Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 42 of 253
Found at i:10951166 original size:44 final size:44
Alignment explanation
Indices: 10951107--10951191 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
10951097 AGTAATAATT
* *
10951107 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCATAA
1 TTAAATTTGCAATACTATTCGATATTTTATTAATTTATGCATAA
* *
10951151 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGCA
1 TTAAATTTGCAATACTATTCGATATTTTATTAATTTATGCA
10951192 ATTATAATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (44 bp):
TTAAATTTGCAATACTATTCGATATTTTATTAATTTATGCATAA
Found at i:10951221 original size:48 final size:43
Alignment explanation
Indices: 10951107--10951237 Score: 138
Period size: 48 Copynumber: 2.9 Consensus size: 43
10951097 AGTAATAATT
* *
10951107 TTAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCATAA
1 TTAAAATTTCAATACTATT-GATATTTTTTTCATTTATGCATAA
*
10951151 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAAATTT-CAATACTA-TTGATATTTTTTTCATTTATGC----ATAA
* *
10951199 TTAAAATTTCAATACTGCTTGATTTTTTTTTCATTTATG
1 TTAAAATTTCAATACT-ATTGATATTTTTTTCATTTATG
10951238 ATGTTTGCAT
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
43 5 0.07
44 28 0.38
45 2 0.03
48 32 0.44
49 6 0.08
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (43 bp):
TTAAAATTTCAATACTATTGATATTTTTTTCATTTATGCATAA
Found at i:10952230 original size:7 final size:7
Alignment explanation
Indices: 10952218--10952250 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
10952208 TAGTCGTTTC
10952218 GTATTTA
1 GTATTTA
10952225 GTATTTA
1 GTATTTA
10952232 GTATTTA
1 GTATTTA
10952239 GTATTTA
1 GTATTTA
10952246 GTATT
1 GTATT
10952251 ATGTATAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:10954161 original size:19 final size:19
Alignment explanation
Indices: 10954137--10954177 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
10954127 CTTCTTCGTT
10954137 AACTGAACGCAAAACCACC
1 AACTGAACGCAAAACCACC
* *
10954156 AACTGAACGTAAAACCGCC
1 AACTGAACGCAAAACCACC
10954175 AAC
1 AAC
10954178 ATCTCATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.34, G:0.12, T:0.07
Consensus pattern (19 bp):
AACTGAACGCAAAACCACC
Found at i:10955158 original size:19 final size:19
Alignment explanation
Indices: 10955134--10955170 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10955124 CACATGTATG
10955134 TGTACATTTATACTTTTTA
1 TGTACATTTATACTTTTTA
*
10955153 TGTACATTTGTACTTTTT
1 TGTACATTTATACTTTTT
10955171 TATCTCCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.11, G:0.08, T:0.59
Consensus pattern (19 bp):
TGTACATTTATACTTTTTA
Found at i:10956597 original size:30 final size:29
Alignment explanation
Indices: 10956554--10956614 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
10956544 CAAGTAGCTG
* * *
10956554 AAGCTAGTTAAATCGCATATTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTACTGCCA
10956583 AAGCTAGTTTAAATCGCACACTTACTGCCA
1 AAGCTAG-TTAAATCGCACACTTACTGCCA
10956613 AA
1 AA
10956615 ACTTCCGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTACTGCCA
Found at i:10959005 original size:126 final size:126
Alignment explanation
Indices: 10958840--10959220 Score: 552
Period size: 126 Copynumber: 3.0 Consensus size: 126
10958830 TTATAGCCTC
* *
10958840 ATTTTTCTACGAACTACTGTAGCGAAAA-AGCG-TCTACGTGGGAACTTTTTTCAAAAATTTTGT
1 ATTTTTCTACGAACTACTGTAGC-AAAAGAGCGTTC-ACGTGGGAGCTTTTTTCAGAAATTTTGT
* * *
10958903 TGACAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATTTACTCAGAATT
64 TGACAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* **
10958966 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGAGAGCTTTTTTCAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGAAATTTTGTTG
* * *
10959031 ACAGTGCATCCTACTTGAAGTGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * *
10959092 ATTTTTCTACGAACTACTATAGCAAAAGAGTGTCCACATGGGAGCTTTTTTCAGAAATTTTGCTT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGAAATTTTG-TT
* * *
10959157 -ACAGTGCATCCTGCTTGAAGCGTTTTTAATACTATTTGTTCAGAAACGTCTACTCAAAATT
65 GACAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
10959218 ATT
1 ATT
10959221 CTTGCAGAAG
Statistics
Matches: 228, Mismatches: 24, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
125 4 0.02
126 221 0.97
127 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGAAATTTTGTTG
ACAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:10959416 original size:8 final size:7
Alignment explanation
Indices: 10959405--10959434 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
10959395 TTAATAAATT
10959405 AACCCTTA
1 AACCC-TA
10959413 AACCCTA
1 AACCCTA
10959420 AACCCTA
1 AACCCTA
10959427 AACCCTA
1 AACCCTA
10959434 A
1 A
10959435 TTCAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
AACCCTA
Found at i:10959811 original size:20 final size:20
Alignment explanation
Indices: 10959770--10959857 Score: 116
Period size: 19 Copynumber: 4.7 Consensus size: 20
10959760 ACGATTATGT
10959770 ATCAATTAACCCTAAA-TTA
1 ATCAATTAACCCTAAATTTA
10959789 ATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAATTTA
*
10959809 ATCAATTAATCCT-AATTTA
1 ATCAATTAACCCTAAATTTA
*
10959828 ATCAA-T--CCCT-AATTAA
1 ATCAATTAACCCTAAATTTA
10959844 ATCAATTAACCCTA
1 ATCAATTAACCCTA
10959858 TACCCTATAC
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
16 13 0.21
17 1 0.02
18 1 0.02
19 31 0.51
20 15 0.25
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (20 bp):
ATCAATTAACCCTAAATTTA
Found at i:10959829 original size:39 final size:35
Alignment explanation
Indices: 10959770--10959857 Score: 113
Period size: 39 Copynumber: 2.4 Consensus size: 35
10959760 ACGATTATGT
*
10959770 ATCAATTAACCCTAAATTAATCAATTAACCCTAAATTTA
1 ATCAATTAACCCTAAATTAATCAA-T--CCCT-AATTAA
* *
10959809 ATCAATTAATCCTAATTTAATCAATCCCTAATTAA
1 ATCAATTAACCCTAAATTAATCAATCCCTAATTAA
10959844 ATCAATTAACCCTA
1 ATCAATTAACCCTA
10959858 TACCCTATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
35 18 0.40
36 4 0.09
38 1 0.02
39 22 0.49
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (35 bp):
ATCAATTAACCCTAAATTAATCAATCCCTAATTAA
Found at i:10959840 original size:16 final size:16
Alignment explanation
Indices: 10959819--10959849 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10959809 ATCAATTAAT
*
10959819 CCTAATTTAATCAATC
1 CCTAATTAAATCAATC
10959835 CCTAATTAAATCAAT
1 CCTAATTAAATCAAT
10959850 TAACCCTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (16 bp):
CCTAATTAAATCAATC
Found at i:10960412 original size:12 final size:12
Alignment explanation
Indices: 10960397--10960428 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
10960387 ATACTCTTTT
10960397 TTATATTAAACA
1 TTATATTAAACA
10960409 TTATATTAAACA
1 TTATATTAAACA
10960421 TTATATTA
1 TTATATTA
10960429 CTAGCAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (12 bp):
TTATATTAAACA
Found at i:10960743 original size:14 final size:14
Alignment explanation
Indices: 10960724--10960750 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10960714 CCTATTAATC
10960724 ATGGTTTATAAATT
1 ATGGTTTATAAATT
10960738 ATGGTTTATAAAT
1 ATGGTTTATAAAT
10960751 AAGATGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (14 bp):
ATGGTTTATAAATT
Found at i:10965300 original size:90 final size:91
Alignment explanation
Indices: 10965148--10965324 Score: 209
Period size: 90 Copynumber: 2.0 Consensus size: 91
10965138 ATAAAAAACT
* ** *
10965148 CTCAAACTTTTTTAAAAAATAAACAATTAAGCCATTACTTTTTTTTTCAATCAATCGGGTACTTG
1 CTCAAACTTTTTTAAAAAATAAACAATTAAGCCATTACTTTTTTTTGCAATCAATCAAGTACTTA
*
10965213 AACT-TTCAAAATGCATCAAAAAGTCC
66 AACTGTT-AAAATGCATAAAAAAGTCC
* * * * *
10965239 CTCAAAC-TTTTTCAAAAA-GAACAATTAAGCCACTGT-GTTTTTTTTGCACTCAATTAAGTACT
1 CTCAAACTTTTTTAAAAAATAAACAATTAAGCCA-T-TACTTTTTTTTGCAATCAATCAAGTACT
10965301 TAAACTGTTAAAATGCATAAAAAA
64 TAAACTGTTAAAATGCATAAAAAA
10965325 TGTACGTTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
89 13 0.18
90 50 0.68
91 10 0.14
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (91 bp):
CTCAAACTTTTTTAAAAAATAAACAATTAAGCCATTACTTTTTTTTGCAATCAATCAAGTACTTA
AACTGTTAAAATGCATAAAAAAGTCC
Found at i:10965491 original size:30 final size:28
Alignment explanation
