Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 64 of 253
Found at i:18256269 original size:79 final size:80
Alignment explanation
Indices: 18256107--18256282 Score: 196
Period size: 79 Copynumber: 2.2 Consensus size: 80
18256097 AGATACAAGT
* * * *
18256107 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
18256172 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
18256187 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
18256251 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
18256266 TCC-GGTTAAATCCCGAA
1 TCCGGGTTAAGTCCCGAA
18256283 ACGTGATTTG
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.17
79 48 0.59
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:18264078 original size:39 final size:39
Alignment explanation
Indices: 18263908--18264131 Score: 222
Period size: 40 Copynumber: 5.7 Consensus size: 39
18263898 TTGAATGCTG
* * *
18263908 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
18263948 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAA-A
* * *
18263988 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* * *
18264028 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* *
18264067 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* *
18264106 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18264132 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 7 0.04
39 54 0.35
40 84 0.54
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:18264153 original size:78 final size:79
Alignment explanation
Indices: 18263988--18264164 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 79
18263978 AGATACAAGT
* * * *
18263988 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
18264053 GTGCGAGTATTAAA
66 GAACGAGGACTAAA
* * * *
18264067 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
18264131 GAACGAGGAGCTATA
66 GAACGAGGA-CTAAA
*
18264146 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
18264165 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 58 0.70
79 25 0.30
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGACTAAA
Found at i:18268445 original size:39 final size:39
Alignment explanation
Indices: 18268346--18268458 Score: 153
Period size: 39 Copynumber: 3.0 Consensus size: 39
18268336 CCGAAGATTT
* * *
18268346 GTGCGAATACTAATTCC-GGTTAAG-CCCGAA-GCCTTT
1 GTGCGAATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
18268382 GTGCGAATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 GTGCGAATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
18268421 GTGCGAGTA-TAAATCCGGGCTTAAGTCCCGAAGGCATT
1 GTGCGAATACTAAATCCGGG-TTAAGTCCCGAAGGCATT
18268459 GTGGTTACTA
Statistics
Matches: 69, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
36 16 0.23
37 7 0.10
38 16 0.23
39 30 0.43
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
GTGCGAATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
Found at i:18273021 original size:39 final size:41
Alignment explanation
Indices: 18272921--18273104 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
18272911 TCGAATGATG
* * *
18272921 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
18272960 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
18273000 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
18273039 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
18273079 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18273105 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
39 46 0.36
40 72 0.57
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:18273056 original size:79 final size:80
Alignment explanation
Indices: 18272921--18273102 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
18272911 TCGAATGATG
* * *
18272921 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
18272985 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
18272999 TTCCGGGCTAAGCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
18273062 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
18273079 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATT
18273103 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 69 0.78
80 19 0.21
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:18273126 original size:79 final size:79
Alignment explanation
Indices: 18272973--18273137 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
18272963 GGACTAAGAT
* **
18272973 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
18273038 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
18273052 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
18273115 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
18273131 CCGAAGG
1 CCGAAGG
18273138 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:18275733 original size:26 final size:26
Alignment explanation
Indices: 18275694--18275745 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18275684 GGCTTACAAG
**
18275694 ACAGCATATGAGACACCTTTAGGGAT
1 ACAGCATACAAGACACCTTTAGGGAT
18275720 ACAGCATACAAGACACCTTTAGGGAT
1 ACAGCATACAAGACACCTTTAGGGAT
18275746 GTCACCCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
ACAGCATACAAGACACCTTTAGGGAT
Found at i:18282659 original size:69 final size:70
Alignment explanation
Indices: 18282527--18282659 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
18282517 TAGTTTATTA
* * * *
18282527 CTAATTAATTTGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
18282592 CTTAG
66 CTTAG
*
18282597 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
18282660 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:18283470 original size:39 final size:39
Alignment explanation
Indices: 18283418--18283767 Score: 380
Period size: 40 Copynumber: 8.9 Consensus size: 39
18283408 ATTTGATGTA
*
18283418 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* *
18283457 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
18283496 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTG
* *
18283536 TATCCGGGCTTAAAGACCCGCAGGCGTT-GTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGC-TTCGTGCTGGAATTG
* *
18283576 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * * *
18283615 TATCAGGGCTTAAAGACCCACAGGCTTTGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
18283655 TATCTGGGCTTAAAGACCCGCAGACTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
18283695 TATCCGGACTTAAGATCCGTAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
* * * *
18283734 TATTCGGACTTAAGGTCCGTAGGCTTCGTACTGG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGG
18283768 TACTATATCC
Statistics
Matches: 271, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
38 2 0.01
39 132 0.49
40 135 0.50
41 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTG
Found at i:18283648 original size:119 final size:119
Alignment explanation
Indices: 18283416--18283728 Score: 477
Period size: 119 Copynumber: 2.6 Consensus size: 119
18283406 ATATTTGATG
* ** *
18283416 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAG
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGG
* *
18283480 CTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAAT
66 CTTCGTGCTGGAATTGTATCAGGGCTTAAAGACCCACAGGCTATATGCTGGAAT
18283534 TATATCCGGGCTTAAAGACCCGCAGGCGTT-GTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
1 TATATCCGGGCTTAAAGACCCGCAGGC-TTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
* * *
18283598 GCTTCGTGCTGGAATTTTATCAGGGCTTAAAGACCCACAGGCTTTGTGCTGGAAT
65 GCTTCGTGCTGGAATTGTATCAGGGCTTAAAGACCCACAGGCTATATGCTGGAAT
* * * * *
18283653 TGTATCTGGGCTTAAAGACCCGCAGACTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGTAGG
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGG
18283718 CTTCGTGCTGG
66 CTTCGTGCTGG
18283729 TACTATATTC
Statistics
Matches: 178, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
118 14 0.08
119 162 0.91
120 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (119 bp):
TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGG
CTTCGTGCTGGAATTGTATCAGGGCTTAAAGACCCACAGGCTATATGCTGGAAT
Found at i:18283768 original size:39 final size:38
Alignment explanation
Indices: 18283699--18283799 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 38
18283689 GAATTGTATC
* *
18283699 CGGACTTAAGATCCGTAGGCTTCGTGCTGGTACTATATT
1 CGGACTTAAGGTCCGTAGGCTTCGTACTGGTACTATA-T
18283738 CGGACTTAAGGTCCGTAGGCTTCGTACTGGTACTATAT
1 CGGACTTAAGGTCCGTAGGCTTCGTACTGGTACTATAT
* *
18283776 CCGAGCTTAAAGTCCCGTAGGCTT
1 CGGA-CTTAAGGT-CCGTAGGCTT
18283800 TGTGTTGGTG
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
38 4 0.07
39 42 0.75
40 10 0.18
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.31
Consensus pattern (38 bp):
CGGACTTAAGGTCCGTAGGCTTCGTACTGGTACTATAT
Found at i:18283794 original size:79 final size:79
Alignment explanation
Indices: 18283422--18283803 Score: 385
Period size: 79 Copynumber: 4.8 Consensus size: 79
18283412 GATGTATATC
* * ** * *
18283422 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCAAGCTTCGT
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGT
*
18283486 GCTGGAATTGTATC
66 GCTGGAATTGTATT
* ** * *
18283500 CGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCGTT
1 CGGACTT-AAGGTCCGCAGGCT-TCGTGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTT
*
18283564 GTGCTGGAATTGTATC
64 GTGCTGGAATTGTATT
* * *
18283580 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTTTATCAGGGCTTAAAGACCCACAGGCTTTGT
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGT
18283645 GCTGGAATTGTA-T
66 GCTGGAATTGTATT
* ** * * * * * *
18283658 CTGGGCTTAAAGACCCGCAGACTTCGTGCTGGAATTGTATCCGGACTT-AAGATCCGTAGGCTTC
1 C-GGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTT
* * *
18283722 GTGCTGGTACTATATT
64 GTGCTGGAATTGTATT
* * * * * * *
18283738 CGGACTTAAGGTCCGTAGGCTTCGTACTGGTACTATATCCGAGCTTAAAGTCCCGTAGGCTTTGT
1 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGT
18283803 G
66 G
18283804 TTGGTGATTG
Statistics
Matches: 248, Mismatches: 48, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
78 37 0.15
79 142 0.57
80 69 0.28
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (79 bp):
CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGT
GCTGGAATTGTATT
Found at i:18287171 original size:47 final size:47
Alignment explanation
Indices: 18287069--18287191 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 47
18287059 GATAAGTACC
* * ** * *
18287069 TATACCATGG-CCGTAGCCAAATCAAGGTAACTTATCTCGGAGTACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACAAAATACA
* *
18287115 TATATCATGGCCCGTAGCCAAATCAAGGTAACTCCTCACAAAATACA
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACAAAATACA
* *
18287162 TATACCATGGCCCATAGCCACATCAAGGTA
1 TATACCATGGCCCGTAGCCAAATCAAGGTA
18287192 TTTAATCGCA
