Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 54 of 253
Found at i:14880901 original size:40 final size:40
Alignment explanation
Indices: 14880856--14880939 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
14880846 TAAAAACATA
*
14880856 AAAACAAATATTAAAACAAGAAACAAA-TAAAAATGATACT
1 AAAACAAATATTAAAACAAGAAACAAATTAAAAAT-ATAAT
* * * *
14880896 AAAACAATTCTTAAAACAATACACAAATTAAAAATATAAT
1 AAAACAAATATTAAAACAAGAAACAAATTAAAAATATAAT
14880936 AAAA
1 AAAA
14880940 AAGTGGTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 31 0.82
41 7 0.18
ACGTcount: A:0.67, C:0.11, G:0.02, T:0.20
Consensus pattern (40 bp):
AAAACAAATATTAAAACAAGAAACAAATTAAAAATATAAT
Found at i:14881125 original size:21 final size:21
Alignment explanation
Indices: 14881100--14881188 Score: 56
Period size: 21 Copynumber: 4.1 Consensus size: 21
14881090 ATTATCACTA
14881100 AAACAACATCAAAACAACACC
1 AAACAACATCAAAACAACACC
* * * *
14881121 AAACAGCATAAAAATAGCA-C
1 AAACAACATCAAAACAACACC
* * *
14881141 AAAAAAGCAGC-AAACAACACGAA
1 AAACAA-CATCAAAACAACAC--C
*
14881164 AAACAACATCACCAACAACACC
1 AAACAACATCA-AAACAACACC
14881186 AAA
1 AAA
14881189 ACAGTACTAA
Statistics
Matches: 47, Mismatches: 15, Indels: 11
0.64 0.21 0.15
Matches are distributed among these distances:
20 11 0.23
21 17 0.36
22 6 0.13
23 5 0.11
24 8 0.17
ACGTcount: A:0.62, C:0.28, G:0.06, T:0.04
Consensus pattern (21 bp):
AAACAACATCAAAACAACACC
Found at i:14886524 original size:19 final size:20
Alignment explanation
Indices: 14886489--14886528 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
14886479 TCTGTCCATC
14886489 TTAGAAAAAACCCTTTTGTT
1 TTAGAAAAAACCCTTTTGTT
*
14886509 TTAGAGAAAA-CCTTTTGTT
1 TTAGAAAAAACCCTTTTGTT
14886528 T
1 T
14886529 GTTGAGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
TTAGAAAAAACCCTTTTGTT
Found at i:14888826 original size:40 final size:40
Alignment explanation
Indices: 14888763--14888983 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
14888753 ATTCGGATTG
14888763 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14888802 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
14888842 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14888882 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14888922 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
14888962 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
14888984 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 29 0.17
40 141 0.83
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:14896912 original size:40 final size:40
Alignment explanation
Indices: 14896849--14897029 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
14896839 ATTCGGATTG
14896849 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14896888 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
14896928 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
14896968 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
14897008 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
14897030 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 29 0.22
40 101 0.78
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:14898737 original size:13 final size:13
Alignment explanation
Indices: 14898719--14898743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14898709 GGGCTCACAC
14898719 GCCCATGTGGCCA
1 GCCCATGTGGCCA
14898732 GCCCATGTGGCC
1 GCCCATGTGGCC
14898744 CACACAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
GCCCATGTGGCCA
Found at i:14900198 original size:21 final size:21
Alignment explanation
Indices: 14900174--14900224 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
14900164 AGATTAAATT
* *
14900174 TTAATTATACATTAGTTATTA
1 TTAATTATACATAAATTATTA
*
14900195 TTAAGTT-TATATAAATTATTA
1 TTAA-TTATACATAAATTATTA
*
14900216 TTTATTATA
1 TTAATTATA
14900225 AAATATTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
TTAATTATACATAAATTATTA
Found at i:14900226 original size:17 final size:16
Alignment explanation
Indices: 14900200--14900233 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14900190 TATTATTAAG
*
14900200 TTTATATAAATTATTA
1 TTTATATAAAATATTA
14900216 TTTATTATAAAATATTA
1 TTTA-TATAAAATATTA
14900233 T
1 T
14900234 CATACTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATATAAAATATTA
Found at i:14902421 original size:20 final size:20
Alignment explanation
Indices: 14902375--14902428 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 20
14902365 TGATGTGGAC
* *
14902375 GATTTATTTTAATGATAGAT
1 GATTTTTTTTAATGAAAGAT
*
14902395 GACATTTTTTTTAATGAAATAT
1 G--ATTTTTTTTAATGAAAGAT
14902417 GATTTTTTTTAA
1 GATTTTTTTTAA
14902429 ACTTGTGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.41
22 17 0.59
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (20 bp):
GATTTTTTTTAATGAAAGAT
Found at i:14902954 original size:19 final size:19
Alignment explanation
Indices: 14902924--14903019 Score: 69
Period size: 19 Copynumber: 5.1 Consensus size: 19
14902914 ATTTTGAATG
14902924 AATTATTAAAAATATTACAA
1 AATTA-TAAAAATATTACAA
14902944 AATTATAAAAA-ATTATTCAA
1 AATTATAAAAATATTA--CAA
14902964 AA--ATAATAAA-ATTACAA
1 AATTATAA-AAATATTACAA
**
14902981 AAAAATAAAAATTATTA-AA
1 AATTATAAAAA-TATTACAA
* *
14903000 AATCATAAAATTATTA-AA
1 AATTATAAAAATATTACAA
14903018 AA
1 AA
14903020 CTGCAAAAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 16
0.78 0.04 0.19
Matches are distributed among these distances:
17 5 0.08
18 20 0.30
19 27 0.41
20 14 0.21
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTATAAAAATATTACAA
Found at i:14903010 original size:18 final size:18
Alignment explanation
Indices: 14902948--14903019 Score: 87
Period size: 18 Copynumber: 4.1 Consensus size: 18
14902938 TTACAAAATT
14902948 ATAA-AAAATTATTCAAAA
1 ATAATAAAATTATT-AAAA
*
14902966 ATAATAAAATTA-CAAAA
1 ATAATAAAATTATTAAAA
14902983 A-AATAAAAATTATTAAAA
1 ATAAT-AAAATTATTAAAA
*
14903001 ATCATAAAATTATTAAAA
1 ATAATAAAATTATTAAAA
14903019 A
1 A
14903020 CTGCAAAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
16 3 0.06
17 12 0.26
18 23 0.49
19 9 0.19
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (18 bp):
ATAATAAAATTATTAAAA
Found at i:14903019 original size:10 final size:10
Alignment explanation
Indices: 14902924--14903019 Score: 73
Period size: 10 Copynumber: 10.2 Consensus size: 10
14902914 ATTTTGAATG
14902924 AATTATTAAA
1 AATTATTAAA
14902934 AA-TATTACAA
1 AATTATTA-AA
*
14902944 AATTATAAAA
1 AATTATTAAA
14902954 AATTATTCAAA
1 AATTATT-AAA
*
14902965 AA-TAAT-AA
1 AATTATTAAA
*
14902973 AATTA-CAAA
1 AATTATTAAA
*
14902982 AA--AATAAA
1 AATTATTAAA
14902990 AATTATTAAA
1 AATTATTAAA
*
14903000 AATCA-T-AA
1 AATTATTAAA
14903008 AATTATTAAA
1 AATTATTAAA
14903018 AA
1 AA
14903020 CTGCAAAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
7 1 0.01
8 15 0.22
9 13 0.19
10 30 0.44
11 9 0.13
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (10 bp):
AATTATTAAA
Found at i:14903019 original size:35 final size:36
Alignment explanation
Indices: 14902937--14903012 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 36
14902927 TATTAAAAAT
**
14902937 ATTACAAAATTATAAAAAATTATTCAAAAATAATAAA
1 ATTACAAAAAAAT-AAAAATTATTCAAAAATAATAAA
*
14902974 ATTACAAAAAAATAAAAATTATT-AAAAATCATAAA
1 ATTACAAAAAAATAAAAATTATTCAAAAATAATAAA
14903009 ATTA
1 ATTA
14903013 TTAAAAACTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 15 0.42
36 10 0.28
37 11 0.31
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (36 bp):
ATTACAAAAAAATAAAAATTATTCAAAAATAATAAA
Found at i:14904200 original size:16 final size:16
Alignment explanation
Indices: 14904163--14904201 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
14904153 TGAAAGAAGA
* *
14904163 TATTTCGTTTAATTTT
1 TATTTTGTTCAATTTT
14904179 TAATTTTGTTCAATTTT
1 T-ATTTTGTTCAATTTT
14904196 TATTTT
1 TATTTT
14904202 TTTTATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (16 bp):
TATTTTGTTCAATTTT
Found at i:14904320 original size:17 final size:17
Alignment explanation
Indices: 14904300--14904338 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
14904290 TTTAAGAACA
14904300 TTTTTTAAT-TTTATAAT
1 TTTTTTAATATTT-TAAT
14904317 TTTTTTAATATTTTAAT
1 TTTTTTAATATTTTAAT
14904334 TTTTT
1 TTTTT
14904339 CCAATAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTAATATTTTAAT
Found at i:14904338 original size:8 final size:8
Alignment explanation
Indices: 14904299--14904338 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
14904289 ATTTAAGAAC
14904299 ATTTTTTA
1 ATTTTTTA
*
14904307 ATTTTATA
1 ATTTTTTA
14904315 ATTTTTTTA
1 A-TTTTTTA
*
14904324 ATATTTTA
1 ATTTTTTA
14904332 ATTTTTT
1 ATTTTTT
14904339 CCAATAAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
ATTTTTTA
Found at i:14906208 original size:17 final size:18
Alignment explanation
Indices: 14906165--14906211 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
14906155 TGCCAGTGTC
14906165 GGCCCATACGCCTATGTG
1 GGCCCATACGCCTATGTG
*
14906183 GGCCCATACGCCTGTGT-
1 GGCCCATACGCCTATGTG
*
14906200 GGTCCATACGCC
1 GGCCCATACGCC
14906212 CAGATTGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.15, C:0.36, G:0.28, T:0.21
Consensus pattern (18 bp):
GGCCCATACGCCTATGTG
Found at i:14908870 original size:30 final size:30
Alignment explanation
Indices: 14908794--14908879 Score: 79
Period size: 30 Copynumber: 2.9 Consensus size: 30
14908784 TTCAGCTCAC
* *
14908794 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTAAGCTCAACTTTAGCTTAG
* *
14908824 GAG-TATAATCTCAGCTCAACTTTAGCTTAAG
1 GAGCTA-AACCTAAGCTCAACTTTAGCTT-AG
* *
14908855 G-GCTAAAGCTAAGCTC-ATTTTAGCT
1 GAGCTAAACCTAAGCTCAACTTTAGCT
14908880 CAAACCCGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 10 0.21