Indices: 10965436--10965511 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 28
10965426 AATTATAAAA
*
10965436 AATAAAAATCAATAAAATTTATTAAATTTC
1 AATAAAAAT--ATAAAATATATTAAATTTC
*
10965466 AATAAAAATATAAACATATATTTAAATTTT
1 AATAAAAATATAAA-ATATA-TTAAATTTC
*
10965496 ATTAAAAAATATAAAA
1 AAT-AAAAATATAAAA
10965512 ATTGTAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 5 0.12
29 4 0.10
30 20 0.50
31 11 0.28
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (28 bp):
AATAAAAATATAAAATATATTAAATTTC
Found at i:10965549 original size:19 final size:19
Alignment explanation
Indices: 10965498--10965551 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
10965488 TAAATTTTAT
10965498 TAAAAA-ATATAAAAATTG
1 TAAAAATATATAAAAATTG
*
10965516 TAAAAATATAAAAAAATTG
1 TAAAAATATATAAAAATTG
* *
10965535 TAAAATTTTATAAAAAT
1 TAAAAATATATAAAAAT
10965552 CATAAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 6 0.19
19 25 0.81
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
TAAAAATATATAAAAATTG
Found at i:10965561 original size:48 final size:48
Alignment explanation
Indices: 10965468--10965559 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
10965458 TAAATTTCAA
*
10965468 TAAAAATATAAACATATATTTAAATTTTATTAAAAAATATAAAAATTG
1 TAAAAATATAAACATAAATTTAAATTTTATTAAAAAATATAAAAATTG
10965516 TAAAAATATAAA-A-AAATTGTAAAATTTTA-T-AAAAATCATAAAAA
1 TAAAAATATAAACATAAATT-T-AAATTTTATTAAAAAAT-ATAAAAA
10965560 ATATTAAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
46 10 0.25
47 10 0.25
48 20 0.50
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (48 bp):
TAAAAATATAAACATAAATTTAAATTTTATTAAAAAATATAAAAATTG
Found at i:10965801 original size:10 final size:10
Alignment explanation
Indices: 10965771--10965872 Score: 52
Period size: 10 Copynumber: 10.2 Consensus size: 10
10965761 TTTTACAAAA
10965771 TTTAT-ATTT
1 TTTATAATTT
*
10965780 CTTTATATTTT
1 -TTTATAATTT
10965791 TTTATAATTT
1 TTTATAATTT
* *
10965801 TCTTATGA--C
1 T-TTATAATTT
*
10965810 TTTATAATAT
1 TTTATAATTT
10965820 TTTATAAACTTT
1 TTTAT-AA-TTT
*
10965832 TTTCT-ATATT
1 TTTATAAT-TT
* *
10965842 TCTAT-ATAT
1 TTTATAATTT
10965851 TTTATAATTT
1 TTTATAATTT
*
10965861 TGTATAATTT
1 TTTATAATTT
10965871 TT
1 TT
10965873 AATTTTTTTA
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
8 5 0.07
9 7 0.10
10 41 0.59
11 10 0.14
12 6 0.09
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTATAATTT
Found at i:10965853 original size:21 final size:20
Alignment explanation
Indices: 10965771--10965853 Score: 62
Period size: 22 Copynumber: 4.0 Consensus size: 20
10965761 TTTTACAAAA
*
10965771 TTTATATTTCTTTATATTTT
1 TTTATATTTCTATATATTTT
*
10965791 TTTATAATTTTCT-TATGACTTT
1 TTTAT-A-TTTCTATAT-ATTTT
* * *
10965813 ATAATATTT-TATAAACTTTT
1 TTTATATTTCTATATA-TTTT
10965833 TTCTATATTTCTATATATTTT
1 TT-TATATTTCTATATATTTT
10965854 ATAATTTTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 13
0.70 0.12 0.19
Matches are distributed among these distances:
19 2 0.04
20 14 0.29
21 15 0.31
22 17 0.35
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (20 bp):
TTTATATTTCTATATATTTT
Found at i:10965866 original size:17 final size:17
Alignment explanation
Indices: 10965844--10965878 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
10965834 TCTATATTTC
10965844 TATATATTTTATAATTTTG
1 TATA-ATTTT-TAATTTTG
10965863 TATAATTTTTAATTTT
1 TATAATTTTTAATTTT
10965879 TTTATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 5 0.31
19 4 0.25
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TATAATTTTTAATTTTG
Found at i:10968074 original size:16 final size:16
Alignment explanation
Indices: 10968037--10968075 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
10968027 ATTTTGCTTA
10968037 AAATTCTTTAAAAATC
1 AAATTCTTTAAAAATC
10968053 ATAATT-TTTAAAAATAC
1 A-AATTCTTTAAAAAT-C
10968070 AAATTC
1 AAATTC
10968076 ATAAAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTCTTTAAAAATC
Found at i:10969068 original size:3 final size:3
Alignment explanation
Indices: 10969062--10969096 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10969052 TACATATATA
10969062 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10969097 ATGATATAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10972774 original size:3 final size:3
Alignment explanation
Indices: 10972766--10972803 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
10972756 TATTTAACAT
10972766 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10972804 TCTTTTACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10972857 original size:24 final size:23
Alignment explanation
Indices: 10972830--10972895 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 23
10972820 TAAGTAAATT
*
10972830 ATTTATTAATTTACATTTGTATTC
1 ATTTATTAA-TTACACTTGTATTC
10972854 ATTTTCATT-ATTACACTTGTATTC
1 A-TTT-ATTAATTACACTTGTATTC
* *
10972878 AATTATTACCTTACACTT
1 ATTTATTA-ATTACACTT
10972896 TTCACTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 3 0.09
23 2 0.06
24 23 0.66
25 4 0.11
26 3 0.09
ACGTcount: A:0.29, C:0.15, G:0.03, T:0.53
Consensus pattern (23 bp):
ATTTATTAATTACACTTGTATTC
Found at i:10974079 original size:18 final size:18
Alignment explanation
Indices: 10974058--10974092 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10974048 AAATAGTACT
* *
10974058 CAGTAATGGTAGTAGTAA
1 CAGTAACGGTAATAGTAA
10974076 CAGTAACGGTAATAGTA
1 CAGTAACGGTAATAGTA
10974093 TTCACCACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (18 bp):
CAGTAACGGTAATAGTAA
Found at i:10974139 original size:44 final size:45
Alignment explanation
Indices: 10974072--10974170 Score: 121
Period size: 44 Copynumber: 2.2 Consensus size: 45
10974062 AATGGTAGTA
** *
10974072 GTAACAGTAACGGTAATAGTATTC-ACCACACAAA-TGCTGAATAG
1 GTAACAGTAATAGTAATAATATTCGA-CACACAAAGTGCTGAATAG
* * *
10974116 GTAACGGTAATAGTAATAATATTCGACACACAAAGTGTTGAATCG
1 GTAACAGTAATAGTAATAATATTCGACACACAAAGTGCTGAATAG
10974161 GTAACAGTAA
1 GTAACAGTAA
10974171 CGGTAACGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
44 28 0.61
45 18 0.39
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.24
Consensus pattern (45 bp):
GTAACAGTAATAGTAATAATATTCGACACACAAAGTGCTGAATAG
Found at i:10974176 original size:12 final size:12
Alignment explanation
Indices: 10974159--10974193 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10974149 AGTGTTGAAT
10974159 CGGTAACAGTAA
1 CGGTAACAGTAA
*
10974171 CGGTAACGGTAA
1 CGGTAACAGTAA
*
10974183 CAGTAACAGTA
1 CGGTAACAGTA
10974194 GTCGGCACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:10974845 original size:22 final size:22
Alignment explanation
Indices: 10974803--10974848 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10974793 CTAACTAAAC
*
10974803 TCATATATTTTTCTTCTTCAAT
1 TCATATATTTTTATTCTTCAAT
*
10974825 TCATATCTTTTTATTAC-TCAAT
1 TCATATATTTTTATT-CTTCAAT
10974847 TC
1 TC
10974849 CCTACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.57
Consensus pattern (22 bp):
TCATATATTTTTATTCTTCAAT
Found at i:10977336 original size:14 final size:14
Alignment explanation
Indices: 10977317--10977348 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10977307 TTAGGATTTT
10977317 TTTTAATTTTTTAA
1 TTTTAATTTTTTAA
*
10977331 TTTTAATTTTTTTA
1 TTTTAATTTTTTAA
10977345 TTTT
1 TTTT
10977349 TGAGAAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTAATTTTTTAA
Found at i:10981895 original size:46 final size:45
Alignment explanation
Indices: 10981828--10981998 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
10981818 AACCCGCCCC
*
10981828 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT-CA
* *
10981874 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCA
* * * *
10981922 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATGCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT-CA
*
10981967 TAAGTGAACTCGGACTCAACTCAATGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
10981999 AATGCTCAAC
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCA
Found at i:10981940 original size:93 final size:93
Alignment explanation
Indices: 10981833--10982003 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
10981823 GCCCCTAAGT
* *
10981833 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10981898 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
