Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 57 of 253
Found at i:15929534 original size:120 final size:120
Alignment explanation
Indices: 15929321--15929556 Score: 309
Period size: 120 Copynumber: 2.0 Consensus size: 120
15929311 ATATTCGGAT
* * * * *
15929321 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGTCTCGAAGGC
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
*
15929386 AATTGTATGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTAC
66 AATTGTATGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATTGGGCGAGCTAC
* *
15929441 AATAACCGGGTTAAGTCCCGAAGGCATTTGCGCGAGCT-AC-AATAACCGGGTTAAGTCCCGAAG
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAAT-ACCGGGCTAAGTCCCGAAG
* * *
15929504 GCATTTGTGA-GAGTTATTATGAT-CGGGCTAAGTCCCGAAGGCATTTGGGCGAG
64 GCAATTGT-ATGAGTTACTAT-ATCCGGGCTAAGTCCCGAAGGCAATTGGGCGAG
15929557 TAGCTATATC
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
119 3 0.03
120 94 0.93
121 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (120 bp):
AATAACCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
AATTGTATGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATTGGGCGAGCTAC
Found at i:15929547 original size:80 final size:79
Alignment explanation
Indices: 15929321--15929556 Score: 258
Period size: 80 Copynumber: 2.9 Consensus size: 79
15929311 ATATTCGGAT
* * *
15929321 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCTCGAAGG
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC-GGGCTAAGTCCCGAAGG
* *** *
15929385 CAATTGTATGAGTTAC
64 CATTTGCGCGAGCTAC
* * * * * * *
15929401 TATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACAATAACCGGGTTAAGTCCCGAAGGC
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCGGGCTAAGTCCCGAAGGC
15929466 ATTTGCGCGAGCTAC
65 ATTTGCGCGAGCTAC
* * *
15929481 AATAACCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTATTATGATCGGGCTAAGTCCCGAAGGC
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCGGGCTAAGTCCCGAAGGC
*
15929546 ATTTGGGCGAG
65 ATTTGCGCGAG
15929557 TAGCTATATC
Statistics
Matches: 127, Mismatches: 27, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
80 125 0.98
81 1 0.01
82 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCGGGCTAAGTCCCGAAGGCA
TTTGCGCGAGCTAC
Found at i:15947284 original size:79 final size:81
Alignment explanation
Indices: 15947148--15947330 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
15947138 TCGAATGATG
* *
15947148 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
15947212 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
15947227 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
15947289 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
15947307 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
15947331 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:15947346 original size:40 final size:40
Alignment explanation
Indices: 15947149--15947332 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
15947139 CGAATGATGT
* * * *
15947149 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
15947189 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
15947229 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15947267 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15947308 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
15947333 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:15947354 original size:79 final size:79
Alignment explanation
Indices: 15947201--15947365 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
15947191 GGACTAAGAT
* **
15947201 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
15947266 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
15947280 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
15947343 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
15947359 CCGAAGG
1 CCGAAGG
15947366 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:15955457 original size:79 final size:81
Alignment explanation
Indices: 15955321--15955503 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
15955311 TCGAATGATG
* *
15955321 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
15955385 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
15955400 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
15955462 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
15955480 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
15955504 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:15955519 original size:40 final size:40
Alignment explanation
Indices: 15955322--15955505 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
15955312 CGAATGATGT
* * * *
15955322 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
15955362 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
15955402 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15955440 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15955481 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
15955506 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:15955527 original size:79 final size:79
Alignment explanation
Indices: 15955374--15955538 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
15955364 GGACTAAGAT
* **
15955374 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
15955439 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
15955453 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
15955516 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
15955532 CCGAAGG
1 CCGAAGG
15955539 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:15957355 original size:20 final size:20
Alignment explanation
Indices: 15957332--15957385 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
15957322 CGTAACATAA
15957332 GCACCGAAGTGCAAACAAAG
1 GCACCGAAGTGCAAACAAAG
*
15957352 GCACC-AGAGTGCAAACAGAG
1 GCACCGA-AGTGCAAACAAAG
15957372 GCACCGAAGTGCAA
1 GCACCGAAGTGCAA
15957386 TCCCATACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.41, C:0.26, G:0.28, T:0.06
Consensus pattern (20 bp):
GCACCGAAGTGCAAACAAAG
Found at i:15958873 original size:27 final size:27
Alignment explanation
Indices: 15958842--15958949 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 27
15958832 AATCTCATAT
* * *
15958842 CTATAGGCTAGTATTACTGAAATATCC
1 CTATAGGGTAGAATTACTGAAATACCC
* *
15958869 CTATAGGGTAGAATTACTAAAATGCCC
1 CTATAGGGTAGAATTACTGAAATACCC
* * * *
15958896 CTATAAGATAGAATTATTGAAATGCCC
1 CTATAGGGTAGAATTACTGAAATACCC
* *
15958923 CTGTAGGGTAAAATTACTGAAATACCC
1 CTATAGGGTAGAATTACTGAAATACCC
15958950 TTGTTTTACA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (27 bp):
CTATAGGGTAGAATTACTGAAATACCC
Found at i:15958962 original size:27 final size:27
Alignment explanation
Indices: 15958931--15959222 Score: 180
Period size: 27 Copynumber: 10.8 Consensus size: 27
15958921 CCCTGTAGGG
*
15958931 TAAAATTACTGAAATACCCTTGTTTTA
1 TAAAATTACTGAAATACCCTTGATTTA
* * *
15958958 CAAAATTACTG-AATACCTTTGGTTTA
1 TAAAATTACTGAAATACCCTTGATTTA
* **
15958984 CAAAATTACCAAAATACCCTTGA-TTA
1 TAAAATTACTGAAATACCCTTGATTTA
* ** * *
15959010 GAAAAATTACCAAAATACCCCTGATTTG
1 -TAAAATTACTGAAATACCCTTGATTTA
* * * *
15959038 TGAAATTATTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTTGATTTA
** *
15959065 TAAAATTACCAAAATA-CCTCTGATTTG
1 TAAAATTACTGAAATACCCT-TGATTTA
* * *
15959092 GAAAATTACCGAAATACCCTTGATTTG
1 TAAAATTACTGAAATACCCTTGATTTA
* * *
15959119 GAAAATTA-TAGAAATACCCCTAATTTA
1 TAAAATTACT-GAAATACCCTTGATTTA
* *** *
15959146 AAAAATTAAAAAAATACCATTGACTTT-
1 TAAAATTACTGAAATACCCTTGA-TTTA
* *
15959173 TAAAAATTACTGAAATACCATTGGTTTA
1 T-AAAATTACTGAAATACCCTTGATTTA
* * * *
15959201 TAGATTTACTAAAACACCCTTG
1 TAAAATTACTGAAATACCCTTG
15959223 TAGGGTGAAA
Statistics
Matches: 211, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 28 0.13
27 156 0.74
28 27 0.13
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTTGATTTA
Found at i:15959053 original size:54 final size:54
Alignment explanation
Indices: 15958932--15959191 Score: 204
Period size: 54 Copynumber: 4.8 Consensus size: 54
15958922 CCTGTAGGGT
* * ** ** * **
15958932 AAAATTACTGAAATACCCTTG-TTTTACAAAATTA-CTGAATACCTTTGGTTTAC
1 AAAATTACCGAAATACCCTTGATTTGA-AAAATTACCAAAATACCCCTGATTTGG
* *
15958985 AAAATTACCAAAATACCCTTGATTAGAAAAATTACCAAAATACCCCTGATTTGTG
1 AAAATTACCGAAATACCCTTGATTTGAAAAATTACCAAAATACCCCTGATTTG-G
** * * *
15959040 -AAATTATTGAAATACCCTCGATTTGTAAAATTACCAAAATACCTCTGATTTGG
1 AAAATTACCGAAATACCCTTGATTTGAAAAATTACCAAAATACCCCTGATTTGG
* * * **
15959093 AAAATTACCGAAATACCCTTGATTTGGAAAATTA-TAGAAATACCCCTAATTTAA
1 AAAATTACCGAAATACCCTTGATTTGAAAAATTACCA-AAATACCCCTGATTTGG
*** * * **
15959147 AAAATTAAAAAAATACCATTGACTTTTAAAAATTACTGAAATACC
1 AAAATTACCGAAATACCCTTGA-TTTGAAAAATTACCAAAATACC
15959192 ATTGGTTTAT
Statistics
Matches: 166, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
53 28 0.17
54 120 0.72
55 17 0.10
56 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.32
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTTGATTTGAAAAATTACCAAAATACCCCTGATTTGG
Found at i:15959151 original size:81 final size:80
Alignment explanation
Indices: 15958932--15959191 Score: 242
Period size: 81 Copynumber: 3.2 Consensus size: 80
15958922 CCTGTAGGGT
* * ** ** * *
15958932 AAAATTACTGAAATACCCTTGTTTTACAAAATTACTG-AATACCTTTGGTTTACAAAATTACCAA
1 AAAATTACCGAAATACCCTTGATTTGGAAAATTA-TGAAATACCCCTGATTTAAAAAATTACCAA
*
15958996 AATACC-CTTGATTAGA
65 AATACCTC-TGATTTGA
* * **
15959012 AAAATTACCAAAATACCCCTGATTTGTG-AAATTATTGAAATA-CCCTCGATTTGTAAAATTACC
1 AAAATTACCGAAATACCCTTGATTTG-GAAAATTA-TGAAATACCCCT-GATTTAAAAAATTACC
*
15959075 AAAATACCTCTGATTTGG
63 AAAATACCTCTGATTTGA
* **
15959093 AAAATTACCGAAATACCCTTGATTTGGAAAATTATAGAAATACCCCTAATTTAAAAAATTAAAAA
1 AAAATTACCGAAATACCCTTGATTTGGAAAATTAT-GAAATACCCCTGATTTAAAAAATTACCAA
*
15959158 AATACCAT-TGACTTTTA
65 AATACC-TCTGA-TTTGA
*
15959175 AAAATTACTGAAATACC
1 AAAATTACCGAAATACC
15959192 ATTGGTTTAT
Statistics
Matches: 147, Mismatches: 24, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
80 33 0.22
81 89 0.61
82 25 0.17
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.32
Consensus pattern (80 bp):
AAAATTACCGAAATACCCTTGATTTGGAAAATTATGAAATACCCCTGATTTAAAAAATTACCAAA
ATACCTCTGATTTGA
Found at i:15959715 original size:25 final size:25
Alignment explanation
Indices: 15959642--15959709 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
15959632 CCAATTATTC
*
15959642 TGTTATCGATGGCTTTGTACCGATA
1 TGTTATCGATGGCTTTATACCGATA
* * * *
15959667 TGATATTGATGGCTATATACCGATT
1 TGTTATCGATGGCTTTATACCGATA
15959692 TGTTATCGATGGCTTTAT
1 TGTTATCGATGGCTTTAT
15959710 GTCGATCGTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (25 bp):
TGTTATCGATGGCTTTATACCGATA
Found at i:15962492 original size:27 final size:27
Alignment explanation