30 32 0.68
31 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (30 bp):
GAGCTAAACCTAAGCTCAACTTTAGCTTAG
Found at i:14918938 original size:39 final size:39
Alignment explanation
Indices: 14918894--14919169 Score: 435
Period size: 39 Copynumber: 7.1 Consensus size: 39
14918884 ATTATATTAT
* *
14918894 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14918933 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14918972 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14919011 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14919050 CAGCACGAAGCCTGTGGGACTTTAGCCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
14919089 CAGCATGAAGCCTGCGGGAATTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14919128 CAGCACGAAGCCTACGAGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14919167 CAG
1 CAG
14919170 TGTCTTGCAT
Statistics
Matches: 215, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 215 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:14926272 original size:39 final size:39
Alignment explanation
Indices: 14926229--14926543 Score: 513
Period size: 39 Copynumber: 8.1 Consensus size: 39
14926219 ATTATATTAT
* * *
14926229 CAGCACAAAGCCTGCGGGACTTTAACCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14926268 CAGCACGAAGCCTGAGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14926307 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14926346 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14926385 CAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
14926424 CAGCACGAAGCCTGCGAGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14926463 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14926502 CAGCACGAAGCCTGCGGGACTTTAGGCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14926541 CAG
1 CAG
14926544 TGTCTTGCAT
Statistics
Matches: 254, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 254 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:14937732 original size:19 final size:18
Alignment explanation
Indices: 14937705--14937746 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
14937695 AAACTTTAAA
*
14937705 AAAAATCAAAATAATTTTT
1 AAAAATCAAAAT-ATTTAT
*
14937724 AAAATTCAAAATATTTAT
1 AAAAATCAAAATATTTAT
14937742 AAAAA
1 AAAAA
14937747 ATTTAAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATCAAAATATTTAT
Found at i:14937759 original size:12 final size:11
Alignment explanation
Indices: 14937744--14937788 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
14937734 ATATTTATAA
14937744 AAAATTTAAAAG
1 AAAATTT-AAAG
14937756 AAAATTCTAAAG
1 AAAATT-TAAAG
* *
14937768 AATATATAAAG
1 AAAATTTAAAG
14937779 AAAATTTAAA
1 AAAATTTAAA
14937789 ATTTAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
11 13 0.46
12 14 0.50
13 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (11 bp):
AAAATTTAAAG
Found at i:14944562 original size:5 final size:5
Alignment explanation
Indices: 14944552--14944602 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
14944542 CTTAAGACTT
14944552 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
14944602 T
1 T
14944603 GTATATATGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:14947165 original size:32 final size:33
Alignment explanation
Indices: 14947098--14947169 Score: 103
Period size: 32 Copynumber: 2.2 Consensus size: 33
14947088 TGAAAAAGTT
*
14947098 AATATTTTCTGGTGTTTGGATAGATTTGTGTAA
1 AATATTTTCTGGTGTTTGGATAGATTTCTGTAA
*
14947131 AATATTTTCTGTTGTTT-GATAGATTTCT-TAAA
1 AATATTTTCTGGTGTTTGGATAGATTTCTGT-AA
14947163 AATATTT
1 AATATTT
14947170 CATAAAAGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 1 0.03
32 19 0.53
33 16 0.44
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.51
Consensus pattern (33 bp):
AATATTTTCTGGTGTTTGGATAGATTTCTGTAA
Found at i:14947563 original size:15 final size:15
Alignment explanation
Indices: 14947545--14947596 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
14947535 TGCTAAAAAA
14947545 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
14947560 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
14947579 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
14947594 ATT
1 ATT
14947597 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:14947582 original size:19 final size:19
Alignment explanation
Indices: 14947558--14947594 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14947548 TATTATTAAT
*
14947558 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
14947577 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
14947595 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:14950105 original size:33 final size:33
Alignment explanation
Indices: 14950068--14950134 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
14950058 GGACCATGTT
* *
14950068 GAAAAGCTGA-TTGCTAGGGATGATGCAATTGAG
1 GAAAAGCTGAGTGGC-AGGAATGATGCAATTGAG
* *
14950101 GAAAAGCTTAGTGGCAGGAATGATGCCATTGAG
1 GAAAAGCTGAGTGGCAGGAATGATGCAATTGAG
14950134 G
1 G
14950135 CTATGATGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 26 0.90
34 3 0.10
ACGTcount: A:0.33, C:0.10, G:0.34, T:0.22
Consensus pattern (33 bp):
GAAAAGCTGAGTGGCAGGAATGATGCAATTGAG
Found at i:14952446 original size:4 final size:4
Alignment explanation
Indices: 14952437--14952464 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
14952427 AAGTTTTATT
14952437 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14952465 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:14956204 original size:4 final size:4
Alignment explanation
Indices: 14956195--14956222 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
14956185 AAGTTTTATT
14956195 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14956223 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:14959310 original size:35 final size:35
Alignment explanation
Indices: 14959269--14959339 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
14959259 CATCTTCGGA
*
14959269 GCTTGGAAAATATGGAAA-GTAATCTTCAAAGATAT
1 GCTTGGAAAATAT-GAAATGGAATCTTCAAAGATAT
*
14959304 GCTTGGAAAATATGAAATGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGAAATGGAATCTTCAAAGATAT
14959339 G
1 G
14959340 TGATCCTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (35 bp):
GCTTGGAAAATATGAAATGGAATCTTCAAAGATAT
Found at i:14962248 original size:21 final size:20
Alignment explanation
Indices: 14962222--14962261 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
14962212 ATTAAAATTA
14962222 AAATATTATTT-ACTATAAATC
1 AAATATT-TTTGACTA-AAATC
14962243 AAATATTTTTGACTAAAAT
1 AAATATTTTTGACTAAAAT
14962262 TTTTGGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (20 bp):
AAATATTTTTGACTAAAATC
Found at i:14965922 original size:41 final size:40
Alignment explanation
Indices: 14965869--14965973 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
14965859 TGCTGACTCA
*
14965869 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTC-GATTATGACACTGGCCC
* * * * * * * *
14965910 GAAGGCCCTTCGAAACTAGGTTCGGTTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGATTATGACACTGGCCC
14965950 AAAAGCCCTTCGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCG
14965974 GATTTAAACC
Statistics
Matches: 49, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
40 32 0.65
41 17 0.35
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAAGCCCTTCGAGACCAAGCTCGATTATGACACTGGCCC
Found at i:14972902 original size:28 final size:28
Alignment explanation
Indices: 14972869--14972999 Score: 210
Period size: 28 Copynumber: 4.7 Consensus size: 28
14972859 ATTGCATGAC
*
14972869 TATGAATGTGATTGAGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
14972897 TATGAATGTGATTGGGCCTGAAGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
14972925 TATGAATGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
14972953 TATGAATGTGATTGGGTCC-GATGGGCTA
1 TATGAATGTGATTGGG-CCTGATGGGCCA
*
14972981 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
14973000 AAAGGGGCCA
Statistics
Matches: 96, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
27 2 0.02
28 92 0.96
29 2 0.02
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:14977649 original size:26 final size:26
Alignment explanation
Indices: 14977613--14977666 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
14977603 GAGCTAAACC
14977613 TTAGGCAACATAGGTGGGTGGAATTA
1 TTAGGCAACATAGGTGGGTGGAATTA
14977639 TTAGGCAACATAGGTGGGTGGAATTA
1 TTAGGCAACATAGGTGGGTGGAATTA
14977665 TT
1 TT
14977667 GAAGGATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (26 bp):
TTAGGCAACATAGGTGGGTGGAATTA
Found at i:14980823 original size:28 final size:28
Alignment explanation
Indices: 14980792--14980893 Score: 132
Period size: 28 Copynumber: 3.6 Consensus size: 28
14980782 ATTGTATGGC
* * * *
14980792 TATGAATGTGATTGGGCCGGACGAGCCC
1 TATGAATGTGATTGGGCCCGATGGGCCA
* *
14980820 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
*
14980848 TATGAATGTGATTAGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
*
14980876 TATGAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
14980894 TAAAGAGGCC
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCCGATGGGCCA
Found at i:14982198 original size:17 final size:18
Alignment explanation
Indices: 14982147--14982198 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
14982137 CTCAAAGAAG
14982147 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
14982165 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
14982183 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
14982199 CTTCAATGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 6 0.18
18 27 0.82
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:14985008 original size:37 final size:37
