Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 56 of 253
Found at i:15585455 original size:38 final size:39
Alignment explanation
Indices: 15585413--15585517 Score: 97
Period size: 41 Copynumber: 2.7 Consensus size: 39
15585403 TAGTTCGAAA
* *
15585413 TAAAGTTGACACCCAGTGTCTCATTG-GCCTAGCCAAAG
1 TAAAGTTGACACCCAGTGTCTCATCGAACCTAGCCAAAG
** * * * *
15585451 TAAAG-TGGTACCCAGTATCTCATCGAATCTATCCGAAG
1 TAAAGTTGACACCCAGTGTCTCATCGAACCTAGCCAAAG
*
15585489 TAAAATAGTGACACCCAGTGTCTCATCGA
1 TAAAGT--TGACACCCAGTGTCTCATCGA
15585518 CTCAAGGTTG
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
37 16 0.31
38 17 0.33
41 18 0.35
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (39 bp):
TAAAGTTGACACCCAGTGTCTCATCGAACCTAGCCAAAG
Found at i:15586175 original size:22 final size:24
Alignment explanation
Indices: 15586133--15586176 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
15586123 TAACTAAGTT
15586133 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
15586157 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
15586177 TCTTGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:15587239 original size:19 final size:19
Alignment explanation
Indices: 15587166--15587245 Score: 60
Period size: 18 Copynumber: 4.3 Consensus size: 19
15587156 TAAACTATTC
*
15587166 ATTAATTTAATA-ATATTAT
1 ATTAA-TTAATATATATAAT
*
15587185 ACTAATTAA-ATA-ATAAT
1 ATTAATTAATATATATAAT
* * *
15587202 TTATAATTTATATCT-TAAT
1 AT-TAATTAATATATATAAT
15587221 ATTAATTAATATATATAAT
1 ATTAATTAATATATATAAT
*
15587240 AATAAT
1 ATTAAT
15587246 CTAAAAAAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
17 5 0.11
18 21 0.46
19 20 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAATTAATATATATAAT
Found at i:15587242 original size:22 final size:20
Alignment explanation
Indices: 15587173--15587243 Score: 56
Period size: 22 Copynumber: 3.4 Consensus size: 20
15587163 TTCATTAATT
*
15587173 TAATAATATTATACTAATTAAA
1 TAATAATATTA-A-TAATTATA
15587195 TAATAAT-TT-ATAATTTATA
1 TAATAATATTAATAA-TTATA
**
15587214 TCTTAATATTAATTAATATATA
1 TAATAATATTAA-TAAT-TATA
15587236 TAATAATA
1 TAATAATA
15587244 ATCTAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
18 3 0.08
19 10 0.26
20 2 0.05
21 4 0.10
22 20 0.51
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
TAATAATATTAATAATTATA
Found at i:15589820 original size:46 final size:46
Alignment explanation
Indices: 15589767--15589859 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
15589757 ATTTGAATTG
15589767 CACTATATGATGTTTATGTTATTGAATTGTTGGTTGGTAAGTTTTA
1 CACTATATGATGTTTATGTTATTGAATTGTTGGTTGGTAAGTTTTA
15589813 CACTATATGATGTTTATGTTATTGAATTGTTGGTTGGTAAGTTTTA
1 CACTATATGATGTTTATGTTATTGAATTGTTGGTTGGTAAGTTTTA
15589859 C
1 C
15589860 TTACTTAGCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.05, G:0.22, T:0.49
Consensus pattern (46 bp):
CACTATATGATGTTTATGTTATTGAATTGTTGGTTGGTAAGTTTTA
Found at i:15589879 original size:8 final size:8
Alignment explanation
Indices: 15589866--15589900 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
15589856 TTACTTACTT
15589866 AGCATACG
1 AGCATACG
15589874 AGCATACG
1 AGCATACG
15589882 AGCATACG
1 AGCATACG
15589890 AGCATACG
1 AGCATACG
15589898 AGC
1 AGC
15589901 TTACTAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.37, C:0.26, G:0.26, T:0.11
Consensus pattern (8 bp):
AGCATACG
Found at i:15592461 original size:22 final size:21
Alignment explanation
Indices: 15592435--15592476 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
15592425 TTTTATGTCT
*
15592435 TTTATGTTTATTTTTAGAATTA
1 TTTATGTTTATGTTTA-AATTA
*
15592457 TTTATTTTTATGTTTAAATT
1 TTTATGTTTATGTTTAAATT
15592477 GAATAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTATGTTTATGTTTAAATTA
Found at i:15594499 original size:17 final size:17
Alignment explanation
Indices: 15594477--15594510 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15594467 TTTGGTAAGT
* *
15594477 TGTTAATTAAGTTAAAA
1 TGTTAAGTAAATTAAAA
15594494 TGTTAAGTAAATTAAAA
1 TGTTAAGTAAATTAAAA
15594511 GGTAAAAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
TGTTAAGTAAATTAAAA
Found at i:15596626 original size:40 final size:40
Alignment explanation
Indices: 15596545--15596765 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
15596535 AAACCAAGTA
** * *
15596545 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
15596584 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
15596624 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
15596664 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
15596704 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
15596744 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
15596766 CAATCCGAAT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 26 0.15
40 144 0.85
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:15604708 original size:40 final size:40
Alignment explanation
Indices: 15604644--15604864 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
15604634 AAACCAAGTA
** * * *
15604644 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
15604683 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
15604723 CCTTCGGGACATT-GCCCGGTTATAGTAAATCGCACAATTG
1 CCTTCGGGAC-TTAGCCCGGTTATAGTAACTCGCACAAATG
*
15604763 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
15604803 ACTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
15604843 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
15604865 CAATCCGAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 26 0.16
40 135 0.83
41 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:15609332 original size:30 final size:30
Alignment explanation
Indices: 15609298--15609358 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15609288 TTCCCGAGCC
15609298 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
15609328 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
15609358 T
1 T
15609359 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:15610173 original size:63 final size:66
Alignment explanation
Indices: 15610093--15610240 Score: 160
Period size: 66 Copynumber: 2.3 Consensus size: 66
15610083 AGACATTATG
* * * * *
15610093 ATGTAGCTAGGTGGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTA-GGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
*
15610155 T
66 A
* * *
15610156 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACCA-GTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
15610221 AA
65 AA
* *
15610223 AT-TGGCTAGGTCACATGG
1 ATGTAGCTAGGTCGCATGG
15610241 TACTGAGTGT
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
63 23 0.33
65 2 0.03
66 37 0.54
67 7 0.10
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.23
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
A
Found at i:15614604 original size:46 final size:45
Alignment explanation
Indices: 15614457--15614724 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 45
15614447 TGGGGTCAGG
* * * *
15614457 TGCCGATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGCATATCTG-
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACAC-TG-GCT-TCATCTC-GA
* *
15614507 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTC-A
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCGA
*
15614552 TAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGA
* * * * *
15614599 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGA
* * * * *
15614645 TACCGATGCCATATCCTAGACATGGTCTTACACTGGCTCTCATAAT-GT
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGA
15614693 TGCCGATGCATGTCCCAGACATGTCTTACACT
1 TGCCGATGCATGTCCCAGACATGTCTTACACT
15614725 AGCTCACACA
Statistics
Matches: 184, Mismatches: 24, Indels: 24
0.79 0.10 0.10
Matches are distributed among these distances:
44 12 0.07
45 15 0.08
46 73 0.40
47 26 0.14
48 23 0.12
49 2 0.01
50 33 0.18
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGA
Found at i:15614699 original size:94 final size:94
Alignment explanation
Indices: 15614458--15614732 Score: 321
Period size: 94 Copynumber: 2.9 Consensus size: 94
15614448 GGGGTCAGGT
** * *
15614458 GCCGATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGCATATCTGTGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-CATATGT-TGCCGATG-CATGTCC
15614523 CAGACATGGTCTTACACT-G-ACACATCTCATA
63 CAGACAT-GTCTTACACTAGCACACATCTCATA
* * **
15614554 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGCCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATAT-GTTGCCGATGCATGTCCCA
* *
15614616 GACATGTCTTACACTAGCACTCGTCTCAATA
65 GACATGTCTTACACTAGCACACATCTC-ATA
* *
15614647 -CCGATGCCATATCCTAGACATGGTCTTACACTGGCTCT-CATAATGTTGCCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATGTTGCCGATGCATGTCCCA
*
15614710 GACATGTCTTACACTAGCTCACA
65 GACATGTCTTACACTAGCACACA
15614733 CAAGTGACCC
Statistics
Matches: 152, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
90 10 0.07
91 15 0.10
92 23 0.15
93 17 0.11
94 64 0.42
95 16 0.11
96 7 0.05