Indices: 15962462--15962542 Score: 135
Period size: 27 Copynumber: 3.0 Consensus size: 27
15962452 AATCTCATAT
* *
15962462 CTGTAGGCTAGTATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
15962489 CTGTAGGATAGAATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
*
15962516 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
15962543 TTGGTTTACA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (27 bp):
CTGTAGGATAGAATTACTGAAATGCCC
Found at i:15962557 original size:27 final size:26
Alignment explanation
Indices: 15962527--15962585 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
15962517 TGTAGGGTAG
* *
15962527 AATTACTGAAATGCCCTTGGTTTACAA
1 AATTACTG-AATACCCTTAGTTTACAA
* *
15962554 AATTATTGAATACCTTTAGTTTACAA
1 AATTACTGAATACCCTTAGTTTACAA
15962580 AATTAC
1 AATTAC
15962586 AAAAATACCC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (26 bp):
AATTACTGAATACCCTTAGTTTACAA
Found at i:15962608 original size:27 final size:27
Alignment explanation
Indices: 15962578--15962701 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
15962568 TTTAGTTTAC
* *
15962578 AAAATTACAAAAATA-CCCTCAATTAGA
1 AAAATTACAAAAATACCCCT-AATTTGT
*
15962605 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACAAAAATACCCCTAATTTGT
*
15962632 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACAAAAATACCCCTAATTTGT
* * *
15962659 GAAATTATC-GAAATACCCTTAATTTGT
1 AAAATTA-CAAAAATACCCCTAATTTGT
*
15962686 AAAATTACAGAAATAC
1 AAAATTACAAAAATAC
15962702 TTACAAAATT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.93
28 5 0.06
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.28
Consensus pattern (27 bp):
AAAATTACAAAAATACCCCTAATTTGT
Found at i:15962638 original size:54 final size:54
Alignment explanation
Indices: 15962578--15962701 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
15962568 TTTAGTTTAC
15962578 AAAATTACAAAAATA-CCCTCAATTAGAAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACAAAAATACCCCT-AATTAGAAAAATTACCAAAATACCCCTAATTTGT
* * ** * * *
15962632 AAAATTACCAAAATACCCCTAATTTGTGAAATTATCGAAATACCCTTAATTTGT
1 AAAATTACAAAAATACCCCTAATTAGAAAAATTACCAAAATACCCCTAATTTGT
*
15962686 AAAATTACAGAAATAC
1 AAAATTACAAAAATAC
15962702 TTACAAAATT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 56 0.93
55 4 0.07
ACGTcount: A:0.48, C:0.19, G:0.06, T:0.28
Consensus pattern (54 bp):
AAAATTACAAAAATACCCCTAATTAGAAAAATTACCAAAATACCCCTAATTTGT
Found at i:15964396 original size:49 final size:49
Alignment explanation
Indices: 15964324--15964507 Score: 242
Period size: 49 Copynumber: 3.7 Consensus size: 49
15964314 TGAGGTCACG
*
15964324 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
15964373 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* *
15964424 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
15964473 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
15964508 AATAGCTTCG
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 73 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:15964492 original size:100 final size:100
Alignment explanation
Indices: 15964319--15964506 Score: 349
Period size: 100 Copynumber: 1.9 Consensus size: 100
15964309 TATTGTGAGG
* *
15964319 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
15964384 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
*
15964419 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
15964484 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
15964507 AAATAGCTTC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:15965884 original size:25 final size:25
Alignment explanation
Indices: 15965848--15965998 Score: 162
Period size: 25 Copynumber: 6.0 Consensus size: 25
15965838 ATATGATATT
15965848 GATGGCTATGTGCCGATCTGTTATC
1 GATGGCTATGTGCCGATCTGTTATC
* * * *
15965873 GATGGCTTTGTGCCGATATGATATT
1 GATGGCTATGTGCCGATCTGTTATC
15965898 GATGGCTATGTGCCGATCTGTTATC
1 GATGGCTATGTGCCGATCTGTTATC
* * * *
15965923 GATGGCTTTGTACTGATATGATT-T-
1 GATGGCTATGTGCCGATCTG-TTATC
*
15965947 GATGGCTATGTGTCGATCTGTTATC
1 GATGGCTATGTGCCGATCTGTTATC
* * *
15965972 GATGGCTTTGTGCTGATCGTATTATC
1 GATGGCTATGTGCCGATC-TGTTATC
15965998 G
1 G
15965999 TAATAATGGC
Statistics
Matches: 101, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
23 2 0.02
24 16 0.16
25 74 0.73
26 9 0.09
ACGTcount: A:0.17, C:0.15, G:0.28, T:0.40
Consensus pattern (25 bp):
GATGGCTATGTGCCGATCTGTTATC
Found at i:15965912 original size:50 final size:50
Alignment explanation
Indices: 15965837--15965984 Score: 262
Period size: 50 Copynumber: 3.0 Consensus size: 50
15965827 AGGTGTTACA
15965837 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
1 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
* *
15965887 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTACT
1 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
*
15965937 GATATGAT-TTGATGGCTATGTGTCGATCTGTTATCGATGGCTTTGTGC
1 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGC
15965985 TGATCGTATT
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 38 0.40
50 56 0.60
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.40
Consensus pattern (50 bp):
GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
Found at i:15972192 original size:296 final size:297
Alignment explanation
Indices: 15971657--15972250 Score: 1064
Period size: 296 Copynumber: 2.0 Consensus size: 297
15971647 CCAAATACTT
*
15971657 ATAAATAATCAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAATTACCCTAAACTTTT
1 ATAAATAATCAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAATTACCCTAAAATTTT
* *
15971722 TCATTTTATTCAATTTAGTCCCTAAAATCAAAATAAGCTTAATTTCACAATTAATCCCTAATCCA
66 TCATTTTATTCAATTTAGTCCCTAAAATCAAAACAAGCTTAATTTCAAAATTAATCCCTAATCCA
* *
15971787 TATTGCTGAATTTATTTTCATCAAAATCATCCCTTAAATTCTAAAATTTCGCAAGAAAACCAATC
131 TATTGCTGAATTTATTTACATCAAAATCATCCATTAAATTCTAAAATTTCGCAAGAAAACCAATC
15971852 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
196 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
*
15971917 GTTCAAATCCATCATCAAGCTTCAAGCTCAAATATAA
261 GTTCAAATACATCATCAAGCTTCAAGCTCAAATATAA
* *
15971954 ATAAATAATCAATTTAATGCTTATGACTTCTTTATTGACATTTTCCATAATTACCCTAAAATTTT
1 ATAAATAATCAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAATTACCCTAAAATTTT
*
15972019 TCATTTTATTCAATTTAGTCCCTAAAATCGAAACAAGCTTAATTTCAAAATT-ATCCCTAATCCA
66 TCATTTTATTCAATTTAGTCCCTAAAATCAAAACAAGCTTAATTTCAAAATTAATCCCTAATCCA
** *
15972083 TATTGCTGAATTTATTTACATCCTAATCATCCATTAAATTCTAAAATTTTGCAAGAAAACCAATC
131 TATTGCTGAATTTATTTACATCAAAATCATCCATTAAATTCTAAAATTTCGCAAGAAAACCAATC
15972148 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
196 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
*
15972213 GTTCAAATACATCATCAATCTTCAAGCTCAAATATAA
261 GTTCAAATACATCATCAAGCTTCAAGCTCAAATATAA
15972250 A
1 A
15972251 CTTCAAGAAA
Statistics
Matches: 284, Mismatches: 13, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
296 173 0.61
297 111 0.39
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.37
Consensus pattern (297 bp):
ATAAATAATCAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAATTACCCTAAAATTTT
TCATTTTATTCAATTTAGTCCCTAAAATCAAAACAAGCTTAATTTCAAAATTAATCCCTAATCCA
TATTGCTGAATTTATTTACATCAAAATCATCCATTAAATTCTAAAATTTCGCAAGAAAACCAATC
AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
GTTCAAATACATCATCAAGCTTCAAGCTCAAATATAA
Found at i:15975749 original size:28 final size:28
Alignment explanation
Indices: 15975657--15975783 Score: 120
Period size: 28 Copynumber: 4.7 Consensus size: 28
15975647 GAATTTTCCA
* * *
15975657 AAAGGCATCCTTTTAACAAAGATAGCCAC
1 AAAGGCTTCC-TTTAACAGAGATTGCCAC
* * *
15975686 AAAGGATTCCTTTAAC--AGA---CTAG
1 AAAGGCTTCCTTTAACAGAGATTGCCAC
*
15975709 AAAGGCTTCCTTTAATAGAGATTGCCAC
1 AAAGGCTTCCTTTAACAGAGATTGCCAC
* *
15975737 AAAGGCTTCCTTTAACATAGATTGCCAT
1 AAAGGCTTCCTTTAACAGAGATTGCCAC
*
15975765 AAAGGTTTCCTTTAACAGA
1 AAAGGCTTCCTTTAACAGA
15975784 TATCACCACA
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
23 16 0.20
25 3 0.04
26 3 0.04
28 50 0.62
29 8 0.10
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (28 bp):
AAAGGCTTCCTTTAACAGAGATTGCCAC
Found at i:15977034 original size:15 final size:15
Alignment explanation
Indices: 15977014--15977043 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15977004 ATTATGAAAG
15977014 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
15977029 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
15977044 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:15979211 original size:22 final size:21
Alignment explanation
Indices: 15979175--15979215 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
15979165 CTCTTAACAC
*
15979175 AGGGACACACGCCCGTGTGGG
1 AGGGACACACACCCGTGTGGG
15979196 AGGGACAACACACCCGTGTG
1 AGGGAC-ACACACCCGTGTG
15979216 ACATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (21 bp):
AGGGACACACACCCGTGTGGG
Found at i:15992637 original size:53 final size:53
Alignment explanation
Indices: 15992599--15992787 Score: 162
Period size: 55 Copynumber: 3.5 Consensus size: 53
15992589 CTTTCCATTT
* *
15992599 CTTGACATGGTCTTACGTGGTATCCTTGCCTTATAAACTCACCATTGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATAAACTCACCATTGCCATGC
* * ** * * * *
15992652 CTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATA--AACTCACCATTGCCATGC
* *** * * * *
15992707 CTAGACATGGTCTTACATGATTTCCTTGCCTTGTAAAAATTACCAATGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTAT-AAACTCACCATTGCCATGC
* * *
15992761 CTTGGCATGGTCTTACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGGATCCTT
15992788 AAACCCTAAT
Statistics
Matches: 107, Mismatches: 26, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
53 31 0.29
54 36 0.34
55 39 0.36
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGGGATCCTTGCCTTATAAACTCACCATTGCCATGC
Found at i:15995453 original size:24 final size:24
Alignment explanation
Indices: 15995420--15995473 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
15995410 AAGGCTATCA
15995420 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
15995444 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
15995468 GGAGAA
1 GGAGAA
15995474 CGGTGTTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:15996950 original size:26 final size:26
Alignment explanation
Indices: 15996843--15996953 Score: 159
Period size: 27 Copynumber: 4.2 Consensus size: 26
15996833 AGGAAGCGTC
* *
15996843 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
15996870 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
15996897 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
15996924 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
15996950 CTGG
1 CTGG
15996954 CTGCCATGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
26 16 0.21
27 60 0.77
28 2 0.03