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
46 9 0.14
47 56 0.86
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACAAAATACA
Found at i:18290264 original size:40 final size:40
Alignment explanation
Indices: 18290209--18290413 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
18290199 CGGATGATAA
*
18290209 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
18290249 CGAAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
*
18290289 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
18290329 CGAAGGCATTTGTGCGAGCT-ACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCC
* * *
18290369 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCC
18290408 CGAAGG
1 CGAAGG
18290414 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 16 0.10
40 137 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:18294043 original size:79 final size:81
Alignment explanation
Indices: 18293922--18294104 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
18293912 TACTCGTTCA
* * *
18293922 AATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
18293985 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
18294002 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
18294065 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
18294081 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
18294105 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:18294104 original size:40 final size:40
Alignment explanation
Indices: 18293901--18294104 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
18293891 CGGAATTTAA
** *
18293901 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
18293941 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18293981 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
18294020 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18294060 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18294100 CCGGA
1 CCGGA
18294105 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18300922 original size:39 final size:39
Alignment explanation
Indices: 18300851--18301033 Score: 201
Period size: 39 Copynumber: 4.6 Consensus size: 39
18300841 AGCTACTCGT
* *
18300851 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
18300891 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
18300930 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
18300969 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
18301010 CAAA-GCC-TCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
18301034 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 81 0.66
40 34 0.28
41 8 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:18301021 original size:78 final size:79
Alignment explanation
Indices: 18300851--18301033 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 79
18300841 AGCTACTCGT
* * *
18300851 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
18300915 ATTTAGTAACTCGCAC
64 ATATAGTAACTAGCAC
* **
18300931 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGA
* *
18300995 TATGGTCACTTAGCA-
65 TATAGTAAC-TAGCAC
18301010 CAAAGCC-TCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
18301034 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
78 39 0.44
79 42 0.48
80 7 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
ATAGTAACTAGCAC
Found at i:18308188 original size:40 final size:40
Alignment explanation
Indices: 18308004--18308188 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
18307994 GCTACTAGTT
*
18308004 CAAATGCCTTCGGGACATAG-CC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCA
* *
18308043 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
18308083 CCAAATGCCTTCGGG-CTTAGCCCGTA-ATTAGTAACTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
18308123 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
18308164 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18308189 CATCATTCGA
Statistics
Matches: 125, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.23
40 66 0.53
41 28 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:18315735 original size:40 final size:40
Alignment explanation
Indices: 18315665--18315789 Score: 157
Period size: 40 Copynumber: 3.1 Consensus size: 40
18315655 CGGATGATAA
* *
18315665 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCC
*
18315705 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCC
* * *
18315745 CGAAGGCATTTGAGCAAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCAAGTTA-CTATATCCGGGCTAAGTCC
18315784 CGAAGG
1 CGAAGG
18315790 TACTTGGTTT
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
39 16 0.21
40 60 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCC
Found at i:18317915 original size:11 final size:10
Alignment explanation
Indices: 18317873--18317919 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
18317863 TTCTCAATTC
18317873 ATCA-ACCAA
1 ATCATACCAA
18317882 ATCATACCAA
1 ATCATACCAA
*
18317892 ATCTAAACCAA
1 ATC-ATACCAA
18317903 AGTCATACCAA
1 A-TCATACCAA
*
18317914 AGCATA
1 ATCATA
18317920 TGTTTCAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 12 0.38
11 14 0.44
12 2 0.06
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:18318723 original size:43 final size:42
Alignment explanation
Indices: 18318674--18318813 Score: 122
Period size: 42 Copynumber: 3.3 Consensus size: 42
18318664 CCCAGACGTA
* * * *
18318674 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATA-CGATCCCAATGTCCCAGACAGG
* * *
18318717 GTCTTACACGAAATCAAGTACGATCCCAATGTCCCAGGCATG
1 GTCTTACACGAAATCAAATACGATCCCAATGTCCCAGACAGG
* ** *
18318759 GTCTTACACATAAATCATAAGT-CGATGTCAATGTCCTAGAC-GTG
1 GTCTTACAC-GAAATCA-AA-TACGATCCCAATGTCCCAGACAG-G
18318803 GTCTTACACGA
1 GTCTTACACGA
18318814 TAACACATAT
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.35
43 24 0.31
44 26 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GTCTTACACGAAATCAAATACGATCCCAATGTCCCAGACAGG
Found at i:18318763 original size:42 final size:42
Alignment explanation
Indices: 18318662--18318813 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 42
18318652 CAATGACAAC
* * * * * *
18318662 GTCCCAGACGTAGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCAAGTA-CGATGCCAAT
* *
18318705 GTCCCAGACAGGGTCTTACACGAAATCAAGTACGATCCCAAT
1 GTCCCAGACATGGTCTTACACGAAATCAAGTACGATGCCAAT
* * *
18318747 GTCCCAGGCATGGTCTTACACATAAATCATAAGT-CGATGTCAAT
1 GTCCCAGACATGGTCTTACAC-GAAATC--AAGTACGATGCCAAT
* *
18318791 GTCCTAGACGTGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACGA
18318814 TAACACATAT
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
42 27 0.30
43 32 0.36
44 26 0.29
45 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAGTACGATGCCAAT
Found at i:18320416 original size:13 final size:13
Alignment explanation
Indices: 18320395--18320425 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
18320385 ACACACGCCT
*
18320395 GTGTCCCTAACCC
1 GTGTACCTAACCC
18320408 GTGTACCTAACCC
1 GTGTACCTAACCC
18320421 GTGTA
1 GTGTA
18320426 ACTCTCTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.35, G:0.19, T:0.26
Consensus pattern (13 bp):
GTGTACCTAACCC
Found at i:18322154 original size:41 final size:42
Alignment explanation
Indices: 18322039--18322196 Score: 183
Period size: 41 Copynumber: 3.8 Consensus size: 42
18322029 TACCAATGTC
* *
18322039 ATATCCCAGATATGGTCTTACATGTAATCTCATATCAATGCCA
1 ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATG-CA
** * * *
18322082 ATAGACCAGCTATGGTCTTACACGAAATCTCATATCGATGTA
1 ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCA
* * * *
18322124 ATATCCTAGATAT-GTCTTACACGTAGTCTCATATTGATGCC
1 ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCA
* *
18322165 ATATCCCAGATATGGTCTTACACATAGTCTCA
1 ATATCCCAGATATGGTCTTACACGTAATCTCA
18322197 ATAACCCTAA
Statistics
Matches: 96, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
41 35 0.36
42 27 0.28
43 34 0.35
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCA
Found at i:18326395 original size:40 final size:40
Alignment explanation
Indices: 18326341--18326534 Score: 318
Period size: 40 Copynumber: 4.9 Consensus size: 40
18326331 GATATAGCTT
*
18326341 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
18326381 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
18326421 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
18326461 CTCGGACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
18326501 CTCGCACAAATGCCTTCGGG-CTTAGCCCAGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
18326535 CAATCCGAAT
Statistics
Matches: 144, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 12 0.08
40 132 0.92
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:18326450 original size:80 final size:80
Alignment explanation
Indices: 18326314--18326534 Score: 322
Period size: 80 Copynumber: 2.8 Consensus size: 80
18326304 AAGCCAAGTA
** * *
18326314 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
18326377 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
18326393 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
18326458 TAACTCGGACAAATG
66 TAACTCGCACAAATG
*
18326473 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
18326535 CAATCCGAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 25 0.20
80 102 0.80
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:18334433 original size:40 final size:40
Alignment explanation
Indices: 18334379--18334572 Score: 327
Period size: 40 Copynumber: 4.9 Consensus size: 40
18334369 GATATAGCTT
*
18334379 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
18334419 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
18334459 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
18334499 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
18334539 CTCGCACAAATGTCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
18334573 CAATCCGAAT
Statistics
Matches: 146, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.09
40 133 0.91
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:18334488 original size:80 final size:80
Alignment explanation
Indices: 18334352--18334572 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 80
18334342 AAGCCAAGTA
** * *
18334352 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
18334415 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
18334431 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
18334496 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
18334511 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGTCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
18334573 CAATCCGAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 26 0.20
80 102 0.80