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATGTTGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACACATCTCATA
Found at i:15617107 original size:48 final size:49
Alignment explanation
Indices: 15616982--15617263 Score: 261
Period size: 48 Copynumber: 5.8 Consensus size: 49
15616972 GTAAGATGCT
* * * * *
15616982 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATATCAGT-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATATCAATGGCC
* * * * *
15617032 GATGCCATGTTCCA-AAACTGATATTACACTAGCTCACATATC-ATGGCT
1 GATGCCATGTCCCAGACA-TGGTCTTACACTAGCTCACATATCAATGGCC
* * *
15617080 GATGCGATGTCCCAGACATGGTCTTACACTAGTTCTCATATCAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGGCC
* * * * *
15617128 GATGCTATGTTCCAAACATGATCTTACACTAGCTCACATATCGA-GGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGGCC
* * * *
15617176 GATGCCATGTCCCAGACATGTTCTTACACTAACTCTCACATCAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGGCC
** * *
15617224 GATGCCATGTTGCAAACATGGTCTTACACTAGCTTACATA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
15617264 ACCCTAGTAT
Statistics
Matches: 185, Mismatches: 41, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
47 1 0.01
48 155 0.84
49 6 0.03
50 23 0.12
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGGCC
Found at i:15617166 original size:96 final size:96
Alignment explanation
Indices: 15616979--15617263 Score: 385
Period size: 96 Copynumber: 2.9 Consensus size: 96
15616969 AGCGTAAGAT
* * * *
15616979 GCTGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATATCAGTGTCGATGCCATGTTC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTC
*
15617044 CAAA-ACTGATATTACACTAGCTCACATATC-ATG
64 CAAACA-TGATCTTACACTAGCTCACATATCGA-G
* * *
15617077 GCTGATGCGATGTCCCAGACATGGTCTTACACTAGTTCTCATATCAATGCCGATGCTATGTTCCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
15617142 AACATGATCTTACACTAGCTCACATATCGAG
66 AACATGATCTTACACTAGCTCACATATCGAG
* * * * *
15617173 GCCGATGCCATGTCCCAGACATGTTCTTACACTAACTCTCACATCAATGCCGATGCCATGTTGCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
* *
15617238 AACATGGTCTTACACTAGCTTACATA
66 AACATGATCTTACACTAGCTCACATA
15617264 ACCCTAGTAT
Statistics
Matches: 167, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
96 129 0.77
97 2 0.01
98 36 0.22
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCA
AACATGATCTTACACTAGCTCACATATCGAG
Found at i:15623456 original size:17 final size:17
Alignment explanation
Indices: 15623418--15623456 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
15623408 GGCATGTATA
* *
15623418 GCTAGATTCATACACAT
1 GCTAGACTCATACACAC
*
15623435 ACTAGACTCATACACAC
1 GCTAGACTCATACACAC
15623452 GCTAG
1 GCTAG
15623457 GTTAGTTCAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (17 bp):
GCTAGACTCATACACAC
Found at i:15625083 original size:48 final size:48
Alignment explanation
Indices: 15625001--15625169 Score: 202
Period size: 48 Copynumber: 3.5 Consensus size: 48
15624991 CATATCCTAG
* * *
15625001 ACATGGTCTTACACTAGCTCCCATATCAATGCCGATGCTATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATATCAAGGCCGATGCCATGTTCCAA
* *
15625049 ACATTGTCTTACACTAGCT-T-ACTAAT-AGAGGCCGATGCCATG-TCCTAG
1 ACATGGTCTTACACTAGCTCTCA-T-ATCA-AGGCCGATGCCATGTTCC-AA
*
15625097 ACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATATCAAGGCCGATGCCATGTTCCAA
* *
15625145 ACATGGTCTTACACTGGCTCACATA
1 ACATGGTCTTACACTAGCTCTCATA
15625170 ACCCTAGTAT
Statistics
Matches: 103, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
46 1 0.01
47 5 0.05
48 90 0.87
49 6 0.06
50 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCTCATATCAAGGCCGATGCCATGTTCCAA
Found at i:15625159 original size:96 final size:96
Alignment explanation
Indices: 15624985--15625159 Score: 305
Period size: 96 Copynumber: 1.8 Consensus size: 96
15624975 GGTAAGATAT
*
15624985 CGATACCATATCCTAGACATGGTCTTACACTAGCTCCCATATCAATGCCGATGCTATGTTCCAAA
1 CGATACCATATCCTAGACATGGTCTTACACTAGCTCCCATATCAATGCCGATGCCATGTTCCAAA
*
15625050 CATTGTCTTACACTAGCTTACTAATAGAGGC
66 CATGGTCTTACACTAGCTTACTAATAGAGGC
* * *
15625081 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
1 CGATACCATATCCTAGACATGGTCTTACACTAGCTCCCATATCAATGCCGATGCCATGTTCCAAA
15625146 CATGGTCTTACACT
66 CATGGTCTTACACT
15625160 GGCTCACATA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (96 bp):
CGATACCATATCCTAGACATGGTCTTACACTAGCTCCCATATCAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTAGCTTACTAATAGAGGC
Found at i:15626813 original size:16 final size:16
Alignment explanation
Indices: 15626766--15626813 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
15626756 CGTAAATCCT
*
15626766 GAAATGCCGAAAA-GTT
1 GAAATGCC-AAAATGTC
*
15626782 GAAATGTCAAAATGTC
1 GAAATGCCAAAATGTC
15626798 GAAATGCCAAAATGTC
1 GAAATGCCAAAATGTC
15626814 AAAAAGCTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.21
Consensus pattern (16 bp):
GAAATGCCAAAATGTC
Found at i:15626816 original size:8 final size:8
Alignment explanation
Indices: 15626783--15626817 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
15626773 CGAAAAGTTG
15626783 AAATGTCA
1 AAATGTCA
*
15626791 AAATGTCG
1 AAATGTCA
*
15626799 AAATGCCA
1 AAATGTCA
15626807 AAATGTCA
1 AAATGTCA
15626815 AAA
1 AAA
15626818 AGCTGAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.20
Consensus pattern (8 bp):
AAATGTCA
Found at i:15627077 original size:29 final size:29
Alignment explanation
Indices: 15627035--15627159 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
15627025 GAAAGCATGT
*
15627035 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
15627064 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
15627093 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
15627122 ATGTGAATGAGA-TTGGGCCTAGTCGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
15627150 ATATGCATGT
1 ATATGAATGT
15627160 ATGTAGACTT
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 21 0.24
29 65 0.76
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:15631628 original size:39 final size:39
Alignment explanation
Indices: 15631576--15631746 Score: 202
Period size: 39 Copynumber: 4.3 Consensus size: 39
15631566 GGACTAAGAT
*
15631576 CCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAA-ATCCGGGTTAAGTC
*
15631615 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
15631655 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
15631695 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
15631734 CCGAAGGCATTTG
1 CCGAAGGCATTTG
15631747 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
39 65 0.57
40 50 0.43
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:15631659 original size:79 final size:79
Alignment explanation
Indices: 15631523--15631746 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
15631513 TTGAATGCTG
* * * * * * *
15631523 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
*
15631586 TTGTGCGAGATA-CAAGT
63 TTGTGCGAGATATCAA-A
* * * *
15631603 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* *
15631667 GTGCGAGTTATTAAA
65 GTGCGAGATATCAAA
* * *
15631682 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
15631747 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 90 0.74
80 30 0.25
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:15631764 original size:79 final size:80
Alignment explanation
Indices: 15631603--15631779 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
15631593 AGATACAAGT
* * *
15631603 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
15631667 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
15631682 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
15631746 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
15631761 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
15631780 TATGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:15636046 original size:6 final size:6
Alignment explanation
Indices: 15636028--15636066 Score: 69
Period size: 6 Copynumber: 6.3 Consensus size: 6
15636018 CTGTTCTATT
15636028 TATCTG TTATCTG TATCTG TATCTG TATCTG TATCTG TA
1 TATCTG -TATCTG TATCTG TATCTG TATCTG TATCTG TA
15636067 AAGGATTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (6 bp):
TATCTG
Found at i:15649210 original size:31 final size:31
Alignment explanation
Indices: 15649175--15649237 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
15649165 AATTACACAG
15649175 TCCCTTATTTGAGTCTACGGAGCCCAAAACA
1 TCCCTTATTTGAGTCTACGGAGCCCAAAACA
15649206 TCCCTTATTTGAGTCTACGGAGCCCAAAACA
1 TCCCTTATTTGAGTCTACGGAGCCCAAAACA
15649237 T
1 T
15649238 ACTTTAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (31 bp):
TCCCTTATTTGAGTCTACGGAGCCCAAAACA
Found at i:15650846 original size:49 final size:49
Alignment explanation
Indices: 15650793--15650974 Score: 213
Period size: 51 Copynumber: 3.7 Consensus size: 49
15650783 CTGGTACGCA
* *
15650793 TAGTAGCCTGCACTTAGTACTACATATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * * *
15650842 TAGTAGCCTG-ACTTAGTACTACACACGTGACCTAACTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * ** *
15650891 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
*
15650942 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
15650975 TAGCTACATA
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
48 19 0.17
49 33 0.29
50 23 0.20
51 38 0.34
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:15650995 original size:98 final size:98
Alignment explanation
Indices: 15650777--15650976 Score: 256
Period size: 98 Copynumber: 2.0 Consensus size: 98
15650767 TATGTAGCCA
* * * * * *
15650777 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
*
15650842 TAGTAGCCTGACTTAGTACTACACACGTGACCT
66 TAGTAGCCTGACTTAGTACTACACACGCGACCT
* * * **
15650875 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTATG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
*
15650940 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT
64 CATAGTAGCCTG-ACTTAGTACTACACACGCGACCT
15650976 A
1 A
15650977 GCTACATATA
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
98 41 0.48
99 3 0.03
100 20 0.23
101 22 0.26
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (98 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGACTTAGTACTACACACGCGACCT
Found at i:15651816 original size:30 final size:30
Alignment explanation
Indices: 15651782--15651842 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
15651772 TCCTTAACTC
15651782 AAACTTTTACAAATTTACAATTTTGCCCCT
1 AAACTTTTACAAATTTACAATTTTGCCCCT
* * *
15651812 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTACAAATTTACAATTTTGCCCCT
15651842 A
1 A
15651843 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAATTTACAATTTTGCCCCT
Found at i:15654440 original size:28 final size:28
Alignment explanation
Indices: 15654400--15654523 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
15654390 ATATTAAGTC
* *
15654400 CGCACACTCAGTGCTATGTAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
15654428 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
15654456 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
15654484 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
15654513 CGCACACTTAG
1 CGCACACTTAG
15654524 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 73 0.82
29 16 0.18
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:15662461 original size:28 final size:28
Alignment explanation
Indices: 15662398--15662520 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
15662388 ATATTAAGTC
*
15662398 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
15662425 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
15662453 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
15662481 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
15662510 CGCACACTTAG
1 CGCACACTTAG
15662521 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.25
28 51 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:15664490 original size:20 final size:20
Alignment explanation
Indices: 15664465--15664520 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
15664455 AGATAGGGGC
*
15664465 ACATGCCCGTGTGGCCTGGG
1 ACATGCCCGTGCGGCCTGGG
*
15664485 ACATGCCCGTGCGGCTTGGG
1 ACATGCCCGTGCGGCCTGGG
*
15664505 ACATGCCCGTGGGGCC
1 ACATGCCCGTGCGGCC
15664521 AAGTCGTGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.32, G:0.39, T:0.18
Consensus pattern (20 bp):
ACATGCCCGTGCGGCCTGGG
Found at i:15666423 original size:16 final size:17
Alignment explanation
Indices: 15666402--15666433 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15666392 TAACATATAT
15666402 ATTATTAT-ATTATTAA
1 ATTATTATAATTATTAA
15666418 ATTATTATAATTATTA
1 ATTATTATAATTATTA
15666434 TTTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATTATAATTATTAA
Found at i:15671979 original size:46 final size:44
Alignment explanation
Indices: 15671921--15672047 Score: 141
Period size: 47 Copynumber: 2.8 Consensus size: 44
15671911 TCACTTGTGT
15671921 GAGCTAGTGTAAGACATGTCTTGGACATGCATCGGCCACATTATGA-
1 GAGCTAGTGTAAGACATGTCTTGGACATGCATC-G--ACATTATGAC
* *
15671967 GAGCCAGTGTAAGACCATGT-TTGGGACATGGCATCGACATTGTGAC
1 GAGCTAGTGTAAGA-CATGTCTT-GGACAT-GCATCGACATTATGAC
*
15672013 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GA--GCTAGTGTAAGACATGTCTTGGACATGCATC
15672048 AGCTACGAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 14
0.80 0.05 0.16
Matches are distributed among these distances:
45 8 0.11
46 22 0.31
47 23 0.33
48 17 0.24
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTTGGACATGCATCGACATTATGAC
Found at i:15672092 original size:92 final size:93
Alignment explanation
Indices: 15671923--15672092 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 93
15671913 ACTTGTGTGA
* * *
15671923 GCTAGTGTAAGACATGTCTTGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGAT-AGAGCCAGTGTAAGACCATGTT
15671988 TGGGACATGGCATCGACATTGTGACGAGT
65 TGGGACATGGCATCGACATTGTGACGAGT
* * *
15672017 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GAT-GTGTCAGTGTAAGACCATGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATAGAGCCAGTGTAAGACCATGTT
15672080 TGGGACATGGCAT
65 TGGGACATGGCAT
15672093 TGGCACCTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 32 0.46
94 36 0.52
95 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATAGAGCCAGTGTAAGACCATGTTT
GGGACATGGCATCGACATTGTGACGAGT
Found at i:15675025 original size:46 final size:45
Alignment explanation
Indices: 15674972--15675189 Score: 199
Period size: 46 Copynumber: 4.7 Consensus size: 45
15674962 TATTGTGGGA
* *
15674972 TAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATC-GCCACGA-GACGAGAGC
** *
15675018 TAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAGACGAGTGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCA-CGAGACGAGAGC
* *
15675066 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTA-AGC
1 TAGTGTAAGACATGTCTGGGACATGCATC-GCCACGAGACG-AGAGC
* * * * * *
15675112 CAGTGTAAGACATGTCTGGGACATGCATTGGCTAAGAGATGATAG-
1 TAGTGTAAGACATGTCTGGGACATGCA-TCGCCACGAGACGAGAGC
15675157 TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
15675190 GCACCTTACC
Statistics
Matches: 142, Mismatches: 19, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
45 1 0.01
46 67 0.47
47 48 0.34
48 25 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGCCACGAGACGAGAGC
Found at i:15675776 original size:24 final size:25
Alignment explanation
Indices: 15675742--15675793 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
15675732 TGTTATGTTC
*
15675742 ATGGATAAGTAAAATGCACAAAT-A
1 ATGGATAAGTAAAATACACAAATGA
* *
15675766 ATGGATGAGTAAGATACACAAATGA
1 ATGGATAAGTAAAATACACAAATGA
15675791 ATG
1 ATG
15675794 TTTTCTATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (25 bp):
ATGGATAAGTAAAATACACAAATGA
Found at i:15682635 original size:46 final size:46
Alignment explanation
Indices: 15682544--15682767 Score: 154
Period size: 46 Copynumber: 4.8 Consensus size: 46
15682534 ACATTATGAG
* *
15682544 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACG-A
1 AGCCAGAGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGACGTA
* * *
15682591 ATGCTAGAGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACGTA
1 A-GCCAGAGTAAGACATGTCTAGGACATGCATCGGCATCGAGACGTA
* *
15682638 AGCCAGTGTAAGACATGTC-AGGGACATGCATCGGC-TACGAGATG-A
1 AGCCAGAGTAAGACATGTCTA-GGACATGCATCGGCAT-CGAGACGTA
* * * * * * *
15682683 TAGTCAGTGTAAGACCATGTCTGGGGCATGGCATCGACAT-GAGA-TTG
1 -AGCCAGAGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGACGTA
* * * *
15682730 AGCTAGTGTAAGACCATGTCTGGGACACAGCATCGGCA
1 AGCCAGAGTAAGA-CATGTCTAGGACA-TGCATCGGCA
15682768 CCTTACCCAC
Statistics
Matches: 146, Mismatches: 20, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 94 0.64
47 31 0.21
48 17 0.12
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (46 bp):
AGCCAGAGTAAGACATGTCTAGGACATGCATCGGCATCGAGACGTA
Found at i:15682763 original size:140 final size:140
Alignment explanation
Indices: 15682502--15682766 Score: 360
Period size: 140 Copynumber: 1.9 Consensus size: 140
15682492 ATTGTGGGCT
*
15682502 AGTGTAAGACATGTATGGGACATGCATCAGCTACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTATGGGACATGCATCAGCTACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* *
15682567 GACATGGCATCGGCATCGAGACGAATGCTAGAGTAAGACATGTCTAGGACATGCATCGGCCTTGA
66 GACATGGCATCGACATCGAGACGAATGCTAGAGTAAGACATGTCTAGGACAAGCATCGGCCTTGA
15682632 GACGTAAGCC
131 GACGTAAGCC
* * *
15682642 AGTGTAAGACATGTCA-GGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGT-ATGGGACATGCATCAGCTAC-ATGATGAGAGCCAGTGTAAGACCATGTCT
* * * *
15682705 GGGGCATGGCATCGACAT-GAGATTG-A-GCTAGTGTAAGACCATGTCTGGGACACAGCATCGGC
64 GGGACATGGCATCGACATCGAGA-CGAATGCTAGAGTAAGA-CATGTCTAGGACA-AGCATCGGC
15682767 ACCTTACCCA
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
138 11 0.10
139 17 0.15
140 80 0.73
141 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (140 bp):