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:15999974 original size:13 final size:13
Alignment explanation
Indices: 15999956--15999981 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15999946 ATATTATAAT
15999956 TATTTTATGTTAA
1 TATTTTATGTTAA
15999969 TATTTTATGTTAA
1 TATTTTATGTTAA
15999982 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:16001607 original size:40 final size:40
Alignment explanation
Indices: 16001552--16001672 Score: 215
Period size: 40 Copynumber: 3.0 Consensus size: 40
16001542 TTGTGCTAGC
16001552 TATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
1 TATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
*
16001592 TATTATAACCGGGTTAAGTTCCGAAGGCATTCGTGCGGGT
1 TATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
* *
16001632 TATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 TATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
16001672 T
1 T
16001673 TTTACATCTG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
TATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGT
Found at i:16001696 original size:40 final size:40
Alignment explanation
Indices: 16001567--16001696 Score: 125
Period size: 40 Copynumber: 3.2 Consensus size: 40
16001557 TAACCGGGTT
* * ****
16001567 AAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTT
1 AAGTTCCGAAGGCATTCGTGCGGGTTATTACAACCGAACC
* ** *
16001607 AAGTTCCGAAGGCATTCGTGCGGGTTATTATAACCGGGCT
1 AAGTTCCGAAGGCATTCGTGCGGGTTATTACAACCGAACC
* * * * *
16001647 AAGTCCCGAAGGCATTCGTGCTGGTTTTTACATCTGAACC
1 AAGTTCCGAAGGCATTCGTGCGGGTTATTACAACCGAACC
16001687 AAGTTCCGAA
1 AAGTTCCGAA
16001697 AGTAGTCATG
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
AAGTTCCGAAGGCATTCGTGCGGGTTATTACAACCGAACC
Found at i:16008300 original size:13 final size:13
Alignment explanation
Indices: 16008282--16008307 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16008272 ATATTATAAT
16008282 TATTTTATGTTAA
1 TATTTTATGTTAA
16008295 TATTTTATGTTAA
1 TATTTTATGTTAA
16008308 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:16009892 original size:40 final size:40
Alignment explanation
Indices: 16009848--16009982 Score: 193
Period size: 40 Copynumber: 3.4 Consensus size: 40
16009838 ACTATGATCT
* *
16009848 GAAGGCAATT-GTGCTAGCTATTATAGCCGGGTTAAGTCCC
1 GAAGGC-ATTCGTGCTAGTTATTATAACCGGGTTAAGTCCC
16009888 GAAGGCATTCGTGC-AGGTTATTATAACCGGGTTAAGTCCC
1 GAAGGCATTCGTGCTA-GTTATTATAACCGGGTTAAGTCCC
** *
16009928 GAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCC
1 GAAGGCATTCGTGCTAGTTATTATAACCGGGTTAAGTCCC
16009968 GAAGGCATTCGTGCT
1 GAAGGCATTCGTGCT
16009983 GGTTGTTACA
Statistics
Matches: 87, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
39 4 0.05
40 83 0.95
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GAAGGCATTCGTGCTAGTTATTATAACCGGGTTAAGTCCC
Found at i:16014356 original size:13 final size:13
Alignment explanation
Indices: 16014334--16014366 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
16014324 AAGGGTTTGT
16014334 TTAT-TAAACTAA
1 TTATCTAAACTAA
16014346 TTATCTAAACTAA
1 TTATCTAAACTAA
*
16014359 TTAACTAA
1 TTATCTAA
16014367 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:16017283 original size:12 final size:12
Alignment explanation
Indices: 16017263--16017296 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
16017253 TATGTCCTTA
16017263 AAACA-AAAAAT
1 AAACATAAAAAT
16017274 AAACATAAAAAT
1 AAACATAAAAAT
*
16017286 AAAAATAAAAA
1 AAACATAAAAA
16017297 AATAAGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAACATAAAAAT
Found at i:16026022 original size:48 final size:50
Alignment explanation
Indices: 16025910--16026039 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 50
16025900 CGAGGCTAAC
* * *
16025910 GCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CACTCACATATATGTGCCAAT
* * *
16025960 GCCATGTCCTAGACATGGTCTTACATTGACAC-CTC-TATATGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACACTCACATATATGTGCCAAT
16026008 GCCATGTCCCAGACATGGTCTTACACTGACAC
1 GCCATGTCCCAGACATGGTCTTACACTGACAC
16026040 ATCTCGTAGC
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
48 41 0.58
49 2 0.03
50 27 0.38
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACACTCACATATATGTGCCAAT
Found at i:16026105 original size:46 final size:44
Alignment explanation
Indices: 16025954--16026124 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 44
16025944 ACATATCTGT
* * * *
16025954 GCCGATGCCATGTCCTAGACATGGTCTTACATTGACACCTCTATATGT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATC---ACGTA
* *
16026002 GCCAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCACGTA
* *
16026048 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCACG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCACGTA
16026093 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
16026125 AGCTCTCGTC
Statistics
Matches: 108, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
44 12 0.11
45 17 0.16
46 42 0.39
48 37 0.34
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCACGTA
Found at i:16026147 original size:46 final size:45
Alignment explanation
Indices: 16026010--16026218 Score: 169
Period size: 46 Copynumber: 4.4 Consensus size: 45
16026000 GTGCCAATGC
*
16026010 CATGTCCCAGACATGGTCTTACACT-GACACATCTCGT--A-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTC-TCTC-TCAATGCTGATG
* * * * *
16026055 CATGTCCCAGACATGTCTTACACTGGCT-TACATCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-C-TCTCAATGCTGATG
*
16026101 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGATGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCTGATG
*
16026147 CCATGTCCCAGGCATGGTCTTACACTAGCTGGCTCTCAT-AATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT--CTCTC-TCAA--T-GCTGATG
16026199 CATGTCCCAGACATGTCTTA
1 CATGTCCCAGACATGTCTTA
16026219 AACTGGCACA
Statistics
Matches: 136, Mismatches: 13, Indels: 25
0.78 0.07 0.14
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.10
45 16 0.12
46 43 0.32
47 14 0.10
48 14 0.10
49 4 0.03
50 10 0.07
51 14 0.10
52 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCTGATG
Found at i:16028019 original size:16 final size:16
Alignment explanation
Indices: 16027998--16028033 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
16027988 CATTGAGGAA
16027998 AAACTTAGAAAAATTC
1 AAACTTAGAAAAATTC
*
16028014 AAACTTAGAAAAATTT
1 AAACTTAGAAAAATTC
16028030 AAAC
1 AAAC
16028034 AGACAGATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (16 bp):
AAACTTAGAAAAATTC
Found at i:16034006 original size:48 final size:48
Alignment explanation
Indices: 16033948--16034252 Score: 538
Period size: 48 Copynumber: 6.4 Consensus size: 48
16033938 ATATACACAC
*
16033948 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
16033996 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
16034044 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
16034092 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
16034140 ATCTCATACATATTTCACACTTGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
16034188 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
16034236 ATCTCATATATATTTCA
1 ATCTCATACATATTTCA
16034253 GCAATAGCTT
Statistics
Matches: 246, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 246 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:16038486 original size:46 final size:46
Alignment explanation
Indices: 16038325--16038497 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
16038315 AACCCGCCCC
* * * * *
16038325 TAAGTGAACTCGGACTCAACTCAACCAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
16038371 TAAATGAACTCGGACTCAACTCCACGAGTTCGAATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG---GAC-ATTTGCATCCA
* * * *
16038419 TCA-CGAACTTGGACTCAACTCAACGAGTTTGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
16038464 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
16038498 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 55 0.56
47 24 0.24
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:16038491 original size:93 final size:93
Alignment explanation
Indices: 16038330--16038500 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
16038320 GCCCCTAAGT
* * *
16038330 GAACTCGGACTCAACTCAACCAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCCA
1 GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
16038395 CGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * * * * *
16038423 GAACTTGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
16038488 CGAGTTCGGATGC
66 CGAGTTCGAATGC
16038501 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:16073154 original size:29 final size:29
Alignment explanation
Indices: 16073115--16073202 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
16073105 CAAAGATAAC
*
16073115 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
16073144 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
16073173 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
16073203 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:16073173 original size:15 final size:15
Alignment explanation
Indices: 16073115--16073193 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
16073105 CAAAGATAAC
*
16073115 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
16073129 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
16073144 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
16073158 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
16073173 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
16073188 AAGAAA
1 AAGAAA
16073194 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:16073202 original size:15 final size:15
Alignment explanation
Indices: 16073126--16073202 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
16073116 AGAAAACCGA
16073126 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
16073141 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
16073155 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
16073169 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
16073185 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
16073200 ATA
1 ATA
16073203 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:16076295 original size:46 final size:46
Alignment explanation
Indices: 16076123--16076295 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
16076113 TGTAACCCGC
* * * * *
16076123 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
* * * * *
16076169 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCAT
* * *
16076219 -C-TCA-CGAATTCAGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
*
16076262 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
16076296 GAATGCCCAA
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 55 0.56
47 23 0.23
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