Alignment explanation
Indices: 14984958--14985109 Score: 216
Period size: 37 Copynumber: 4.1 Consensus size: 37
14984948 ACCTTTAGCT
* * * *
14984958 CGGACGAAATCTCCAAACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
14984995 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
14985032 CGGGA-AAAATCTCCACACGTAGTCATCGGGTCTTACC
1 C-GGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * * *
14985069 CGAACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
14985106 CGGA
1 CGGA
14985110 ATATATTTCC
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
36 2 0.02
37 99 0.95
38 3 0.03
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:14985324 original size:47 final size:47
Alignment explanation
Indices: 14985272--14985598 Score: 483
Period size: 47 Copynumber: 7.0 Consensus size: 47
14985262 TTTCACACTA
* * * * *
14985272 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
14985319 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
14985366 GCCATTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
14985413 GCCATTCGGCCTCATCACATATATACATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
14985460 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
14985507 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
14985554 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
14985599 AAAATCCTAA
Statistics
Matches: 253, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 253 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:14990133 original size:40 final size:40
Alignment explanation
Indices: 14989702--14990111 Score: 633
Period size: 40 Copynumber: 10.2 Consensus size: 40
14989692 CCAGCATGAT
* * * * * * *
14989702 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** *
14989742 TGCTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
*
14989782 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
14989822 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
14989862 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * *
14989902 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
14989942 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
14989982 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
14990022 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
14990062 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
14990102 TGCTCTTCGG
1 TGCTCTTCGG
14990112 GATTTAGCCC
Statistics
Matches: 342, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 340 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:14991444 original size:37 final size:37
Alignment explanation
Indices: 14991385--14991530 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
14991375 TAGCTCGACG
* *
14991385 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
14991422 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGGCA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
14991459 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
14991496 TACTCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
14991531 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:14991745 original size:47 final size:47
Alignment explanation
Indices: 14991693--14992018 Score: 467
Period size: 47 Copynumber: 7.0 Consensus size: 47
14991683 TTTCACACTA
* * * *
14991693 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
14991740 GCCATTCGGCCTTATCACACATATGCATGCTT-AGATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATG-TTCACATTCATCACATTG
* * *
14991787 GCCATTTGGCCTTATCATATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
14991834 GCCATTCGGCCTCATCACATATATACATGTTCACATTCATCACA-TG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
14991880 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
14991927 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
14991974 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
14992019 AAAATCCTAA
Statistics
Matches: 248, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
46 43 0.17
47 203 0.82
48 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:14991929 original size:140 final size:140
Alignment explanation
Indices: 14991693--14992018 Score: 501
Period size: 140 Copynumber: 2.3 Consensus size: 140
14991683 TTTCACACTA
* * * * *
14991693 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA-TGGCCATTCGGCCTTATCAC
* * * *
14991758 ACATATGCATGCTTAGATTCATCACATTGGCCATTTGGCCTTATCATATATATGCATGCTCACAT
65 ACATATGCATGCTTAGATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
14991823 TCATCACATTG
130 TCATCACATTG
*
14991834 GCCATTCGGCCTCATCACATATATACATGTTCACATTCATCACATGGCCATTCGGCCTTATCACA
1 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATGGCCATTCGGCCTTATCACA
* *
14991899 TATATGCATG-TTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
66 CATATGCATGCTT-AGATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAT
14991963 TCATCACATTG
130 TCATCACATTG
**
14991974 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
14992019 AAAATCCTAA
Statistics
Matches: 169, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
139 2 0.01
140 129 0.76
141 38 0.22
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (140 bp):
GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATGGCCATTCGGCCTTATCACA
CATATGCATGCTTAGATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATT
CATCACATTG
Found at i:14992442 original size:15 final size:15
Alignment explanation
Indices: 14992422--14992456 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
14992412 CTTGTATATC
14992422 TTCCATCCATAAAAT
1 TTCCATCCATAAAAT
14992437 TTCCATCCATAAAAT
1 TTCCATCCATAAAAT
14992452 TTCCA
1 TTCCA
14992457 GAATTTTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (15 bp):
TTCCATCCATAAAAT
Found at i:14995753 original size:40 final size:40
Alignment explanation
Indices: 14995641--14995857 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
14995631 CGGATGATAA
* *
14995641 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
14995681 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
14995720 CCGGGCTAAGTCTCGAAAGCATTTGTGCCAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
14995760 CTGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
14995800 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
14995840 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
14995858 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 51 0.33
40 105 0.67
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:15003901 original size:40 final size:40
Alignment explanation
Indices: 15003702--15003887 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
15003692 TATTCGGATG
* *
15003702 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
15003742 A-ATTCGGGCTAAG-CCCGAAGG-ATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
15003779 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
15003819 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
15003859 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
15003888 AGCAAGTAGC
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
37 15 0.11
38 19 0.14
39 18 0.14
40 81 0.61
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:15013154 original size:40 final size:40
Alignment explanation
Indices: 15013058--15013241 Score: 239
Period size: 40 Copynumber: 4.5 Consensus size: 40
15013048 TATTCGGATG
15013058 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
15013101 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
15013141 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* * *
15013181 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
15013221 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
15013242 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
39 15 0.12
40 79 0.62
41 2 0.02
43 31 0.24
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:15025926 original size:345 final size:345
Alignment explanation
Indices: 15025295--15025928 Score: 1241
Period size: 345 Copynumber: 1.8 Consensus size: 345
15025285 TCAAAGTGAG
15025295 CAAGAAGAACCAATTGAGCCAGAAACTGAGGAGTCAATAAATGAAACTGAAACTGAATCAATTAC
1 CAAGAAGAACCAATTGAGCCAGAAACTGAGGAGTCAATAAATGAAACTGAAACTGAATCAATTAC
*
15025360 AGCCACTGAAGAAGAAGAATCTAATAAGGAACCAAATAGTCCTAAACCAGTTGAAAGATCTGAAA
66 AGCCACTGAAGAAGAAGAATCTAATAAGAAACCAAATAGTCCTAAACCAGTTGAAAGATCTGAAA
15025425 ACCCTGAACCAAGGATTGAGCCAGAAGAAGAACCAGTCAACCTAAGTGTTGAACTTGAATATAAA
131 ACCCTGAACCAAGGATTGAGCCAGAAGAAGAACCAGTCAACCTAAGTGTTGAACTTGAATATAAA
*
15025490 ACTCCCATGCCAACTTCTACAAGTACTTCAAGGAAATTAGAGTTGTCAATTTTGATGGATATGTG
196 ACTCCCATGCCAACTTCTACAAGTACTTCAAGGAAATCAGAGTTGTCAATTTTGATGGATATGTG
15025555 CAAATTCATGCACAATCAACAGCAAACTTACTAGAAATATGCAAAAATTAGAGATGATTCAATTT
261 CAAATTCATGCACAATCAACAGCAAACTTACTAGAAATATGCAAAAATTAGAGATGATTCAATTT
15025620 GAAATACTTTTAAGAATATC
326 GAAATACTTTTAAGAATATC
15025640 CAAGAAGAACCAATTGAGCCAGAAACTGAGGAGTCAATAAATGAAACTGAAACTGAATCAATTAC
1 CAAGAAGAACCAATTGAGCCAGAAACTGAGGAGTCAATAAATGAAACTGAAACTGAATCAATTAC
15025705 AGCCACTGAAGAAGAAGAATCTAATAAGAAACCAAATAGTCCTAAACCAGTTGAAAGATCTGAAA
66 AGCCACTGAAGAAGAAGAATCTAATAAGAAACCAAATAGTCCTAAACCAGTTGAAAGATCTGAAA
*
15025770 ACCCTGAACCAAGGGTTGAGCCAGAAGAAGAACCAGTCAACCTAAGTGTTGAACTTGAATATAAA
131 ACCCTGAACCAAGGATTGAGCCAGAAGAAGAACCAGTCAACCTAAGTGTTGAACTTGAATATAAA
15025835 ACTCCCATGCCAACTTCTACAAGTACTTCAAGGAAATCAGAGTTGTCAATTTTGATGGATATGTG
196 ACTCCCATGCCAACTTCTACAAGTACTTCAAGGAAATCAGAGTTGTCAATTTTGATGGATATGTG
15025900 CAAATTCATGCACAATCAACAGCAAACTT
261 CAAATTCATGCACAATCAACAGCAAACTT
15025929 TTGTTCCTGA
Statistics
Matches: 286, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
345 286 1.00
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (345 bp):
