG
1 TCATTT--ATAAATATCAG
10238622 TCATTTATA
1 TCATTTATA
10238631 TTCAATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.12
19 13 0.50
20 8 0.31
21 2 0.08
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.43
Consensus pattern (17 bp):
TCATTTATAAATATCAG
Found at i:10242666 original size:28 final size:27
Alignment explanation
Indices: 10242564--10242666 Score: 66
Period size: 28 Copynumber: 3.5 Consensus size: 27
10242554 AATCAGAGCT
* *
10242564 ATCTGGGCCTTAGCCCATATCAATATTA
1 ATCTGGGCC-TAGCCTATATCAATATCA
*
10242592 ATCTGGGCCATAGCCCCT-TA-CAGTATCAGA
1 ATCTGGGCC-TAG--CCTATATCAATATC--A
*
10242622 GTATACTGGGTCTAGCCTATATCAATATCA
1 --AT-CTGGGCCTAGCCTATATCAATATCA
10242652 ATCTGGGCCGTAGCC
1 ATCTGGGCC-TAGCC
10242667 CTATTACAAG
Statistics
Matches: 58, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
27 6 0.10
28 24 0.41
29 2 0.03
30 7 0.12
31 2 0.03
32 11 0.19
33 6 0.10
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCTGGGCCTAGCCTATATCAATATCA
Found at i:10242721 original size:20 final size:20
Alignment explanation
Indices: 10242696--10242735 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10242686 ATTGGGCCTT
10242696 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
10242716 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
10242736 CCTATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:10245234 original size:15 final size:15
Alignment explanation
Indices: 10245214--10245246 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
10245204 TATTCCTATC
10245214 TAATAATAATAATTA
1 TAATAATAATAATTA
*
10245229 TAATAATAATATTTA
1 TAATAATAATAATTA
10245244 TAA
1 TAA
10245247 ATATATCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:10245366 original size:19 final size:18
Alignment explanation
Indices: 10245329--10245372 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
10245319 ATACATACAG
10245329 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
10245346 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
10245365 TACTAATT
1 TAATAATT
10245373 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:10254291 original size:40 final size:40
Alignment explanation
Indices: 10254200--10254481 Score: 396
Period size: 40 Copynumber: 7.1 Consensus size: 40
10254190 CGGAATTTAA
** * *
10254200 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
10254240 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
10254280 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
10254319 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
*
10254359 CCGGATATAGTAACTCGCACAAATGCATTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
10254398 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
10254437 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
10254477 CCGGA
1 CCGGA
10254482 CATCATTCGA
Statistics
Matches: 218, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 106 0.49
40 109 0.50
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:10254333 original size:39 final size:39
Alignment explanation
Indices: 10254200--10254481 Score: 370
Period size: 39 Copynumber: 7.1 Consensus size: 39
10254190 CGGAATTTAA
** * *
10254200 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGC
* * *
10254240 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
* *
10254280 CCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGC
* *
10254319 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGG-GCTTAGC
* *
10254359 CCGGATATAGTAACTCGCACAAATGCATTCGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGC
*
10254398 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGC
10254437 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
10254477 CCGGA
1 CCGGA
10254482 CATCATTCGA
Statistics
Matches: 216, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
39 110 0.51
40 105 0.49
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGC
Found at i:10254334 original size:79 final size:79
Alignment explanation
Indices: 10254200--10254481 Score: 383
Period size: 79 Copynumber: 3.6 Consensus size: 79
10254190 CGGAATTTAA
** * * * *
10254200 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAA
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAA
*
10254263 TGCCTTCGGGACTTAAC
64 TGCCTTC-GGACTTAGC
* *
10254280 CCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATG
*
10254344 CCTTCGGATCTTAGT
66 CCTTCGGA-CTTAGC
* *
10254359 CCGGATATAGTAACTCGCACAAATGCATTCGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATG
10254423 CCTTCGGACTTAGC
66 CCTTCGGACTTAGC
10254437 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
10254482 CATCATTCGA
Statistics
Matches: 179, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
78 41 0.23
79 111 0.62
80 27 0.15
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATG
CCTTCGGACTTAGC
Found at i:10254440 original size:118 final size:119
Alignment explanation
Indices: 10254200--10254481 Score: 401
Period size: 118 Copynumber: 2.4 Consensus size: 119
10254190 CGGAATTTAA
** * * * *
10254200 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGCTCGGTTATAGTAACTCGCACAAAT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAT
* * * *
10254264 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGC
65 GCATTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
*
10254319 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCGCACAAA
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACAAA
*
10254382 TGCATTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
64 TGCATTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
10254437 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
10254482 CATCATTCGA
Statistics
Matches: 145, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
118 87 0.60
119 58 0.40
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
CATTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Done.