Found at i:16077878 original size:26 final size:26
Alignment explanation
Indices: 16077849--16077900 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16077839 CAATTGGTAA
16077849 GTTTAAGTTCCTTTATACAAGCATAT
1 GTTTAAGTTCCTTTATACAAGCATAT
*
16077875 GTTTAAGTTCCTTTATACGAGCATAT
1 GTTTAAGTTCCTTTATACAAGCATAT
16077901 TAAGCACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (26 bp):
GTTTAAGTTCCTTTATACAAGCATAT
Found at i:16082020 original size:40 final size:40
Alignment explanation
Indices: 16081956--16082207 Score: 303
Period size: 40 Copynumber: 6.3 Consensus size: 40
16081946 TCTTCGGAAT
* * * *
16081956 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* * *
16081995 TTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
*
16082035 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* * *
16082075 TTAGCTCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCAACTAGCACAAATGCCTTCGGGTC
* * * *
16082115 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* * *
16082155 TTAGCCCGGATATATC-GCTTAGCACAAAAGCCTTCGGGAC
1 TTAGCCCGGATATATCAAC-TAGCACAAATGCCTTCGGGTC
16082195 TTAGCCCGGATAT
1 TTAGCCCGGATAT
16082208 CATTCGAGTA
Statistics
Matches: 181, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
39 7 0.04
40 170 0.94
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
Found at i:16082180 original size:120 final size:119
Alignment explanation
Indices: 16081947--16082206 Score: 396
Period size: 120 Copynumber: 2.2 Consensus size: 119
16081937 ACCCAAGTTT
* * *
16081947 CTTCGGAATTTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCA
1 CTTCGGGACTTAGCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCA
* *
16082012 ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
* * *
16082066 CTTCGGGTCTTAGCTCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGC-CGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
16082131 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-GCTTAGCACAAAAGC
65 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAC-TAGCACAAAAGC
16082186 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAG-CCGGATA
16082207 TCATTCGAGT
Statistics
Matches: 127, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
119 12 0.09
120 114 0.90
121 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CTTCGGGACTTAGCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCA
ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
Found at i:16089974 original size:45 final size:44
Alignment explanation
Indices: 16089910--16090037 Score: 184
Period size: 45 Copynumber: 2.8 Consensus size: 44
16089900 ATTATTGTAT
*
16089910 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCAGTGA
*
16089955 GACACTATTCGGGACTTTGAGCCTAGCAGGCTACAATGCCAGTGA
1 GACACTATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCAGTGA
* * *
16090000 GATACTATTTGAGCTTTCGAGCCTAGCAGGCTATAATG
1 GACACTATTCGGGCTTT-GAGCCTAGCAGGCTATAATG
16090038 TTGATGAAAG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
44 4 0.05
45 71 0.95
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (44 bp):
GACACTATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
Found at i:16097619 original size:45 final size:45
Alignment explanation
Indices: 16097555--16097718 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 45
16097545 ATTATCGTAC
*
16097555 GACACTATTCGGGCCTTTGACCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
16097600 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGATGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
16097645 GATACTATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
** *
16097690 -A-AGGATATCAGG-CTTTGAGCCTAGCAGGC
1 GACACTAT-TCGGGCCTTTGAGCCTAGCAGGC
16097719 AAAATTTCTG
Statistics
Matches: 108, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
43 16 0.15
44 14 0.13
45 78 0.72
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:16101790 original size:56 final size:56
Alignment explanation
Indices: 16101728--16101839 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
16101718 AAAGTCTCAG
16101728 ACACAGTGCATGCTATATAAGAATGCGTAGATCCAACATCAATCAATGAAGTATAA
1 ACACAGTGCATGCTATATAAGAATGCGTAGATCCAACATCAATCAATGAAGTATAA
16101784 ACACAGTGCATGCTATATAAGAATGCGTAGATCCAACATCAATCAATGAAGTATAA
1 ACACAGTGCATGCTATATAAGAATGCGTAGATCCAACATCAATCAATGAAGTATAA
16101840 GGTACATTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (56 bp):
ACACAGTGCATGCTATATAAGAATGCGTAGATCCAACATCAATCAATGAAGTATAA
Found at i:16106649 original size:28 final size:26
Alignment explanation
Indices: 16106609--16106705 Score: 79
Period size: 28 Copynumber: 3.5 Consensus size: 26
16106599 ATATTGAGCC
*
16106609 CGCACACTCAGTGCTATTACAATCAACT
1 CGCACACTTAGTGCTA-TA-AATCAACT
* *
16106637 CGCACACTTAGTGCCACGT-AATCAAAT
1 CGCACACTTAGTGCTA--TAAATCAACT
* * *
16106664 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTATA-AATCA-ACT
16106692 CGCACACTTAGTGC
1 CGCACACTTAGTGC
16106706 CGCATGGTCA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
27 25 0.45
28 30 0.54
29 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
CGCACACTTAGTGCTATAAATCAACT
Found at i:16106667 original size:27 final size:27
Alignment explanation
Indices: 16106631--16106786 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
16106621 GCTATTACAA
* * *
16106631 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
16106658 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
16106685 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
16106713 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
16106740 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
16106767 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
16106787 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:16106693 original size:55 final size:55
Alignment explanation
Indices: 16106609--16106787 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
16106599 ATATTGAGCC
* * * * * *
16106609 CGCACACTCAGTGCTATTACAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
16106664 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
16106719 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
16106773 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16106788 GTACAATTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
54 43 0.42
55 60 0.58
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:16106730 original size:82 final size:81
Alignment explanation
Indices: 16106631--16106786 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
16106621 GCTATTACAA
* * *
16106631 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
16106695 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
16106713 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
16106778 ACTTAGTGC
66 ACTTAGTGC
16106787 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16114660 original size:27 final size:27
Alignment explanation
Indices: 16114630--16114807 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
16114620 ATATTGAGCC
* * *
16114630 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
16114657 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
16114684 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
16114712 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
16114739 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
16114766 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
16114793 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16114808 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:16114723 original size:55 final size:55
Alignment explanation
Indices: 16114630--16114807 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
16114620 ATATTGAGCC
* * *
16114630 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
16114684 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
16114739 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
16114793 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16114808 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:16114769 original size:82 final size:81
Alignment explanation
Indices: 16114651--16114806 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
16114641 TGCTATACAA
* * *
16114651 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
16114716 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
16114733 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
16114797 CACTTAGTGC
65 CACTTAGTGC
16114807 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16118278 original size:6 final size:6
Alignment explanation
Indices: 16118249--16118463 Score: 127
Period size: 6 Copynumber: 34.8 Consensus size: 6
16118239 TATTAGAACT
* * * * *
16118249 AGAATC AAAATG AGAATC AAAATC AGAATC AGAATG AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
16118298 AAAATC AGAATC AGAATC AGAATT AGGTAA-C AAAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* * * *
16118347 AGGTAA-C AAAATC AGAATC AGTATC AGGTAA-C AGAATC AGTATC AGAACC
1 A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* * *
16118397 AGAATT AGAATT AGGTAA-C AGAATC AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
16118447 AGAATT AGAATC AGAAT
1 AGAATC AGAATC AGAAT
16118464 GTGAATGCAA
Statistics
Matches: 159, Mismatches: 32, Indels: 36
0.70 0.14 0.16
Matches are distributed among these distances:
5 11 0.07
6 125 0.79
7 15 0.09
8 8 0.05
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:16118296 original size:31 final size:31
Alignment explanation
Indices: 16118261--16118463 Score: 175
Period size: 31 Copynumber: 6.5 Consensus size: 31
16118251 AATCAAAATG
* * *
16118261 AGAATCAAAATCAGAATCAGAATGAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
16118292 AGAATCAAAATCAGAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
16118322 AGGTAA-CAAAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
* *
16118354 AAAATCAGAATCAGTATCAGGTAA-CA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATCAGGTAA-C
* * * *
16118385 AGTATCAGAACCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
16118416 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
16118447 AGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAAT
16118464 GTGAATGCAA
Statistics
Matches: 139, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
29 3 0.02
30 8 0.06
31 116 0.83
32 9 0.06
33 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:16118313 original size:37 final size:37
Alignment explanation
Indices: 16118254--16118348 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
16118244 GAACTAGAAT
* * * *
16118254 CAAAATGAGAATCAAAATCAGAATCAGAATGAGGTGA
1 CAAAATCAAAATCAGAATCAGAATCAGAATGAGGTAA
* *
16118291 CAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAA
1 CAAAATCAAAATCAGAATCAGAATCAGAATGAGGTAA