CAAGAAGAACCAATTGAGCCAGAAACTGAGGAGTCAATAAATGAAACTGAAACTGAATCAATTAC
AGCCACTGAAGAAGAAGAATCTAATAAGAAACCAAATAGTCCTAAACCAGTTGAAAGATCTGAAA
ACCCTGAACCAAGGATTGAGCCAGAAGAAGAACCAGTCAACCTAAGTGTTGAACTTGAATATAAA
ACTCCCATGCCAACTTCTACAAGTACTTCAAGGAAATCAGAGTTGTCAATTTTGATGGATATGTG
CAAATTCATGCACAATCAACAGCAAACTTACTAGAAATATGCAAAAATTAGAGATGATTCAATTT
GAAATACTTTTAAGAATATC
Found at i:15037211 original size:28 final size:28
Alignment explanation
Indices: 15037176--15037260 Score: 125
Period size: 28 Copynumber: 3.0 Consensus size: 28
15037166 TGAGAAAGAG
15037176 TATGTTAAGTCACGAGTTGGTACAGGTA
1 TATGTTAAGTCACGAGTTGGTACAGGTA
*
15037204 TATGTTAAGTCACGAGTTGGTAAAGGTA
1 TATGTTAAGTCACGAGTTGGTACAGGTA
* * * *
15037232 TATGTGAAGTCATGAGTTGGAACATGTA
1 TATGTTAAGTCACGAGTTGGTACAGGTA
15037260 T
1 T
15037261 GTACAAAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
TATGTTAAGTCACGAGTTGGTACAGGTA
Found at i:15037787 original size:24 final size:22
Alignment explanation
Indices: 15037747--15037794 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
15037737 ATGCATTTGA
15037747 GATGTGGTTTGTGATTGTGTATAT
1 GATGTGGTTTGTGATTG-GT-TAT
*
15037771 GATG-GGTTATGTTATTGGTTAT
1 GATGTGGTT-TGTGATTGGTTAT
15037793 GA
1 GA
15037795 ATGCTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 11 0.50
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (22 bp):
GATGTGGTTTGTGATTGGTTAT
Found at i:15040390 original size:24 final size:24
Alignment explanation
Indices: 15040349--15040400 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
15040339 CCTTCATACC
* **
15040349 CATATACACATGAACACATCCATA
1 CATATACACATAAACACAAACATA
15040373 CATATACACA-AAATCACAAACATA
1 CATATACACATAAA-CACAAACATA
15040397 CATA
1 CATA
15040401 CTTTCCACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (24 bp):
CATATACACATAAACACAAACATA
Found at i:15042713 original size:39 final size:39
Alignment explanation
Indices: 15042654--15042734 Score: 117
Period size: 39 Copynumber: 2.1 Consensus size: 39
15042644 GATGTAGCTA
15042654 AGTCATCCTAGACACCTTCAAAAACTCTACTAGTTTAAG
1 AGTCATCCTAGACACCTTCAAAAACTCTACTAGTTTAAG
* ** * *
15042693 AGTCGTCCTAGATGCCTTCAAAAACTCTAGTAGTTTAGG
1 AGTCATCCTAGACACCTTCAAAAACTCTACTAGTTTAAG
15042732 AGT
1 AGT
15042735 AGAAATAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (39 bp):
AGTCATCCTAGACACCTTCAAAAACTCTACTAGTTTAAG
Found at i:15045768 original size:48 final size:48
Alignment explanation
Indices: 15045595--15045778 Score: 171
Period size: 50 Copynumber: 3.8 Consensus size: 48
15045585 AGGTAGGATC
*** *
15045595 CGATGCCAT-TCCCCAGACATGGTCTTACATTGGCTCAT-ACTTCAA-GT
1 CGATGCCATGT-CCCAGACATGGTCTTACACCAGCTC-TCACATCAATGT
** *
15045642 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAT-ATCTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCACATCA-ATGT
* *
15045690 GCTGATACCATGTCCCAGACATGGTCTTACACCAGCTCTCGTC-TCAATGT
1 -C-GATGCCATGTCCCAGACATGGTCTTACACCAGCTCTC-ACATCAATGT
* **
15045740 CGATGCCATGTCCCAGACATGTTCTTACACTGGCTCTCA
1 CGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCA
15045779 TATTGTGGCC
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
46 2 0.02
47 36 0.31
48 36 0.31
49 2 0.02
50 38 0.33
51 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCACATCAATGT
Found at i:15045774 original size:98 final size:94
Alignment explanation
Indices: 15045606--15045815 Score: 266
Period size: 98 Copynumber: 2.2 Consensus size: 94
15045596 GATGCCATTC
***
15045606 CCCAGACATGGTCTTACATTGGCTCATACTTCAAGTCGATGCCATGTCCCAGACATGGTCTTACA
1 CCCAGACATGGTCTTACACCAGCTCATACTTCAAGTCGATGCCATGTCCCAGACATGGTCTTACA
*
15045671 CTGGCTCTCACATATCTGT-GCTGATACCATGT
66 CTGGCTCT--CATAT-TGTGGCCGAT-CCATGT
*
15045703 CCCAGACATGGTCTTACACCAGCTC-T-CGTCTCAATGTCGATGCCATGTCCCAGACATGTTCTT
1 CCCAGACATGGTCTTACACCAGCTCATAC-T-TCAA-GTCGATGCCATGTCCCAGACATGGTCTT
*
15045766 ACACTGGCTCTCATATTGTGGCCGATGCATGT
63 ACACTGGCTCTCATATTGTGGCCGATCCATGT
*
15045798 CCTAGACAT-GTCTTACAC
1 CCCAGACATGGTCTTACAC
15045816 TAGCACACAT
Statistics
Matches: 102, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
94 9 0.09
95 17 0.17
96 12 0.12
97 26 0.25
98 38 0.37
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (94 bp):
CCCAGACATGGTCTTACACCAGCTCATACTTCAAGTCGATGCCATGTCCCAGACATGGTCTTACA
CTGGCTCTCATATTGTGGCCGATCCATGT
Found at i:15048488 original size:48 final size:47
Alignment explanation
Indices: 15048258--15048491 Score: 238
Period size: 50 Copynumber: 4.9 Consensus size: 47
15048248 ATGCTAGAGA
* * *
15048258 GATATGAGAGCTAGTGTAAGACGATGTCTGGGACATGGCATCGGCTT
1 GATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTT
* * * **
15048305 GATAT--GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACACC
1 GATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TT
* * * *
15048351 GATAGATGAGAGCTAGTGTAAGACCATGTTTGGTACATGGCATTGACCTT
1 GAT--ATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTT
* *
15048401 GATATACGAGAGTCAGTGTAAGACCATGTCTGGGGCATGGCATCGACTTT
1 GATAT--GAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TT
* * *
15048451 GATGTGTGAGTTAGTGTAAGACCATGTATGGGACATGGCAT
1 GATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCAT
15048492 TGGCACCTTA
Statistics
Matches: 150, Mismatches: 28, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
45 32 0.21
46 3 0.02
47 5 0.03
48 36 0.24
49 1 0.01
50 72 0.48
51 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (47 bp):
GATATGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACTT
Found at i:15048500 original size:100 final size:97
Alignment explanation
Indices: 15048261--15048500 Score: 283
Period size: 100 Copynumber: 2.5 Consensus size: 97
15048251 CTAGAGAGAT
* * * *
15048261 ATGAGAGCTAGTGTAAGACGATGTCTGGGACATGGCATCGG--CTTGATATGTGTCAGTGTAAGA
1 ATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATTGGACCTTGATATGAGTCAGTGTAAGA
15048324 CCATGTCTAGGACATGGCATCGACACCGATAG
66 CCATGTCTAGGACATGGCATCGACACCGATAG
* *
15048356 ATGAGAGCTAGTGTAAGACCATGTTTGGTACATGGCATT-GACCTTGATATACGAGAGTCAGTGT
1 ATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATTGGACCTTGATAT----GAGTCAGTGT
* * ***
15048420 AAGACCATGTCTGGGGCATGGCATCGACTTTGAT-G
62 AAGACCATGTCTAGGACATGGCATCGACACCGATAG
* *
15048455 -TGTGAGTTAGTGTAAGACCATGTATGGGACATGGCATTGGCACCTT
1 ATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATTGG-ACCTT
15048501 ACCTTATGCT
Statistics
Matches: 123, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
94 1 0.01
95 35 0.28
96 8 0.07
98 34 0.28
99 2 0.02
100 43 0.35
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (97 bp):
ATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATTGGACCTTGATATGAGTCAGTGTAAGA
CCATGTCTAGGACATGGCATCGACACCGATAG
Found at i:15050668 original size:17 final size:18
Alignment explanation
Indices: 15050648--15050681 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15050638 CGTTTGTTGA
15050648 TTTTTCTTATTT-ATTTG
1 TTTTTCTTATTTGATTTG
*
15050665 TTTTTGTTATTTGATTT
1 TTTTTCTTATTTGATTT
15050682 ATATTATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.76
Consensus pattern (18 bp):
TTTTTCTTATTTGATTTG
Found at i:15053205 original size:39 final size:40
Alignment explanation
Indices: 15053144--15053288 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 40
15053134 AGTGACTATA
*
15053144 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
15053184 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
15053223 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
15053262 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
15053289 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 35 0.39
40 55 0.61
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:15053301 original size:40 final size:40
Alignment explanation
Indices: 15053185--15053307 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
15053175 GTTACTAATT
* ***
15053185 CCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTA-CTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTATAA
* ** *
15053223 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
* *
15053264 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
15053304 CCGG
1 CCGG
15053308 TTAAATTCCA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
39 10 0.14
40 59 0.83
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
Found at i:15053310 original size:79 final size:78
Alignment explanation
Indices: 15053138--15053311 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 78
15053128 GTGCTAAGTG
* *
15053138 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
***
15053203 CATTGGTGTGAGTT
65 CATTGGAACGAGTT
* * *
15053217 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTGCT-ATAACCGGGCTATGTCCCGA
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGA
*
15053280 AGGCATTTGAACGAG-T
62 AGGCATTGGAACGAGTT
15053296 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
15053312 ATTCCAAAGG
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.04
79 52 0.65
80 25 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGC
ATTGGAACGAGTT
Found at i:15063515 original size:5 final size:5
Alignment explanation
Indices: 15063505--15063540 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
15063495 AATAATTAAG
15063505 TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
15063541 ATAAAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:15065566 original size:40 final size:41
Alignment explanation
Indices: 15065477--15065666 Score: 223
Period size: 40 Copynumber: 4.8 Consensus size: 41
15065467 GTTATTCGAA
* * *
15065477 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTAC
*
15065518 T-ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