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:18344091 original size:79 final size:81
Alignment explanation
Indices: 18343982--18344164 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
18343972 TACTCGTTCA
* *
18343982 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
18344045 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
18344062 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
18344125 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
18344141 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
18344165 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:18344164 original size:40 final size:40
Alignment explanation
Indices: 18343961--18344164 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
18343951 CGGAATTTAA
** *
18343961 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18344001 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18344041 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
18344080 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18344120 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18344160 CCGGA
1 CCGGA
18344165 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18351581 original size:40 final size:40
Alignment explanation
Indices: 18351532--18351735 Score: 175
Period size: 40 Copynumber: 5.1 Consensus size: 40
18351522 CAGAATTTAA
** *
18351532 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
18351572 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * *
18351612 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * **
18351651 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * * *
18351691 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAAC
18351731 CCGGA
1 CCGGA
18351736 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:18351676 original size:39 final size:39
Alignment explanation
Indices: 18351551--18351733 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
18351541 GCTACTCGTT
* *
18351551 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
18351591 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* *
18351631 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* * * * *
18351670 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
18351711 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
18351734 GACATCATTC
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 35 0.29
40 69 0.57
41 16 0.13
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:18351695 original size:79 final size:80
Alignment explanation
Indices: 18351553--18351733 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
18351543 TACTCGTTCA
* **
18351553 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
18351618 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
**
18351633 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
18351695 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
18351712 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
18351734 GACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 26 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:18357324 original size:15 final size:15
Alignment explanation
Indices: 18357304--18357343 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
18357294 TGTGGAAATA
18357304 TGACATGAAAGAATG
1 TGACATGAAAGAATG
18357319 TGACATGAAAGAATG
1 TGACATGAAAGAATG
*
18357334 TTACATGAAA
1 TGACATGAAA
18357344 TGCAAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.47, C:0.07, G:0.23, T:0.23
Consensus pattern (15 bp):
TGACATGAAAGAATG
Found at i:18357828 original size:49 final size:50
Alignment explanation
Indices: 18357693--18357828 Score: 172
Period size: 50 Copynumber: 2.7 Consensus size: 50
18357683 ATGATCTATT
* **
18357693 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
1 GTGAGGTCGTATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
18357743 GTGAGGTCACGT-T-TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-
1 GTGAGGT--CGTATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* *
18357793 GT-TGGTCGTATGTGTAGTACTAAGTACAGGCTACTA
1 GTGAGGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
18357829 TGCATACCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
47 3 0.04
48 1 0.01
49 26 0.34
50 42 0.55
51 2 0.03
52 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (50 bp):
GTGAGGTCGTATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
Found at i:18372146 original size:12 final size:12
Alignment explanation
Indices: 18372129--18372193 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
18372119 AAGAAACATT
18372129 ATCAAAA-CTAGA
1 ATCAAAATC-AGA
*
18372141 ATCAAAATGAGA
1 ATCAAAATCAGA
*
18372153 ATCAGAATCAGA
1 ATCAAAATCAGA
* *
18372165 ATC-AAGTGACAAA
1 ATCAAAAT--CAGA
18372178 ATCAAAATCAGA
1 ATCAAAATCAGA
18372190 ATCA
1 ATCA
18372194 GAATTAGGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 2 0.05
12 30 0.73
13 6 0.15
14 3 0.07
ACGTcount: A:0.55, C:0.15, G:0.12, T:0.17
Consensus pattern (12 bp):
ATCAAAATCAGA
Found at i:18372161 original size:6 final size:6
Alignment explanation
Indices: 18372138--18372247 Score: 64
Period size: 6 Copynumber: 17.8 Consensus size: 6
18372128 TATCAAAACT
* * * * *
18372138 AGAATC AAAATG AGAATC AGAATC AGAATC A-AGTGAC AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
18372187 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATC AGGTAAT- AGAATC
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC
*
18372237 AGAATT AGAAT
1 AGAATC AGAAT
18372248 ATGAATGCAA
Statistics
Matches: 81, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
5 6 0.07
6 64 0.79
7 6 0.07
8 5 0.06
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:18372187 original size:31 final size:31
Alignment explanation
Indices: 18372143--18372225 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 31
18372133 AAACTAGAAT
*
18372143 CAAAATGAGAATCAGAATCAGAATCAAGTGA
1 CAAAATCAGAATCAGAATCAGAATCAAGTGA
* * *
18372174 CAAAATCAAAATCAGAATCAGAATTAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAAGTGA
* *
18372205 CAGAATCAGAATCAGTATCAG
1 CAAAATCAGAATCAGAATCAG
18372226 GTAATAGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (31 bp):
CAAAATCAGAATCAGAATCAGAATCAAGTGA
Found at i:18372211 original size:25 final size:25
Alignment explanation
Indices: 18372183--18372247 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
18372173 ACAAAATCAA
* *
18372183 AATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
* *
18372208 AATCAGAATCAGTATCAGGTAATAG
1 AATCAGAATCAGAATCAGGTAACAG
*
18372233 AATCAGAATTAGAAT
1 AATCAGAATCAGAAT
18372248 ATGAATGCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:18373170 original size:27 final size:27
Alignment explanation
Indices: 18373138--18373229 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
18373128 GGGGTAAAAT
* *
18373138 GGTAATTTTACCCCA-AGAGGGTATCTC
1 GGTAATTTTACCCTACAG-GGGTATTTC
* * *
18373165 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
18373192 GGTAATTTTACCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
18373219 GGTAATTTTAC
1 GGTAATTTTAC
18373230 AAATTAGGGG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:18373214 original size:54 final size:54
Alignment explanation
Indices: 18373138--18373256 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 54
18373128 GGGGTAAAAT
**
18373138 GGTAATTTTACCCCAAGAGGGTATCTCGATAATTCTAC-CCTATAGGGGTATTTC
1 GGTAATTTTACCCCAAGAGGGTATCTCGATAATTCTACAAAT-TAGGGGTATTTC
** * * * *
18373192 GGTAATTTTACCTTACAG-GGGTATTTCGGTAATTTTACAAATTAGGGGTATTTT
1 GGTAATTTTACCCCA-AGAGGGTATCTCGATAATTCTACAAATTAGGGGTATTTC
*
18373246 TGTAATTTTAC
1 GGTAATTTTAC
18373257 AAATCAGGGA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 51 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTAATTTTACCCCAAGAGGGTATCTCGATAATTCTACAAATTAGGGGTATTTC
Found at i:18373238 original size:27 final size:27
Alignment explanation
Indices: 18373180--18373334 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
18373170 TTCTACCCTA
* *
18373180 TAGGGGTATTTCGGTAATTTTAC--CT
1 TAGGGGTATTTTGGTAATTTTACAAAT
*
18373205 TACAGGGGTATTTCGGTAATTTTACAAAT
1 T--AGGGGTATTTTGGTAATTTTACAAAT
*
18373234 TAGGGGTATTTTTGTAATTTTACAAAT
1 TAGGGGTATTTTGGTAATTTTACAAAT
* * * *
18373261 CAGGGATATTTTGGTAATTTTGCTAAT
1 TAGGGGTATTTTGGTAATTTTACAAAT
* * *
18373288 TAAGGGTATTTTGGTAATTTTGCTAA-
1 TAGGGGTATTTTGGTAATTTTACAAAT
*
18373314 TCGAGGGTATTTTGGTAATTT
1 TAG-GGGTATTTTGGTAATTT
18373335 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 108 0.96
29 2 0.02
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.45
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAT
Found at i:18373265 original size:54 final size:53
Alignment explanation
Indices: 18373180--18373334 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 53
18373170 TTCTACCCTA
* ** *
18373180 TAGGGGTATTTCGGTAATTTTACCTTACAGGGGTATTTCGGTAATTTTACAAAT
1 TAGGGGTATTTTGGTAATTTTACAAT-CAGGGGTATTTTGGTAATTTTACAAAT
* * * *
18373234 TAGGGGTATTTTTGTAATTTTACAAATCAGGGATATTTTGGTAATTTTGCTAAT
1 TAGGGGTATTTTGGTAATTTTAC-AATCAGGGGTATTTTGGTAATTTTACAAAT
* *
18373288 TAAGGGTATTTTGGTAATTTTGCTAATC-GAGGGTATTTTGGTAATTT
1 TAGGGGTATTTTGGTAATTTTAC-AATCAG-GGGTATTTTGGTAATTT
18373335 GGTAAACTAA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 84 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.45
Consensus pattern (53 bp):
TAGGGGTATTTTGGTAATTTTACAATCAGGGGTATTTTGGTAATTTTACAAAT
Found at i:18381910 original size:8 final size:8
Alignment explanation
Indices: 18381899--18381926 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
18381889 GGCAAATCTT
18381899 GAAATGCC
1 GAAATGCC
18381907 GAAATGCC
1 GAAATGCC
18381915 GAAATGCC
1 GAAATGCC
18381923 GAAA
1 GAAA
18381927 AGCCAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.25, T:0.11
Consensus pattern (8 bp):
GAAATGCC
Found at i:18383480 original size:46 final size:46
Alignment explanation
Indices: 18383413--18383506 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
18383403 TTATTTTAAA
*
18383413 GAAGGGTTTTCAATGAAAACAAGGTTTTCGAAAAACACTTCAATGT
1 GAAGGGTTTTCAATGAAAACAAGGTTTTCAAAAAACACTTCAATGT
18383459 GAAGGGTTTTCAATGAAAACAAGGTTTTCAAAAAACACTTCAATGT
1 GAAGGGTTTTCAATGAAAACAAGGTTTTCAAAAAACACTTCAATGT
18383505 GA
1 GA
18383507 CACGCCAGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (46 bp):
GAAGGGTTTTCAATGAAAACAAGGTTTTCAAAAAACACTTCAATGT
Found at i:18383495 original size:16 final size:17
Alignment explanation
Indices: 18383463--18383495 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
18383453 CAATGTGAAG
18383463 GGTTTTCAATGAAAACAA
1 GGTTTTCAA-GAAAACAA
18383481 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