* *
16118328 CAAAATCAGAATCAGTATCAG
1 CAAAATCAAAATCAGAATCAG
16118349 GTAACAAAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.51, C:0.14, G:0.18, T:0.18
Consensus pattern (37 bp):
CAAAATCAAAATCAGAATCAGAATCAGAATGAGGTAA
Found at i:16118336 original size:25 final size:25
Alignment explanation
Indices: 16118306--16118394 Score: 133
Period size: 25 Copynumber: 3.6 Consensus size: 25
16118296 TCAAAATCAG
*
16118306 AATCAGAATCAGAATTAGGTAACAA
1 AATCAGAATCAGAATCAGGTAACAA
*
16118331 AATCAGAATCAGTATCAGGTAACAA
1 AATCAGAATCAGAATCAGGTAACAA
* *
16118356 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAA
*
16118381 AATCAGTATCAGAA
1 AATCAGAATCAGAA
16118395 CCAGAATTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAA
Found at i:16118419 original size:25 final size:23
Alignment explanation
Indices: 16118379--16118460 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 23
16118369 ATCAGGTAAC
*
16118379 AGAATCAGTATCAGAACCAGAATT
1 AGAATCAGTAACAGAA-CAGAATT
* *
16118403 AGAATTAGGTAACAGAATCAGAATC
1 AGAATCA-GTAACAGAA-CAGAATT
*
16118428 AGAATCAGTATCAGGTAACAGAATT
1 AGAATCAGTAACA-G-AACAGAATT
16118453 AGAATCAG
1 AGAATCAG
16118461 AATGTGAATG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
24 11 0.23
25 35 0.73
26 2 0.04
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (23 bp):
AGAATCAGTAACAGAACAGAATT
Found at i:16118460 original size:19 final size:19
Alignment explanation
Indices: 16118272--16118429 Score: 99
Period size: 19 Copynumber: 8.8 Consensus size: 19
16118262 GAATCAAAAT
* *
16118272 CAGAATCAGAATGAGGTGA
1 CAGAATCAGAATCAGGTAA
*
16118291 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
16118308 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
* *
16118328 CAAAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGGTAA
16118346 CAGGTAA-CA-AA--A--T--
1 CA-G-AATCAGAATCAGGTAA
*
16118359 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
*
16118378 CAGAATCAGTATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
16118395 CCAGAATTAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
16118415 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
16118430 AATCAGTATC
Statistics
Matches: 108, Mismatches: 15, Indels: 32
0.70 0.10 0.21
Matches are distributed among these distances:
11 2 0.02
12 3 0.03
13 3 0.03
15 2 0.02
16 1 0.01
17 4 0.04
18 32 0.30
19 55 0.51
20 6 0.06
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:16118463 original size:37 final size:36
Alignment explanation
Indices: 16118356--16118463 Score: 118
Period size: 37 Copynumber: 3.1 Consensus size: 36
16118346 CAGGTAACAA
*
16118356 AATCAGAATCAGTATCAGGTAACAGAATCAGTATCAG
1 AATCAGAATCAGTATCAGGTAACAGAAT-AGAATCAG
* * * *
16118393 AACCAGAATTAGAATTAGGTAAC-----AGAATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATAGAATCAG
16118424 AATCAGAATCAGTATCAGGTAACAGAATTAGAATCAG
1 AATCAGAATCAGTATCAGGTAACAGAA-TAGAATCAG
16118461 AAT
1 AAT
16118464 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
31 26 0.46
37 30 0.54
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (36 bp):
AATCAGAATCAGTATCAGGTAACAGAATAGAATCAG
Found at i:16118629 original size:27 final size:26
Alignment explanation
Indices: 16118581--16118640 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
16118571 GCGAGGCTAC
*
16118581 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
16118608 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
16118634 CATATAT
1 CAGATAT
16118641 ATATACATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:16118737 original size:27 final size:26
Alignment explanation
Indices: 16118689--16118740 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
16118679 GCGAGGCTGC
*
16118689 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
16118715 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
16118741 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:16119017 original size:27 final size:27
Alignment explanation
Indices: 16118987--16119226 Score: 247
Period size: 27 Copynumber: 8.9 Consensus size: 27
16118977 GGTAAAATGG
* *
16118987 TAATTTTACCCTACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
16119014 TAATTCTACCTTAC-AGGAGTATTTC-A
1 TAATTCTACCCTACAAGG-GTATTTCGA
* *
16119040 GTAATTCTACCGTAC-AGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
16119067 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
16119094 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
16119120 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
16119147 GTATTTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
16119175 TAATTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
16119202 CATTTCTACCCTACGAGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
16119227 AGTAATTTTG
Statistics
Matches: 186, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.12
27 163 0.88
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:16119141 original size:54 final size:54
Alignment explanation
Indices: 16118985--16119233 Score: 299
Period size: 54 Copynumber: 4.6 Consensus size: 54
16118975 GGGGTAAAAT
* * * *
16118985 GGTAATTTTACCCTACAAGGGTATCTC-GATAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAAGG-GTATTTC
* * * *
16119039 AGTAATTCTACCGTACA-GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* *
16119092 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * *
16119146 AGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* *
16119200 GGCATTTCTACCCTAC-GAGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAG-GGGTATTTCAGTAATT
16119234 TTGTAAATTA
Statistics
Matches: 170, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
53 43 0.25
54 127 0.75
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
Found at i:16119179 original size:81 final size:81
Alignment explanation
Indices: 16118989--16119230 Score: 346
Period size: 81 Copynumber: 3.0 Consensus size: 81
16118979 TAAAATGGTA
* * * * * *
16118989 ATTT-TACCCTACAAGGGTATCTCGATAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
*
16119053 ACA-GGGTATTTCGGT
66 ACAGGGGTATTTCAGT
16119068 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
16119133 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* * * * *
16119149 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGCATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
16119214 AC-GAGGGTATTTCAGT
66 ACAG-GGGTATTTCAGT
16119230 A
1 A
16119231 ATTTTGTAAA
Statistics
Matches: 148, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
79 4 0.03
80 58 0.39
81 86 0.58
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:16119247 original size:27 final size:27
Alignment explanation
Indices: 16119217--16119316 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
16119207 CTACCCTACG
16119217 AGGGTATTTCAGTAATTTTGTAAATTA
1 AGGGTATTTCAGTAATTTTGTAAATTA
*** *
16119244 AGGGTAAAACAGTAATTCTGTAAATTA
1 AGGGTATTTCAGTAATTTTGTAAATTA
* ** * **
16119271 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTGTAAATTA
*
16119298 AGGGTATTTCAATAATTTT
1 AGGGTATTTCAGTAATTTT
16119317 ACAGGTCGAG
Statistics
Matches: 55, Mismatches: 16, Indels: 4
0.73 0.21 0.05
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAATTA
Found at i:16119259 original size:81 final size:81
Alignment explanation
Indices: 16119014--16119262 Score: 211
Period size: 81 Copynumber: 3.1 Consensus size: 81
16119004 GGTATCTCGA
* * * * * **
16119014 TAATTCTACCTTAC-AGGAGTATTTCAGTAATTCTACCGTACA-GGGTATTTCGGTATTTCTACC
1 TAATTCTACCCTACAAGG-GTATTTTAGCAATTCTACCCTACAGGGGTATTTCAGTATTTCTAAA
* *** *
16119077 CTACAAGGGTATTTCGG
65 CTACAGGGGTAAAACAG
* * **
16119094 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTTAGCAATTCTACCCTACAGGGGTATTTCAGTATTTCTAAAC
*** *
16119159 TACAGGGGTATTTCGG
66 TACAGGGGTAAAACAG
* * *
16119175 TAATTCTACCCTACAAGGGTATTTTGGCATTTCTACCCTAC-GAGGGTATTTCAGTAATTTTGTA
1 TAATTCTACCCTACAAGGGTATTTTAGCAATTCTACCCTACAG-GGGTATTTCAGT-A-TTTCTA
*
16119239 AATTA-A-GGGTAAAACAG
63 AACTACAGGGGTAAAACAG
16119256 TAATTCT
1 TAATTCT
16119263 GTAAATTAAG
Statistics
Matches: 146, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
80 36 0.25
81 101 0.69
82 2 0.01
83 7 0.05
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTTAGCAATTCTACCCTACAGGGGTATTTCAGTATTTCTAAAC
TACAGGGGTAAAACAG
Found at i:16119317 original size:27 final size:27
Alignment explanation
Indices: 16119283--16119401 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 27
16119273 GGTACTTTGG
16119283 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
16119310 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * ***
16119337 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAGTCGA-GGGTATTTCAA
* * **
16119364 TAATTTTACAA-CCTAGTGGTATTTTGA
1 TAATTTTACAAGTCGAG-GGTATTTCAA
16119391 TAATTTTACAA
1 TAATTTTACAA
16119402 ACCAGGGGTA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.04
27 76 0.96
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:16119329 original size:81 final size:81
Alignment explanation
Indices: 16119244--16119400 Score: 174
Period size: 81 Copynumber: 1.9 Consensus size: 81
16119234 TTGTAAATTA
** * *
16119244 AGGGTAAAACAGTAA-TTCTGTAAATTAAGGGTACTTTGGTAATTTTACAAGTCGAG-GGTATTT
1 AGGGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTTGGTAATTTTACAA-CCGAGTGGTATTT
16119307 CAATAATTTTACAGGTCG
64 CAATAATTTTACAGGTCG
*** * * * **
16119325 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAACCTAGTGGTATTTTG
1 AGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAACCGAGTGGTATTTCA
16119390 ATAATTTTACA
66 ATAATTTTACA
16119401 AACCAGGGGT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
80 3 0.05
81 56 0.90
82 3 0.05
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAACCGAGTGGTATTTCA
ATAATTTTACAGGTCG
Found at i:16119411 original size:81 final size:79
Alignment explanation
Indices: 16119272--16119719 Score: 461
Period size: 81 Copynumber: 5.5 Consensus size: 79
16119262 TGTAAATTAA
* * *** *** **
16119272 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAA--CCAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTG
* *
16119336 GTAATTTCACAAATCAG
63 GTAATTTTACAAACCAG
*
16119353 GGGTATTTTGGTAATTTTACAACCTAGTGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAACC-AG-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
*
16119418 TAATTTTACAAACTAG
64 TAATTTTACAAACCAG
* * * *
16119434 GGGTATTTTAGTATTTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTA-CAACC-AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
**
16119499 TAATTTTGTAAACCA-
64 TAATTTTACAAACCAG
* * * * *
16119514 GGGTATTTTGGTAATCTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTAC-AACCA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
16119579 TAATTTTACAAACCAG
64 TAATTTTACAAACCAG
* *