AGTGTAAGACATGTATGGGACATGCATCAGCTACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATCGAGACGAATGCTAGAGTAAGACATGTCTAGGACAAGCATCGGCCTTGA
GACGTAAGCC
Found at i:15692056 original size:17 final size:19
Alignment explanation
Indices: 15692028--15692064 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
15692018 TGTAAAACCC
15692028 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
15692046 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
15692064 A
1 A
15692065 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:15700623 original size:24 final size:24
Alignment explanation
Indices: 15700588--15700695 Score: 141
Period size: 24 Copynumber: 4.6 Consensus size: 24
15700578 GAAGTGAAAG
* *
15700588 GCTG-TAA-GGAGAAGATTTGGGA
1 GCTGATAAGGGAGAGGATTTAGGA
15700610 GCTGATAAGGGAGAGGATTTAGGA
1 GCTGATAAGGGAGAGGATTTAGGA
*
15700634 GCTGATAAGGGA-AGGGATTTAGAA
1 GCTGATAAGGGAGA-GGATTTAGGA
*
15700658 GTTGATAAGGGAGAGGATTTAGGA
1 GCTGATAAGGGAGAGGATTTAGGA
*
15700682 GCTGATTAGGGAGA
1 GCTGATAAGGGAGA
15700696 ATGGTGTTGG
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
22 4 0.05
23 4 0.05
24 66 0.88
25 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.41, T:0.22
Consensus pattern (24 bp):
GCTGATAAGGGAGAGGATTTAGGA
Found at i:15702199 original size:54 final size:52
Alignment explanation
Indices: 15702117--15702221 Score: 147
Period size: 54 Copynumber: 2.0 Consensus size: 52
15702107 GGAAGTGTCC
* *
15702117 TGGTGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTT
1 TGGTGCTATGCCACAATTATCTGATCTGGTGACACTACCACAT-TATCTGTTT
* * *
15702170 TGGTGGCTCTGCCACAATTATCTGTTCTGGTGACACTATCACATTATCTGTT
1 TGGT-GCTATGCCACAATTATCTGATCTGGTGACACTACCACATTATCTGTT
15702222 CTGGCAGCCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 12 0.26
54 34 0.74
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (52 bp):
TGGTGCTATGCCACAATTATCTGATCTGGTGACACTACCACATTATCTGTTT
Found at i:15702222 original size:26 final size:26
Alignment explanation
Indices: 15702125--15702225 Score: 121
Period size: 27 Copynumber: 3.8 Consensus size: 26
15702115 CCTGGTGCTA
*
15702125 TGCCACAATTATCTGATCTGGTGGCAC
1 TGCCAC-ATTATCTGTTCTGGTGGCAC
* *
15702152 TGCCACATATATCTGTTTTGGTGGCTC
1 TGCCACAT-TATCTGTTCTGGTGGCAC
*
15702179 TGCCACAATTATCTGTTCTGGTGACAC
1 TGCCAC-ATTATCTGTTCTGGTGGCAC
**
15702206 TATCACATTATCTGTTCTGG
1 TGCCACATTATCTGTTCTGG
15702226 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
26 16 0.25
27 46 0.72
28 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGGCAC
Found at i:15713529 original size:42 final size:41
Alignment explanation
Indices: 15713463--15713583 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 41
15713453 GGGTTACTAC
*
15713463 GATTACGTGTAAGACCATATTTGGGATATGGAATTGATATGA
1 GATTACGTGTAAGACCATA-TTGGGATATGGCATTGATATGA
* * * *
15713505 GACTT-TGTGTAAGACCATAGTTGGGCTATTAGCATCGATATGA
1 GA-TTACGTGTAAGACCATA-TTGGGATA-TGGCATTGATATGA
*
15713548 GATTACATGTAAGACCATATCTGGGATATGGCATTG
1 GATTACGTGTAAGACCATAT-TGGGATATGGCATTG
15713584 GTACAGTAGT
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.32
Consensus pattern (41 bp):
GATTACGTGTAAGACCATATTGGGATATGGCATTGATATGA
Found at i:15715224 original size:20 final size:20
Alignment explanation
Indices: 15715199--15715250 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
15715189 CGGGTTCGGG
15715199 ACACGGGTGTGTCCCAAACC
1 ACACGGGTGTGTCCCAAACC
* *
15715219 ACACGGGCGTGTTCCAAACC
1 ACACGGGTGTGTCCCAAACC
* *
15715239 ACTCGAGTGTGT
1 ACACGGGTGTGT
15715251 GACCCTTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (20 bp):
ACACGGGTGTGTCCCAAACC
Found at i:15728755 original size:24 final size:24
Alignment explanation
Indices: 15728728--15728813 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
15728718 TGTTTCCTCA
15728728 CACACATAGTGCTATATAATCTCG
1 CACACATAGTGCTATATAATCTCG
* * * * *
15728752 CACACATAGTGCCATGTAGTTTTTG
1 CACACATAGTGCTATATA-ATCTCG
** *
15728777 CACACATAGTG-TCGCATAACCTCG
1 CACACATAGTGCT-ATATAATCTCG
15728801 CACACATAGTGCT
1 CACACATAGTGCT
15728814 GAAATTTCTT
Statistics
Matches: 46, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
24 29 0.63
25 17 0.37
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (24 bp):
CACACATAGTGCTATATAATCTCG
Found at i:15733059 original size:42 final size:42
Alignment explanation
Indices: 15733000--15733121 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
15732990 TTAGGGTTAC
*
15733000 TAAGATTACGTGTAAGACCATATATGGGATATGGCATCGATA
1 TAAGATTACATGTAAGACCATATATGGGATATGGCATCGATA
** * * *
15733042 TAAGACTT-CATGTAAGACCATAGCTAGGTTATTGACATCGATA
1 TAAGA-TTACATGTAAGACCATATATGGGATA-TGGCATCGATA
* *
15733085 TGAGATTACATGTGAGACCATATATGGGATATGGCAT
1 TAAGATTACATGTAAGACCATATATGGGATATGGCAT
15733122 TGGTACGGTA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGATTACATGTAAGACCATATATGGGATATGGCATCGATA
Found at i:15743300 original size:79 final size:81
Alignment explanation
Indices: 15743187--15743369 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
15743177 TACTCGTTCA
* *
15743187 AATGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
15743250 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
15743267 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
15743330 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
15743346 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
15743370 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:15743369 original size:40 final size:40
Alignment explanation
Indices: 15743166--15743369 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
15743156 CGGAATTTAA
** *
15743166 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
15743206 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
15743246 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
15743285 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
15743325 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
15743365 CCGGA
1 CCGGA
15743370 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:15746135 original size:8 final size:8
Alignment explanation
Indices: 15746093--15746117 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
15746083 ATATAGACTA
15746093 AATAAAAT
1 AATAAAAT
15746101 AATAAAAT
1 AATAAAAT
15746109 AATAAAAT
1 AATAAAAT
15746117 A
1 A
15746118 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:15746141 original size:29 final size:31
Alignment explanation
Indices: 15746090--15746158 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
15746080 TATATATAGA
*
15746090 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
15746119 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
15746150 CTAATTAAA
1 CTAATTAAA
15746159 TAGCTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:15748017 original size:37 final size:37
Alignment explanation
Indices: 15747958--15748103 Score: 222
Period size: 37 Copynumber: 3.9 Consensus size: 37
15747948 AGCTCAGACG
* *
15747958 AAATCTCTACACGAAG-CTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTC-ATCGGGTCTTACCCGGACA
15747995 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
15748032 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
15748069 TAATCTTCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
15748104 ATATATTTCC
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
37 102 0.99
38 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:15748308 original size:52 final size:52
Alignment explanation
Indices: 15748250--15748392 Score: 268
Period size: 52 Copynumber: 2.8 Consensus size: 52
15748240 GCACATCGCC
* *
15748250 TACATATTTCACACTAGCCATTCGGCTTTACCATATATACATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
15748302 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
15748354 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
15748393 TGTATGTTCA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (52 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
Found at i:15748414 original size:47 final size:47
Alignment explanation
Indices: 15748362--15748555 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
15748352 CATACATATT
* * * * *
15748362 TCACATTAGCCATTCGGCTTTACCACATATATGTATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
15748409 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
15748456 TCACATTGGCCATTCGGCCTTTTCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
15748503 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
15748550 TCACAT
1 TCACAT
15748556 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:15760916 original size:20 final size:18
Alignment explanation
Indices: 15760879--15760929 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
15760869 CTATAGCAAC
15760879 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
15760896 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
15760916 TTACAACTTTACAA
1 TCACAA-TTTACAA
15760930 AATAGCACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:15767838 original size:40 final size:40