1 TAATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
*
15065558 TAAT-TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * *
15065597 TAA-ATCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTGC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
15065637 T-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTG
15065667 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
39 36 0.28
40 82 0.64
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:15065618 original size:79 final size:82
Alignment explanation
Indices: 15065477--15065664 Score: 226
Period size: 79 Copynumber: 2.4 Consensus size: 82
15065467 GTTATTCGAA
* * *
15065477 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAG
*
15065541 GCATTTGTGCGAGTTAC
66 GCATTTGTCCGAGTTAC
* * **
15065558 TAAT-TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 TAATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAA
*
15065619 GGCATTTGTCCGAGTTGC
65 GGCATTTGTCCGAGTTAC
* *
15065637 T-ATAACCGGGCTATGTCCCGAAGGCATT
1 TAATATCCGGGCTAAGTCCCGAAGGCATT
15065665 TGAACGAGTA
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.61
80 29 0.31
81 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAG
GCATTTGTCCGAGTTAC
Found at i:15065688 original size:79 final size:79
Alignment explanation
Indices: 15065483--15065689 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 79
15065473 CGAATAATGT
* *
15065483 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
* *
15065546 TGTGCGAGTTACTAATT
63 TGTCCGAGTTACTAATA
* *
15065563 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
*
15065625 TGTCCGAGTTGCT-ATAA
63 TGTCCGAGTTACTAAT-A
* **
15065642 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
15065690 ATTCCAAAGG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 61 0.57
80 43 0.40
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
CCGAGTTACTAATA
Found at i:15067331 original size:56 final size:56
Alignment explanation
Indices: 15067237--15067370 Score: 187
Period size: 56 Copynumber: 2.4 Consensus size: 56
15067227 CATGGCATCG
* * ** * *
15067237 ATATATTTGTGTGAGTAAGACCACGTTTAATATTTTGGCATCTATACGTGACTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGACTCCA
* * *
15067293 GTATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGACTCCA
15067349 ATATATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
15067371 CTGTATGGAA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGACTCCA
Found at i:15069776 original size:26 final size:26
Alignment explanation
Indices: 15069747--15069801 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
15069737 AACACACCAA
*
15069747 TATCCCAGCAAGGCTGCCAGAAACAG
1 TATCCCAGCAAAGCTGCCAGAAACAG
** * *
15069773 TATCGTAGCAAAGCTGCCAGTATCAG
1 TATCCCAGCAAAGCTGCCAGAAACAG
15069799 TAT
1 TAT
15069802 TTGTGGCAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (26 bp):
TATCCCAGCAAAGCTGCCAGAAACAG
Found at i:15069823 original size:24 final size:24
Alignment explanation
Indices: 15069796--15069842 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
15069786 CTGCCAGTAT
*
15069796 CAGTATTTGTGGCAAAGCCACCAG
1 CAGTATATGTGGCAAAGCCACCAG
15069820 CAGTATATGTGGCAAAGCCACCA
1 CAGTATATGTGGCAAAGCCACCA
15069843 ATATAATACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (24 bp):
CAGTATATGTGGCAAAGCCACCAG
Found at i:15070953 original size:51 final size:51
Alignment explanation
Indices: 15070877--15070978 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
15070867 ATAGCAATGT
15070877 ATGGAAGCAATCGATCAAGAATAGGGAGAGAAAAGAAGGCCGAGTACCATC
1 ATGGAAGCAATCGATCAAGAATAGGGAGAGAAAAGAAGGCCGAGTACCATC
15070928 ATGGAAGCAATCGATCAAGAATAGGGAGAGAAAAGAAGGCCGAGTACCATC
1 ATGGAAGCAATCGATCAAGAATAGGGAGAGAAAAGAAGGCCGAGTACCATC
15070979 GGTATTCCAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.43, C:0.16, G:0.29, T:0.12
Consensus pattern (51 bp):
ATGGAAGCAATCGATCAAGAATAGGGAGAGAAAAGAAGGCCGAGTACCATC
Found at i:15083808 original size:18 final size:19
Alignment explanation
Indices: 15083785--15083825 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
15083775 TTGCAGTAAG
*
15083785 AAAAGATGAAA-GTTTTCA
1 AAAAGATAAAATGTTTTCA
*
15083803 AAAAGATAAAATTTTTTCA
1 AAAAGATAAAATGTTTTCA
15083822 AAAA
1 AAAA
15083826 TACCACGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.29
Consensus pattern (19 bp):
AAAAGATAAAATGTTTTCA
Found at i:15092458 original size:46 final size:45
Alignment explanation
Indices: 15092379--15092548 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 45
15092369 AACCCGCCCC
* ** *
15092379 TAAGTGAACTCGGGCTCAACTCAATAAGCTCGGACGTTCCCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TTCCCATCCA
* * *
15092425 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-TGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTCCCA--TCCA
* ** *
15092471 TTTCA-CAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAC-TTCCCATCCA
*
15092518 TAAGTGAACTCGAACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
15092549 AGATGCTCAA
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
44 4 0.04
45 2 0.02
46 57 0.58
47 31 0.31
48 2 0.02
49 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTCCCATCCA
Found at i:15092493 original size:93 final size:93
Alignment explanation
Indices: 15092385--15092554 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
15092375 CCCCTAAGTG
* * * *
15092385 AACTCGGGCTCAACTCAATAAGCTCGGACGTTCCCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCGGACATTCCCATCCATAAGTGAACTCGAACTCAACTCAAC
*
15092450 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCAGATGCCTAGTTACATTTCACA
* * *
15092478 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCGGACATTCCCATCCATAAGTGAACTCGAACTCAACTCAAC
15092543 GAGTTCAGATGC
66 GAGTTCAGATGC
15092555 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACAAGCTCGGACATTCCCATCCATAAGTGAACTCGAACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATTTCACA
Found at i:15094973 original size:15 final size:15
Alignment explanation
Indices: 15094947--15095002 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
15094937 CAAGGAAACC
15094947 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
15094962 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
15094977 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
15094992 GAATAAAGAAA
1 GAATAAAGAAA
15095003 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:15098073 original size:93 final size:93
Alignment explanation
Indices: 15097966--15098136 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
15097956 GCCCCTAAGT
* *
15097966 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
15098031 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
15098059 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
15098124 CGAGTTCGGATGC
66 CGAGTTCGGATGC
15098137 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:15098133 original size:46 final size:46
Alignment explanation
Indices: 15097961--15098133 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
15097951 AACCCGCCCC
* * *
15097961 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
15098007 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
15098055 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
15098100 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
15098134 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:15101475 original size:27 final size:27
Alignment explanation
Indices: 15101435--15101546 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
15101425 AGGAAGCGTC
*
15101435 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
15101462 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
15101489 CTGGTGGCTCTGTCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
15101517 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
15101543 CTGG
1 CTGG
15101547 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.63
28 19 0.26
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:15101541 original size:54 final size:54
Alignment explanation
Indices: 15101435--15101546 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
15101425 AGGAAGCGTC
* *
15101435 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
15101489 CTGGTGGCTCTGTCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
15101543 CTGG
1 CTGG
15101547 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:15109675 original size:30 final size:30
Alignment explanation
Indices: 15109641--15109701 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
15109631 TCCTTAAATC
15109641 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
15109671 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
15109701 A
1 A
15109702 GGCTCTGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:15110882 original size:22 final size:22
Alignment explanation
Indices: 15110843--15110885 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15110833 ATCACTCTTC
* *
15110843 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
15110865 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
15110886 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:15112169 original size:27 final size:27
Alignment explanation
Indices: 15112129--15112240 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
15112119 AGAAAGCGTC
*
15112129 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
15112156 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
15112183 CTAGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
15112211 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
15112237 CTGG
1 CTGG
15112241 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 17 0.24
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:15112235 original size:54 final size:54