* *
10981926 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATGCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10981991 TGAGTTCGAATGC
66 CGAGTTCGAATGC
10982004 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:10984410 original size:15 final size:15
Alignment explanation
Indices: 10984384--10984439 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
10984374 CAAGGAAACC
10984384 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
10984399 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
10984414 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
10984429 GAATAAAGAAA
1 GAATAAAGAAA
10984440 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:10988879 original size:27 final size:27
Alignment explanation
Indices: 10988849--10989026 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
10988839 ATATTAAGTC
* * *
10988849 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
10988876 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
10988904 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
10988931 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
10988958 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
10988985 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
10989012 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10989027 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:10988933 original size:55 final size:54
Alignment explanation
Indices: 10988849--10989026 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
10988839 ATATTAAGTC
* * *
10988849 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
10988904 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
10988958 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
10989012 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10989027 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:10989015 original size:81 final size:82
Alignment explanation
Indices: 10988870--10989025 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
10988860 TGCTATATAA
* *
10988870 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
10988935 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
10988952 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
10989015 ACACTTAGTGC
65 ACACTTAGTGC
10989026 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:10999532 original size:33 final size:33
Alignment explanation
Indices: 10999490--10999598 Score: 146
Period size: 33 Copynumber: 3.3 Consensus size: 33
10999480 CGTGTGACAT
* * *
10999490 GCCCGTGTGGGCACACATGCTCAACTCAGCCTA
1 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
*
10999523 GCTCATGTGGGCACACATGCCCAACTCGGCCTA
1 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
* * *
10999556 GCCCATGTGGGCTCACACGCCCAACTTGGCCTA
1 GCCCATGTGGGCACACATGCCCAACTCGGCCTA
*
10999589 GCCCGTGTGG
1 GCCCATGTGG
10999599 CTCATATTGT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.18, C:0.37, G:0.27, T:0.18
Consensus pattern (33 bp):
GCCCATGTGGGCACACATGCCCAACTCGGCCTA
Found at i:11002249 original size:28 final size:28
Alignment explanation
Indices: 11002196--11002249 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
11002186 CAGCAGAGTC
* *
11002196 GACCATATATCATTTAGGTGGTAGAATT
1 GACCATATATCATTTAGGCGGCAGAATT
* *
11002224 GACCATTTATCGTTTAGGCGGCAGAA
1 GACCATATATCATTTAGGCGGCAGAA
11002250 GCAACCAGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GACCATATATCATTTAGGCGGCAGAATT
Found at i:11005379 original size:15 final size:15
Alignment explanation
Indices: 11005341--11005382 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
11005331 TAGCTTAGAC
11005341 CGTGTGTCACAC-AT
1 CGTGTGTCACACAAT
* **
11005355 GGCCTGTCACACAAT
1 CGTGTGTCACACAAT
11005370 CGTGTGTCACACA
1 CGTGTGTCACACA
11005383 TGACCTACCA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (15 bp):
CGTGTGTCACACAAT
Found at i:11013374 original size:34 final size:34
Alignment explanation
Indices: 11013336--11013400 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
11013326 TGACAGTCTA
11013336 GTATCAGT-TAGGGCCTTAGCCCAATACAGTATCG
1 GTATCAGTGT-GGGCCTTAGCCCAATACAGTATCG
*
11013370 GTATCAGTGTGGGCCTTAGCCCAATTCAGTA
1 GTATCAGTGTGGGCCTTAGCCCAATACAGTA
11013401 ACAGTAACAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (34 bp):
GTATCAGTGTGGGCCTTAGCCCAATACAGTATCG
Found at i:11013673 original size:34 final size:34
Alignment explanation
Indices: 11013635--11013700 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
11013625 TCATACGTGT
11013635 ATGCAAAAATGTCATGCTCGAATATAGTCATATA
1 ATGCAAAAATGTCATGCTCGAATATAGTCATATA
11013669 ATGCAAAAATGTCATGCTCGAATATAGTCATA
1 ATGCAAAAATGTCATGCTCGAATATAGTCATA
11013701 CATATCATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (34 bp):
ATGCAAAAATGTCATGCTCGAATATAGTCATATA
Found at i:11020947 original size:25 final size:25
Alignment explanation
Indices: 11020919--11020971 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
11020909 AATTTGATAT
*
11020919 TTCAGCAGAGAAGGCATTGTTGAGA
1 TTCAGCAGAAAAGGCATTGTTGAGA
11020944 TTCAGCAGAAAAGGCATTGTTGAGA
1 TTCAGCAGAAAAGGCATTGTTGAGA
11020969 TTC
1 TTC
11020972 GCAAACTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (25 bp):
TTCAGCAGAAAAGGCATTGTTGAGA
Found at i:11021593 original size:15 final size:16
Alignment explanation
Indices: 11021559--11021597 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
11021549 CATAAAATTG
11021559 AGATTAATTTATAGGA
1 AGATTAATTTATAGGA
11021575 AGATTAATTTATA-GA
1 AGATTAATTTATAGGA
11021590 AGA-TAATT
1 AGATTAATT
11021598 AAATTATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 5 0.22
15 5 0.22
16 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (16 bp):
AGATTAATTTATAGGA
Found at i:11021857 original size:59 final size:62
Alignment explanation
Indices: 11021682--11021850 Score: 195
Period size: 63 Copynumber: 2.7 Consensus size: 62
11021672 ATATTATTTT
* ** *
11021682 TTAATATTATATATTATGATTTTTATT-CATTCATATTTTAATAATAATTATATT-AAGAATGTT
1 TTAA-ATTATATATTATTATCATTATTAAATT-ATA-TTTAATAATAATTATATTAAAGAATG-T
11021745 A
62 A
* * *
11021746 TTAAATTATATATTATTATCTTTATTAAATTATTTTTAATAATAATTATATTAAAGTATG-A
1 TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
*
11021807 TTAAATTATTTATTATT-T-ATTATTAAATTATATTTAATAATAAT
1 TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAAT
11021851 CCTATTATAA
Statistics
Matches: 95, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
59 24 0.25
60 1 0.01
61 17 0.18
62 18 0.19
63 28 0.29
64 7 0.07
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (62 bp):
TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
Found at i:11022301 original size:53 final size:53
Alignment explanation
Indices: 11022222--11022328 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
11022212 AGTGCGTTTC
11022222 TTCTAGGCCGCATGATCCATGACAATATCTTGATTGCCTAAGAGTTGTTACAT
1 TTCTAGGCCGCATGATCCATGACAATATCTTGATTGCCTAAGAGTTGTTACAT
11022275 TTCTAGGCCGCATGATCCATGACAATATCTTGATTGCCTAAGAGTTGTTACAT
1 TTCTAGGCCGCATGATCCATGACAATATCTTGATTGCCTAAGAGTTGTTACAT
11022328 T
1 T
11022329 ATCTCCAAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (53 bp):
TTCTAGGCCGCATGATCCATGACAATATCTTGATTGCCTAAGAGTTGTTACAT
Found at i:11024386 original size:28 final size:27
Alignment explanation
Indices: 11024337--11024428 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 27
11024327 AAATATATCA
11024337 AAATTAACCGAATTAG-CTGATTTAACTG
1 AAATTAA-CGAATTAGTC-GATTTAACTG
* *
11024365 AAAGTAACAGAATTAGTCGATTTAATTG
1 AAATTAAC-GAATTAGTCGATTTAACTG
* *
11024393 AAATTAACTAATATAGTCGATTTATCTG
1 AAATTAACGAAT-TAGTCGATTTAACTG
11024421 AAATTAAC
1 AAATTAAC
11024429 CGATTTTTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.07
28 50 0.91
29 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (27 bp):
AAATTAACGAATTAGTCGATTTAACTG
Found at i:11041709 original size:33 final size:33
Alignment explanation
Indices: 11041629--11041729 Score: 96
Period size: 34 Copynumber: 3.1 Consensus size: 33
11041619 CAATTTCTGT
* * *
11041629 TAGGGACTTAGCCCATTTCAGAATCAGAAACAG
1 TAGGGCCTAAGCCCATTTTAGAATCAGAAACAG
* * * * *
11041662 TGTGGGCCTGAGCCCATTTTAGTATCAGCATCAG