18383496 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAA
Found at i:18389572 original size:92 final size:94
Alignment explanation
Indices: 18389459--18389768 Score: 299
Period size: 97 Copynumber: 3.3 Consensus size: 94
18389449 TATGTGTGCT
* * *
18389459 AGTGTAAGGCATGTCTAGGACATGCATTGGCCAC-ATTATGAGAGCCAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCACGATTATGAAAGCCAGTGTAAGACATGTCTGG
* *
18389523 GACAT-GCATCGACATTAAGACGAGAGCT
66 GACATGGCATCGACATTAAGACGACAGCC
** * * * *
18389551 AGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGATAT-ACAAGCTAGTGTAAAACCTGTC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCA-CGA-TTATGA-AAGCCAGTGTAAGACATGTC
* * *
18389614 TGGGACATGGCATCGGCACTGACAGATGACAGCC
63 TGGGACATGGCATCGACA-TTA-AGACGACAGCC
* * * * *
18389648 AGTGTAAGACTTGTTTGGGACACGACATTGGCCTCGATATATGAAAGTCAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACATG-CATTGGCCACGAT-TATGAAAGCCAGTGTAAGACATGTCT
* *
18389713 GGGACATGGCATTGACTTTAATG-CG-CTAGCC
64 GGGACATGGCATCGACATTAA-GACGAC-AGCC
18389744 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
18389769 GCGTCAGCAT
Statistics
Matches: 171, Mismatches: 33, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
91 2 0.01
92 27 0.16
93 2 0.01
94 27 0.16
95 9 0.05
96 17 0.10
97 44 0.26
98 41 0.24
99 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCACGATTATGAAAGCCAGTGTAAGACATGTCTGG
GACATGGCATCGACATTAAGACGACAGCC
Found at i:18389667 original size:49 final size:48
Alignment explanation
Indices: 18389496--18389724 Score: 198
Period size: 49 Copynumber: 4.8 Consensus size: 48
18389486 TGGCCACATT
* * *
18389496 ATGAGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGACAT-TAAG
1 ATGACAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAAG
* * * *
18389542 ACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCATCG-AG
1 ATGACAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAAG
* * * *
18389588 ATATACAAGCTAGTGTAAAACCTGTCTGGGACATGGCATCGGCA-CTGACAG
1 AT-GAC-AGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATC-GA-AG
* * * * * * *
18389639 ATGACAGCCAGTGTAAGACTTGTTTGGGACACGACATTGGCCTCGATAT
1 ATGACAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGA-AG
* *
18389688 ATGAAAGTCAGTGTAAGACATGTCTGGGACATGGCAT
1 ATGACAGCCAGTGTAAGACATGTCTGGGACATGGCAT
18389725 TGACTTTAAT
Statistics
Matches: 147, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
46 41 0.28
47 1 0.01
48 26 0.18
49 72 0.49
50 3 0.02
51 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
ATGACAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAAG
Found at i:18389717 original size:98 final size:94
Alignment explanation
Indices: 18389459--18389766 Score: 286
Period size: 98 Copynumber: 3.2 Consensus size: 94
18389449 TATGTGTGCT
* * * * *
18389459 AGTGTAAGGCATGTCTAGGACATGCATTGGCCAC-AT-TATGAGAGCCAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACACGCATTGGCCTCGATATATGAAAG-CAGTGTAAGACATGTCTG
* * *
18389522 GGACAT-GCATCGACATTAAGACGAGAGCT
65 GGACATGGCATCGACATGAAGACGACAGCC
* ** * * * *
18389551 AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATAT-ACAAGCTAGTGTAAAACCTGTCT
1 AGTGTAAGACATGTCTGGGACACGCATTGGCCTCGATATATGA-AAGC-AGTGTAAGACATGTCT
* *
18389615 GGGACATGGCATCGGCACTGACAGATGACAGCC
64 GGGACATGGCATCGACA-TGA-AGACGACAGCC
* *
18389648 AGTGTAAGACTTGTTTGGGACACGACATTGGCCTCGATATATGAAAGTCAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACACG-CATTGGCCTCGATATATGAAAG-CAGTGTAAGACATGTCT
* * *
18389713 GGGACATGGCATTGACTTTAATG-CG-CTAGCC
64 GGGACATGGCATCGACATGAA-GACGAC-AGCC
18389744 AGTGTAAGACCATGTCTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
18389767 TGGCGTCAGC
Statistics
Matches: 172, Mismatches: 31, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
92 28 0.16
93 3 0.02
94 26 0.15
95 9 0.05
96 17 0.10
97 43 0.25
98 44 0.26
99 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACACGCATTGGCCTCGATATATGAAAGCAGTGTAAGACATGTCTGG
GACATGGCATCGACATGAAGACGACAGCC
Found at i:18392178 original size:32 final size:31
Alignment explanation
Indices: 18392131--18392474 Score: 198
Period size: 32 Copynumber: 11.1 Consensus size: 31
18392121 TAAGATATTC
* * *
18392131 ATAACAAAAATTAATATAAACTAATAAAAATT
1 ATAATAAAAA-TAATAAAAACTTATAAAAATT
* *
18392163 ATACTAAAAAGTAATAAAAACTTATAAATATT
1 ATAATAAAAA-TAATAAAAACTTATAAAAATT
* * * *
18392195 ATAATAAATATAAT-AAATC-TA-ATAATTT
1 ATAATAAAAATAATAAAAACTTATAAAAATT
* *
18392223 ATAA-AAAATATTATATAAAA-TTATAAATATT
1 ATAATAAAA-ATAATA-AAAACTTATAAAAATT
* *
18392254 AT-A-AAAAAT-A-AAAAAC-GAAAAAAATT
1 ATAATAAAAATAATAAAAACTTATAAAAATT
* * * *
18392280 AAAAATAGGAAAATTATTAAAAAATCATAAAAATT
1 -ATAATA--AAAA-TAATAAAAACTTATAAAAATT
* * *
18392315 ATTAAAAATTAAAATTAATATAAACTTATAAATATT
1 A-T---AA-TAAAAATAATAAAAACTTATAAAAATT
*
18392351 ATAATAAAAAATAATAAAAACTTATAAATATT
1 ATAAT-AAAAATAATAAAAACTTATAAAAATT
*
18392383 ATAATAAAAAATAATAAAAACTTATAAATATT
1 ATAAT-AAAAATAATAAAAACTTATAAAAATT
* * *
18392415 ATAATAAATATAAT-AAATC-TA-ATAAA-T
1 ATAATAAAAATAATAAAAACTTATAAAAATT
* *
18392442 -T-ATAAAAATAATATAAACGTATAAAAATT
1 ATAATAAAAATAATAAAAACTTATAAAAATT
18392471 ATAA
1 ATAA
18392475 AAATCATAAA
Statistics
Matches: 242, Mismatches: 43, Indels: 55
0.71 0.13 0.16
Matches are distributed among these distances:
25 10 0.04
26 15 0.06
27 8 0.03
28 21 0.09
29 8 0.03
30 19 0.08
31 24 0.10
32 98 0.40
34 6 0.02
35 9 0.04
36 17 0.07
37 3 0.01
38 2 0.01
39 2 0.01
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (31 bp):
ATAATAAAAATAATAAAAACTTATAAAAATT
Found at i:18392180 original size:22 final size:21
Alignment explanation
Indices: 18392136--18392188 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
18392126 TATTCATAAC
*
18392136 AAAAATTA-ATATAAACTAAT
1 AAAAATTATATAAAAACTAAT
*
18392156 AAAAATTATACTAAAAAGTAAT
1 AAAAATTATA-TAAAAACTAAT
18392178 AAAAACTTATA
1 AAAAA-TTATA
18392189 AATATTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 8 0.29
21 1 0.04
22 14 0.50
23 5 0.18
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAAATTATATAAAAACTAAT
Found at i:18392182 original size:10 final size:10
Alignment explanation
Indices: 18392136--18392478 Score: 67
Period size: 10 Copynumber: 34.6 Consensus size: 10
18392126 TATTCATAAC
18392136 AAAAATTAAT
1 AAAAATTAAT
* *
18392146 ATAAACTAAT
1 AAAAATTAAT
18392156 AAAAATTATACT
1 AAAAATTA-A-T
*
18392168 AAAAAGTAAT
1 AAAAATTAAT
18392178 AAAAACTT-AT
1 AAAAA-TTAAT
*
18392188 AAATATT-AT
1 AAAAATTAAT
18392197 AATAAA-T-AT
1 AA-AAATTAAT
18392206 AATAAATCTAAT
1 AA-AAAT-TAAT
*
18392218 ---AATTTAT
1 AAAAATTAAT
*
18392225 AAAAAATATTAT
1 -AAAAAT-TAAT
18392237 ATAAAATT-AT
1 A-AAAATTAAT
*
18392247 AAATATT-AT
1 AAAAATTAAT
*
18392256 AAAAAAT-A-
1 AAAAATTAAT
**
18392264 AAAAACGAA-
1 AAAAATTAAT
18392273 AAAAATTAAAAAT
1 AAAAATT---AAT
*
18392286 AGGAAAATTATT
1 A--AAAATTAAT
* *
18392298 AAAAAATCAT
1 AAAAATTAAT
*
18392308 AAAAATTATT
1 AAAAATTAAT
18392318 AAAAA-T--T
1 AAAAATTAAT
18392325 -AAAATTAAT
1 AAAAATTAAT
*
18392334 ATAAACTT-AT
1 A-AAAATTAAT
*
18392344 AAATATTATAAT
1 AAA-AAT-TAAT
*
18392356 AAAAAATAAT
1 AAAAATTAAT
18392366 AAAAACTT-AT
1 AAAAA-TTAAT
*
18392376 AAATATTATAAT
1 AAA-AAT-TAAT
*
18392388 AAAAAATAAT
1 AAAAATTAAT
18392398 AAAAACTT-AT
1 AAAAA-TTAAT
*
18392408 AAATATT-AT
1 AAAAATTAAT
18392417 AATAAA-T-AT
1 AA-AAATTAAT
18392426 AATAAATCTAAT
1 AA-AAAT-TAAT
18392438 --AAATT-AT
1 AAAAATTAAT
18392445 AAAAA-TAAT
1 AAAAATTAAT
**
18392454 ATAAACGT-AT
1 A-AAAATTAAT
18392464 AAAAATT-AT
1 AAAAATTAAT
18392473 AAAAAT
1 AAAAAT
18392479 CATAAAAAAA
Statistics
Matches: 254, Mismatches: 37, Indels: 85
0.68 0.10 0.23
Matches are distributed among these distances:
6 4 0.02
7 7 0.03
8 10 0.04
9 75 0.30
10 92 0.36
11 23 0.09
12 36 0.14
13 1 0.00
15 6 0.02
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (10 bp):
AAAAATTAAT
Found at i:18392355 original size:22 final size:22
Alignment explanation
Indices: 18392330--18392422 Score: 75
Period size: 22 Copynumber: 4.3 Consensus size: 22
18392320 AAATTAAAAT
* *
18392330 TAATATAAACTTATAAATATTA
1 TAATAAAAACTTATAAAAATTA
* * *
18392352 TAATAAAAAATAATAAAAACT-
1 TAATAAAAACTTATAAAAATTA
* **
18392373 T-ATAAATA-TTATAATAAAAAA
1 TAATAAAAACTTATAA-AAATTA
*
18392394 TAATAAAAACTTATAAATATTA
1 TAATAAAAACTTATAAAAATTA
18392416 TAATAAA
1 TAATAAA
18392423 TATAATAAAT
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 5 0.09
20 9 0.17
21 2 0.04
22 32 0.59
23 6 0.11
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (22 bp):
TAATAAAAACTTATAAAAATTA
Found at i:18392458 original size:90 final size:88
Alignment explanation
Indices: 18392289--18392490 Score: 193
Period size: 90 Copynumber: 2.3 Consensus size: 88
18392279 TAAAAATAGG
* * ** *
18392289 AAAATTAT--TAAAAAATCATAAAAATTATTAAAAATTAAAATTAATATAAACTTATAAATATTA
1 AAAATTATAATAAAAAATAATAAAAATTATTAAAAATTAAAATAAATATAAAAATATAAAAATTA
*
18392352 TAATAAAAAATAATAAAAACTTATA
66 TAATAAAAAATAAT--AAACGTATA
* * * *
18392377 AATATTATAATAAAAAATAATAAAAACTTA-TAAATATTATAATAAATATAATAAATCTAATAAA
1 AAAATTATAATAAAAAATAATAAAAA-TTATTAAAAATTAAAATAAATATAA-AAATATAA-AAA
*
18392441 TTATAA-AAATAAT-ATAAACGTATA
63 TTATAATAAAAAATAATAAACGTATA
**
18392465 AAAATTATAA-AAATCATAA-AAAAATT
1 AAAATTATAATAAAAAATAATAAAAATT
18392491 GAACTAGACC
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
85 2 0.02
86 5 0.05
87 7 0.07
88 24 0.25
90 35 0.37
91 14 0.15
92 8 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (88 bp):
AAAATTATAATAAAAAATAATAAAAATTATTAAAAATTAAAATAAATATAAAAATATAAAAATTA
TAATAAAAAATAATAAACGTATA
Found at i:18392475 original size:9 final size:9
Alignment explanation
Indices: 18392176--18392486 Score: 106
Period size: 9 Copynumber: 34.8 Consensus size: 9
18392166 CTAAAAAGTA
18392176 ATAAAAACTT
1 ATAAAAA-TT
*
18392186 ATAAATATT
1 ATAAAAATT
18392195 ATAATAAA-T
1 ATAA-AAATT
18392204 ATAATAAATCT
1 ATAA-AAAT-T
* *
18392215 A-ATAATTT
1 ATAAAAATT
18392223 ATAAAAAATATT
1 AT--AAAA-ATT
18392235 ATATAAAATT
1 ATA-AAAATT
*
18392245 ATAAATATT
1 ATAAAAATT
*
18392254 ATAAAAAAT
1 ATAAAAATT
**
18392263 A-AAAAACG
1 ATAAAAATT
*
18392271 A-AAAAAAT
1 ATAAAAATT
18392279 -TAAAAA-T
1 ATAAAAATT
**
18392286 AGGAAAATT
1 ATAAAAATT
*
18392295 ATTAAAAAATC
1 A-T-AAAAATT
18392306 ATAAAAATT
1 ATAAAAATT
18392315 ATTAAAAA-T
1 A-TAAAAATT
18392324 -T-AAAATT
1 ATAAAAATT
*
18392331 AATATAAACTT
1 -ATA-AAAATT
*
18392342 ATAAATATT
1 ATAAAAATT
18392351 AT---AA-T
1 ATAAAAATT
*
18392356 A-AAAAATA
1 ATAAAAATT
18392364 ATAAAAACTT
1 ATAAAAA-TT
*
18392374 ATAAATATT
1 ATAAAAATT
18392383 AT---AA-T
1 ATAAAAATT
*
18392388 A-AAAAATA
1 ATAAAAATT
18392396 ATAAAAACTT
1 ATAAAAA-TT
*
18392406 ATAAATATT
1 ATAAAAATT
18392415 ATAATAAA-T
1 ATAA-AAATT
18392424 ATAATAAATCT
1 ATAA-AAAT-T
*
18392435 A-ATAAATT
1 ATAAAAATT