16119595 GGGTATTTTGGTAATTTTGTA-AACCAAGGGTATTTTGTTAATTTTACAAACCAGAGGTATTTTG
1 GGGTATTTTGGTAA-TTT-TACAACC-AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
* * *
16119659 GTGATTTTATAAACCAA
63 GTAATTTTACAAACCAG
* *
16119676 GGGTATTTTAGTAATTTTACAAACCAGGGGTATGTTGGTAATTT
1 GGGTATTTTGGTAATTTTAC-AACCA-GGGTATTTTGGTAATTT
16119720 GGTAAACTAA
Statistics
Matches: 309, Mismatches: 45, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
79 4 0.01
80 72 0.23
81 221 0.72
82 10 0.03
83 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAACCAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTA
ATTTTACAAACCAG
Found at i:16119726 original size:27 final size:27
Alignment explanation
Indices: 16119326--16119719 Score: 504
Period size: 27 Copynumber: 14.6 Consensus size: 27
16119316 TACAGGTCGA
** * *
16119326 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
16119353 GGGTATTTTGGTAATTTTAC-AACCTAG
1 GGGTATTTTGGTAATTTTACAAACC-AG
* *
16119380 TGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119407 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
16119434 GGGTATTTTAGTATTTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119461 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
**
16119488 GGGTATTTTGGTAATTTTGTAAACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119514 GGGTATTTTGGTAATCTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
16119541 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119568 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
16119595 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119622 GGGTATTTTGTTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
16119649 AGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119676 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
16119703 GGGTATGTTGGTAATTT
1 GGGTATTTTGGTAATTT
16119720 GGTAAACTAA
Statistics
Matches: 311, Mismatches: 53, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 26 0.08
27 281 0.90
28 4 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:16124841 original size:17 final size:18
Alignment explanation
Indices: 16124812--16124845 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
16124802 TGGGTCGGAC
16124812 TGGGCTGTGTGGGCCCAA
1 TGGGCTGTGTGGGCCCAA
16124830 TGGGCT-TGTGGGCCCA
1 TGGGCTGTGTGGGCCCA
16124846 CACGGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.09, C:0.24, G:0.44, T:0.24
Consensus pattern (18 bp):
TGGGCTGTGTGGGCCCAA
Found at i:16125335 original size:27 final size:27
Alignment explanation
Indices: 16125291--16125483 Score: 172
Period size: 27 Copynumber: 7.1 Consensus size: 27
16125281 GGTCGTAATG
* * * *
16125291 ACCCCCGATTTATGAAATTATTGAAAT
1 ACCCCCAATTTGTAAAATTACTGAAAT
* * *
16125318 ACCCTCGATTTCTAAAATTACTGAAAT
1 ACCCCCAATTTGTAAAATTACTGAAAT
* *
16125345 ACCCCCGATTTGTAAAATTA-TCAAAAT
1 ACCCCCAATTTGTAAAATTACT-GAAAT
** * **
16125372 ACCCTTAATTTGTGAAATTACCAAAAT
1 ACCCCCAATTTGTAAAATTACTGAAAT
* * **
16125399 ACCCTCAATTTGTGAAATTACCAAAAT
1 ACCCCCAATTTGTAAAATTACTGAAAT
* * *
16125426 ACCCCCAACTTGTAAATTTATTGAAAT
1 ACCCCCAATTTGTAAAATTACTGAAAT
*
16125453 ACCCCCAATTTGTAAACTTACTGAAAT
1 ACCCCCAATTTGTAAAATTACTGAAAT
16125480 ACCC
1 ACCC
16125484 TTGTAGGGTA
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
ACCCCCAATTTGTAAAATTACTGAAAT
Found at i:16125439 original size:81 final size:81
Alignment explanation
Indices: 16125314--16125484 Score: 200
Period size: 81 Copynumber: 2.1 Consensus size: 81
16125304 GAAATTATTG
* ** * * **
16125314 AAATACCCTCGATTTCTAAAATTACTGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTTA
1 AAATACCCTCAATTTCTAAAATTACCAAAATACCCCCAACTTGTAAAATTATCAAAATACCCCCA
16125379 ATTTGTGAAA-TTACCA
66 ATTTGT-AAACTTACCA
* * * **
16125395 AAATACCCTCAATTTGTGAAATTACCAAAATACCCCCAACTTGTAAATTTATTGAAATACCCCCA
1 AAATACCCTCAATTTCTAAAATTACCAAAATACCCCCAACTTGTAAAATTATCAAAATACCCCCA
**
16125460 ATTTGTAAACTTACTG
66 ATTTGTAAACTTACCA
16125476 AAATACCCT
1 AAATACCCT
16125485 TGTAGGGTAA
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 3 0.04
81 72 0.96
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (81 bp):
AAATACCCTCAATTTCTAAAATTACCAAAATACCCCCAACTTGTAAAATTATCAAAATACCCCCA
ATTTGTAAACTTACCA
Found at i:16125546 original size:26 final size:26
Alignment explanation
Indices: 16125481--16125552 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
16125471 TACTGAAATA
*
16125481 CCCTTGTAGGGTAAAATGACTGTTTTC
1 CCCTTGT-GGGTAAAATGACTATTTTC
*** * *
16125508 CCCTAAAGAGTAAAATGACTATTTTG
1 CCCTTGTGGGTAAAATGACTATTTTC
16125534 CCCTTGTGGGT-AAATGACT
1 CCCTTGTGGGTAAAATGACT
16125553 GACTTAGGCT
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
25 8 0.23
26 23 0.66
27 4 0.11
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (26 bp):
CCCTTGTGGGTAAAATGACTATTTTC
Found at i:16125903 original size:22 final size:22
Alignment explanation
Indices: 16125834--16125891 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
16125824 TAATCTGATT
16125834 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTCTGTGCCAACCTAAAA
16125856 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTCTGTGCCAACCTAAAA
16125878 ATGGCTCTGTGCCA
1 ATGGCTCTGTGCCA
16125892 TCTTGACTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (22 bp):
ATGGCTCTGTGCCAACCTAAAA
Found at i:16129428 original size:40 final size:40
Alignment explanation
Indices: 16129288--16129431 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
16129278 TCTCGATATC
* * * *
16129288 TCGCACACTAAGTTCCGTACATAGCT-GAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAG-TAGAAGCTATCTCGAA
* * * *
16129328 TCGCACATTAAGTGCCACACATAGTAGAAGCTATCTCGATC
1 TCGCACACTAAGTGCCATATATAGTAGAAGCTATCTCGA-A
* *
16129369 TCGCACACTAAGTGCCATATATAGTCGAAGCTATGC-GGAA
1 TCGCACACTAAGTGCCATATATAGTAGAAGCTAT-CTCGAA
16129409 TCGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
16129432 TATAGCTGAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 55 0.62
41 32 0.36
42 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGTAGAAGCTATCTCGAA
Found at i:16139024 original size:41 final size:39
Alignment explanation
Indices: 16138924--16139145 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 39
16138914 TCGATATCTT
* * * *
16138924 GCACACTAAGTGCCGTATATAGCCGAAGCTATCACAAATC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTC-GATC
16138964 GCACAC-AAGTGCCATATATAGCAGAAGCTATCTCGATC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTCGATC
*
16139002 TTGCACACTAAGTGCCATATATAGTC-GAAGCTATTTCGGATC
1 --GCACACTAAGTGCCATATATAG-CAGAAGCTATCTC-GATC
*
16139044 GCACACTAAGTGCCATATATAGCAGAAGCCATCTCGATCTC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTCGA--TC
** * *
16139085 GCACACTAAGTGTGATATATAGCCGAAGCTATGTCGAATC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTCG-ATC
* *
16139125 ACGCACTAAGTGCCATATATA
1 GCACACTAAGTGCCATATATA
16139146 TAGCTGAATT
Statistics
Matches: 157, Mismatches: 16, Indels: 18
0.82 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 28 0.18
40 62 0.39
41 58 0.37
42 6 0.04
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (39 bp):
GCACACTAAGTGCCATATATAGCAGAAGCTATCTCGATC
Found at i:16139096 original size:81 final size:81
Alignment explanation
Indices: 16138919--16139145 Score: 330
Period size: 81 Copynumber: 2.8 Consensus size: 81
16138909 AATTCTCGAT
* * *
16138919 ATCTTGCACACTAAGTGCCGTATATAGCCGAAGCTATCACAAATCGCACAC-AAGTGCCATATAT
1 ATCTTGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
*
16138983 AGCAGAAGCTATCTCG
66 AGCAGAAGCCATCTCG
* * *
16138999 ATCTTGCACACTAAGTGCCATATATAGTCGAAGCTATTTCGGATCGCACACTAAGTGCCATATAT
1 ATCTTGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
16139064 AGCAGAAGCCATCTCG
66 AGCAGAAGCCATCTCG
* ** * * *
16139080 ATCTCGCACACTAAGTGTGATATATAGCCGAAGCTATGTCGAATCACGCACTAAGTGCCATATAT
1 ATCTTGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
16139145 A
66 A
16139146 TAGCTGAATT
Statistics
Matches: 131, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 45 0.34
81 86 0.66
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (81 bp):
ATCTTGCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
AGCAGAAGCCATCTCG
Found at i:16142086 original size:48 final size:48
Alignment explanation
Indices: 16142031--16142157 Score: 155
Period size: 48 Copynumber: 2.6 Consensus size: 48
16142021 TGTGATCTTG
* * * *
16142031 TGTAAGACCATGGCTGGGACATGGCATTGGCATCAATCTACGATTCCA
1 TGTAAGACCATGTCCGGGACATGGCATTGGCATCAATATACGATCCCA
* * **
16142079 TGTAAGACCATGTCGGGGACATGGCATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATGTCCGGGACATGGCATTGGCATCAATATACGATCCCA
* * *
16142127 TGAAAGACCATATCCGGGATATGGCATTGGC
1 TGTAAGACCATGTCCGGGACATGGCATTGGC
16142158 GTCCTACCTT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (48 bp):
TGTAAGACCATGTCCGGGACATGGCATTGGCATCAATATACGATCCCA
Found at i:16144783 original size:40 final size:41
Alignment explanation
Indices: 16144724--16144948 Score: 280
Period size: 40 Copynumber: 5.6 Consensus size: 41
16144714 CATTTGAATG
* *
16144724 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* *
16144764 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* *
16144804 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* * *
16144844 ATACCCGGGTTAAGACCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* * *
16144884 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
* * *
16144924 ATACCCGAGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
16144949 ATTGTGCTTG
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.01
40 154 0.96
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGATT
Found at i:16144858 original size:80 final size:80
Alignment explanation
Indices: 16144724--16144975 Score: 330
Period size: 80 Copynumber: 3.2 Consensus size: 80
16144714 CATTTGAATG
* * * * * * *
16144724 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
16144788 ATTTGTGCGAGTTGA-T
65 ATTTGTGCGAG-TGATT
16144804 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
* *
16144869 TTTATGCTAGTGATT
66 TTTGTGCGAGTGATT
* *
16144884 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGAGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
* ** *
16144949 ATTGTGCTTGTGGTT
66 TTTGTGCGAGTGATT
16144964 ATATCC-GGCTAA
1 ATATCCGGGCTAA
16144976 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 9 0.06
80 143 0.93
81 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
TTTGTGCGAGTGATT
Found at i:16144941 original size:120 final size:120
Alignment explanation
Indices: 16144728--16144955 Score: 393
Period size: 120 Copynumber: 1.9 Consensus size: 120
16144718 TGAATGATAT
*
16144728 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
* * *
16144793 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATACCCGAGCTAAGACCCGAAGGCAATTGTGCGAGTTGCTATAC
*