1 T-AGGGCCTAAGCCCATTTTAGAATCAGAAACAG
* *
11041696 TAGGGCCTAAGCCCATTATAGAATCA-ATACAG
1 TAGGGCCTAAGCCCATTTTAGAATCAGAAACAG
11041728 TA
1 TA
11041730 TGCAATCAGA
Statistics
Matches: 53, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
32 5 0.09
33 22 0.42
34 26 0.49
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (33 bp):
TAGGGCCTAAGCCCATTTTAGAATCAGAAACAG
Found at i:11044843 original size:13 final size:12
Alignment explanation
Indices: 11044820--11044853 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
11044810 TTTCTATTCA
11044820 TTTTGATTTTCC
1 TTTTGATTTTCC
11044832 TTTTGAATTTTCC
1 TTTTG-ATTTTCC
11044845 TTTTG-TTTT
1 TTTTGATTTT
11044854 GCATGCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.19
12 5 0.24
13 12 0.57
ACGTcount: A:0.09, C:0.12, G:0.09, T:0.71
Consensus pattern (12 bp):
TTTTGATTTTCC
Found at i:11055433 original size:49 final size:46
Alignment explanation
Indices: 11055360--11055576 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 46
11055350 GTAAGGTGCT
*
11055360 GATGCCATGTCCCAGACATAGTCTTACACTAGCTATCATCTTCGAGGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGC-ATCATC-TCGAGGCC
* *
11055409 GATGCCATGTCCCAGACATGGTCTTACA-TTGACA-CATCTCGTA-GTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAG-CATCATCTCG-AGGCC
* * * * *
11055455 AATG-CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCAT-CATCTCGAGGCC
** * * * **
11055501 GATG-CATGTCTTAGACATGTTTTACACTAGCACTCGTCTCAATACC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCGAGGCC
11055547 GATGCCATGTCCCAGACATCGTCTTACACT
1 GATGCCATGTCCCAGACAT-GTCTTACACT
11055577 GGCTCCCATA
Statistics
Matches: 136, Mismatches: 23, Indels: 19
0.76 0.13 0.11
Matches are distributed among these distances:
44 9 0.07
45 16 0.12
46 53 0.39
47 18 0.13
48 12 0.09
49 28 0.21
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCATCATCTCGAGGCC
Found at i:11069946 original size:13 final size:13
Alignment explanation
Indices: 11069928--11069954 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11069918 GAGTGATCCA
11069928 CACTTGTAGCAGC
1 CACTTGTAGCAGC
11069941 CACTTGTAGCAGC
1 CACTTGTAGCAGC
11069954 C
1 C
11069955 CTTCTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (13 bp):
CACTTGTAGCAGC
Found at i:11072762 original size:13 final size:13
Alignment explanation
Indices: 11072740--11072772 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11072730 AAGGATTTGT
11072740 TTAT-TAAACTAA
1 TTATCTAAACTAA
11072752 TTATCTAAACTAA
1 TTATCTAAACTAA
*
11072765 TTAACTAA
1 TTATCTAA
11072773 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:11074196 original size:46 final size:48
Alignment explanation
Indices: 11073969--11074235 Score: 184
Period size: 46 Copynumber: 5.6 Consensus size: 48
11073959 GCGTTTATCA
* * *
11073969 ATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCTTTGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-TACTCATC-TCGAGGCCG
* * * *
11074018 ATGCCATGTCCTAGACATGGTCTTACACTAGTTCTCACATATCCG-TGCC-
1 ATGCCATGTCCCAGACATGGTCTTACACTAGTACT--CATCT-CGAGGCCG
* *
11074067 ATTGCCATG-CCCAGACATGGTCTTACACT-G-ACACATCTCGTA-ACCG
1 A-TGCCATGTCCCAGACATGGTCTTACACTAGTACTCATCTCG-AGGCCG
* * *
11074113 ATG-CATGTCTCAGACAT-GTCTTACACT-G-GCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGTAC-T-CATCTCGAGGCCG
* * * *
11074159 ATG-CATGTCCCAGACAT-GTCTTACACTAGTACTCGTCTCAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGTACTCATCTCGAGGCCG
* *
11074205 ATGTCGTGTCCCA-AGCATGGTCTTACACTAG
1 ATGCCATGTCCCAGA-CATGGTCTTACACTAG
11074236 CTCTCATAAT
Statistics
Matches: 178, Mismatches: 23, Indels: 35
0.75 0.10 0.15
Matches are distributed among these distances:
44 18 0.10
45 17 0.10
46 50 0.28
47 14 0.08
48 15 0.08
49 50 0.28
50 10 0.06
51 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGTACTCATCTCGAGGCCG
Found at i:11078087 original size:25 final size:25
Alignment explanation
Indices: 11078041--11078088 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
11078031 AACTTTTCTT
*
11078041 TAGGTAAAATCGACAAAGCAAAAAG
1 TAGGTAAAATCGACAAACCAAAAAG
*
11078066 TAGGTAAAATCGA-AAACCCAAAA
1 TAGGTAAAATCGACAAACCAAAAA
11078089 CCAAAACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (25 bp):
TAGGTAAAATCGACAAACCAAAAAG
Found at i:11079459 original size:46 final size:44
Alignment explanation
Indices: 11079392--11079500 Score: 139
Period size: 46 Copynumber: 2.4 Consensus size: 44
11079382 TAATTAGTTT
11079392 AGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCCAGTGTA
1 AGACATGTCTGGGACATGCATCGG-CTACGAGACGT--GCCAGTGTA
* * * *
11079438 AGACATGTCTGAGACATGCATCGGTTACGAGATGTGTCAGTGTA
1 AGACATGTCTGGGACATGCATCGGCTACGAGACGTGCCAGTGTA
11079482 AGACCATGTCTGGGACATG
1 AGA-CATGTCTGGGACATG
11079501 GCAATGGCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
44 11 0.20
45 15 0.27
46 30 0.54
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
AGACATGTCTGGGACATGCATCGGCTACGAGACGTGCCAGTGTA
Found at i:11083815 original size:107 final size:107
Alignment explanation
Indices: 11083624--11083900 Score: 369
Period size: 107 Copynumber: 2.6 Consensus size: 107
11083614 CCCACCATCA
* * *
11083624 CGATGGCTGAGATCCTACATATGTTTTC-GATTCTCGACAGCTTGTATGAGCATCATCGTGAACT
1 CGATGGCTGAGATCCTACATATG-TTGCGGATTCTCGACAGCTTGTGTGAGCAGCATCGTGAACT
* *
11083688 GGTGAATTGAATGGCTACTCTATTATGAAGACATAGACCGTTC
65 GGTGAATTGAATGACTACTCTATTATGAAGACATAGACCATTC
* *
11083731 CGATAGCTGAGATCCTACATATGTTGCGGATTCTCAACAGCTTGTGTGAGCAGCATCGTGAACTG
1 CGATGGCTGAGATCCTACATATGTTGCGGATTCTCGACAGCTTGTGTGAGCAGCATCGTGAACTG
* *
11083796 GTGAATTGAATGACTACTCTATTATGATGATATAGACCATTC
66 GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATTC
* * * * * * * *
11083838 TGATGGTTGAGATCTTGCATATATTGCGGATTCTTGTCAGCTTGTGTGAACAGTC-TCGTGAAC
1 CGATGGCTGAGATCCTACATATGTTGCGGATTCTCGACAGCTTGTGTGAGCAG-CATCGTGAAC
11083901 CCTACGAAAA
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
106 3 0.02
107 145 0.97
108 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (107 bp):
CGATGGCTGAGATCCTACATATGTTGCGGATTCTCGACAGCTTGTGTGAGCAGCATCGTGAACTG
GTGAATTGAATGACTACTCTATTATGAAGACATAGACCATTC
Found at i:11085042 original size:19 final size:19
Alignment explanation
Indices: 11085018--11085056 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
11085008 ATTAAATGGA
11085018 GTTAGTAGATAATTATGAT
1 GTTAGTAGATAATTATGAT
11085037 GTTAGTAGATAATTATGAT
1 GTTAGTAGATAATTATGAT
11085056 G
1 G
11085057 ATTCATCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (19 bp):
GTTAGTAGATAATTATGAT
Found at i:11086025 original size:24 final size:25
Alignment explanation
Indices: 11085993--11086048 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
11085983 CAGCTTGAAA
*
11085993 GAGCATCCCATTATTAGC-CTTCTC
1 GAGCATCCCATTAATAGCTCTTCTC
* *
11086017 GAGCTTCCCATTAATAGCTCTTC-G
1 GAGCATCCCATTAATAGCTCTTCTC
11086041 GAGCATCC
1 GAGCATCC
11086049 TAATTGGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.30
Consensus pattern (25 bp):
GAGCATCCCATTAATAGCTCTTCTC
Found at i:11086202 original size:25 final size:25
Alignment explanation
Indices: 11086096--11086213 Score: 80
Period size: 25 Copynumber: 4.7 Consensus size: 25
11086086 ACAGCTCTTA
* * * *
11086096 TGAGCTTTCGGATTATGGCTCTTTG
1 TGAGCTTCCGGATAATGGCTATCTG
* * *
11086121 TGAGCTTCCCGTTAATTGGCTATTTG
1 TGAGCTTCCGGATAA-TGGCTATCTG
* **
11086147 TGAGCTTCCTGATAA-GGCTCGCT-
1 TGAGCTTCCGGATAATGGCTATCTG
*
11086170 TGAACTTCCGGATATATGGCTATCTG
1 TGAGCTTCCGGATA-ATGGCTATCTG
*
11086196 -GAGCTTCCCGATTAATGG
1 TGAGCTTCCGGA-TAATGG
11086214 TTCTTCGGAG
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
23 12 0.17
24 6 0.08
25 30 0.42
26 24 0.33
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.36
Consensus pattern (25 bp):
TGAGCTTCCGGATAATGGCTATCTG
Found at i:11088160 original size:6 final size:7
Alignment explanation
Indices: 11088140--11088165 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
11088130 AGGCGCGTCG
11088140 CAGCCCC
1 CAGCCCC
11088147 CAGCCCC
1 CAGCCCC
11088154 CAGCCCC
1 CAGCCCC
11088161 CAGCC
1 CAGCC
11088166 TACAGCACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.69, G:0.15, T:0.00
Consensus pattern (7 bp):
CAGCCCC
Found at i:11089422 original size:26 final size:26
Alignment explanation