*
18392443 ATAAAAATA
1 ATAAAAATT
**
18392452 ATATAAACGT
1 ATA-AAAATT
18392462 ATAAAAATT
1 ATAAAAATT
*
18392471 ATAAAAATC
1 ATAAAAATT
18392480 ATAAAAA
1 ATAAAAA
18392487 AATTGAACTA
Statistics
Matches: 225, Mismatches: 40, Indels: 73
0.67 0.12 0.22
Matches are distributed among these distances:
5 4 0.02
6 6 0.03
7 7 0.03
8 26 0.12
9 108 0.48
10 49 0.22
11 21 0.09
12 4 0.02
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:18395110 original size:19 final size:20
Alignment explanation
Indices: 18395086--18395123 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
18395076 GGTACCACCA
18395086 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
18395105 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
18395124 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:18395463 original size:93 final size:93
Alignment explanation
Indices: 18395353--18395523 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
18395343 GCCCCTAAGT
* *
18395353 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
18395418 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
18395446 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
18395511 CGAGTTCGGATGC
66 CGAGTTCGGATGC
18395524 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:18395520 original size:46 final size:46
Alignment explanation
Indices: 18395348--18395520 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
18395338 AACCCGCCCC
* * * *
18395348 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
18395394 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
18395442 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
18395487 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
18395521 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:18395976 original size:30 final size:30
Alignment explanation
Indices: 18395942--18396001 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
18395932 ATTTAATACG
18395942 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
18395972 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
18396002 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:18398342 original size:11 final size:10
Alignment explanation
Indices: 18398306--18398555 Score: 52
Period size: 10 Copynumber: 26.2 Consensus size: 10
18398296 TATTATATCT
*
18398306 AATTTTTATG
1 AATTTTTATA
*
18398316 ATTTTTTATA
1 AATTTTTATA
*
18398326 AGTTTTTATA
1 AATTTTTATA
*
18398336 AA-ATTT-TA
1 AATTTTTATA
*
18398344 AATATTTTAGA
1 AAT-TTTTATA
* *
18398355 TATATTTTATT
1 AAT-TTTTATA
*
18398366 AA-CTTTATA
1 AATTTTTATA
18398375 AATATTTTAT-
1 AAT-TTTTATA
18398385 AATATTTTAT-
1 AAT-TTTTATA
18398395 -ATTTTTAT-
1 AATTTTTATA
* *
18398403 AATATTCATA
1 AATTTTTATA
*
18398413 AGTTTTTAT-
1 AATTTTTATA
*
18398422 TATTTATTAT-
1 AATTT-TTATA
*
18398432 TA-TTTTAT-
1 AATTTTTATA
*
18398440 AACTTTTATA
1 AATTTTTATA
* **
18398450 AGTTTACATA
1 AATTTTTATA
**
18398460 AATTTCAATA
1 AATTTTTATA
*
18398470 TATTTTTA-A
1 AATTTTTATA
* *
18398479 TA-TTTAAT-
1 AATTTTTATA
**
18398487 AATACTTAT-
1 AATTTTTATA
*
18398496 GATTTTTAT-
1 AATTTTTATA
18398505 -ATTTTTATGA
1 AATTTTTAT-A
18398515 AA-TTTTATA
1 AATTTTTATA
*
18398524 ACTTTTTA-A
1 AATTTTTATA
18398533 GAATTTTTATA
1 -AATTTTTATA
* *
18398544 CATTTTTCTA
1 AATTTTTATA
18398554 AA
1 AA
18398556 ATTCTAATTG
Statistics
Matches: 177, Mismatches: 45, Indels: 36
0.69 0.17 0.14
Matches are distributed among these distances:
8 28 0.16
9 44 0.25
10 88 0.50
11 17 0.10
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (10 bp):
AATTTTTATA
Found at i:18398350 original size:9 final size:10
Alignment explanation
Indices: 18398305--18398524 Score: 86
Period size: 10 Copynumber: 23.3 Consensus size: 10
18398295 ATATTATATC
18398305 TAAT-TTTTA
1 TAATATTTTA
* *
18398314 TGATTTTTTA
1 TAATATTTTA
18398324 TAAGT-TTTTA
1 TAA-TATTTTA
*
18398334 TAAAATTTTA
1 TAATATTTTA
18398344 -AATATTTTA
1 TAATATTTTA
*
18398353 GATATATTTTA
1 TA-ATATTTTA
* *
18398364 TTA-ACTTTA
1 TAATATTTTA
18398373 TAAATATTTTA
1 T-AATATTTTA
18398384 TAATATTTTA
1 TAATATTTTA
18398394 T-AT-TTTTA
1 TAATATTTTA
*
18398402 TAATA-TTCA
1 TAATATTTTA
18398411 TAAGT-TTTTA
1 TAA-TATTTTA
18398421 T--TA-TTTA
1 TAATATTTTA
*
18398428 TTATTATTTTA
1 -TAATATTTTA
*
18398439 TAA-CTTTTA
1 TAATATTTTA
**
18398448 TAAGT-TTACA
1 TAA-TATTTTA
*
18398458 TAA-ATTTCA
1 TAATATTTTA
18398467 -ATATATTTT-
1 TA-ATATTTTA
*
18398476 TAATATTTAA
1 TAATATTTTA
*
18398486 TAATA-CTTA
1 TAATATTTTA
*
18398495 TGAT-TTTTA
1 TAATATTTTA
18398504 T-AT-TTTTA
1 TAATATTTTA
18398512 TGAA-ATTTTA
1 T-AATATTTTA
18398522 TAA
1 TAA
18398525 CTTTTTAAGA
Statistics
Matches: 162, Mismatches: 22, Indels: 54
0.68 0.09 0.23
Matches are distributed among these distances:
7 5 0.03
8 16 0.10
9 57 0.35
10 65 0.40
11 19 0.12
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (10 bp):
TAATATTTTA
Found at i:18398420 original size:37 final size:37
Alignment explanation
Indices: 18398357--18398454 Score: 96
Period size: 37 Copynumber: 2.6 Consensus size: 37
18398347 ATTTTAGATA
*
18398357 TATTTTATTAACTTT-ATAAATATTTTATAATATT-TTA-
1 TATTTTA-TAACTTTCATAAGT-TTTTATAAT-TTATTAT
*
18398394 TATTTTTATAA-TATTCATAAGTTTTTATTATTTATTAT
1 TA-TTTTATAACT-TTCATAAGTTTTTATAATTTATTAT
*
18398432 TATTTTATAACTTTTATAAGTTT
1 TATTTTATAACTTTCATAAGTTT
18398455 ACATAAATTT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
36 3 0.06
37 36 0.69
38 13 0.25
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (37 bp):
TATTTTATAACTTTCATAAGTTTTTATAATTTATTAT
Found at i:18398549 original size:20 final size:19
Alignment explanation
Indices: 18398497--18398550 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
18398487 AATACTTATG
*
18398497 ATTTTTAT-ATTTTTATGA
1 ATTTTTATAATTTTTAAGA
*
18398515 AATTTTATAACTTTTTAAGA
1 ATTTTTATAA-TTTTTAAGA
18398535 ATTTTTATACATTTTT
1 ATTTTTATA-ATTTTT
18398551 CTAAAATTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 1 0.03
20 21 0.70
21 1 0.03
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (19 bp):
ATTTTTATAATTTTTAAGA
Found at i:18398634 original size:29 final size:29
Alignment explanation
Indices: 18398585--18398660 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
18398575 ACTTTCATAA
* *
18398585 TTTTTATACTTTGT-TAGAATTTAT-TAGAT
1 TTTTTATA-TTTTTATAAAATTTATAT-GAT
*
18398614 TTTTTATATTTTTATAAAATTTATATTAT
1 TTTTTATATTTTTATAAAATTTATATGAT
*
18398643 TTTATATTATTTTTATAA
1 TTTTTA-TATTTTTATAA
18398661 TTTTTATAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 4 0.10
29 24 0.60
30 12 0.30
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (29 bp):
TTTTTATATTTTTATAAAATTTATATGAT
Found at i:18398724 original size:10 final size:9
Alignment explanation
Indices: 18398261--18398720 Score: 145
Period size: 9 Copynumber: 48.8 Consensus size: 9
18398251 GACTTTTTTT
18398261 ATTTTTATA
1 ATTTTTATA
*
18398270 ATCTTTATA
1 ATTTTTATA
*
18398279 ATTTATTAGA
1 ATTT-TTATA
*
18398289 ATTTTGAT-
1 ATTTTTATA
* *
18398297 ATTATATCTA
1 ATT-TTTATA
18398307 ATTTTTATGA
1 ATTTTTAT-A
*
18398317 TTTTTTATA
1 ATTTTTATA
18398326 AGTTTTTATAA
1 A-TTTTTAT-A
*
18398337 AATTTTA-A
1 ATTTTTATA
*
18398345 ATATTTTAGA
1 AT-TTTTATA
18398355 TATATTTTATTA
1 -AT-TTTTA-TA
*
18398367 A-CTTTATAA
1 ATTTTTAT-A
18398376 ATATTTTATA
1 AT-TTTTATA
18398386 ATATTTTAT-
1 AT-TTTTATA
18398395 ATTTTTATA
1 ATTTTTATA
* *
18398404 ATATTCATA
1 ATTTTTATA
*
18398413 AGTTTTTATT
1 A-TTTTTATA
*
18398423 ATTTATTATT
1 ATTT-TTATA
18398433 A-TTTTATA
1 ATTTTTATA
*
18398441 ACTTTTATA
1 ATTTTTATA
**
18398450 AGTTTACATA
1 A-TTTTTATA
* *
18398460 AATTTCA-A
1 ATTTTTATA
18398468 TATATTTT-TA
1 -AT-TTTTATA
*
18398478 ATATTTAATA
1 AT-TTTTATA
** *
18398488 ATACTTATG
1 ATTTTTATA
18398497 ATTTTTAT-
1 ATTTTTATA
18398505 ATTTTTATGA
1 ATTTTTAT-A
*
18398515 AATTTTATA
1 ATTTTTATA
*
18398524 ACTTTTTAAGA
1 A-TTTTT-ATA
18398535 ATTTTTATA
1 ATTTTTATA
*
18398544 CATTTTTCTAAA
1 -A-TTTT-TATA
* * *
18398556 ATTCTAATT
1 ATTTTTATA
* *
18398565 GTGTTTTATT
1 AT-TTTTATA
* *
18398575 ACTTTCATA
1 ATTTTTATA
18398584 ATTTTTATA
1 ATTTTTATA
* *
18398593 CTTTGTTAGA
1 ATTT-TTATA
*
18398603 ATTTATTAGA
1 ATTT-TTATA
*
18398613 TTTTTTAT-
1 ATTTTTATA
18398621 ATTTTTATAAA
1 ATTTTTAT--A
* *
18398632 ATTTATATT
1 ATTTTTATA
*
18398641 ATTTTATATT
1 ATTTT-TATA
18398651 ATTTTTATA
1 ATTTTTATA
18398660 ATTTTTATA
1 ATTTTTATA
18398669 AGTTTATT-TCA
1 A-TTT-TTAT-A
* *
18398680 ATATTAAT-
1 ATTTTTATA
18398688 ATTTGTTA-A
1 ATTT-TTATA
*
18398697 ATATTT-TA
1 ATTTTTATA
18398705 ATTTTTATA
1 ATTTTTATA
18398714 ATTTTTA
1 ATTTTTA
18398721 ATAAAAAATA
Statistics
Matches: 336, Mismatches: 72, Indels: 86
0.68 0.15 0.17
Matches are distributed among these distances:
8 44 0.13
9 129 0.38
10 124 0.37
11 35 0.10
12 4 0.01
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (9 bp):
ATTTTTATA
Found at i:18408179 original size:27 final size:27
Alignment explanation
Indices: 18408149--18408234 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
18408139 AGGATACCAA
18408149 GTAAGACCATGCCAAGGCATGGCATTG
1 GTAAGACCATGCCAAGGCATGGCATTG
** * * *
18408176 GTAAGTTC-T-ACAAGGCAAGGAAATCAT-
1 GTAAGACCATGCCAAGGCATGG-CAT--TG
18408203 GTAAGACCATGCCAAGGCATGGCATTG
1 GTAAGACCATGCCAAGGCATGGCATTG
18408230 GTAAG
1 GTAAG
18408235 TTCTACAAGG
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 9 0.21
26 4 0.09
27 17 0.40
28 4 0.09
29 9 0.21
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.20
Consensus pattern (27 bp):
GTAAGACCATGCCAAGGCATGGCATTG
Found at i:18408190 original size:25 final size:25
Alignment explanation
Indices: 18408161--18408246 Score: 75
Period size: 25 Copynumber: 3.3 Consensus size: 25
18408151 AAGACCATGC
18408161 CAAGGCATGGCATTGGTAAGTTCTA
1 CAAGGCATGGCATTGGTAAGTTCTA
* * ** *
18408186 CAAGGCAAGGAAATCAT-GTAAGACCATGC
1 CAAGGCATGG-CAT--TGGTAAGTTC-T-A
18408215 CAAGGCATGGCATTGGTAAGTTCTA
1 CAAGGCATGGCATTGGTAAGTTCTA
18408240 CAAGGCA
1 CAAGGCA
18408247 AGGAAATCAT
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
25 16 0.36
26 4 0.09
27 12 0.27
28 4 0.09
29 9 0.20
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.21
Consensus pattern (25 bp):
CAAGGCATGGCATTGGTAAGTTCTA
Found at i:18408220 original size:54 final size:54
Alignment explanation
Indices: 18408138--18408398 Score: 254
Period size: 54 Copynumber: 4.8 Consensus size: 54
18408128 ATTAGGGTTT
* *
18408138 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
*
18408192 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
* * * * ** * * * *
18408246 AAGGAAATCATGTAAGACTATGTCAAGACATCCCATTGATAAACTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGT-AAGTTCTACAAGGC
* ** * * * * *
18408301 AAAGATCCCATGTAAGACCGTGCCAAGGCATGGAAATGGTGAGTTC-ATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