16144848 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
* *
16144913 TGCGAGTTGCTATACCCGAGTTAAGACCCGAAGGCAATTGTGC
66 TGCGAGTTGATATACCCGAGCTAAGACCCGAAGGCAATTGTGC
16144956 TTGTGGTTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 101 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATACCCGAGCTAAGACCCGAAGGCAATTGTGCGAGTTGCTATAC
Found at i:16147136 original size:13 final size:13
Alignment explanation
Indices: 16147118--16147145 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16147108 GGAATGTGTT
16147118 TCGTCCGAGGCTA
1 TCGTCCGAGGCTA
16147131 TCGTCCGAGGCTA
1 TCGTCCGAGGCTA
16147144 TC
1 TC
16147146 ATGTGTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.29, T:0.25
Consensus pattern (13 bp):
TCGTCCGAGGCTA
Found at i:16150812 original size:40 final size:41
Alignment explanation
Indices: 16150753--16151024 Score: 376
Period size: 40 Copynumber: 6.8 Consensus size: 41
16150743 CATTTGAATG
* * *
16150753 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
16150793 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
16150833 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
16150873 ATACCCGGGTTAAGACCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
16150913 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
16150953 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
16150993 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
16151025 TTGTGGTTAT
Statistics
Matches: 208, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 200 0.96
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:16150970 original size:120 final size:120
Alignment explanation
Indices: 16150757--16151044 Score: 506
Period size: 120 Copynumber: 2.4 Consensus size: 120
16150747 TGAATGATAT
* *
16150757 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
16150822 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
16150877 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
16150942 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* * * * *
16150997 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAA
16151045 ATTCCAAAGA
Statistics
Matches: 161, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 6 0.04
120 155 0.96
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:16167850 original size:47 final size:47
Alignment explanation
Indices: 16167740--16168343 Score: 1032
Period size: 47 Copynumber: 12.7 Consensus size: 47
16167730 TTAGGATTCT
* * *
16167740 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAAT-ACCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
16167786 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16167833 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16167880 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16167929 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16167978 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16168025 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16168074 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16168121 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16168168 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16168215 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
16168262 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
16168309 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16168344 TCCCGAAGGG
Statistics
Matches: 539, Mismatches: 13, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
45 1 0.00
46 38 0.07
47 357 0.66
49 143 0.27
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16168518 original size:37 final size:37
Alignment explanation
Indices: 16168462--16168540 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
16168452 CCGAGCTCTA
* * *
16168462 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
16168499 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
16168536 AAGAC
1 AAGAC
16168541 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:16170038 original size:40 final size:40
Alignment explanation
Indices: 16169755--16170026 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
16169745 GAGAATTGAG
16169755 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
16169795 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
16169835 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
16169875 AGTGATATATCTGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
16169915 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
16169955 AGAGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
16169995 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
16170027 ATCATGCTGG
Statistics
Matches: 211, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:16170243 original size:25 final size:25
Alignment explanation
Indices: 16170202--16170253 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
16170192 TGTGTAATAA
16170202 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
16170227 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
16170252 TG
1 TG
16170254 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:16171338 original size:15 final size:15
Alignment explanation
Indices: 16171318--16171347 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16171308 GAGAAATCCG
16171318 AACCTATGCATCGGT
1 AACCTATGCATCGGT
16171333 AACCTATGCATCGGT
1 AACCTATGCATCGGT
16171348 GGAAATTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (15 bp):
AACCTATGCATCGGT
Found at i:16173942 original size:47 final size:47
Alignment explanation
Indices: 16173891--16174446 Score: 943
Period size: 47 Copynumber: 11.7 Consensus size: 47
16173881 TTAGGATTCT
* * *
16173891 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
16173938 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16173985 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16174032 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
16174081 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
16174130 ATGTGATGAATGTGAAAGTGTATATATGTTATAAGGTCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16174177 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16174224 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16174271 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
16174318 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
16174365 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
16174412 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
16174447 TCCCGAAGGG
Statistics
Matches: 489, Mismatches: 17, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 392 0.80
49 96 0.20
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:16174621 original size:37 final size:37
Alignment explanation
Indices: 16174565--16174643 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
16174555 CCGAGCTCTA
* * *
16174565 AAGACCCGATGACTACGTGTGGGGATTTTCTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATCTCCGGGT
* *
16174602 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATCTCCGGGT
16174639 AAGAC
1 AAGAC
16174644 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATCTCCGGGT
Found at i:16175269 original size:22 final size:23
Alignment explanation
Indices: 16175244--16175289 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
16175234 TGTTTACTTA
16175244 GTGAAGTTTAAA-TTTATCTCTG
1 GTGAAGTTTAAATTTTATCTCTG
16175266 GTGAAGTTTAAATTTTATCTCTG
1 GTGAAGTTTAAATTTTATCTCTG
16175289 G
1 G
16175290 CTGTGCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.46
Consensus pattern (23 bp):
GTGAAGTTTAAATTTTATCTCTG
Found at i:16183228 original size:32 final size:32
Alignment explanation
Indices: 16183190--16183253 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
16183180 TATACTTAGG
16183190 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
1 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
16183222 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
1 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
16183254 AACATTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.50
Consensus pattern (32 bp):
TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
Found at i:16185753 original size:47 final size:48
Alignment explanation
Indices: 16185629--16185846 Score: 298
Period size: 48 Copynumber: 4.6 Consensus size: 48
16185619 TGGTTATATG
* * *
16185629 TGTAATGTGGTGTTAAGTGGATATACCAC-GATTACACATATTTATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACAG-TTACACATATTGATACA
* * *
16185677 TGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTGATACA
* * *
16185725 T-TAACATGGTGGTAAGTGGATATACCACAATTACACATATTGATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTGATACA
* * *
16185772 TGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTGATACA
16185820 T-TAACGTGGTGCTAAGTGGATATACCA
1 TGTAACGTGGTGCTAAGTGGATATACCA
16185847 TGGTTAAACA
Statistics
Matches: 149, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
47 66 0.44
48 82 0.55
49 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTGATACA
Found at i:16185799 original size:95 final size:95
Alignment explanation
Indices: 16185636--16185846 Score: 377
Period size: 95 Copynumber: 2.2 Consensus size: 95
16185626 ATGTGTAATG
* * *
16185636 TGGTGTTAAGTGGATATACCACGATTACACATATTTATACATGTAACGTGGTGCTAAGTGGATAT
1 TGGTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATAT
16185701 GCCACAGTTACATATATTGATTCATTAACA
66 GCCACAGTTACATATATTGATTCATTAACA
*
16185731 TGGTGGTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATAT
1 TGGTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATAT
*
16185796 GCCACAGTTACATATATTGATTCATTAACG
66 GCCACAGTTACATATATTGATTCATTAACA
16185826 TGGTGCTAAGTGGATATACCA
1 TGGTGCTAAGTGGATATACCA
16185847 TGGTTAAACA
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 111 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (95 bp):
TGGTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATAT
GCCACAGTTACATATATTGATTCATTAACA
Found at i:16185877 original size:38 final size:38
Alignment explanation
Indices: 16185821--16185897 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
16185811 ATTGATTCAT
* *
16185821 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
16185859 TAACATGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
16185897 T
1 T
16185898 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:16189039 original size:46 final size:46
Alignment explanation
Indices: 16188892--16189053 Score: 157
Period size: 46 Copynumber: 3.5 Consensus size: 46
16188882 ATCCGAACTC
* * * * * *
16188892 GTTGAGTCCGAGTTCACCTATGGATGTGAATGTCCAAACTCGTTGA
1 GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
*** * * * *
16188938 GTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGCATCCGAGCTCGTTGA
1 GTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC--CCGAGCTCGTTGA