Alignment explanation
Indices: 15767662--15767884 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
15767652 TCCTCGTTCA
* * * * *
15767662 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15767701 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
15767741 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
15767781 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
15767821 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
15767861 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15767885 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15775728 original size:40 final size:40
Alignment explanation
Indices: 15775552--15775774 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
15775542 TCCTCGTTCA
* * * * *
15775552 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
15775591 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
15775631 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
15775671 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
15775711 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
15775751 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15775775 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:15778415 original size:27 final size:27
Alignment explanation
Indices: 15778383--15778445 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
15778373 CTCGATTTAC
**
15778383 AAAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * * *
15778410 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
15778437 AAAATTACC
1 AAAATTACC
15778446 ATTTTGCCCT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:15778455 original size:27 final size:27
Alignment explanation
Indices: 15778425--15778488 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
15778415 TACCGAGATA
*
15778425 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* ** *
15778452 CCCTTAG-GGTGTTGAATGACTATTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
15778479 CCCTTGTGGG
1 CCCTTGTGGG
15778489 CAAGTGATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:15779063 original size:6 final size:6
Alignment explanation
Indices: 15779045--15779142 Score: 67
Period size: 6 Copynumber: 16.0 Consensus size: 6
15779035 ACATTTTGAC
* * * *
15779045 TCTGAT ACTGAT TCTGAT TCT-AT CACCTAAT TCTGAT TCTGAT TCAG-T
1 TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT TCTGAT
* * *
15779093 CACCTGAT TCTGAT TCTGAT TCTGAT TCTCAT TTTGAT TCT-AGT TCTGAT
1 --TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGA-T TCTGAT
15779143 AATGTTTCTT
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
5 4 0.06
6 59 0.83
7 5 0.07
8 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.46
Consensus pattern (6 bp):
TCTGAT
Found at i:15779080 original size:25 final size:26
Alignment explanation
Indices: 15779052--15779115 Score: 105
Period size: 25 Copynumber: 2.5 Consensus size: 26
15779042 GACTCTGATA
15779052 CTGATTCTGATTCTA-TCACCTAATT
1 CTGATTCTGATTCTAGTCACCTAATT
*
15779077 CTGATTCTGATTC-AGTCACCTGATT
1 CTGATTCTGATTCTAGTCACCTAATT
15779102 CTGATTCTGATTCT
1 CTGATTCTGATTCT
15779116 GATTCTCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.44
Consensus pattern (26 bp):
CTGATTCTGATTCTAGTCACCTAATT
Found at i:15780624 original size:20 final size:18
Alignment explanation
Indices: 15780587--15780637 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
15780577 CTATAGCAAC
15780587 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
15780604 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
15780624 TTACAACTTTACAA
1 TCACAA-TTTACAA
15780638 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:15782269 original size:29 final size:28
Alignment explanation
Indices: 15782223--15782282 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
15782213 TTTTCATTTA
*
15782223 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCACAATTTAACCCCT-AATATACACT
* * *
15782252 TTTCTCAATTTAATCCCTAATATGCACT
1 TTTCACAATTTAACCCCTAATATACACT
15782280 TTT
1 TTT
15782283 ACTAAAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.28, C:0.27, G:0.02, T:0.43
Consensus pattern (28 bp):
TTTCACAATTTAACCCCTAATATACACT
Found at i:15783905 original size:41 final size:41
Alignment explanation
Indices: 15783850--15784010 Score: 277
Period size: 41 Copynumber: 3.9 Consensus size: 41
15783840 TTTCCAAATC
15783850 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
* *
15783891 AATGAAATGTTTGAAAAGGATGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
*
15783932 AATGAAATGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
**
15783973 AATGAAAAGGTTGAAAAGGATGTTATTAAAAAAGGATA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATA
15784011 AAAAATTTAA
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 114 1.00
ACGTcount: A:0.48, C:0.06, G:0.22, T:0.24
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
Found at i:15785305 original size:18 final size:18
Alignment explanation
Indices: 15785278--15785320 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
15785268 CCCTGTGACC
*
15785278 TCTG-TTTTCC-AACTTT
1 TCTGTTTTTCCAAAATTT
15785294 TCATGTTTTTCCAAAATTT
1 TC-TGTTTTTCCAAAATTT
15785313 TCTGTTTT
1 TCTGTTTT
15785321 GTTTCGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 2 0.09
18 12 0.52
19 7 0.30
ACGTcount: A:0.16, C:0.19, G:0.07, T:0.58
Consensus pattern (18 bp):
TCTGTTTTTCCAAAATTT
Found at i:15789077 original size:29 final size:28
Alignment explanation
Indices: 15789035--15789116 Score: 119
Period size: 29 Copynumber: 2.9 Consensus size: 28
15789025 TAAACCACTT
*
15789035 GGCCCAATCTCATTTATATGGCCCATCA
1 GGCCCAATCACATTTATATGGCCCATCA
*
15789063 GGCCCAATTCACATTCATATGGCCCATCA
1 GGCCCAA-TCACATTTATATGGCCCATCA
*
15789092 GGCCCAAATCACCTTTATATGGCCC
1 GGCCC-AATCACATTTATATGGCCC
15789117 GTTACGCCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
28 7 0.15
29 39 0.81
30 2 0.04
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.26
Consensus pattern (28 bp):
GGCCCAATCACATTTATATGGCCCATCA
Found at i:15789125 original size:29 final size:29
Alignment explanation
Indices: 15789047--15789139 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 29
15789037 CCCAATCTCA
* *
15789047 TTTATATGGCCCATCAGGCCCAATTCACA
1 TTTATATGGCCCATCAGGCCCAAATCACC
*
15789076 TTCATATGGCCCATCAGGCCCAAATCACC
1 TTTATATGGCCCATCAGGCCCAAATCACC
* * * *
15789105 TTTATATGGCCCGTTACGCCCAAATCATC
1 TTTATATGGCCCATCAGGCCCAAATCACC
15789134 -TTATAT
1 TTTATAT
15789140 TTATGCTCAC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 6 0.11
29 50 0.89
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
TTTATATGGCCCATCAGGCCCAAATCACC
Found at i:15790992 original size:24 final size:24
Alignment explanation
Indices: 15790965--15791048 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
15790955 TATGACGCCT
*
15790965 TTGTGGCTTATTCTGAAAGTGTCC
1 TTGTGGCATATTCTGAAAGTGTCC
* *
15790989 TTGTAGCATATTCTGAAAGTGTCT
1 TTGTGGCATATTCTGAAAGTGTCC
** * *
15791013 TTGTTACGTATTCTAAAAGTG-CC
1 TTGTGGCATATTCTGAAAGTGTCC
15791036 TTTGTGGCATATT
1 -TTGTGGCATATT
15791049 ATATAAATGC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
23 1 0.02
24 47 0.98
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (24 bp):
TTGTGGCATATTCTGAAAGTGTCC
Found at i:15801704 original size:18 final size:18
Alignment explanation
Indices: 15801681--15801717 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15801671 CCCCACGGTG
15801681 AAAGCTCAGTCTCACAAA
1 AAAGCTCAGTCTCACAAA
15801699 AAAGCTCAGTCTCACAAA
1 AAAGCTCAGTCTCACAAA
15801717 A
1 A
15801718 CTCTTGTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.27, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAGCTCAGTCTCACAAA
Found at i:15807899 original size:7 final size:7
Alignment explanation
Indices: 15807889--15807913 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15807879 TTGAGGGGTG
15807889 TGGGGAT
1 TGGGGAT
15807896 TGGGGAT
1 TGGGGAT
15807903 TGGGGAT
1 TGGGGAT
15807910 TGGG
1 TGGG
15807914 TAGCCAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.60, T:0.28
Consensus pattern (7 bp):
TGGGGAT
Found at i:15810566 original size:27 final size:27
Alignment explanation
Indices: 15810506--15810568 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
15810496 GGTGTCTCAG
**
15810506 TAATTCTACCCTACAGGGTTATTTCGG
1 TAATTCTACCCTACAGGGTTATTTCCA
* *
15810533 TATTTCTACCTTACAAGGG-TATTTCCA
1 TAATTCTACCCTAC-AGGGTTATTTCCA
15810560 TAATTCTAC
1 TAATTCTAC
15810569 AACTTAACCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGTTATTTCCA
Found at i:15817197 original size:27 final size:27
Alignment explanation
Indices: 15817145--15817197 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
15817135 GTGAAGCTGC
* *
15817145 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACAAGATA
*
15817172 CAGATATTGTGGC-AAGGCCACAAGAT
1 CAGATATTGTGACGAA-GCCACAAGAT
15817198 TGCTGCGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACAAGATA
Found at i:15817820 original size:26 final size:25
Alignment explanation
Indices: 15817791--15817842 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
15817781 TCACACAAGT
15817791 TAGTCATTTACGCACGAGGGGCAAAA
1 TAGTCATTTAC-CACGAGGGGCAAAA
* *
15817817 TAGTCATTTACCCCTAGGGGCAAAA
1 TAGTCATTTACCACGAGGGGCAAAA
15817842 T
1 T
15817843 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (25 bp):
TAGTCATTTACCACGAGGGGCAAAA
Found at i:15817841 original size:25 final size:25
Alignment explanation
Indices: 15817791--15817856 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
15817781 TCACACAAGT
*
15817791 TAGTCATTTACGCACGAGGGGCAAAA
1 TAGTCATTTAC-CCCGAGGGGCAAAA
*
15817817 TAGTCATTTACCCCTAGGGGCAAAA
1 TAGTCATTTACCCCGAGGGGCAAAA
* *
15817842 TGGTAATTTTACCCC
1 TAGTCA-TTTACCCC
15817857 ACAAGGTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 16 0.46
26 19 0.54
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
TAGTCATTTACCCCGAGGGGCAAAA
Found at i:15817852 original size:26 final size:25
Alignment explanation
Indices: 15817807--15817856 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
15817797 TTTACGCACG
*
15817807 AGGGGCAAAATAGTCATTTACCCCT
1 AGGGGCAAAATAGTAATTTACCCCT
*
15817832 AGGGGCAAAATGGTAATTTTACCCC
1 AGGGGCAAAATAGTAA-TTTACCCC
15817857 ACAAGGTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
AGGGGCAAAATAGTAATTTACCCCT
Found at i:15818901 original size:27 final size:27
Alignment explanation
Indices: 15818844--15818901 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
15818834 ACCCTTAATC
* * ** *
15818844 GATAAAATGACTATTATGCCCTTGTGT
1 GATAAAATGACTATTAGGCCCCTACGA
*
15818871 GATAAAATGACTGTTAGGCCCCTACGA
1 GATAAAATGACTATTAGGCCCCTACGA
15818898 GATA
1 GATA
15818902 TATGATTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (27 bp):
GATAAAATGACTATTAGGCCCCTACGA
Found at i:15819540 original size:18 final size:19
Alignment explanation
Indices: 15819500--15819540 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
15819490 AACATAGCCC
*
15819500 CTTT-GGATTTTATTTTTA
1 CTTTGGGATTTTAGTTTTA
*
15819518 ATTTGGGATTTTAGTTTT-
1 CTTTGGGATTTTAGTTTTA
15819536 CTTTG
1 CTTTG
15819541 ATTATAACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.15, C:0.05, G:0.17, T:0.63
Consensus pattern (19 bp):
CTTTGGGATTTTAGTTTTA
Found at i:15821181 original size:23 final size:21
Alignment explanation
Indices: 15821152--15821257 Score: 95
Period size: 23 Copynumber: 4.7 Consensus size: 21
15821142 CTTACCAATT
*
15821152 TAGAGCTTACTGTTTCAGCTCA
1 TAGAGCTTACT-ATTCAGCTCA
* * *
15821174 TTGGAGCTTACCGATTCAGCTTGA
1 -TAGAGCTTA-CTATTCAGC-TCA
15821198 TAGAGCTTACTATTCAGCTCAA
1 TAGAGCTTACTATTCAGCTC-A
*
15821220 TAGAGCTTACCATTTTCAGCTCA
1 TAGAGCTTA-C-TATTCAGCTCA
15821243 GTAGAGCTTACTATT
1 -TAGAGCTTACTATT
15821258 TATTAGCTCG
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.01
22 21 0.31
23 25 0.37
24 21 0.31
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (21 bp):
TAGAGCTTACTATTCAGCTCA
Found at i:15821215 original size:22 final size:23
Alignment explanation
Indices: 15821177--15821257 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 23
15821167 CAGCTCATTG
* *
15821177 GAGCTTACCGATTCAGCTTGATA
1 GAGCTTACCTATTCAGCTTAATA
*
15821200 GAGCTTA-CTATTCAGCTCAATA
1 GAGCTTACCTATTCAGCTTAATA
* * *
15821222 GAGCTTACCATTTTCAGCTCAGTA
1 GAGCTTACC-TATTCAGCTTAATA
15821246 GAGCTTA-CTATT
1 GAGCTTACCTATT
15821258 TATTAGCTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
22 22 0.44
23 9 0.18
24 19 0.38
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (23 bp):
GAGCTTACCTATTCAGCTTAATA
Found at i:15821238 original size:46 final size:45
Alignment explanation
Indices: 15821152--15821257 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 45
15821142 CTTACCAATT
* * * *
15821152 TAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTCAGCT-TG
1 TAGAGCTTACT-ATTCAGCTCAATAGAGCTTACCGATTCAGCTCAG
15821197 ATAGAGCTTACTATTCAGCTCAATAGAGCTTACC-ATTTTCAGCTCAG
1 -TAGAGCTTACTATTCAGCTCAATAGAGCTTACCGA--TTCAGCTCAG
15821244 TAGAGCTTACTATT
1 TAGAGCTTACTATT
15821258 TATTAGCTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
44 1 0.02
45 19 0.36
46 32 0.60
47 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (45 bp):
TAGAGCTTACTATTCAGCTCAATAGAGCTTACCGATTCAGCTCAG
Found at i:15821242 original size:24 final size:24
Alignment explanation
Indices: 15821152--15821258 Score: 91
Period size: 24 Copynumber: 4.6 Consensus size: 24
15821142 CTTACCAATT
*
15821152 TAGAGCTTA-C-TGTTTCAGCTCAT
1 TAGAGCTTACCAT-TTTCAGCTCAA
* **
15821175 TGGAGCTTACCGA--TTCAGCTTGA
1 TAGAGCTTACC-ATTTTCAGCTCAA
*
15821198 TAGAGCTTA-C-TATTCAGCTCAA
1 TAGAGCTTACCATTTTCAGCTCAA
*
15821220 TAGAGCTTACCATTTTCAGCTCAG
1 TAGAGCTTACCATTTTCAGCTCAA
*
15821244 TAGAGCTTACTATTT
1 TAGAGCTTACCATTT
15821259 ATTAGCTCGG
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
22 18 0.27
23 24 0.36
24 25 0.37
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (24 bp):
TAGAGCTTACCATTTTCAGCTCAA
Found at i:15822872 original size:48 final size:48
Alignment explanation
Indices: 15822809--15822904 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
15822799 GATTACGGGT
* *
15822809 TAGGGGTGTTACATTTTTTTGTATCAGAACTAGGTTTAGCCGATTCTA
1 TAGGGGTGTTACATTTTTTTGTATCAGAACCAGGTTTAGCCAATTCTA
*
15822857 TAGGGGTGTTACATTTTTTTGTATCAGAGCCAGGTTTAGCCAATTCTA
1 TAGGGGTGTTACATTTTTTTGTATCAGAACCAGGTTTAGCCAATTCTA
15822905 GGACTAACGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.41
Consensus pattern (48 bp):
TAGGGGTGTTACATTTTTTTGTATCAGAACCAGGTTTAGCCAATTCTA
Found at i:15824897 original size:19 final size:19
Alignment explanation
Indices: 15824873--15824910 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15824863 TGGTATTGAG
* *
15824873 TTAGTATCGGGGACAACAC
1 TTAGTACCGAGGACAACAC
15824892 TTAGTACCGAGGACAACAC
1 TTAGTACCGAGGACAACAC
15824911 CAATAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (19 bp):
TTAGTACCGAGGACAACAC
Found at i:15829393 original size:26 final size:26
Alignment explanation
Indices: 15829364--15829414 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15829354 TTCAGTAGAC
15829364 TCAATAGGTAAATTCTTACTAGATAT
1 TCAATAGGTAAATTCTTACTAGATAT
15829390 TCAATAGGTAAATTCTTACTAGATA
1 TCAATAGGTAAATTCTTACTAGATA
15829415 CTAAATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (26 bp):
TCAATAGGTAAATTCTTACTAGATAT
Found at i:15831917 original size:25 final size:25
Alignment explanation
Indices: 15831889--15831943 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
15831879 TCATCAAAGT
15831889 GCCAAATC-ACAAGCCAAAACAAATG
1 GCCAAATCAACAA-CCAAAACAAATG
** *
15831914 GCCATTTCAACAACCAAAACACATG
1 GCCAAATCAACAACCAAAACAAATG
15831939 GCCAA
1 GCCAA
15831944 CACTAACCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.47, C:0.31, G:0.11, T:0.11
Consensus pattern (25 bp):
GCCAAATCAACAACCAAAACAAATG
Found at i:15833136 original size:51 final size:51
Alignment explanation
Indices: 15833057--15833180 Score: 203
Period size: 51 Copynumber: 2.4 Consensus size: 51
15833047 CTGATCACAT
* * *
15833057 TTATCACTTGTCACTTGTCACTGTTCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
* *
15833108 TTATCACTTATCACTTCTCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
1 TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
15833159 TTATCACTTGTCACTTATCACT
1 TTATCACTTGTCACTTATCACT
15833181 TGTCACTTGT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
Found at i:15833172 original size:7 final size:7
Alignment explanation
Indices: 15833156--15833194 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
15833146 CTAAAGCAAC
*
15833156 CACTTAT
1 CACTTGT
15833163 CACTTGT
1 CACTTGT
*
15833170 CACTTAT
1 CACTTGT
15833177 CACTTGT
1 CACTTGT
15833184 CACTTGT
1 CACTTGT
15833191 CACT
1 CACT
15833195 GATAAGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (7 bp):
CACTTGT
Found at i:15833175 original size:14 final size:14
Alignment explanation
Indices: 15833156--15833194 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
15833146 CTAAAGCAAC
15833156 CACTTATCACTTGT
1 CACTTATCACTTGT
15833170 CACTTATCACTTGT
1 CACTTATCACTTGT
*
15833184 CACTTGTCACT
1 CACTTATCACT
15833195 GATAAGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (14 bp):
CACTTATCACTTGT
Found at i:15833181 original size:65 final size:65
Alignment explanation
Indices: 15833105--15833243 Score: 208
Period size: 65 Copynumber: 2.1 Consensus size: 65
15833095 CTAAAGCTAC
*
15833105 CACTTATCACTTATCACTTCTCACTGATCAGATAAGTGTAGCTAAAG-CAACCACTTATCACTTG
1 CACTTATCACTTATCACTTCTCACTGATAAGATAAGTGTAGCT-AAGCCAACCACTTATCACTTG
15833169 T
65 T
* * * *
15833170 CACTTATCACTTGTCACTTGTCACTGATAAGATAAGTGTAGCTGAGCCTACCACTTATCACTTGT
1 CACTTATCACTTATCACTTCTCACTGATAAGATAAGTGTAGCTAAGCCAACCACTTATCACTTGT
*
15833235 CACTGATCA
1 CACTTATCA
15833244 GAAGTACTCA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 2 0.03
65 65 0.97