Alignment explanation
Indices: 15112132--15112238 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
15112122 AAGCGTCCTG
* *
15112132 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTA
* * * *
15112186 GTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTTCT
15112239 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTA
Found at i:15118013 original size:21 final size:22
Alignment explanation
Indices: 15117967--15118011 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
15117957 TTGATCACTC
* *
15117967 TTCTCTCCTTTTATTTTTCTTT
1 TTCTCTCCATTTATTATTCTTT
*
15117989 TTCTCTCCATTTGTTATTCTTT
1 TTCTCTCCATTTATTATTCTTT
15118011 T
1 T
15118012 CTTCTTCTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.07, C:0.22, G:0.02, T:0.69
Consensus pattern (22 bp):
TTCTCTCCATTTATTATTCTTT
Found at i:15119337 original size:27 final size:26
Alignment explanation
Indices: 15119256--15119365 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
15119246 TGGAGGAAGC
* *
15119256 GTCCTGGTGGCTATGCCACAATTATTT
1 GTCCTGGTGGCTCTGCCAC-ATTATCT
* *
15119283 AAT-CTGGTGGCTCTGCCACATATTTCT
1 -GTCCTGGTGGCTCTGCCACAT-TATCT
15119310 GTCCTGGTGGCTCTGCCACGATTATCT
1 GTCCTGGTGGCTCTGCCAC-ATTATCT
* * *
15119337 GTATCTGGTGACTCTGTCACATTATCT
1 GT-CCTGGTGGCTCTGCCACATTATCT
15119364 GT
1 GT
15119366 TTTGGCAGCC
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
26 3 0.04
27 49 0.71
28 17 0.25
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCCTGGTGGCTCTGCCACATTATCT
Found at i:15119365 original size:54 final size:54
Alignment explanation
Indices: 15119256--15119365 Score: 143
Period size: 54 Copynumber: 2.0 Consensus size: 54
15119246 TGGAGGAAGC
* *
15119256 GTCCTGGTGGCTATGCCACAATTATTTAATCTGGTGGCTCTGCCACATATTTCT
1 GTCCTGGTGGCTATGCCACAATTATTTAATCTGGTGACTCTGCCACATATATCT
* * *
15119310 GTCCTGGTGGCTCTGCCACGATTATCTGT-ATCTGGTGACTCTGTCACAT-TATCT
1 GTCCTGGTGGCTATGCCACAATTAT-T-TAATCTGGTGACTCTGCCACATATATCT
15119364 GT
1 GT
15119366 TTTGGCAGCC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 29 0.59
55 19 0.39
56 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATTTAATCTGGTGACTCTGCCACATATATCT
Found at i:15121385 original size:20 final size:20
Alignment explanation
Indices: 15121360--15121405 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
15121350 GTCTTGACAT
15121360 GCATAATCAAGCAAGTTCTA
1 GCATAATCAAGCAAGTTCTA
15121380 GCATAATCAAGCAAGTTCTA
1 GCATAATCAAGCAAGTTCTA
*
15121400 GAATAA
1 GCATAA
15121406 CAAATCAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.24
Consensus pattern (20 bp):
GCATAATCAAGCAAGTTCTA
Found at i:15126750 original size:18 final size:18
Alignment explanation
Indices: 15126727--15126765 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
15126717 CATAGTAGCC
15126727 TGCACTTAGTACTACACA
1 TGCACTTAGTACTACACA
*
15126745 TGCACTTAGTACTGCACA
1 TGCACTTAGTACTACACA
15126763 TGC
1 TGC
15126766 GACCAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (18 bp):
TGCACTTAGTACTACACA
Found at i:15126841 original size:118 final size:118
Alignment explanation
Indices: 15126629--15126865 Score: 375
Period size: 118 Copynumber: 2.0 Consensus size: 118
15126619 TAGTAGCCTA
** * *
15126629 CACTTAGTACTACACATGCAACCAATAATTTGGTACACGTAGTAGCCTGGACTTAGTACTACACT
1 CACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
*
15126694 CGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
66 CGTGATCACAATTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
* * *
15126747 CACTTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 CACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
** *
15126812 CGTGATCACAATTTTCGGGTACGTGTAGTAGCTTGCACTTAGTACTACACATG
66 CGTGATCACAATTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
15126865 C
1 C
15126866 GACCAATTAT
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 108 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (118 bp):
CACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
CGTGATCACAATTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
Found at i:15126892 original size:49 final size:49
Alignment explanation
Indices: 15126745--15126911 Score: 244
Period size: 49 Copynumber: 3.4 Consensus size: 49
15126735 GTACTACACA
*
15126745 TGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
* * * * ** *
15126794 TGCACTTAGTACTACACACGTGATCACAATTTTCGGGTACGTGTAGTAGCT
1 TGCACTTAGTACTACACATGCGA-C-CAATTATCCGGTACACGTAGTAGCC
15126845 TGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
15126894 TGCACTTAGTACTACACA
1 TGCACTTAGTACTACACA
15126912 CGTGACCTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 58 0.57
50 2 0.02
51 41 0.41
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
Found at i:15129439 original size:15 final size:15
Alignment explanation
Indices: 15129390--15129445 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 15
15129380 CAAGAAAATC
15129390 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
15129405 -AGATAGAA-AAA-CCTA
1 GA-ATA-AAGAAATCC-A
15129420 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
15129435 GAATAAAGAAA
1 GAATAAAGAAA
15129446 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
14 5 0.14
15 25 0.71
16 5 0.14
ACGTcount: A:0.62, C:0.11, G:0.14, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:15132569 original size:100 final size:100
Alignment explanation
Indices: 15132452--15132838 Score: 704
Period size: 100 Copynumber: 3.9 Consensus size: 100
15132442 AAAGTTATCT
* **
15132452 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
15132517 TGCACTTAGTACTACACACGTGATCACAGTTTTTG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* *
15132552 GGTACGCATTGTAGCCTGCACTTAGTACTACATATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
15132617 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
15132652 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
15132716 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
15132751 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
*
15132816 TGCACTTAGTACTACACATGTGA
66 TGCACTTAGTACTACACACGTGA
15132839 CCTCACAATA
Statistics
Matches: 277, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
99 99 0.36
100 178 0.64
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:15132577 original size:51 final size:49
Alignment explanation
Indices: 15132452--15132840 Score: 442
Period size: 49 Copynumber: 7.8 Consensus size: 49
15132442 AAAGTTATCT
*
15132452 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTT--
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT--TTTCC
* * * * **
15132501 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTTTCC
* * * *
15132552 GGTACGCATTGTAGCCTGCACTTAGTACTACATATGCGACCAATTATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTTTCC
* * * * *
15132601 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTTTCC
* *
15132652 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTTTCC
* * * * *
15132700 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTTTCC
* *
15132751 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTTTCC
* *
15132800 GGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
15132841 TCACAATAGT
Statistics
Matches: 283, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
48 38 0.13
49 123 0.43
50 7 0.02
51 115 0.41
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTTTCC
Found at i:15132793 original size:199 final size:200
Alignment explanation
Indices: 15132452--15132838 Score: 713
Period size: 199 Copynumber: 1.9 Consensus size: 200
15132442 AAAGTTATCT
**
15132452 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
* *
15132517 TGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCATTGTAGCCTGCACTTAGTACTA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTA
*
15132582 CATATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
131 CACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
15132647 TTTCG
196 TTTCG
15132652 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT-ATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
15132716 TGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTA
*
15132781 CACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA
131 CACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
15132839 CCTCACAATA
Statistics
Matches: 181, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
199 137 0.76
200 44 0.24
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (200 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTA
CACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
TTTCG
Found at i:15135839 original size:26 final size:26
Alignment explanation
Indices: 15135804--15135855 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15135794 AATGTGAAAG
*
15135804 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15135830 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15135856 TTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:15135942 original size:26 final size:26
Alignment explanation
Indices: 15135907--15135958 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15135897 AAATGAAAAG
*
15135907 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15135933 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15135959 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:15135943 original size:103 final size:103
Alignment explanation
Indices: 15135727--15135990 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 103
15135717 TGTATATAAA
** *
15135727 AGGGGTTGCTGTGTGCTGATTCCCCG-TTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
15135790 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