Indices: 11089384--11089435 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11089374 TATTATTTTA
*
11089384 TATATATAATTTCTTTTAAATCTATT
1 TATATATAATTTCTTTCAAATCTATT
*
11089410 TATATATATTTTCTTTCAAATCTATT
1 TATATATAATTTCTTTCAAATCTATT
11089436 ATGTACATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.58
Consensus pattern (26 bp):
TATATATAATTTCTTTCAAATCTATT
Found at i:11092174 original size:24 final size:25
Alignment explanation
Indices: 11092147--11092198 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
11092137 GCCTAGCCTC
*
11092147 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
11092171 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
11092196 TTT
1 TTT
11092199 CGCACGACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:11092273 original size:21 final size:22
Alignment explanation
Indices: 11092249--11092306 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
11092239 AATGAGTATA
*
11092249 TCATGGCATATCATGTGCAT-C
1 TCATGACATATCATGTGCATAC
11092270 TCATGACATATCATGTGCATAC
1 TCATGACATATCATGTGCATAC
*
11092292 -CATGTCATATCATGT
1 TCATGACATATCATGT
11092307 ATTAACAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (22 bp):
TCATGACATATCATGTGCATAC
Found at i:11092306 original size:10 final size:10
Alignment explanation
Indices: 11092246--11092306 Score: 68
Period size: 10 Copynumber: 5.9 Consensus size: 10
11092236 TATAATGAGT
*
11092246 ATATCATGGC
1 ATATCATGTC
11092256 ATATCATGTGC
1 ATATCATGT-C
* *
11092267 ATCTCATGAC
1 ATATCATGTC
11092277 ATATCATGTGC
1 ATATCATGT-C
*
11092288 ATACCATGTC
1 ATATCATGTC
11092298 ATATCATGT
1 ATATCATGT
11092307 ATTAACAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
10 25 0.60
11 17 0.40
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (10 bp):
ATATCATGTC
Found at i:11100332 original size:24 final size:25
Alignment explanation
Indices: 11100305--11100356 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
11100295 GCCTAGCCTC
*
11100305 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
**
11100329 TTTTGGTAAACTGGGGAAAAGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
11100354 TTT
1 TTT
11100357 CGCACTACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGAAAAGCCCT
Found at i:11100419 original size:10 final size:10
Alignment explanation
Indices: 11100404--11100463 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
11100394 TATAATGAGT
11100404 ATATCATGGC
1 ATATCATGGC
11100414 ATATCATGTGC
1 ATATCATG-GC
* *
11100425 ATCTCATGAC
1 ATATCATGGC
11100435 ATATCATGTGC
1 ATATCATG-GC
* *
11100446 ATACCATGTC
1 ATATCATGGC
*
11100456 AAATCATG
1 ATATCATG
11100464 TATAACAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 23 0.57
11 17 0.43
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (10 bp):
ATATCATGGC
Found at i:11100426 original size:11 final size:11
Alignment explanation
Indices: 11100390--11100464 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
11100380 GCCCAACCCA
*
11100390 TGCATATAATG
1 TGCATATCATG
* *
11100401 AGTATATCATG
1 TGCATATCATG
11100412 -GCATATCATG
1 TGCATATCATG
*
11100422 TGCATCTCATG
1 TGCATATCATG
*
11100433 -ACATATCATG
1 TGCATATCATG
*
11100443 TGCATACCATG
1 TGCATATCATG
*
11100454 T-CAAATCATG
1 TGCATATCATG
11100464 T
1 T
11100465 ATAACAATAT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 25 0.49
11 26 0.51
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (11 bp):
TGCATATCATG
Found at i:11100426 original size:32 final size:32
Alignment explanation
Indices: 11100390--11100454 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
11100380 GCCCAACCCA
* *
11100390 TGCATATAATGAGTATATCATG-GCATATCATG
1 TGCATATAATGA-CATATCATGTGCATACCATG
* *
11100422 TGCATCTCATGACATATCATGTGCATACCATG
1 TGCATATAATGACATATCATGTGCATACCATG
11100454 T
1 T
11100455 CAAATCATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 8 0.29
32 20 0.71
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (32 bp):
TGCATATAATGACATATCATGTGCATACCATG
Found at i:11100431 original size:21 final size:22
Alignment explanation
Indices: 11100407--11100464 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
11100397 AATGAGTATA
*
11100407 TCATGGCATATCATGTGCAT-C
1 TCATGACATATCATGTGCATAC
11100428 TCATGACATATCATGTGCATAC
1 TCATGACATATCATGTGCATAC
* *
11100450 -CATGTCAAATCATGT
1 TCATGACATATCATGT
11100465 ATAACAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (22 bp):
TCATGACATATCATGTGCATAC
Found at i:11105694 original size:26 final size:26
Alignment explanation
Indices: 11105658--11105719 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
11105648 GGAAAGGTAC
11105658 GTATATGAAATAAGCTATAATGTTGA
1 GTATATGAAATAAGCTATAATGTTGA
* *
11105684 GTATATGAAATGAGCTATGATGTTGA
1 GTATATGAAATAAGCTATAATGTTGA
*
11105710 ATATAT-AAAT
1 GTATATGAAAT
11105720 GGATAGTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 4 0.12
26 29 0.88
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (26 bp):
GTATATGAAATAAGCTATAATGTTGA
Found at i:11122364 original size:14 final size:14
Alignment explanation
Indices: 11122345--11122371 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11122335 TCGATGGTAA
11122345 AAAAATAAATAAAT
1 AAAAATAAATAAAT
11122359 AAAAATAAATAAA
1 AAAAATAAATAAA
11122372 AATATTCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAATAAATAAAT
Found at i:11122366 original size:10 final size:10
Alignment explanation
Indices: 11122351--11122375 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
11122341 GTAAAAAAAT
11122351 AAATAAATAA
1 AAATAAATAA
11122361 AAATAAATAA
1 AAATAAATAA
11122371 AAATA
1 AAATA
11122376 TTCGAGGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AAATAAATAA
Found at i:11124526 original size:50 final size:50
Alignment explanation
Indices: 11124451--11124677 Score: 355
Period size: 50 Copynumber: 4.5 Consensus size: 50
11124441 CCATGGCAAC
* *
11124451 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGG
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
*
11124501 AAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
*
11124551 AAGTAATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* * *
11124601 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
* **
11124651 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTAATAGCTTCGGCTAC
11124678 CTGATCAGTG
Statistics
Matches: 163, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 141 0.87
51 22 0.13
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
Found at i:11124691 original size:31 final size:31
Alignment explanation
Indices: 11124653--11124863 Score: 325
Period size: 31 Copynumber: 6.8 Consensus size: 31
11124643 ACAAATGACA
11124653 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
11124684 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
11124715 AGTGAAAAGTGGTAGCTTCTGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
11124746 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
11124777 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
11124808 AATGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
11124839 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
11124864 AAGTGACAAG
Statistics
Matches: 165, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
30 1 0.01
31 162 0.98
32 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:11124935 original size:46 final size:49
Alignment explanation
Indices: 11124885--11125010 Score: 177
Period size: 49 Copynumber: 2.6 Consensus size: 49
11124875 GATTTCCGTA
* * *
11124885 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
*
11124931 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
* *
11124980 TAAGACTATAGCTGGGCTATGACATCGATAT
1 TAAGACCATAGCTGGGCTATGGCATCGATAT
11125011 ATGAAGATGT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
46 24 0.34
47 1 0.01
48 13 0.18
49 33 0.46
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
Found at i:11125745 original size:20 final size:18
Alignment explanation
Indices: 11125706--11125745 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
11125696 CGTGTGACTC
*
11125706 TCTAAAGTGTGAAAATTT
1 TCTAAAGTGTGAAAAGTT
11125724 TCTAAAGTGTTGCAAAAGTT
1 TCTAAAGTG-TG-AAAAGTT
11125744 TC
1 TC