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (65 bp):
CACTTATCACTTATCACTTCTCACTGATAAGATAAGTGTAGCTAAGCCAACCACTTATCACTTGT
Found at i:15852142 original size:44 final size:43
Alignment explanation
Indices: 15852092--15852240 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 43
15852082 TGAATTATCG
* * *
15852092 TGTAAGACCGTGTCTGTGACACAGGCATCGAATTGAAATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGAATTG-AATTTACA
* *
15852136 TGTAAGACCATGTCCGGGACATCA-GCATCGTATCTG-ATTT-CA
1 TGTAAGACCATGTCTGGGACA-CAGGCATCGAAT-TGAATTTACA
* * * *
15852178 TATAAGACCCTGTCTGGGACAGAGGCATCGATACTGAA-TTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGA-ATTGAATTTACA
* *
15852221 TGTAAGACCACGTCCGGGAC
1 TGTAAGACCATGTCTGGGAC
15852241 GTTGGCATTA
Statistics
Matches: 84, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.35
43 24 0.29
44 26 0.31
45 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGAATTGAATTTACA
Found at i:15852206 original size:42 final size:42
Alignment explanation
Indices: 15852078--15852240 Score: 143
Period size: 44 Copynumber: 3.8 Consensus size: 42
15852068 CGTTGGTATT
* * *
15852078 GATCTGAATTATCGTGTAAGACCGTGTCTGTGACACAGGCATC
1 GATCTGAATT-TCATGTAAGACCATGTCTGGGACACAGGCATC
* *
15852121 GAAT-TGAAATTTACGTGTAAGACCATGTCCGGGACATCA-GCATC
1 G-ATCTG-AATTT-CATGTAAGACCATGTCTGGGACA-CAGGCATC
* * *
15852165 GTATCTG-ATTTCATATAAGACCCTGTCTGGGACAGAGGCATC
1 G-ATCTGAATTTCATGTAAGACCATGTCTGGGACACAGGCATC
* * *
15852207 GATACTGAATTACATGTAAGACCACGTCCGGGAC
1 GAT-CTGAATTTCATGTAAGACCATGTCTGGGAC
15852241 GTTGGCATTA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
41 3 0.03
42 28 0.29
43 29 0.30
44 34 0.35
45 4 0.04
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (42 bp):
GATCTGAATTTCATGTAAGACCATGTCTGGGACACAGGCATC
Found at i:15855428 original size:20 final size:20
Alignment explanation
Indices: 15855403--15855441 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
15855393 TAACCAAGAT
15855403 AGATGAGCCATATTTTCCAA
1 AGATGAGCCATATTTTCCAA
15855423 AGATGAGCCATATTTTCCA
1 AGATGAGCCATATTTTCCA
15855442 CATGCTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (20 bp):
AGATGAGCCATATTTTCCAA
Found at i:15865520 original size:29 final size:27
Alignment explanation
Indices: 15865440--15865520 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 27
15865430 TTTGAAGTAT
15865440 AATCAAAGTTTCAATGTATAATTACATCA
1 AATCAAAG-TTC-ATGTATAATTACATCA
* * *
15865469 AATTAAAGCTCGTGTATCAAATTACAGTTCA
1 AATCAAAGTTCATGTAT--AATTACA--TCA
15865500 AATCAAAGTTCATGTATAATT
1 AATCAAAGTTCATGTATAATT
15865521 TTAATATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
27 5 0.12
28 2 0.05
29 18 0.43
31 17 0.40
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.35
Consensus pattern (27 bp):
AATCAAAGTTCATGTATAATTACATCA
Found at i:15872543 original size:3 final size:3
Alignment explanation
Indices: 15872482--15872534 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
15872472 TTTGTTAACT
* *
15872482 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
15872527 TTA GTA TT
1 TTA TTA TT
15872535 GGTATTATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:15872615 original size:22 final size:23
Alignment explanation
Indices: 15872568--15872616 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
15872558 ATCTCTATTC
*
15872568 ATATATACTTATGTATTTTCAAAT
1 ATATATACTTATGTATTATC-AAT
15872592 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
15872614 ATA
1 ATA
15872617 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:15881214 original size:58 final size:58
Alignment explanation
Indices: 15881124--15881239 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
15881114 NNNNNNNNNN
15881124 AGAGATTAATCCTAATAAAATTTCAATCCACCACACATTCGTACCTTTCCACTTTTTT
1 AGAGATTAATCCTAATAAAATTTCAATCCACCACACATTCGTACCTTTCCACTTTTTT
15881182 AGAGATTAATCCTAATAAAATTTCAATCCACCACACATTCGTACCTTTCCACTTTTTT
1 AGAGATTAATCCTAATAAAATTTCAATCCACCACACATTCGTACCTTTCCACTTTTTT
15881240 TGCATCATGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (58 bp):
AGAGATTAATCCTAATAAAATTTCAATCCACCACACATTCGTACCTTTCCACTTTTTT
Found at i:15882933 original size:93 final size:93
Alignment explanation
Indices: 15882820--15882991 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
15882810 CGCCCATAAG
* *
15882820 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15882885 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
15882913 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15882978 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
15882992 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:15882988 original size:46 final size:46
Alignment explanation
Indices: 15882813--15882988 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
15882803 TGTAACCCGC
* * *
15882813 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
15882859 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
15882909 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
15882952 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
15882989 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:15890486 original size:93 final size:93
Alignment explanation
Indices: 15890373--15890544 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
15890363 CGCCCATAAG
* *
15890373 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15890438 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
15890466 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
15890531 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
15890545 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:15890541 original size:46 final size:46
Alignment explanation
Indices: 15890366--15890541 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
15890356 TGTAACCCGC
* * *
15890366 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
15890412 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
15890462 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
15890505 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
15890542 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:15891992 original size:16 final size:18
Alignment explanation
Indices: 15891962--15891997 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
15891952 TTTTCAACCT
15891962 AAATTAAACTAAAATTAA
1 AAATTAAACTAAAATTAA
15891980 AAATTAAA-T-AAATTAA
1 AAATTAAACTAAAATTAA
15891996 AA
1 AA
15891998 TAAGTATGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTAAACTAAAATTAA
Found at i:15900591 original size:25 final size:25
Alignment explanation
Indices: 15900563--15900686 Score: 102
Period size: 25 Copynumber: 5.2 Consensus size: 25
15900553 TGATGAATGT
15900563 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
** * *
15900588 GAATG-G--CCTATGTGATGAATG-T
1 GAATGTGTATATATGTGAT-AAGGCC
15900610 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
** * *
15900635 GAATG-G--CCTATGTGATGAATG-T
1 GAATGTGTATATATGTGAT-AAGGCC
15900657 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
15900682 GAATG
1 GAATG
15900687 GCCAATGTGA
Statistics
Matches: 73, Mismatches: 16, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
22 26 0.36
23 8 0.11
24 8 0.11
25 31 0.42
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (25 bp):
GAATGTGTATATATGTGATAAGGCC
Found at i:15900602 original size:22 final size:22
Alignment explanation
Indices: 15900574--15900697 Score: 81
Period size: 22 Copynumber: 5.4 Consensus size: 22
15900564 AATGTGTATA
15900574 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * **
15900596 TATGTGATGAATG-TGAATGTGTATA
1 TATGTGAT-AAGGCCGAATG-G--CC
15900621 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * **
15900643 TATGTGATGAATG-TGAATGTGTATA
1 TATGTGAT-AAGGCCGAATG-G--CC
15900668 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
*
15900690 AATGTGAT
1 TATGTGAT
15900698 GAATGTGAGC
Statistics
Matches: 75, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
22 33 0.44
23 8 0.11
24 8 0.11
25 26 0.35
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.31
Consensus pattern (22 bp):
TATGTGATAAGGCCGAATGGCC
Found at i:15900603 original size:47 final size:47
Alignment explanation
Indices: 15900550--15901064 Score: 724
Period size: 47 Copynumber: 11.0 Consensus size: 47
15900540 TTAGGATTTT
** * *
15900550 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * *
15900597 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
15900644 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
15900691 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
15900738 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
15900785 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
15900832 ATGTGGTGAATATGAACATGCATATATGTGATGAGGCCGAATGACCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
15900879 ATGTGATGAATGTGAACATGCATAAATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
15900926 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
