Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 66 of 253
Found at i:18988409 original size:25 final size:27
Alignment explanation
Indices: 18988350--18988410 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
18988340 ATATTTTCTC
*
18988350 TTAA-ATTTTAAATTTTATTTAATCAT
1 TTAATATTTTAAATTTTATTGAATCAT
* *
18988376 TTAAT-TTTTCAA-TTTATTGAATTA-
1 TTAATATTTTAAATTTTATTGAATCAT
18988400 TTAATATTTTA
1 TTAATATTTTA
18988411 TATTAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
24 5 0.17
25 14 0.48
26 10 0.34
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (27 bp):
TTAATATTTTAAATTTTATTGAATCAT
Found at i:18996311 original size:25 final size:25
Alignment explanation
Indices: 18996281--18996329 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
18996271 ATTTTGATTC
18996281 ACCTCTAGTTTTAAACAATTTCTAA
1 ACCTCTAGTTTTAAACAATTTCTAA
**
18996306 ACCTCTAGTTTTAAATGATTTCTA
1 ACCTCTAGTTTTAAACAATTTCTA
18996330 CTTTTCTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (25 bp):
ACCTCTAGTTTTAAACAATTTCTAA
Found at i:18996646 original size:29 final size:29
Alignment explanation
Indices: 18996603--18996690 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 29
18996593 GAAAGCATGT
* *
18996603 ATATGAATATGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
18996632 GTATGAATGTGATTTGGGCCTAATGAGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
18996661 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
18996689 AT
1 AT
18996691 TTGCATGTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 16 0.31
29 35 0.69
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:19003670 original size:8 final size:8
Alignment explanation
Indices: 19003657--19003687 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
19003647 ATCGGCAAAA
19003657 GCCGAAAT
1 GCCGAAAT
19003665 GCCGAAAT
1 GCCGAAAT
*
19003673 GCCGAAAA
1 GCCGAAAT
19003681 GCCGAAA
1 GCCGAAA
19003688 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.42, C:0.26, G:0.26, T:0.06
Consensus pattern (8 bp):
GCCGAAAT
Found at i:19003940 original size:29 final size:29
Alignment explanation
Indices: 19003898--19004022 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
19003888 GAAAGCATGT
*
19003898 ATATGAATGTGATTTGGGCCAAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
19003927 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
19003956 ATACGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
19003985 ATAAGAATG-AAATTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
19004013 ATATGCATGT
1 ATATGAATGT
19004023 TTGTAGACTT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 23 0.27
29 62 0.73
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:19010079 original size:22 final size:22
Alignment explanation
Indices: 19010043--19010086 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
19010033 GAAAATAATC
*
19010043 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
**
19010065 AAAATTAATTGAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
19010087 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:19013597 original size:28 final size:28
Alignment explanation
Indices: 19013565--19013634 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
19013555 ATAGTAAGTC
19013565 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
19013593 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
19013621 CGCACACTTAGTGC
1 CGCACACTTAGTGC
19013635 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:19018167 original size:212 final size:211
Alignment explanation
Indices: 19017715--19018346 Score: 1176
Period size: 212 Copynumber: 3.0 Consensus size: 211
19017705 TTGAAGATAC
*
19017715 AATATTTAGTCAAATTTATCCAATTCATTCATTAATAATTAGCATTATTCAAGAATTAAGCATCG
1 AATATTTAGTCAAATTTATCCAATTCATTCATCAATAATTAGCATTATTCAAGAATTAAGCATCG
19017780 AATGTAACAAAAATTTTCAAACACATTTGCATTAACCATAAATAAACCTTTCATGCTTTATTAAA
66 AATGTAACAAAAATTTTCAAACACATTTGCATTAACCATAAATAAACCTTTCATGCTTTATTAAA
19017845 CTTTTTTTT-AAATATGGGTGTATTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGTA
131 CTTTTTTTTAAAATATGGGTGTATTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGTA
*
19017909 CTGTCCCCAATCCATT
196 CTGTCCCCAATCCACT
*
19017925 AATATTTAGTCAAATTTATCCAAGTCATTCATCAATAATTAGCATTATTCAAGAATTAAGCATCG
1 AATATTTAGTCAAATTTATCCAATTCATTCATCAATAATTAGCATTATTCAAGAATTAAGCATCG
*
19017990 AATGTAACAAAAATTTTCAAACACATTTACATTAACCATAAATAAACCTTTCATGCTTTATTAAA
66 AATGTAACAAAAATTTTCAAACACATTTGCATTAACCATAAATAAACCTTTCATGCTTTATTAAA
19018055 CTTATTTTTTAAAATATGGGTGTATTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGT
131 CTT-TTTTTTAAAATATGGGTGTATTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGT
*
19018120 GCTGTCCCCAATCCACT
195 ACTGTCCCCAATCCACT
*
19018137 AATATTTAGTCAAATTTATCCAATTCATTCATCAATAATTAGCATTATTCGAGAATTAAGCATCG
1 AATATTTAGTCAAATTTATCCAATTCATTCATCAATAATTAGCATTATTCAAGAATTAAGCATCG
19018202 AATGTAACAAAAATTTTCAAACACATTTGCATTAACCATAAATAAACCTTTCATGCTTTATTAAA
66 AATGTAACAAAAATTTTCAAACACATTTGCATTAACCATAAATAAACCTTTCATGCTTTATTAAA
*