11125746 ATATGTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 2 0.11
20 8 0.42
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (18 bp):
TCTAAAGTGTGAAAAGTT
Found at i:11140521 original size:27 final size:27
Alignment explanation
Indices: 11140483--11140534 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
11140473 TGTATTAAGC
11140483 ATAAATTTTTTGTTGGAAAAAAAGGGA
1 ATAAATTTTTTGTTGGAAAAAAAGGGA
11140510 ATAAATTTTTTGTTGGAAAAAAAGG
1 ATAAATTTTTTGTTGGAAAAAAAGG
11140535 AAAAAAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (27 bp):
ATAAATTTTTTGTTGGAAAAAAAGGGA
Found at i:11148006 original size:19 final size:19
Alignment explanation
Indices: 11147982--11148041 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 19
11147972 ACAAAATAAC
11147982 TCAAAATAATTTTTAAAAT
1 TCAAAATAATTTTTAAAAT
*
11148001 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TTAAAAT
11148020 TCCAAAATTTATATTTTTAAAA
1 T-CAAAA--TA-ATTTTTAAAA
11148042 AATAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 4 0.12
19 14 0.42
20 5 0.15
22 1 0.03
23 5 0.15
24 4 0.12
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (19 bp):
TCAAAATAATTTTTAAAAT
Found at i:11148169 original size:3 final size:3
Alignment explanation
Indices: 11148161--11148212 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
11148151 CTAAAGTATC
11148161 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11148209 TTA T
1 TTA T
11148213 GCTTTGAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11148509 original size:3 final size:3
Alignment explanation
Indices: 11148501--11148539 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
11148491 ATTCTCCCTA
11148501 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11148540 AGTTTTGGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11148607 original size:3 final size:3
Alignment explanation
Indices: 11148599--11148629 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
11148589 AAGATTACAA
11148599 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
11148630 GCCATAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:11152830 original size:46 final size:46
Alignment explanation
Indices: 11152780--11152951 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
11152770 TGAGCATCCA
11152780 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
11152826 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
11152873 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
11152919 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
11152952 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:11152932 original size:93 final size:93
Alignment explanation
Indices: 11152773--11152943 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
11152763 GGATGGTTGA
* *
11152773 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
11152838 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
11152866 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
11152931 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
11152944 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:11161674 original size:15 final size:15
Alignment explanation
Indices: 11161654--11161682 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11161644 GTAAGGTTTT
11161654 TTAATTTTAATTTAA
1 TTAATTTTAATTTAA
11161669 TTAATTTTAATTTA
1 TTAATTTTAATTTA
11161683 GTTTTAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTAATTTTAATTTAA
Found at i:11162783 original size:11 final size:11
Alignment explanation
Indices: 11162767--11162792 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11162757 ATCGCCTCTT
11162767 CCTTCGTTCTA
1 CCTTCGTTCTA
11162778 CCTTCGTTCTA
1 CCTTCGTTCTA
11162789 CCTT
1 CCTT
11162793 TGCCTCCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.38, G:0.08, T:0.46
Consensus pattern (11 bp):
CCTTCGTTCTA
Found at i:11165820 original size:16 final size:16
Alignment explanation
Indices: 11165801--11165842 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
11165791 TTATTAAATT
*
11165801 ATATATTTTAATTATA
1 ATATATTTTAATAATA
11165817 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
11165832 AT-TATGTTTAA
1 ATATAT-TTTAA
11165843 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:11165827 original size:15 final size:15
Alignment explanation
Indices: 11165792--11165833 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
11165782 ATTAAGAATT
*
11165792 TATTAAATTAT-ATA
1 TATTTAATTATAATA
11165806 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
11165820 TATTTAATAATAAT
1 TATTTAATTATAAT
11165834 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:11165973 original size:18 final size:17
Alignment explanation
Indices: 11165945--11165979 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
11165935 ATTATTAAGA
*
11165945 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
11165962 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
11165980 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:11166076 original size:157 final size:156
Alignment explanation
Indices: 11165777--11166092 Score: 551
Period size: 157 Copynumber: 2.0 Consensus size: 156
11165767 ATAAGAATAT
* *
11165777 TAATTATTAAGAATTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTTA
*
11165842 AATATGATTAAAATATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
11165907 AATAATTTACCAAAACAAATTTCTGC
131 AATAATTTACCAAAACAAATTTATGC
*
11165933 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATTTTT
1 TAATTATTAAGAA-TTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
* *
11165998 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAATAATAACAA
65 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
11166063 TAATCATTTACCAAAACAAATTTATGC
130 TAATAATTTACCAAAACAAATTTATGC
11166090 TAA
1 TAA
11166093 GGGTATTCTA
Statistics
Matches: 151, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
156 13 0.09
157 138 0.91
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTTA
AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTATGC
Found at i:11166236 original size:16 final size:16
Alignment explanation
Indices: 11166215--11166282 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
11166205 GATTTGCTAT
11166215 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
11166231 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
11166247 TACAGCTCTAATCTAA
1 TACACCTCTAATCCAA
* *
11166263 TACACATCTAATCTAA
1 TACACCTCTAATCCAA
11166279 TACA
1 TACA
11166283 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.40, C:0.31, G:0.01, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:11166700 original size:22 final size:21
Alignment explanation
Indices: 11166651--11166700 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
11166641 TTTGAGAATG
*
11166651 TTAATCAATTAAAAATTAATA
1 TTAATTAATTAAAAATTAATA
* *
11166672 TTCAATTAATTGAAAATTGATA
1 TT-AATTAATTAAAAATTAATA
11166694 TGTAATT
1 T-TAATT
11166701 TTAGTTGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.08
22 21 0.88
23 1 0.04
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (21 bp):
TTAATTAATTAAAAATTAATA
Found at i:11169386 original size:20 final size:20
Alignment explanation
Indices: 11169356--11169400 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
11169346 CTGTTTTATT
11169356 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
11169375 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
11169395 ATGGGC
1 ATGGGC
11169401 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:11170438 original size:29 final size:30
Alignment explanation
Indices: 11170403--11170462 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
11170393 AAAATTATTT
11170403 TAAATTTTG-TTTT-CAAAGTGCACAAAGAA
1 TAAA-TTTGATTTTACAAAGTGCACAAAGAA
*
11170432 TAAATTTGAATTTTACTAAGTGCACAAAGAA
1 TAAATTTG-ATTTTACAAAGTGCACAAAGAA
11170463 GTGGCACACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 4 0.15
29 4 0.15
30 4 0.15
31 15 0.56
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (30 bp):
TAAATTTGATTTTACAAAGTGCACAAAGAA
Found at i:11172853 original size:20 final size:20
Alignment explanation
Indices: 11172823--11172867 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
11172813 CTGTTTTGTT