15900973 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
15901020 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
15901065 TAGTGTGAAA
Statistics
Matches: 426, Mismatches: 42, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 426 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:15900840 original size:25 final size:25
Alignment explanation
Indices: 15900765--15900840 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
15900755 ATGTATATAT
15900765 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
15900790 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
15900812 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
15900837 GTGA
1 GTGA
15900841 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:15900956 original size:25 final size:25
Alignment explanation
Indices: 15900926--15901004 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
15900916 CGAATGGCCA
15900926 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAGCATGCATAT
* *
15900951 ATGTGAT-AAGGCTGA--ATGGC-CA-
1 ATGTGATGAATG-TGAGCAT-GCATAT
15900973 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAGCATGCATAT
*
15900998 GTGTGAT
1 ATGTGAT
15901005 AAGGCCGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 10 0.24
23 8 0.19
24 8 0.19
25 16 0.38
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAGCATGCATAT
Found at i:15900979 original size:22 final size:22
Alignment explanation
Indices: 15900903--15900979 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
15900893 AACATGCATA
* *
15900903 AATGTGATGAGGCCGAATGGCC
1 AATGTGATAAGGCTGAATGGCC
* *
15900925 AATGTGATGAATG-TGAGCAT-GCAT
1 AATGTGAT-AAGGCTGA--ATGGC-C
15900949 ATATGTGATAAGGCTGAATGGCC
1 A-ATGTGATAAGGCTGAATGGCC
15900972 AATGTGAT
1 AATGTGAT
15900980 GAATGTGAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 17 0.40
23 7 0.17
24 8 0.19
25 10 0.24
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (22 bp):
AATGTGATAAGGCTGAATGGCC
Found at i:15901277 original size:37 final size:37
Alignment explanation
Indices: 15901227--15901372 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
15901217 GGAAATATAT
* * *
15901227 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
15901264 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
15901301 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
15901338 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
15901373 CGTCTGAGCT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:15902875 original size:20 final size:20
Alignment explanation
Indices: 15902850--15902897 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
15902840 CTGCGGGCAT
15902850 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
15902870 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
15902890 GGGCGTGT
1 GGGCGTGT
15902898 GTGATCACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.12
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAC
Found at i:15915393 original size:43 final size:42
Alignment explanation
Indices: 15915332--15915467 Score: 132
Period size: 42 Copynumber: 3.2 Consensus size: 42
15915322 CAATCCAACT
* *
15915332 TCCCAGAC-GTGGTCTTACATGTAATCAAACATCGATGCCACTG
1 TCCCAGACAG-GGTCTTACACGTAATCAAA-ATCGATGCCAATG
* *
15915375 TCCCAGACAGGGTCTTACACGAAAT-AAAATATGATGCCAATG
1 TCCCAGACAGGGTCTTACACGTAATCAAAAT-CGATGCCAATG
* * * *
15915417 TCTCAAACATGGTCTTACACGTAAATCATAAGTCGATGCCAATG
1 TCCCAGACAGGGTCTTACACGT-AATCA-AAATCGATGCCAATG
*
15915461 ACCCAGA
1 TCCCAGA
15915468 TGTTGTCTAA
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
41 2 0.03
42 30 0.40
43 24 0.32
44 16 0.21
45 3 0.04
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATCAAAATCGATGCCAATG
Found at i:15915431 original size:42 final size:43
Alignment explanation
Indices: 15915332--15915465 Score: 119
Period size: 43 Copynumber: 3.1 Consensus size: 43
15915322 CAATCCAACT
* * * * * *
15915332 TCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTG
1 TCCCAAACATGGTCTTACACGAAATAAAACATCGATGCCAATG
* * *
15915375 TCCCAGACAGGGTCTTACACGAAATAAAATAT-GATGCCAATG
1 TCCCAAACATGGTCTTACACGAAATAAAACATCGATGCCAATG
* * *
15915417 TCTCAAACATGGTCTTACACGTAAATCATAA-GTCGATGCCAATG
1 TCCCAAACATGGTCTTACACG-AAAT-AAAACATCGATGCCAATG
*
15915461 ACCCA
1 TCCCA
15915466 GATGTTGTCT
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 27 0.36
43 31 0.42
44 16 0.22
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACACGAAATAAAACATCGATGCCAATG
Found at i:15916026 original size:27 final size:28
Alignment explanation
Indices: 15915978--15916031 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
15915968 ATTACATTTA
* *
15915978 TTTCACATTTAGTCCCTCAATTTCTCAT
1 TTTCACATTTAGTCCCTAAATTACTCAT
15916006 TTTCACAATTTAG-CCC-AAATTACTCA
1 TTTCAC-ATTTAGTCCCTAAATTACTCA
15916032 AATTCATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.35
28 9 0.39
29 6 0.26
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.41
Consensus pattern (28 bp):
TTTCACATTTAGTCCCTAAATTACTCAT
Found at i:15917388 original size:16 final size:17
Alignment explanation
Indices: 15917367--15917404 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
15917357 ATGAATCGGC
15917367 AAAAGCCA-AAATGCCG
1 AAAAGCCAGAAATGCCG
15917383 AAAAG-CAGAAATGCCG
1 AAAAGCCAGAAATGCCG
15917399 AAAAGC
1 AAAAGC
15917405 TGAAAGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.53, C:0.21, G:0.21, T:0.05
Consensus pattern (17 bp):
AAAAGCCAGAAATGCCG
Found at i:15917409 original size:16 final size:16
Alignment explanation
Indices: 15917375--15917409 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
15917365 GCAAAAGCCA
15917375 AAATGCCGAAAAGCAG
1 AAATGCCGAAAAGCAG
*
15917391 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCAG
15917407 AAA
1 AAA
15917410 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.23, T:0.09
Consensus pattern (16 bp):
AAATGCCGAAAAGCAG
Found at i:15922244 original size:30 final size:30
Alignment explanation
Indices: 15922187--15922244 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15922177 CATGACCATG
* * *
15922187 ACACATGGGCGTGTGGCTTGCCTGTGTGTC
1 ACACACGGGCGTGTGGCTTACCCGTGTGTC
*
15922217 ACACACGGGCGTGTGGTTTACCCGTGTG
1 ACACACGGGCGTGTGGCTTACCCGTGTG
15922245 AAAATGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.36, T:0.28
Consensus pattern (30 bp):
ACACACGGGCGTGTGGCTTACCCGTGTGTC
Found at i:15924094 original size:6 final size:6
Alignment explanation
Indices: 15924072--15924126 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
15924062 ATAAGTCTTC
* **
15924072 AAAAAT AAATA- AAAAAT AAAAAT AAAAAT AAAAAT AGTAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
15924118 -AAAAT AAAA
1 AAAAAT AAAA
15924127 GGAGTCAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 12 0.29
6 29 0.71
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:15924098 original size:12 final size:12
Alignment explanation
Indices: 15924072--15924126 Score: 62
Period size: 11 Copynumber: 4.8 Consensus size: 12
15924062 ATAAGTCTTC
*
15924072 AAAAATAAATA-
1 AAAAATAAAAAT
15924083 AAAAATAAAAAT
1 AAAAATAAAAAT
15924095 AAAAATAAAAAT
1 AAAAATAAAAAT
**
15924107 AGTAAT-AAAAT
1 AAAAATAAAAAT
15924118 -AAAATAAAA
1 AAAAATAAAA
15924127 GGAGTCAAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 3 0.08
11 18 0.49
12 16 0.43
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:15924104 original size:29 final size:28
Alignment explanation
Indices: 15924072--15924126 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
15924062 ATAAGTCTTC
15924072 AAAAATAAATAA-AAAATAAAAATAAAAAT
1 AAAAAT-AATAATAAAAT-AAAATAAAAAT
*
15924101 AAAAATAGTAATAAAATAAAATAAAA
1 AAAAATAATAATAAAATAAAATAAAA
15924127 GGAGTCAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (28 bp):
AAAAATAATAATAAAATAAAATAAAAAT
Found at i:15929383 original size:40 final size:41
Alignment explanation
Indices: 15929326--15929583 Score: 198
Period size: 40 Copynumber: 6.5 Consensus size: 41
15929316 CGGATAATAA
*
15929326 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAGTGACTATA-T
* * * *
15929366 CTGGGCTAAGTCTCGAAGGCAATTGT-ATGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAGTGACTATAT
* *
15929406 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGCT-ACAATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAG-TGACTATAT
* * * * *
15929446 CCGGGTTAAGTCCCGAAGGCATTTGCGC-GAGCT-ACAATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAG-TGACTATAT
* * * * *
15929486 CCGGGTTAAGTCCCGAAGGCATTTGTG-AGAGTTATTATGAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAGTGACTAT-AT
* *
15929527 -CGGGCTAAGTCCCGAAGGCATTTGGGC-GAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAGTGA-CTATAT
**
15929566 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
15929584 TACTTGGTTG
Statistics
Matches: 186, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
39 19 0.10
40 164 0.88
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCTGAGTGACTATAT
Done.