15135829 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
15135894 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
15135932 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
15135991 ATAACGGTTA
Statistics
Matches: 151, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
102 53 0.35
103 56 0.37
104 41 0.27
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:15143313 original size:26 final size:26
Alignment explanation
Indices: 15143278--15143329 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15143268 AATGTGAAAG
*
15143278 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15143304 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
15143330 TTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:15143404 original size:102 final size:102
Alignment explanation
Indices: 15143201--15143463 Score: 415
Period size: 102 Copynumber: 2.6 Consensus size: 102
15143191 TGTATATAAA
* *
15143201 AGGGGTTGCT-TGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
15143264 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAA-GTGAAAAGGGGTTGCTATGTGCTGATTCCCCG
*
15143303 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
15143368 TTGAAA-TGAAAAGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCG
* * *
15143405 AGGGGTTGCTAAGTGCTGATTCCCCAATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
15143464 ATAACGGTTA
Statistics
Matches: 150, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
101 29 0.19
102 66 0.44
103 15 0.10
104 39 0.26
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCG
Found at i:15143415 original size:26 final size:26
Alignment explanation
Indices: 15143379--15143429 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15143369 TGAAATGAAA
*
15143379 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
15143405 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
15143430 AATTCAGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:15146033 original size:13 final size:13
Alignment explanation
Indices: 15146015--15146041 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15146005 GCTCGACAGG
15146015 GACACGCCCGTGT
1 GACACGCCCGTGT
15146028 GACACGCCCGTGT
1 GACACGCCCGTGT
15146041 G
1 G
15146042 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:15150528 original size:28 final size:28
Alignment explanation
Indices: 15150496--15150623 Score: 166
Period size: 29 Copynumber: 4.5 Consensus size: 28
15150486 ATAGTAAGTC
*
15150496 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
15150524 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
*
15150553 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
15150581 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
15150610 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15150624 CAATCTCATG
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 43 0.49
29 44 0.51
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:15150616 original size:57 final size:57
Alignment explanation
Indices: 15150495--15150623 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
15150485 TATAGTAAGT
*
15150495 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
* * * * * *
15150552 TCACACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
15150609 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
15150624 CAATCTCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
Found at i:15158638 original size:56 final size:55
Alignment explanation
Indices: 15158570--15158681 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 55
15158560 GACCATGGCA
* * *
15158570 TCGGTATATGTGTGTGAGTAAGACCACATTTAATACATTGGCATTGATATGTGAT
1 TCGGTATATGTGTGCGAGTAACACCACATTTAATACATTGGCATCGATATGTGAT
* *
15158625 TCGGATATATGTGTGCGAGTAACACCACGTTTAATACGTTGGCATCGATATGTGAT
1 TCGG-TATATGTGTGCGAGTAACACCACATTTAATACATTGGCATCGATATGTGAT
15158681 T
1 T
15158682 ACATGTAAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
55 4 0.08
56 47 0.92
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (55 bp):
TCGGTATATGTGTGCGAGTAACACCACATTTAATACATTGGCATCGATATGTGAT
Found at i:15159956 original size:12 final size:12
Alignment explanation
Indices: 15159935--15159963 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15159925 TAATGGTGAT
15159935 AAAG-ATATGTC
1 AAAGTATATGTC
15159946 AAAGTATATGTC
1 AAAGTATATGTC
15159958 AAAGTA
1 AAAGTA
15159964 CAATGTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (12 bp):
AAAGTATATGTC
Found at i:15160968 original size:40 final size:40
Alignment explanation
Indices: 15160820--15160979 Score: 169
Period size: 41 Copynumber: 3.9 Consensus size: 40
15160810 ATTACTGAAT
* *
15160820 ATCTCGCACATTAAGTGCCA-AAGCATAGCCGAAACTATTATA
1 ATCTCGC-CACTAAGTG-CATAA-CATAGCCGAAGCTATTATA
* * * *
15160862 ATATCACCCACTAAGTGCAAAACATAGCGGAAGCTATTATA
1 ATCTC-GCCACTAAGTGCATAACATAGCCGAAGCTATTATA
*
15160903 ATCTTGCACACTAAGTGCATAACATAGCCGAAGCTATTATA
1 ATCTCGC-CACTAAGTGCATAACATAGCCGAAGCTATTATA
* * * *
15160944 ACCTCGCCACTAAGTGCATTACATAGCTGGAGCTAT
1 ATCTCGCCACTAAGTGCATAACATAGCCGAAGCTAT
15160980 CTTGATCTGG
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 27 0.27
41 58 0.58
42 14 0.14
43 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (40 bp):
ATCTCGCCACTAAGTGCATAACATAGCCGAAGCTATTATA
Found at i:15160970 original size:81 final size:83
Alignment explanation
Indices: 15160820--15160997 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 83
15160810 ATTACTGAAT
* *
15160820 ATCTCGCACATTAAGTGCCAAAGCATAGCCGAAACTATTATAATATCACCCACTAAGTGCAAAAC
1 ATCTCGCACACTAAGTGCCAAAGCATAGCCGAAACTATTATAACATCACCCACTAAGTGCAAAAC
15160885 ATAGC-GGAAGCTAT-TATA
66 ATAGCTGG-AGCTATCT-TA
* * * * **
15160903 ATCTTGCACACTAAGTG-CATAA-CATAGCCGAAGCTATTATAACCTC-GCCACTAAGTGCATTA
1 ATCTCGCACACTAAGTGCCA-AAGCATAGCCGAAACTATTATAACATCACCCACTAAGTGCAAAA
*
15160965 CATAGCTGGAGCTATCTTG
65 CATAGCTGGAGCTATCTTA
*
15160984 ATCTGGCACACTAA
1 ATCTCGCACACTAA
15160998 ATGCTAAACG
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
81 39 0.48
82 26 0.32
83 17 0.21
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (83 bp):
ATCTCGCACACTAAGTGCCAAAGCATAGCCGAAACTATTATAACATCACCCACTAAGTGCAAAAC
ATAGCTGGAGCTATCTTA
Found at i:15163715 original size:18 final size:17
Alignment explanation
Indices: 15163687--15163720 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15163677 GGCCTTAGCC
15163687 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
15163704 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
15163721 TCAAAATTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:15163720 original size:6 final size:6
Alignment explanation
Indices: 15163708--15163807 Score: 96
Period size: 6 Copynumber: 16.3 Consensus size: 6
15163698 AAGAAACATT
* * *
15163708 ATCAGA ATTAGA ATCAAA ATTAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
15163756 ATTAGGTA AT-AGA ATCAGA ATCGGT ATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
15163806 AT
1 AT
15163808 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
5 5 0.06
6 63 0.82
7 5 0.06
8 4 0.05
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:15163771 original size:25 final size:25
Alignment explanation
Indices: 15163716--15163807 Score: 107
Period size: 25 Copynumber: 3.7 Consensus size: 25
15163706 TTATCAGAAT
* *
15163716 TAGAATCAAAATTAGAATCA-G-AA
1 TAGAATCAGAATCAGAATCAGGTAA
*
15163739 TCAGAATCAGAATCAGAATTAGGTAA
1 T-AGAATCAGAATCAGAATCAGGTAA
* *
15163765 TAGAATCAGAATCGGTATCAGGTAA
1 TAGAATCAGAATCAGAATCAGGTAA
*
15163790 CAGAATCAGAATCAGAAT
1 TAGAATCAGAATCAGAAT
15163808 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
23 1 0.02
24 16 0.28
25 37 0.65
26 3 0.05
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (25 bp):
TAGAATCAGAATCAGAATCAGGTAA
Found at i:15164343 original size:27 final size:27
Alignment explanation
Indices: 15164313--15164777 Score: 477
Period size: 27 Copynumber: 17.2 Consensus size: 27
15164303 AACACCCTAG
** * * *
15164313 GGGTAAAATGGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* **
15164340 GGGTAAAACGGTAATTCTGTAAATTAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
15164367 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
15164394 GAGT-AAACTAGTAATT-TTTAAAATCGA
1 GGGTAAAAC-AGTAATTCTGT-AAATCGA
* *
15164421 GGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
15164448 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
15164475 GGGTAAAACAGTAATTTTGTAAATCTA
1 GGGTAAAACAGTAATTCTGTAAATCGA
** *
15164502 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
15164529 GGGTAAAACAATAATTCTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
15164556 GGGTAAAACGGCAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
15164583 TGGTAAAACGGTAATTTTAG-AAATCGA
1 GGGTAAAACAGTAATTCT-GTAAATCGA
* *
15164610 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
15164637 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
15164664 GGGTAAAATAATAATTCTGTATATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
15164691 GGGTAAAACGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
15164718 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
15164745 GGGTAAAACAATAATTTTTGTAATTCGA
1 GGGTAAAACAGTAA-TTCTGTAAATCGA
15164773 GGGTA
1 GGGTA
15164778 CTTTGATAAT
Statistics
Matches: 364, Mismatches: 67, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.02
27 337 0.93
28 21 0.06
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:15164790 original size:27 final size:26
Alignment explanation
Indices: 15164755--15164923 Score: 108
Period size: 27 Copynumber: 6.3 Consensus size: 26
15164745 GGGTAAAACA
* *
15164755 ATAATTTTTGTAATTCGAGGGTACTTTG
1 ATAA-TTTTATAAATCGAGGGTA-TTTG
* ** *