* * ** * * *
18408354 AAGGATACCACGTAAGACCATTTCAAGACATGACAATGGTAAGTT
1 AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
18408399 TAAAAAGGAA
Statistics
Matches: 168, Mismatches: 38, Indels: 3
0.80 0.18 0.01
Matches are distributed among these distances:
53 42 0.25
54 88 0.52
55 38 0.23
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (54 bp):
AAGGAAACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
Found at i:18408260 original size:27 final size:27
Alignment explanation
Indices: 18408176--18408261 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
18408166 CATGGCATTG
18408176 GTAAGTTCTACAAGGCAAGGAAATCAT
1 GTAAGTTCTACAAGGCAAGGAAATCAT
** * * *
18408203 GTAAGACCATGCCAAGGCATGG-CAT--T
1 GTAAGTTC-T-ACAAGGCAAGGAAATCAT
18408229 GGTAAGTTCTACAAGGCAAGGAAATCAT
1 -GTAAGTTCTACAAGGCAAGGAAATCAT
18408257 GTAAG
1 GTAAG
18408262 ACTATGTCAA
Statistics
Matches: 43, Mismatches: 10, Indels: 12
0.66 0.15 0.18
Matches are distributed among these distances:
25 9 0.21
26 4 0.09
27 17 0.40
28 4 0.09
29 9 0.21
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (27 bp):
GTAAGTTCTACAAGGCAAGGAAATCAT
Found at i:18415794 original size:53 final size:52
Alignment explanation
Indices: 18415615--18415818 Score: 192
Period size: 53 Copynumber: 3.8 Consensus size: 52
18415605 AGGGTTTGAG
* * * * *
18415615 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCACA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCA-A
* * * * * * *
18415669 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAA
* * * *
18415723 AATTCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAA
1 GA-TACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAA
* *
18415776 TGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 -GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
18415819 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
53 44 0.37
54 38 0.32
55 37 0.31
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (52 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAA
Found at i:18428585 original size:51 final size:51
Alignment explanation
Indices: 18428525--18428633 Score: 200
Period size: 51 Copynumber: 2.1 Consensus size: 51
18428515 ATTGAATAGA
18428525 AAAGTTGTGTGAATATTGATTAACAGTGAAACAATTCAGGGTGCAAATATG
1 AAAGTTGTGTGAATATTGATTAACAGTGAAACAATTCAGGGTGCAAATATG
*
18428576 AAAGTTGTGTGAATATTGATTAATAGTGAAACAATTCAGGGTGCAAATATG
1 AAAGTTGTGTGAATATTGATTAACAGTGAAACAATTCAGGGTGCAAATATG
*
18428627 AATGTTG
1 AAAGTTG
18428634 AATAATCACA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (51 bp):
AAAGTTGTGTGAATATTGATTAACAGTGAAACAATTCAGGGTGCAAATATG
Found at i:18429693 original size:41 final size:41
Alignment explanation
Indices: 18429633--18429715 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
18429623 TCAGACATTG
* *
18429633 AAATAGGGTTATAGAGCATTACTAAAAAATTTCAACTTAAA
1 AAATAGGGTTACAGAGCATTACCAAAAAATTTCAACTTAAA
*
18429674 AAATAGGGTTACAGGGCATTACCAAAAAATTTCAACTTAAA
1 AAATAGGGTTACAGAGCATTACCAAAAAATTTCAACTTAAA
18429715 A
1 A
18429716 CATACAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (41 bp):
AAATAGGGTTACAGAGCATTACCAAAAAATTTCAACTTAAA
Found at i:18430851 original size:27 final size:26
Alignment explanation
Indices: 18430816--18430927 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
18430806 AGCATGGCTG
* *
18430816 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
18430842 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
18430870 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
18430897 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
18430924 CCAG
1 CCAG
18430928 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:18430909 original size:54 final size:54
Alignment explanation
Indices: 18430816--18430927 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
18430806 AGCATGGCTG
* *
18430816 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
18430870 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
18430924 CCAG
1 CCAG
18430928 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:18434959 original size:39 final size:40
Alignment explanation
Indices: 18434845--18435025 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
18434835 GCTACTCGTT
* *
18434845 CAAATGCCTTCGGGACATAGCCAGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
18434885 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
18434925 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
18434964 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
18435005 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
18435026 TGGACATCAT
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:18434989 original size:79 final size:80
Alignment explanation
Indices: 18434847--18435025 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 80
18434837 TACTCGTTCA
* *
18434847 AATGCCTTCGGGACATAGCCAGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCAGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
18434912 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
18434927 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCAGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
18434989 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
18435006 AAAGCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
18435026 TGGACATCAT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 58 0.68
80 23 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCAGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:18437158 original size:93 final size:93
Alignment explanation
Indices: 18437045--18437216 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
18437035 CGCCCATAAG
*
18437045 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
18437109 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
18437138 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18437203 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
18437217 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18437211 original size:46 final size:46
Alignment explanation
Indices: 18437038--18437213 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
18437028 TGTAACCCGC
* *
18437038 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
18437084 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
18437134 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
18437177 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
18437214 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:18440633 original size:28 final size:28
Alignment explanation
Indices: 18440601--18440728 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
18440591 ATAGTAAGTC
*
18440601 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
18440629 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
18440658 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
18440686 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
18440715 CGCACACTTAGTGC
1 CGCACACTTAGTGC
18440729 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:18440691 original size:57 final size:57
Alignment explanation
Indices: 18440600--18440728 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
18440590 TATAGTAAGT
*
18440600 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
18440657 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
18440714 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
18440729 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:18446012 original size:91 final size:93
Alignment explanation
Indices: 18445855--18446023 Score: 281
Period size: 91 Copynumber: 1.8 Consensus size: 93
18445845 GGATGGTTGA
*
18445855 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
18445920 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
18445948 GCATCCGAACTCGTT-AGTTGAGT-CGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGAG
18446010 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
18446024 ACTTAGGGCG
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
90 2 0.03
91 47 0.65
92 8 0.11
93 15 0.21
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18446026 original size:46 final size:45
Alignment explanation
Indices: 18445859--18446028 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
18445849 GGTTGAGCAT
* *
18445859 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
18445904 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
18445949 CATCCGAACTCGTT-AGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 ---CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
18445995 CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
18446029 GGGCGGGTTA
Statistics
Matches: 103, Mismatches: 9, Indels: 24
0.76 0.07 0.18
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 8 0.08
45 17 0.17
46 51 0.50
47 12 0.12
48 4 0.04
49 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:18449785 original size:277 final size:279
Alignment explanation
Indices: 18449250--18449816 Score: 822
Period size: 277 Copynumber: 2.0 Consensus size: 279
18449240 TTTTAAGTTC
*
18449250 ATGGAAAAAATTAGGACATGGAAGGAATTTTGGAAGTTTTAGTAGTAAGGGTATTTTGGTTATTT
1 ATGGAAAAAATTAGGACATGGAAGGAATTTTGGAAGTTTTAGTAGTAAGGGTATTTTGGTCATTT
18449315 TAGTTTATTTAAAATGAATTAAAAACAAAATTAAAAGCAATTTGTCATCTTCTTCATTTAGGACA
66 TAGTTTATTTAAAATGAATTAAAAACAAAATTAAAAGCAATTTGTCATCTTCTTCATTTAGGACA
*
18449380 AATTTCAAGGTTCTCCATAGCTAGGTTTGTTTCGAAGCTTCCAAGCTCCATAGTAAGTGATTTCA
131 AATTTCAAGGTTCTCCATAGCTAGGTTTGTTTCGAAGCTTCCAAGCTCCATAGTAAGTGATTCCA
* * *
18449445 AGCCCCGTTTTAATGTTTTTTACGTTTTTGAATCCTGTAGCTCGATAAGCATTATGTTAGCAATA
196 AGCCCCGTTTTAATGTTCTTTACATTTTTGAATCCGGTAGCTCGATAAGCATTATGTTAGCAATA
*
18449510 AGTTCAACCTA-GGTTCTAT
261 A-TTCAACCTAGGGTTATAT
18449529 AATGGAAAAAATTA-GACATGGAAGGAATTTTTGGAAAG-TTTAGTA-TAA-GGTATTTTGGTCA
1 -ATGGAAAAAATTAGGACATGGAAGGAA-TTTTGG-AAGTTTTAGTAGTAAGGGTATTTTGGTCA
18449590 -TTTAG-TTA-TTAAAA-GAATTAAAAACAAAATTAAAAGCCAATTTTGTCCATCTTCTTCA-TT
63 TTTTAGTTTATTTAAAATGAATTAAAAACAAAATTAAAAG-CAA-TTTGT-CATCTTCTTCATTT
*
18449650 AGGCCGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTC-AAGCTTCCAAGCTCCATAG-AA
125 AGGAC-AAATTTCAA-GGTTCTCCATAGCTA-GGTTTGTTTCGAAGCTTCCAAGCTCCATAGTAA
*
18449713 GTGATTCCAAGCCCCGTTTTTATGTTCTTTACATTTTTGGAATCCCGGTAGCTC-ATTAAGC-TT
187 GTGATTCCAAGCCCCGTTTTAATGTTCTTTACATTTTT-GAAT-CCGGTAGCTCGA-TAAGCATT
*
18449776 ATG-TAGCAATAATTCAACTTAGGGTTATAT
249 ATGTTAGCAATAATTCAACCTAGGGTTATAT
*
18449806 TTGGAAAAAAT
1 ATGGAAAAAAT
18449817 ACCCATAGGT
Statistics
Matches: 265, Mismatches: 10, Indels: 28
0.87 0.03 0.09
Matches are distributed among these distances:
274 22 0.08
275 9 0.03
276 32 0.12
277 77 0.29