*
16188985 GTTGAGTCCGAGTTCAGTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
16189031 GTTGAGTCCGAGTTCACTTATGG
1 GTTGAGTCCGAGTTCACTTATGG
16189054 GCGGGTTACA
Statistics
Matches: 93, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 56 0.60
47 32 0.34
48 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
Found at i:16192713 original size:42 final size:43
Alignment explanation
Indices: 16192653--16192745 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
16192643 GATTTACGTA
* ** * *
16192653 TAAGACCATGTCTGGGACATCGGCATC-ATATCGGATTTCATG
1 TAAGACCATGTCTAGGACAGAGGCATCGATATCGAATTACATG
* *
16192695 TAAGACCCTGTCTAGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTAGGACAGAGGCATCGATATCGAATTACATG
16192738 TAAGACCA
1 TAAGACCA
16192746 CGTCCGGGAC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 23 0.55
43 19 0.45
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
TAAGACCATGTCTAGGACAGAGGCATCGATATCGAATTACATG
Found at i:16203429 original size:48 final size:46
Alignment explanation
Indices: 16203327--16203429 Score: 127
Period size: 46 Copynumber: 2.2 Consensus size: 46
16203317 GACAGGACAG
* * *
16203327 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTAGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTAGA
* *
16203373 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATT-GTA
1 GACAGGAATGAGCCATGTAAGCCCATA-T-CAGATATATGGCATTAG-A
16203421 GACAGGAAT
1 GACAGGAAT
16203430 AATTCATGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 25 0.51
47 2 0.04
48 22 0.45
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTAGA
Found at i:16208927 original size:79 final size:81
Alignment explanation
Indices: 16208791--16208975 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
16208781 TTGAATGATG
* *
16208791 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
16208855 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
16208870 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
16208932 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
16208950 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
16208976 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:16208989 original size:40 final size:40
Alignment explanation
Indices: 16208792--16208975 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
16208782 TGAATGATGT
* * * *
16208792 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
16208832 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
16208872 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
16208910 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
16208951 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
16208976 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:16208997 original size:79 final size:79
Alignment explanation
Indices: 16208844--16208998 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
16208834 GGACTAAGAT
* * **
16208844 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
16208909 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
16208923 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
16208986 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
16208999 ATTCGAAGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:16212926 original size:47 final size:47
Alignment explanation
Indices: 16212815--16213079 Score: 404
Period size: 47 Copynumber: 5.6 Consensus size: 47
16212805 TACGTGTAAT
* ** * * *
16212815 GTGGTGTTAAGTGGATATACCACAATTACACATATTTATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT-TAAC
*
16212863 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
*
16212910 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* * *
16212957 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT-TAAC
*
16213005 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
16213052 GTGGTGCTAAGTGGATATACCACGGTTA
1 GTGGTGCTAAGTGGATATACCACGGTTA
16213080 AACATGTAGC
Statistics
Matches: 200, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
47 121 0.61
48 79 0.40
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
Found at i:16213009 original size:95 final size:95
Alignment explanation
Indices: 16212804--16213084 Score: 420
Period size: 95 Copynumber: 3.0 Consensus size: 95
16212794 TACCACGGTT
* * * * ** * * *
16212804 ATACGTGTAATGTGGTGTTAAGTGGATATACCACAATTACACATATTTATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAACGTGGTG
* *
16212869 CTAAGTGGATATGCCACGGTTACATATATTG
65 CTAAGTGGATATACCACGGTTACACATATTG
*
16212900 ATTCAT-TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGC
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGC
*
16212964 TAAGTGGATATACCACGATTACACATATTG
66 TAAGTGGATATACCACGGTTACACATATTG
16212994 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGC
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGC
*
16213059 TAAGTGGATATACCACGGTTAAACAT
66 TAAGTGGATATACCACGGTTACACAT
16213085 GTAGCATGGT
Statistics
Matches: 168, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
94 43 0.26
95 121 0.72
96 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (95 bp):
ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGC
TAAGTGGATATACCACGGTTACACATATTG
Found at i:16213075 original size:142 final size:142
Alignment explanation
Indices: 16212815--16213079 Score: 494
Period size: 142 Copynumber: 1.9 Consensus size: 142
16212805 TACGTGTAAT
* *
16212815 GTGGTGTTAAGTGGATATACCACAATTACACATATTTATACATGTAACGTGGTGCTAAGTGGATA
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATA
*
16212880 TGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATAT
66 TGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTACATATAT
16212945 TGATTCATTAAC
131 TGATTCATTAAC
*
16212957 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATA
1 GTGGTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATA
16213022 TGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA
66 TGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA
16213080 AACATGTAGC
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
142 119 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (142 bp):
GTGGTGCTAAGTGGATATACCACAATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATA
TGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTACATATAT
TGATTCATTAAC
Found at i:16215184 original size:37 final size:37
Alignment explanation
Indices: 16215134--16215282 Score: 219
Period size: 37 Copynumber: 4.0 Consensus size: 37
16215124 ACCTTTAGCT
* *
16215134 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
16215171 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
16215208 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
* * *
16215245 CGGACATACTCTCCACAC-ATAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGA-AGTCATCGGGTCTTACC
16215282 C
1 C
16215283 AGAATATATT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:16215628 original size:25 final size:25
Alignment explanation
Indices: 16215549--16215628 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
16215539 ATTCGGCCTT
*
16215549 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
16215574 ATCACAT-T-GGCCA--TTCGGC-CTC
1 ATCACATATATG-CATGTTC-ACATTC
16215596 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
16215621 ATCACATA
1 ATCACATA
16215629 GGCCATTCGG
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 5 0.12
25 20 0.49
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:16215881 original size:22 final size:22
Alignment explanation
Indices: 16215856--16215932 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
16215846 ATTCACATTC
16215856 ATCACATAGGCCATTTGGCCTT
1 ATCACATAGGCCATTTGGCCTT
** ** *
16215878 ATCACATATATACACA-TTCACATT
1 ATCAC--ATAGGC-CATTTGGCCTT
16215902 CATCACATAGGCCATTTGGCCTT
1 -ATCACATAGGCCATTTGGCCTT
16215925 ATCACATA
1 ATCACATA
16215933 TATACACATT
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 9 0.22
24 9 0.22
25 7 0.17
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.31
Consensus pattern (22 bp):
ATCACATAGGCCATTTGGCCTT
Found at i:16215957 original size:25 final size:25
Alignment explanation
Indices: 16215831--16215957 Score: 81
Period size: 25 Copynumber: 5.3 Consensus size: 25
16215821 ATTCGGCCTT
*
16215831 ATCACATGTATACACATTCACATTC
1 ATCACATATATACACATTCACATTC
** ** *
16215856 ATCAC--ATAGGC-CATTTGGCCTT-
1 ATCACATATATACACA-TTCACATTC
16215878 ATCACATATATACACATTCACATTC
1 ATCACATATATACACATTCACATTC
** ** *
16215903 ATCAC--ATAGGC-CATTTGGCCTT-
1 ATCACATATATACACA-TTCACATTC
16215925 ATCACATATATACACATTCACATTC
1 ATCACATATATACACATTCACATTC
16215950 ATCACATA
1 ATCACATA
16215958 AAATCCTAAA
Statistics
Matches: 71, Mismatches: 21, Indels: 20
0.63 0.19 0.18
Matches are distributed among these distances:
22 14 0.20
23 17 0.24
24 18 0.25
25 22 0.31
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:16215957 original size:47 final size:47
Alignment explanation
Indices: 16215501--16215956 Score: 651
Period size: 47 Copynumber: 9.7 Consensus size: 47
16215491 ATTGGCCGAA
* *
16215501 TATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
*
16215548 TATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* *
16215595 CATCACATATATGCATGTTCACATTCATCACATAGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* *
16215642 TATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* *
16215689 TATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* * * *
16215736 TATCATATATATACATGTTCATATTCACCACATTGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* *
16215783 TATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* * ** * *
16215830 TATCACATGTATACACATTCACATTCATCACATAGGCCATTTGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* ** * *
16215877 TATCACATATATACACATTCACATTCATCACATAGGCCATTTGGCCT
1 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* **
16215924 TATCACATATATACACATTCACATTCATCACAT
1 TATCACATATATGCATGTTCACATTCATCACAT
16215957 AAAATCCTAA
Statistics
Matches: 376, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 376 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
Found at i:16221493 original size:39 final size:40
Alignment explanation
Indices: 16221392--16221548 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
16221382 TCGAATGATG
* *
16221392 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
16221431 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16221472 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16221511 TCCGGGTTAAGTCCCGAAAGCATTTGTGCGAGTTACTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
16221549 TAACCGGGTT
Statistics
Matches: 103, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
39 35 0.34
40 58 0.56
41 10 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Done.