15164783 ATAATTTTACATGTCGAGGGTATTTC
1 ATAATTTTATAAATCGAGGGTATTTG
*
15164809 AGTAATTTTGTAAA-CTGAGGGTATTTCG
1 A-TAATTTTATAAATC-GAGGGTATTT-G
* *
15164837 ATAATTTTACAAATCGAGGATATTTGG
1 ATAATTTTATAAATCGAGGGTATTT-G
* * *
15164864 GTAATTTTATAAACCGGGGGTACTTTG
1 ATAATTTTATAAATCGAGGGTA-TTTG
* * * *
15164891 GTAATTTTACAACT-GAGGGTATTTC
1 ATAATTTTATAAATCGAGGGTATTTG
15164916 AGTAATTT
1 A-TAATTT
15164924 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
25 3 0.03
26 17 0.15
27 81 0.74
28 9 0.08
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
ATAATTTTATAAATCGAGGGTATTTG
Found at i:15164840 original size:54 final size:54
Alignment explanation
Indices: 15164771--15164931 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 54
15164761 TTTGTAATTC
**
15164771 GAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCAGTAATTTTGTAAACT
1 GAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACT
* ** * *
15164825 GAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACC
1 GAGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACT
* * * *
15164879 GGGGGTACTTTGGTAATTTTACAACT-GAGGGTATTTCAGTAATTTGGTAAACT
1 GAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACT
15164932 AAAGTATTCT
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
53 24 0.27
54 62 0.70
55 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
GAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACT
Found at i:15166891 original size:6 final size:6
Alignment explanation
Indices: 15166861--15166954 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
15166851 AAGAAACATT
* *
15166861 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
15166910 ATCAGA ATCAGT ATCAAGTA A-CAGA ATCTGA ATCTGA ATCTGA AT
1 ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA ATCAGA AT
15166955 GCAAACCCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
5 5 0.07
6 58 0.79
7 7 0.10
8 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:15166915 original size:25 final size:25
Alignment explanation
Indices: 15166882--15166949 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
15166872 AATCAAAATG
*
15166882 AGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAAGTAAC
*
15166907 AGAATCAGAATCAGTATCAAGTAAC
1 AGAATCAGAATCAGAATCAAGTAAC
* *
15166932 AGAATCTGAATCTGAATC
1 AGAATCAGAATCAGAATC
15166950 TGAATGCAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAAGTAAC
Found at i:15167115 original size:27 final size:26
Alignment explanation
Indices: 15167067--15167126 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
15167057 GCGAGGCTGC
* *
15167067 CAGATATTGTGGCGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCA-AAA
* *
15167094 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGGCGAAGCCACCAAAA
15167120 CAGATAT
1 CAGATAT
15167127 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGGCGAAGCCACCAAAA
Found at i:15167505 original size:27 final size:27
Alignment explanation
Indices: 15167471--15167936 Score: 569
Period size: 27 Copynumber: 17.2 Consensus size: 27
15167461 TAACACATTA
** * *
15167471 AGGGTAAAATGGTAATTTTATATATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
15167498 AGGTTAAAACAGTAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
15167525 AGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
15167552 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
15167579 AGGGTAAAATAGTAATTTTGTCAATAG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
15167606 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
15167633 TGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
** *
15167660 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
15167687 AGGGTAAAA-TGATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTTTGTAAATCG
*
15167714 AGGGTAAAAC-GTTAATTTTATAAATCG
1 AGGGTAAAACAG-TAATTTTGTAAATCG
* *
15167741 AGGGTAAAACAGTAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
15167768 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
15167795 AGGGTAAAACAATAATTCTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
15167822 AGGGTAAAAC-GATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTTTGTAAATCG
** * *
15167849 AGGGTAAAATGGTAATTTTATAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
15167876 AGGGTAAAACAATAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
15167903 AGGGTAAAACAATAATTTTTGTAATTCG
1 AGGGTAAAACAGTAA-TTTTGTAAATCG
15167931 AGGGTA
1 AGGGTA
15167937 CTTTGATAAT
Statistics
Matches: 378, Mismatches: 55, Indels: 11
0.85 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 359 0.95
28 18 0.05
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCG
Found at i:15168003 original size:54 final size:53
Alignment explanation
Indices: 15167931--15168082 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 53
15167921 TTGTAATTCG
* **
15167931 AGGGTACTTTGATAATTTTACATGTCGAGGATATTTTAGTAATTTTACAAACTA
1 AGGGTACTTTGGTAATTTTACAAAT-GAGGATATTTTAGTAATTTTACAAACTA
** * *
15167985 AGGGTA-TTTCGGTAATTTTACAAATTGAGGATATTTGGGTAATTTTATAAACTG
1 AGGGTACTTT-GGTAATTTTACAAA-TGAGGATATTTTAGTAATTTTACAAACTA
* * * *
15168039 GGGGTACTTTGGTAATTTTACAACTGGGGGTATTTTAGTAATTT
1 AGGGTACTTTGGTAATTTTACAAATGAGGATATTTTAGTAATTT
15168083 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
53 19 0.23
54 59 0.72
55 4 0.05
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (53 bp):
AGGGTACTTTGGTAATTTTACAAATGAGGATATTTTAGTAATTTTACAAACTA
Found at i:15168052 original size:27 final size:27
Alignment explanation
Indices: 15167969--15168082 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
15167959 GGATATTTTA
*
15167969 GTAATTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTGAGGGTATTTCG
* * *
15167996 GTAATTTTACAAATTGAGGATATTTGG
1 GTAATTTTACAAACTGAGGGTATTTCG
* *
15168023 GTAATTTTATAAACTGGGGGTACTTT-G
1 GTAATTTTACAAACTGAGGGTA-TTTCG
* **
15168050 GTAATTTTAC-AACTGGGGGTATTTTA
1 GTAATTTTACAAACTGAGGGTATTTCG
15168076 GTAATTT
1 GTAATTT
15168083 GGTAAACTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
25 3 0.04
26 18 0.24
27 51 0.68
28 3 0.04
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAACTGAGGGTATTTCG
Found at i:15168070 original size:26 final size:25
Alignment explanation
Indices: 15167930--15168082 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 25
15167920 TTTGTAATTC
* **
15167930 GAGGGTACTTTGATAATTTTACATGT
1 GAGGGTA-TTTGGTAATTTTACAACT
* *
15167956 CGAGGATATTTTAGTAATTTTACAAACT
1 -GAGGGTA-TTTGGTAATTTTAC-AACT
* *
15167984 AAGGGTATTTCGGTAATTTTACAAATT
1 GAGGGTATTT-GGTAATTTTAC-AACT
* *
15168011 GAGGATATTTGGGTAATTTTATAAACT
1 GAGGGTATTT-GGTAATTTTA-CAACT
*
15168038 GGGGGTACTTTGGTAATTTTACAACT
1 GAGGGTA-TTTGGTAATTTTACAACT
* *
15168064 GGGGGTATTTTAGTAATTT
1 GAGGGTA-TTTGGTAATTT
15168083 GGTAAACTAA
Statistics
Matches: 102, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
26 24 0.24
27 73 0.72
28 5 0.05
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (25 bp):
GAGGGTATTTGGTAATTTTACAACT
Found at i:15168090 original size:27 final size:25
Alignment explanation
Indices: 15168023--15168082 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
15168013 GGATATTTGG
*
15168023 GTAATTTTATAAACTGGGGGTACTTTG
1 GTAA-TTT-TAAACTGGGGGTACTTTA
*
15168050 GTAATTTTACAACTGGGGGTATTTTA
1 GTAATTTTA-AACTGGGGGTACTTTA
15168076 GTAATTT
1 GTAATTT
15168083 GGTAAACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 2 0.07
26 24 0.80
27 4 0.13
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (25 bp):
GTAATTTTAAACTGGGGGTACTTTA
Found at i:15188602 original size:41 final size:41
Alignment explanation
Indices: 15188530--15188708 Score: 209
Period size: 41 Copynumber: 4.3 Consensus size: 41
15188520 AATATCTTGG
* * *
15188530 ACACTAAGTGCCAAAGCATAGCTGAAACTATTATAATCTCGC
1 ACACTAAGTG-CAAAACATAGCCGAAGCTATTATAATCTCGC
*
15188572 ACACTAAGTGCAAAACATAGCCGAAGCTATTATAATCTCAC
1 ACACTAAGTGCAAAACATAGCCGAAGCTATTATAATCTCGC
* *
15188613 ACACTAAGTGCATAATATAGCCGAAGCTATTATAA-CGTCGC
1 ACACTAAGTGCAAAACATAGCCGAAGCTATTATAATC-TCGC
** * ** *
15188654 ACACTAAGTGCATTACATAGCCGGAGCTATCT-CGATCTTGC
1 ACACTAAGTGCAAAACATAGCCGAAGCTAT-TATAATCTCGC
15188695 ACACTAAGTGCAAA
1 ACACTAAGTGCAAA
15188709 CTTAATCTAT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.01
41 106 0.89
42 12 0.10
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (41 bp):
ACACTAAGTGCAAAACATAGCCGAAGCTATTATAATCTCGC
Found at i:15189154 original size:29 final size:28
Alignment explanation
Indices: 15189115--15189180 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
15189105 TTTTCATTTA
* *
15189115 TTTCACAATTTAACCCCTCAATTTACATT
1 TTTCTCAATTTAACCCCT-AATATACATT
* *
15189144 TTTCTCAATTTAATCCCTAATATGCATT
1 TTTCTCAATTTAACCCCTAATATACATT
15189172 TTTACTCAA
1 TTT-CTCAA
15189181 AATCACTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.30, C:0.24, G:0.02, T:0.44
Consensus pattern (28 bp):
TTTCTCAATTTAACCCCTAATATACATT
Found at i:15192046 original size:43 final size:42
Alignment explanation
Indices: 15191997--15192151 Score: 172
Period size: 43 Copynumber: 3.6 Consensus size: 42
15191987 TCGGCATTTC
*
15191997 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCAGCATTATA
1 GCCTGCTAGGCCTGAAGCCCGATAT-ATTTCACCAGCATTATA
** * *
15192040 GCCTGCTAGGCCAAAAGCCCGATATTATCTCACCGGCATTATA
1 GCCTGCTAGGCCTGAAGCCCGATA-TATTTCACCAGCATTATA
*
15192083 GCCTGCTAGGCCTGAAGCCCGATAATATTATTCACCAGC-TTAAA
1 GCCTGCTAGGCCTGAAGCCCGAT-ATA-T-TTCACCAGCATTATA
* *
15192127 GCTTGCTAGGCC-GAGGCCCGA-ATAT
1 GCCTGCTAGGCCTGAAGCCCGATATAT
15192152 CACATTTCGA
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
43 67 0.70
44 18 0.19
45 7 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (42 bp):
GCCTGCTAGGCCTGAAGCCCGATATATTTCACCAGCATTATA
Done.