11172823 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
*
11172842 ATGGGCCCAACTGTATTGAT
1 ATGGGCCCAACTGTATTGAA
11172862 ATGGGC
1 ATGGGC
11172868 AAGGCCCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:11174515 original size:3 final size:3
Alignment explanation
Indices: 11174507--11174858 Score: 144
Period size: 3 Copynumber: 112.7 Consensus size: 3
11174497 GTTTCTTTAC
* *
11174507 TTA TTA TTA -CA TTA TTAA TTGA TCTA TTA TTA CTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TT-A TT-A T-TA TTA TTA TTA TTA TTA TTA TTA
* * * ** * *
11174553 TTCA CTA TTA CTA TTA TTT TCTA ACA TTA TTA TTA CTA TTA CTA TTA
1 TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
11174600 TTTA TTTA TTTA TTTA TT- TATA TCA TTG TTG TTA TTA TTA TTA TTCC
1 -TTA -TTA -TTA -TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A
* * *
11174647 TGA TT- TTA TTA TTA TTGG TGTA TTA TTA TTA TTA TTC TTCA TT- TTA
1 TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TT-A TTA TTA
* * * *
11174693 TTA TTA TTT TCTA TT- TTA TCA TTTA TTA TTA TTA TTTA TTA TCA ATA
1 TTA TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * * *
11174740 TTA TTA TTA TCA TTG CTA TTT TTA TT- TTCA TTA CTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* * * ** *
11174785 TTA TTTA CTA TTA TTTA TTA TCA TTA TTA TCA CCA TT- TCCTA CTA TTA
1 TTA -TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA TTA
* *
11174833 TTA TTA TTA TTA TCA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
11174859 TATTTGTTTA
Statistics
Matches: 260, Mismatches: 63, Indels: 52
0.69 0.17 0.14
Matches are distributed among these distances:
2 13 0.05
3 199 0.77
4 46 0.18
5 2 0.01
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:11174717 original size:25 final size:24
Alignment explanation
Indices: 11174667--11174749 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
11174657 ATTATTGGTG
* *
11174667 TATTATTATTATTATTCT-TCATTT
1 TATTATTATTTTTATTTTATCA-TT
11174691 TATTATTATTTTCTATTTTATCATT
1 TATTATTATTTT-TATTTTATCATT
11174716 TATTATTATTATTTA--TTATCAATAT
1 TATTATTATT-TTTATTTTATC-AT-T
11174741 TATTATTAT
1 TATTATTAT
11174750 CATTGCTATT
Statistics
Matches: 52, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.10
24 13 0.25
25 29 0.56
26 5 0.10
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (24 bp):
TATTATTATTTTTATTTTATCATT
Found at i:11174763 original size:71 final size:70
Alignment explanation
Indices: 11174667--11174814 Score: 160
Period size: 71 Copynumber: 2.1 Consensus size: 70
11174657 ATTATTGGTG
* * * *
11174667 TATTATTATTATTATTCTTCATTTTATTATT-ATTTTCTAT-TTTATCATT-TATTATTATTATT
1 TATTATTATTATCATTCTT-ATTTTATT-TTCA-TTACTATCATTATCATTAT-TTACTATTATT
11174729 TATTATCAA
62 TATTATCAA
*
11174738 TATTATTATTATCATTGC-TATTTTTATTTTCATTACTATCATTATTATTATTTACTATTATTTA
1 TATTATTATTATCATT-CTTA-TTTTATTTTCATTACTATCATTATCATTATTTACTATTATTTA
*
11174802 TTATCAT
64 TTATCAA
11174809 TATTAT
1 TATTAT
11174815 CACCATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
70 9 0.14
71 55 0.83
72 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (70 bp):
TATTATTATTATCATTCTTATTTTATTTTCATTACTATCATTATCATTATTTACTATTATTTATT
ATCAA
Found at i:11176967 original size:18 final size:18
Alignment explanation
Indices: 11176941--11176975 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11176931 AAATAAACAC
* *
11176941 ATAATTATTCAATTAATT
1 ATAACTATTCAAATAATT
11176959 ATAACTATTCAAATAAT
1 ATAACTATTCAAATAAT
11176976 ATTATTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAACTATTCAAATAATT
Found at i:11180648 original size:12 final size:13
Alignment explanation
Indices: 11180631--11180660 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
11180621 AATTTAAAAG
11180631 ATAAAAAATT-AA
1 ATAAAAAATTAAA
11180643 ATAAAAAATTAAA
1 ATAAAAAATTAAA
11180656 ATAAA
1 ATAAA
11180661 TTTCTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
ATAAAAAATTAAA
Found at i:11181921 original size:16 final size:16
Alignment explanation
Indices: 11181884--11181923 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
11181874 ATTTTGGCAC
*
11181884 TCTTTTTTTCCTACTT
1 TCTTTTGTTCCTACTT
*
11181900 TC-TTTGTTCCTATTT
1 TCTTTTGTTCCTACTT
11181915 TCTTTTGTT
1 TCTTTTGTT
11181924 TTAGTTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.05, C:0.20, G:0.05, T:0.70
Consensus pattern (16 bp):
TCTTTTGTTCCTACTT
Found at i:11181936 original size:15 final size:15
Alignment explanation
Indices: 11181891--11181938 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
11181881 CACTCTTTTT
*
11181891 TTCCTACTTTCTTTG
1 TTCCTATTTTCTTTG
11181906 TTCCTATTTTCTTTTG
1 TTCCTATTTTC-TTTG
*
11181922 TT-TTAGTTTTCTTTG
1 TTCCTA-TTTTCTTTG
11181937 TT
1 TT
11181939 ATTGTTTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.06, C:0.17, G:0.08, T:0.69
Consensus pattern (15 bp):
TTCCTATTTTCTTTG
Found at i:11193578 original size:6 final size:6
Alignment explanation
Indices: 11193563--11193591 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
11193553 CATTAAACTG
11193563 GAAAAA -AAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
11193592 TAGTGAGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:11193959 original size:3 final size:3
Alignment explanation
Indices: 11193951--11193976 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
11193941 GCCTTCATTA
11193951 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
11193977 GTGCATCAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:11194188 original size:26 final size:26
Alignment explanation
Indices: 11194152--11194203 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11194142 TTATTAAAGT
11194152 AAGATGTTTAATAAATATGAAATTTA
1 AAGATGTTTAATAAATATGAAATTTA
11194178 AAGATGTTTAATAAATATGAAATTTA
1 AAGATGTTTAATAAATATGAAATTTA
11194204 TGATACACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (26 bp):
AAGATGTTTAATAAATATGAAATTTA
Found at i:11194532 original size:6 final size:6
Alignment explanation
Indices: 11194523--11194556 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
11194513 CCCAACCCTA
*
11194523 ATATCT ATATCT ATATCT ATATTT ATATCT ATAT
1 ATATCT ATATCT ATATCT ATATCT ATATCT ATAT
11194557 AATTTCCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (6 bp):
ATATCT
Found at i:11195603 original size:25 final size:25
Alignment explanation
Indices: 11195557--11195607 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
11195547 ACAGATAAGG
11195557 TGTGTAACAAAAAAAACTAAAAAAT
1 TGTGTAACAAAAAAAACTAAAAAAT
* * *
11195582 TGTG-AACGAAAAAAAGTCAAAAAT
1 TGTGTAACAAAAAAAACTAAAAAAT
11195606 TG
1 TG
11195608 GACTATTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.20
Consensus pattern (25 bp):
TGTGTAACAAAAAAAACTAAAAAAT
Found at i:11199876 original size:42 final size:43
Alignment explanation
Indices: 11199820--11199914 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
11199810 GAGATTTATG
** * *
11199820 TGTAAGACCATGTCTGGAACATTGGCATC-ATATTTGATTTCA
1 TGTAAGACCATGTCTGGAACAGAGGCATCGATAATTGATTACA
* * *
11199862 TGTAAGACCCTGTCTGGGATAGAGGCATCGATAATTGATTACA
1 TGTAAGACCATGTCTGGAACAGAGGCATCGATAATTGATTACA
11199905 TGTAAGACCA
1 TGTAAGACCA
11199915 CGTTTGGGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 24 0.55
43 20 0.45
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGAACAGAGGCATCGATAATTGATTACA
Found at i:11199932 original size:43 final size:43
Alignment explanation
Indices: 11199820--11199932 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
11199810 GAGATTTATG
* * * * *
11199820 TGTAAGACCATGTCTGGAACA-TTGGCATCATATTTGATTTCA
1 TGTAAGACCCTGTCTGGGATAGTTGGCATCATAATTGATTACA
*
11199862 TGTAAGACCCTGTCTGGGATAG-AGGCATCGATAATTGATTACA
1 TGTAAGACCCTGTCTGGGATAGTTGGCATC-ATAATTGATTACA
*
11199905 TGTAAGACCAC-GTTTGGGAT-GTTGGCAT
1 TGTAAGACC-CTGTCTGGGATAGTTGGCAT
11199933 TGTACGAGTC
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 25 0.42
43 33 0.56
44 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGATAGTTGGCATCATAATTGATTACA
Found at i:11202492 original size:40 final size:40
Alignment explanation
Indices: 11202433--11202526 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
11202423 CATGGTATCA
11202433 CACACTTAGTGCCACATATAG-CAAAAGCTAT-TCAAATTCG