278 56 0.21
279 40 0.15
280 26 0.10
281 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (279 bp):
ATGGAAAAAATTAGGACATGGAAGGAATTTTGGAAGTTTTAGTAGTAAGGGTATTTTGGTCATTT
TAGTTTATTTAAAATGAATTAAAAACAAAATTAAAAGCAATTTGTCATCTTCTTCATTTAGGACA
AATTTCAAGGTTCTCCATAGCTAGGTTTGTTTCGAAGCTTCCAAGCTCCATAGTAAGTGATTCCA
AGCCCCGTTTTAATGTTCTTTACATTTTTGAATCCGGTAGCTCGATAAGCATTATGTTAGCAATA
ATTCAACCTAGGGTTATAT
Found at i:18450577 original size:46 final size:46
Alignment explanation
Indices: 18450527--18450702 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
18450517 TGGTTGAGCA
18450527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
18450573 TCCGAACTCATTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18450618 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18450666 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18450703 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18450683 original size:93 final size:93
Alignment explanation
Indices: 18450524--18450695 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
18450514 GGATGGTTGA
* *
18450524 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
18450589 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
18450617 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
18450682 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
18450696 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18455356 original size:93 final size:93
Alignment explanation
Indices: 18455248--18455418 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
18455238 GCCCCTAAGT
* *** *
18455248 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
18455313 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * * *
18455341 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAGGTGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
18455406 CGAGTTCGAATGC
66 CGAGTTCGAATGC
18455419 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:18469899 original size:46 final size:46
Alignment explanation
Indices: 18469849--18470021 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
18469839 TGGTTGAGCA
18469849 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18469895 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18469940 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
18469988 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
18470022 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18470005 original size:93 final size:93
Alignment explanation
Indices: 18469846--18470016 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
18469836 GGATGGTTGA
* *
18469846 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18469911 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
18469939 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18470004 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
18470017 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18474725 original size:93 final size:93
Alignment explanation
Indices: 18474612--18474783 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
18474602 CGCCCATAAG
* * *
18474612 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18474677 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
18474705 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18474770 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
18474784 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18474780 original size:46 final size:46
Alignment explanation
Indices: 18474605--18474780 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
18474595 TGTAACCCGC
* * *
18474605 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
18474651 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
18474701 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
18474744 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
18474781 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:18481332 original size:11 final size:10
Alignment explanation
Indices: 18481312--18481346 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
18481302 AGTACAGACA
18481312 AATAATTCAG
1 AATAATTCAG
18481322 AATATATTCAG
1 AATA-ATTCAG
*
18481333 AAAAATTCAG
1 AATAATTCAG
18481343 AATA
1 AATA
18481347 CTTATAGGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.29
Consensus pattern (10 bp):
AATAATTCAG
Found at i:18482456 original size:28 final size:27
Alignment explanation
Indices: 18482406--18482510 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
18482396 GGCTACCAAA
* *
18482406 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
18482433 ACAGATAATCGTGGCAGAGCCACCAGAAT
1 ACAGATAAT-GTGGCAGAGCCACCAG-AT
***
18482462 A-A-AT-ATGTTTTAGAGCCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
18482486 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
18482511 GACGCTTCCT
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
24 3 0.05
25 15 0.24
26 3 0.05
27 24 0.38
28 15 0.24
29 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:18485424 original size:20 final size:20
Alignment explanation
Indices: 18485399--18485436 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
18485389 CCAAATTGTC
18485399 TTAC-TTTCATTTGCATTTCA
1 TTACTTTTCA-TTGCATTTCA
18485419 TTACTTTTCATTGCATTT
1 TTACTTTTCATTGCATTT
18485437 ACTATCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.58
Consensus pattern (20 bp):
TTACTTTTCATTGCATTTCA
Found at i:18485445 original size:20 final size:21
Alignment explanation
Indices: 18485403--18485445 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
18485393 ATTGTCTTAC
*
18485403 TTTCATTTGCATTTCATTACT
1 TTTCATTTGCATTTCACTACT
18485424 TTTCA-TTGCATTT-ACTATCT
1 TTTCATTTGCATTTCACTA-CT
18485444 TT
1 TT
18485446 AGCTCAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 12 0.60
21 5 0.25
ACGTcount: A:0.19, C:0.19, G:0.05, T:0.58
Consensus pattern (21 bp):
TTTCATTTGCATTTCACTACT
Found at i:18487651 original size:21 final size:21
Alignment explanation
Indices: 18487609--18487676 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
18487599 GCCATCGCTA
* *
18487609 CTGCCTCTGCCTCTCC-CACTG
1 CTGCCACTGCCTC-CCTCTCTG
*
18487630 CTGCCGCTGCCTCCCT-TGCTG
1 CTGCCACTGCCTCCCTCT-CTG
*
18487651 CTGCTACTGCCTCCCTCTCTG
1 CTGCCACTGCCTCCCTCTCTG
18487672 CTGCC
1 CTGCC
18487677 TCCGCTCTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 2 0.05
21 36 0.92
22 1 0.03
ACGTcount: A:0.03, C:0.50, G:0.18, T:0.29
Consensus pattern (21 bp):
CTGCCACTGCCTCCCTCTCTG
Found at i:18493224 original size:9 final size:9
Alignment explanation
Indices: 18493209--18493315 Score: 94
Period size: 9 Copynumber: 11.7 Consensus size: 9
18493199 ATATTGATGT
18493209 ATTATGTAA
1 ATTATGTAA
*
18493218 GTTATGTAA
1 ATTATGTAA
18493227 ATTATGTAA
1 ATTATGTAA
* **
18493236 GTTATCCAA
1 ATTATGTAA
18493245 ATTATGTAA
1 ATTATGTAA
18493254 ATTATGTAA
1 ATTATGTAA
18493263 GA-TATGATATA
1 -ATTATG-TA-A
18493274 TATTTATGT--
1 -A-TTATGTAA
18493283 ATTATGTAA
1 ATTATGTAA
*
18493292 GTTATGTAA
1 ATTATGTAA
18493301 ATTATGTAA
1 ATTATGTAA
*
18493310 AATATG
1 ATTATG
18493316 ATATATATTT
Statistics
Matches: 79, Mismatches: 12, Indels: 14
0.75 0.11 0.13
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 62 0.78
10 3 0.04
11 2 0.03
12 1 0.01
13 4 0.05
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (9 bp):
ATTATGTAA
Found at i:18493232 original size:18 final size:18
Alignment explanation
Indices: 18493209--18493309 Score: 107
Period size: 18 Copynumber: 5.5 Consensus size: 18
18493199 ATATTGATGT
18493209 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
18493227 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
*
18493245 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
18493263 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
18493283 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
18493301 ATTATGTAA
1 ATTATGTAA
18493310 AATATGATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
16 7 0.10
17 4 0.06
18 41 0.60
19 4 0.06
20 1 0.01
21 4 0.06
22 7 0.10
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:18493518 original size:5 final size:5
Alignment explanation
Indices: 18493508--18493552 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
18493498 TTTTTGTGAT
18493508 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
18493553 CTTTAAATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18493634 original size:43 final size:43
Alignment explanation
Indices: 18493587--18493914 Score: 138
Period size: 43 Copynumber: 7.3 Consensus size: 43
18493577 AGGTAATTTA
*
18493587 AAAATAAAATAAAAGTAGACAAAAGTTTTTTCCTGATTAAAAT
1 AAAATAAAATAAAAGTAGACAAAAGTTTTTTCATGATTAAAAT
* ** * * * * **
18493630 AAAATAAAATAAAACTTTA-AATACAATTTACTTTAATTAGGTAATTT
1 AAAATAAAATAAAAGTAGACAA-A-AGTTT--TTTCATGA-TTAAAAT
*
18493677 AAAAATAAAATAAAAGTAGACAAAGGTTTTTTCATGATTAAAAT
1 -AAAATAAAATAAAAGTAGACAAAAGTTTTTTCATGATTAAAAT
* * * * * **
18493721 AAAATAAAATAAAA-TAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
1 AAAATAAAATAAAAGT-AGAC----AA-A-AGTTT--TTTCATGA-TTAAAAT
*
18493773 AAAAATAAAATAAAAGTAGAC--AAGTTTTTTCTTGATTAAAAT
1 -AAAATAAAATAAAAGTAGACAAAAGTTTTTTCATGATTAAAAT
* * * * **
18493815 AAAATAAAACTTTAAA-T--AC--AA-TTTAATTTAATTAGGTAATTT
1 AAAATAAAA--TAAAAGTAGACAAAAGTTT--TTTCATGA-TTAAAAT
18493857 AAAAATAAAATAAAAGTAGAC-AAAGATTTTTTCATGATTAAAAT
1 -AAAATAAAATAAAAGTAGACAAAAG-TTTTTTCATGATTAAAAT
18493901 AAAATAAAATAAAA
1 AAAATAAAATAAAA
18493915 TAAAACTTTA
Statistics
Matches: 205, Mismatches: 49, Indels: 62
0.65 0.16 0.20
Matches are distributed among these distances:
39 3 0.01
40 4 0.02
41 18 0.09
42 13 0.06
43 66 0.32
44 14 0.07
45 18 0.09
46 6 0.03
47 12 0.06
48 18 0.09
49 5 0.02
51 6 0.03
52 4 0.02
53 17 0.08
54 1 0.00
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (43 bp):
AAAATAAAATAAAAGTAGACAAAAGTTTTTTCATGATTAAAAT
Found at i:18493724 original size:96 final size:94
Alignment explanation
Indices: 18493528--18494157 Score: 966
Period size: 91 Copynumber: 6.9 Consensus size: 94
18493518 TAAAATAAAA
*
18493528 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATTTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
18493593 AAATAAAAGTAGACAAAAGTTTTTTCCTGA-
66 AAATAAAAGTAGAC-AAAGTTTTTTCCT-AT
*
18493623 T----TAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
*
18493684 AAATAAAAGTAGACAAAGGTTTTTTCATGAT
66 AAATAAAAGTAGACAAA-GTTTTTTCCT-AT
18493715 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
18493780 AAATAAAAGTAGAC-AAGTTTTTT-C--T
66 AAATAAAAGTAGACAAAGTTTTTTCCTAT
*
18493805 T--GAT----TAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
*
18493864 AAATAAAAGTAGACAAAGATTTTTTCATGAT
66 AAATAAAAGTAGACAAAG-TTTTTTCCT-AT
18493895 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT---AA-A
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
18493956 AAATAAAAGTAGAC-AAGTTTTTTCCTATT
66 AAATAAAAGTAGACAAAGTTTTTTCCTA-T
*
18493985 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT--TAA-A
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
18494047 AAATAAAAGTAGAC-AAGTTTTTTCCTATT
66 AAATAAAAGTAGACAAAGTTTTTTCCTA-T
18494076 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
1 TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
18494141 AAATAAAAGTAGACAAA
66 AAATAAAAGTAGACAAA
18494158 ATATTTTAAA
Statistics
Matches: 501, Mismatches: 10, Indels: 48
0.90 0.02 0.09
Matches are distributed among these distances:
84 69 0.14
85 3 0.01
86 6 0.01
88 2 0.00
89 1 0.00
90 74 0.15
91 176 0.35
92 18 0.04
93 4 0.01
94 22 0.04
95 5 0.01
96 121 0.24
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (94 bp):
TAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATA
AAATAAAAGTAGACAAAGTTTTTTCCTAT
Found at i:18493725 original size:5 final size:5
Alignment explanation
Indices: 18493715--18493739 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18493705 TTTTCATGAT
18493715 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
18493740 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18493905 original size:5 final size:5
Alignment explanation
Indices: 18493895--18493919 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18493885 TTTTCATGAT
18493895 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
18493920 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18493995 original size:5 final size:5
Alignment explanation
Indices: 18493985--18494009 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18493975 TTTTCCTATT
18493985 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
18494010 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18494086 original size:5 final size:5
Alignment explanation
Indices: 18494076--18494100 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18494066 TTTTCCTATT
18494076 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
18494101 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18494296 original size:99 final size:99
Alignment explanation
Indices: 18494121--18494404 Score: 443
Period size: 99 Copynumber: 2.9 Consensus size: 99
18494111 AATTTAATTT
* **
18494121 AATTAGGTAATTTAAAAATAAAATAAAAGTA--GACAA--AAT-ATTTTAAACATTGTTAAGTCT
1 AATTAGGTAATTTAAAAATAAAATAAAA-TATTTA-AATTAATGACATTAAAC-TTGTTAAGTCT
18494181 TTCTTTTAATTTGCATTTATTAATTTGTTAATATAAA
63 TTCTTTTAATTTGCATTTATTAATTTGTTAATATAAA
18494218 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
1 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
*
18494283 TTTTAATTTGCATTTATTAATTTGTTAATTTAAA
66 TTTTAATTTGCATTTATTAATTTGTTAATATAAA
* *
18494317 AATTAGGTAATTTAAGAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTGTTTC
1 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
*
18494382 TTTTAATTTGCATATATTAATTT
66 TTTTAATTTGCATTTATTAATTT
18494405 AAGTAAACAT
Statistics
Matches: 175, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
96 2 0.01
97 30 0.17
98 1 0.01
99 135 0.77
100 7 0.04
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.44
Consensus pattern (99 bp):
AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
TTTTAATTTGCATTTATTAATTTGTTAATATAAA
Found at i:18495080 original size:8 final size:8
Alignment explanation
Indices: 18495067--18495154 Score: 92
Period size: 8 Copynumber: 11.0 Consensus size: 8
18495057 CAAAAAATTC
18495067 CACTATTA
1 CACTATTA
18495075 CACTATTA
1 CACTATTA
18495083 CACTATTA
1 CACTATTA
*
18495091 CACTATATG
1 CACTAT-TA
18495100 CA--ATTA
1 CACTATTA
*
18495106 CACTATTC
1 CACTATTA
18495114 CACTATT-
1 CACTATTA
*
18495121 CTACTATTC
1 C-ACTATTA
*
18495130 CACTATTC
1 CACTATTA
18495138 CACTATTA
1 CACTATTA
18495146 TCACTATTA
1 -CACTATTA
18495155 TCATAATCAC
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
6 3 0.04
7 3 0.04
8 52 0.74
9 12 0.17
ACGTcount: A:0.33, C:0.27, G:0.01, T:0.39
Consensus pattern (8 bp):
CACTATTA
Found at i:18495109 original size:31 final size:32
Alignment explanation
Indices: 18495063--18495154 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 32
18495053 CAATCAAAAA
18495063 ATTCCACTATTACACTATTACACTATTAC-ACT
1 ATTCCAC-ATTACACTATTACACTATTACTACT
* *
18495095 ATATGCA-ATTACACTATTCCACTATT-CTACT
1 AT-TCCACATTACACTATTACACTATTACTACT
*
18495126 ATTCCACTATTCCACTATTATCACTATTA
1 ATTCCAC-ATTACACTATTA-CACTATTA
18495155 TCATAATCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
30 4 0.08
31 23 0.47
32 12 0.24
33 10 0.20
ACGTcount: A:0.33, C:0.27, G:0.01, T:0.39
Consensus pattern (32 bp):
ATTCCACATTACACTATTACACTATTACTACT
Found at i:18496389 original size:14 final size:14
Alignment explanation
Indices: 18496351--18496391 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
18496341 ATTAAACTCT
*
18496351 AACCCCTAAACCATA
1 AACCCCT-AACCCTA
*
18496366 AACCCTTAACCCTA
1 AACCCCTAACCCTA
18496380 AACCCCTAACCC
1 AACCCCTAACCC
18496392 GACCCTAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.39, C:0.46, G:0.00, T:0.15
Consensus pattern (14 bp):
AACCCCTAACCCTA
Found at i:18497040 original size:41 final size:40
Alignment explanation
Indices: 18496991--18497086 Score: 122
Period size: 41 Copynumber: 2.4 Consensus size: 40
18496981 TTTCTCCAAT
*
18496991 GCGCCGCTAATGGTCAAGC-TATAGCGGCGTTTCTCATATAA
1 GCGCCGCTAATGCTCAA-CATATAGCGGCGTTTC-CATATAA
* *
18497032 GCGCCGCTAATTCTCAACATATAGCGGCGTTTCCTTATAA
1 GCGCCGCTAATGCTCAACATATAGCGGCGTTTCCATATAA
**
18497072 GTTCCGCTAATGCTC
1 GCGCCGCTAATGCTC
18497087 GTTTTTTAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 19 0.40
41 29 0.60
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (40 bp):
GCGCCGCTAATGCTCAACATATAGCGGCGTTTCCATATAA
Found at i:18497158 original size:41 final size:40
Alignment explanation
Indices: 18497075--18497162 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 40
18497065 CTTATAAGTT
* * * *
18497075 CCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTGGAAGCG
1 CCGCTAATGCTCGTTTCTTAGTGGCGTTTTTATGAAAACG
*
18497115 CCGCTAATGCTC-TTTCTTAGTGGCGTTTTTTTATTAAAACG
1 CCGCTAATGCTCGTTTCTTAGTGGCG--TTTTTATGAAAACG
18497156 CCGCTAA
1 CCGCTAA
18497163 AAGCGCCGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 12 0.29
40 12 0.29
41 17 0.41
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (40 bp):
CCGCTAATGCTCGTTTCTTAGTGGCGTTTTTATGAAAACG
Found at i:18497845 original size:25 final size:25
Alignment explanation
Indices: 18497804--18497995 Score: 226
Period size: 25 Copynumber: 7.8 Consensus size: 25
18497794 TTCTGTACAT
* *
18497804 GTATGCTCACACAAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
*
18497829 GTATGCTCAGACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
* *
18497854 G--TGCTCACACGAGATGTAAATCT
1 GTATGCTCACACGAGCTGTAAATCG
* * * * *
18497877 GTATACCCACACAAGCTGTAATTTG
1 GTATGCTCACACGAGCTGTAAATCG
* *
18497902 GTATGCTCTCACGAGCTGTAAATTG
1 GTATGCTCACACGAGCTGTAAATCG
* *
18497927 GTATGCTCACACGAGCTATAAATTG
1 GTATGCTCACACGAGCTGTAAATCG
*
18497952 ATATGCTCACACGAGCTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
*
18497977 GCATGCTCACACGAGCTGT
1 GTATGCTCACACGAGCTGT
18497996 GGAGTATCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
23 20 0.14
25 120 0.86
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCG
Found at i:18501052 original size:19 final size:18
Alignment explanation
Indices: 18501030--18501076 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
18501020 GCTAGGGCTG
*
18501030 AAAGGAAAAATATGAGGAA
1 AAAGGAAAAAAATGA-GAA
*
18501049 AAAGAGAAAAAAATGAGAG
1 AAAG-GAAAAAAATGAGAA
18501068 AAAGGAAAA
1 AAAGGAAAA
18501077 GTACACCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.20
19 10 0.40
20 10 0.40
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (18 bp):
AAAGGAAAAAAATGAGAA
Found at i:18501057 original size:20 final size:20
Alignment explanation
Indices: 18501030--18501070 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
18501020 GCTAGGGCTG
*
18501030 AAAGGAAAAATATGAG-GAA
1 AAAGGAAAAAAATGAGAGAA
18501049 AAAGAGAAAAAAATGAGAGAA
1 AAAG-GAAAAAAATGAGAGAA
18501070 A
1 A
18501071 GGAAAAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 11 0.58
21 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.07
Consensus pattern (20 bp):
AAAGGAAAAAAATGAGAGAA
Found at i:18535857 original size:24 final size:25
Alignment explanation
Indices: 18535804--18535858 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
18535794 CACTACCGAT
18535804 CAGGATGCTCGTAGGAACTATTTAA
1 CAGGATGCTCGTAGGAACTATTTAA
* *
18535829 TAGGATGCTCG-A-GAAGCTTTTTAA
1 CAGGATGCTCGTAGGAA-CTATTTAA
18535853 CAGGAT
1 CAGGAT
18535859 TTCTCGTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 3 0.12
24 13 0.50
25 10 0.38
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (25 bp):
CAGGATGCTCGTAGGAACTATTTAA
Found at i:18543416 original size:15 final size:15
Alignment explanation
Indices: 18543398--18543427 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
18543388 TTGGCTTTAC
*
18543398 AATTTAGTCCTTTTT
1 AATTTAGTCATTTTT
18543413 AATTTAGTCATTTTT
1 AATTTAGTCATTTTT
18543428 CTATACTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60
Consensus pattern (15 bp):
AATTTAGTCATTTTT
Found at i:18545094 original size:13 final size:13
Alignment explanation
Indices: 18545076--18545100 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18545066 ATTTACAAGA
18545076 TTACATAATCAAT
1 TTACATAATCAAT
18545089 TTACATAATCAA
1 TTACATAATCAA
18545101 ATCCAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:18551189 original size:27 final size:29
Alignment explanation
Indices: 18551141--18551194 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
18551131 TGAATTGTGA
* *
18551141 AAATTAATCAATTTT-TATTTTGTTTTAG
1 AAATTAATCAATTTTCAATTTGGTTTTAG
18551169 AAATTAA-CAATTTTCAATTTGGTTTT
1 AAATTAATCAATTTTCAATTTGGTTTT
18551195 TGGTTTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.33, C:0.06, G:0.07, T:0.54
Consensus pattern (29 bp):
AAATTAATCAATTTTCAATTTGGTTTTAG
Found at i:18552876 original size:23 final size:21
Alignment explanation
Indices: 18552830--18552876 Score: 51
Period size: 23 Copynumber: 2.1 Consensus size: 21
18552820 GTCTTTTTTT
*
18552830 TCTTTTTCTTTTTTTGTATCA
1 TCTTTTTCTTTTTTTGTATAA
18552851 TCTTCTTTCATTTTTTTCGTA-AA
1 TCTT-TTTC-TTTTTTT-GTATAA
18552874 TCT
1 TCT
18552877 CTTGGTGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 4 0.18
23 11 0.50
24 3 0.14
ACGTcount: A:0.13, C:0.17, G:0.04, T:0.66
Consensus pattern (21 bp):
TCTTTTTCTTTTTTTGTATAA
Done.