1 CACACTTAGTGCCACATATAGCCAAAA-CTATCTCAAA-TCG
* ** *
11202473 CACACTTTGTGCCTTATATAGCCAAAACTTTCTCAAATCG
1 CACACTTAGTGCCACATATAGCCAAAACTATCTCAAATCG
11202513 CACA-TTAAGTGCCA
1 CACACTT-AGTGCCA
11202527 AACATAGTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
39 2 0.04
40 33 0.73
41 10 0.22
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCACATATAGCCAAAACTATCTCAAATCG
Found at i:11205705 original size:30 final size:30
Alignment explanation
Indices: 11205647--11205706 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
11205637 TTCCCGAGCC
*
11205647 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATACAAAAGTT
* *
11205677 TAGGGGCAAAA-TGGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATACAAAAGTT
11205707 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATACAAAAGTT
Found at i:11206416 original size:49 final size:50
Alignment explanation
Indices: 11206349--11206595 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
11206339 AGCTATTGTG
* * * *
11206349 AGGTCACGTGTGTTGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
11206399 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * * *
11206449 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
11206499 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
11206549 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
11206596 CTTCGGCTAC
Statistics
Matches: 163, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:11206546 original size:101 final size:98
Alignment explanation
Indices: 11206352--11206590 Score: 316
Period size: 100 Copynumber: 2.4 Consensus size: 98
11206342 TATTGTGAGG
* * * * *
11206352 TCACGTGTGTTGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTGGTCACATGTGTAGTACT
* *
11206417 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* *
11206452 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTT-GGTCACATGTGTAGTAC
* *
11206517 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTGA
* * * *
11206551 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
11206591 GATAGCTTCG
Statistics
Matches: 122, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 36 0.30
100 44 0.36
101 42 0.34
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:11208782 original size:51 final size:51
Alignment explanation
Indices: 11208696--11208807 Score: 188
Period size: 51 Copynumber: 2.2 Consensus size: 51
11208686 TGAGTACTTC
*
11208696 TGATCAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
* *
11208747 TGATAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
*
11208798 TGACAAGTGA
1 TGATAAGTGA
11208808 TAAATGTGAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (51 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAG
Found at i:11219382 original size:12 final size:12
Alignment explanation
Indices: 11219365--11219392 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
11219355 ATTTAAAAAT
11219365 TTAATATTTTTA
1 TTAATATTTTTA
11219377 TTAATATTTTTA
1 TTAATATTTTTA
11219389 TTAA
1 TTAA
11219393 AAAAACGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTAATATTTTTA
Found at i:11220609 original size:162 final size:162
Alignment explanation
Indices: 11220332--11220854 Score: 775
Period size: 162 Copynumber: 3.2 Consensus size: 162
11220322 TTTGATACAG
* * ** * *
11220332 TGTCTATTGCTAATAGCTTTGGGAGATTACAAACTCCGAAGATATGGGACTGCTCCCAATTGGAA
1 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGAAA
*
11220397 GAAATAATCCAAGGCTCAGAAGTGT-AAGACATAAACCTCCAAAGTTTAAGGGAAGTAAAAGTTA
66 GAAATAATCCAAGGCTCAGAAGTGTCAA-ACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTA
* *
11220461 GAAACTACCATAATTTGAGGTATCTCTTCCCAA
130 GAAACTGCAATAATTTGAGGTATCTCTTCCCAA
*
11220494 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTTTGAAGATATGAGACTGCTCCCAATTGAAA
1 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGAAA
* *
11220559 G-AATAATTCAAGGCTCAGAAGTGTCAAACATAAGCCTCCAAAGTTTTAAGGGAAGTAGAAGTTA
66 GAAATAATCCAAGGCTCAGAAGTGTCAAACATAAGCCTCCAAAG-TTTAAGGGAAGTAAAAGTTA
*
11220623 GAAACTGCAATAATTTGATGTATCTCTTCCCAA
130 GAAACTGCAATAATTTGAGGTATCTCTTCCCAA
* * * * *
11220656 TATCTATTGCTAATAGCCTTAGGAGAGATTGCAAACTATGCAGATAAGTGACTGCTTCCAATT-A
1 TGTCTATTGCTAATAGCCTT-GG-GAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGA
*
11220720 GAAGAAATAATCCAAAGCTCAGAAGTGTCAAACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGT
64 -AAGAAATAATCCAAGGCTCAGAAGTGTCAAACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGT
11220785 T-GAAAACTGCAATAATTTGAGGTATCTCTTCCCAA
128 TAG-AAACTGCAATAATTTGAGGTATCTCTTCCCAA
* *
11220820 TGTTTATTGCTAATAGCCTTGGGGGATTGCAAACT
1 TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACT
11220855 CTAGAGAGGT
Statistics
Matches: 329, Mismatches: 25, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
161 37 0.11
162 142 0.43
163 6 0.02
164 104 0.32
165 40 0.12
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (162 bp):
TGTCTATTGCTAATAGCCTTGGGAGATTGCAAACTATGAAGATATGAGACTGCTCCCAATTGAAA
GAAATAATCCAAGGCTCAGAAGTGTCAAACATAAGCCTCCAAAGTTTAAGGGAAGTAAAAGTTAG
AAACTGCAATAATTTGAGGTATCTCTTCCCAA
Found at i:11225097 original size:20 final size:20
Alignment explanation
Indices: 11225072--11225110 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11225062 GATAATCATC
*
11225072 GTAGGTATCGATACTAATGA
1 GTAGGTATCGATACCAATGA
*
11225092 GTAGGTATTGATACCAATG
1 GTAGGTATCGATACCAATG
11225111 TAAAAATCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
GTAGGTATCGATACCAATGA
Found at i:11230289 original size:15 final size:15
Alignment explanation
Indices: 11230269--11230298 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11230259 CATTTTATTT
*
11230269 ATATTAGGATAATTA
1 ATATTAAGATAATTA
11230284 ATATTAAGATAATTA
1 ATATTAAGATAATTA
11230299 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:11230326 original size:27 final size:26
Alignment explanation
Indices: 11230265--11230327 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
11230255 ACTCCATTTT
11230265 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
11230292 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
11230320 ATTTTATT
1 ATTTTATT
11230328 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:11234076 original size:5 final size:5
Alignment explanation
Indices: 11234062--11234112 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
11234052 GCAACCCAAT
*
11234062 TTTTA TTTTTA TTTTA TTTTA TTTTA -TTTA TTTT- TTTCT- TATTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA
11234111 TT
1 TT
11234113 ATTTATTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
4 8 0.20
5 27 0.68
6 5 0.12
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:11234078 original size:11 final size:11
Alignment explanation
Indices: 11234062--11234119 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
11234052 GCAACCCAAT
11234062 TTTTATTTTTA
1 TTTTATTTTTA
11234073 TTTTA-TTTTA
1 TTTTATTTTTA
*
11234083 TTTTATTTATTT
1 TTTTATTT-TTA
* *
11234095 TTTTCTTATTA
1 TTTTATTTTTA
11234106 TTTTATTATTTA
1 TTTTATT-TTTA
11234118 TT
1 TT
11234120 ATTTTCAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
10 10 0.26
11 15 0.39
12 13 0.34
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:11234118 original size:15 final size:15
Alignment explanation
Indices: 11234064--11234124 Score: 56
Period size: 15 Copynumber: 3.9 Consensus size: 15
11234054 AACCCAATTT
11234064 TTATTT-TTATTTTA
1 TTATTTATTATTTTA
11234078 TTTTATTTTATTTATTTT-
1 --TTA-TTTA-TTATTTTA
11234096 TT-TCTTATTATTTTA
1 TTAT-TTATTATTTTA
11234111 TTATTTATTATTTT
1 TTATTTATTATTTT
11234125 CAGATATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
14 8 0.21
15 15 0.38
16 6 0.15
17 3 0.08
19 7 0.18
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (15 bp):
TTATTTATTATTTTA
Found at i:11234122 original size:33 final size:33
Alignment explanation
Indices: 11234061--11234123 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
11234051 AGCAACCCAA
* *
11234061 TTTTTATTTTTATTTTATTTTATTTTATTTATT
1 TTTTTATTATTATTTTATTTTATATTATTTATT
*
11234094 TTTTTCTTATTATTTTATTATT-TATTATTT
1 TTTTTATTATTATTTTATT-TTATATTATTT
11234124 TCAGATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (33 bp):
TTTTTATTATTATTTTATTTTATATTATTTATT
Done.