19018267 CTTTTTTTTAAAAATATGGGTGTACTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGT
131 CTTTTTTTT-AAAATATGGGTGTATTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGT
19018332 ACTGTCCCCAATCCA
195 ACTGTCCCCAATCCA
19018347 GTAACATTAA
Statistics
Matches: 409, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
210 130 0.32
211 12 0.03
212 267 0.65
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (211 bp):
AATATTTAGTCAAATTTATCCAATTCATTCATCAATAATTAGCATTATTCAAGAATTAAGCATCG
AATGTAACAAAAATTTTCAAACACATTTGCATTAACCATAAATAAACCTTTCATGCTTTATTAAA
CTTTTTTTTAAAATATGGGTGTATTTCCAAACCCCATATGCATTCCCCCAAACTTAAAGTTTGTA
CTGTCCCCAATCCACT
Found at i:19018823 original size:15 final size:15
Alignment explanation
Indices: 19018800--19018836 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
19018790 ATTAATAATG
19018800 TTCTCAGCAGATTCT
1 TTCTCAGCAGATTCT
* *
19018815 TTCTTAGCAGCTTCT
1 TTCTCAGCAGATTCT
19018830 TTCTCAG
1 TTCTCAG
19018837 TATTTTCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.16, C:0.27, G:0.14, T:0.43
Consensus pattern (15 bp):
TTCTCAGCAGATTCT
Found at i:19019976 original size:23 final size:23
Alignment explanation
Indices: 19019944--19019990 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
19019934 GTCATAAAGG
* *
19019944 TTAGCATAAAACTTACGTACCAA
1 TTAGCATAAAACTCACATACCAA
*
19019967 TTAGCTTAAAACTCACATACCAA
1 TTAGCATAAAACTCACATACCAA
19019990 T
1 T
19019991 AAAGGAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (23 bp):
TTAGCATAAAACTCACATACCAA
Found at i:19025553 original size:21 final size:21
Alignment explanation
Indices: 19025511--19025554 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
19025501 CTAATTCTGG
* *
19025511 TGTGGATGCATCTGGCTTTGT
1 TGTGGAAGCATCTGGCTATGT
19025532 TGTGGAAGCATCTGAG-TATGT
1 TGTGGAAGCATCTG-GCTATGT
19025553 TG
1 TG
19025555 ATTGTAGTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.16, C:0.11, G:0.34, T:0.39
Consensus pattern (21 bp):
TGTGGAAGCATCTGGCTATGT
Found at i:19025566 original size:21 final size:21
Alignment explanation
Indices: 19025542--19025581 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
19025532 TGTGGAAGCA
19025542 TCTG-AGTATGTTGATTGTAGT
1 TCTGCAGT-TGTTGATTGTAGT
*
19025563 TCTGCTGTTGTTGATTGTA
1 TCTGCAGTTGTTGATTGTA
19025582 ATTCCCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.15, C:0.07, G:0.28, T:0.50
Consensus pattern (21 bp):
TCTGCAGTTGTTGATTGTAGT
Found at i:19049317 original size:17 final size:18
Alignment explanation
Indices: 19049284--19049317 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
19049274 ATGATGTGCC
19049284 AAACTATTTTCATGCTTG
1 AAACTATTTTCATGCTTG
19049302 AAACTATTTT-ATGCTT
1 AAACTATTTTCATGCTT
19049318 ACTATTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (18 bp):
AAACTATTTTCATGCTTG
Found at i:19052026 original size:27 final size:28
Alignment explanation
Indices: 19051942--19052039 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
19051932 CATGAGATTG
* * * *
19051942 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
19051971 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
19051999 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
19052026 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
19052040 GACGTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:19059968 original size:31 final size:31
Alignment explanation
Indices: 19059932--19059990 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
19059922 TATAACATAT
**
19059932 TTTACTGTGTAATTTGCTATGTAATTTTATA
1 TTTACTGTGTAATTAACTATGTAATTTTATA
19059963 TTTACTGTGTAATTAACTATGTAATTTT
1 TTTACTGTGTAATTAACTATGTAATTTT
19059991 GATTAGAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (31 bp):
TTTACTGTGTAATTAACTATGTAATTTTATA
Found at i:19060772 original size:31 final size:31
Alignment explanation
Indices: 19060737--19060806 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 31
19060727 GATTAGCTCA
*
19060737 TCATATAATAACTTT-GATA-AACATGTGCTTT
1 TCATATAAT-A-TTTCGATATAACATGTGCATT
* *
19060768 TCATATCATATTTCTATATAACATGTGCATT
1 TCATATAATATTTCGATATAACATGTGCATT
19060799 TC-TATAAT
1 TCATATAAT
19060807 CAATCATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
29 3 0.09
30 9 0.27
31 21 0.64
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.44
Consensus pattern (31 bp):
TCATATAATATTTCGATATAACATGTGCATT
Found at i:19063992 original size:33 final size:34
Alignment explanation
Indices: 19063921--19063984 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
19063911 TGCATTTTAT
19063921 ACTGATACTATTACCGAATTGGGCTAAGGCCAAC
1 ACTGATACTATTACCGAATTGGGCTAAGGCCAAC
* * *
19063955 ACTGATATTGTTACTGAA-TGGGCTAAGGCC
1 ACTGATACTATTACCGAATTGGGCTAAGGCC
19063985 CTAACTGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 12 0.44
34 15 0.56
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (34 bp):
ACTGATACTATTACCGAATTGGGCTAAGGCCAAC
Found at i:19066498 original size:48 final size:46
Alignment explanation
Indices: 19066337--19066559 Score: 209
Period size: 48 Copynumber: 4.7 Consensus size: 46
19066327 GGTATAATAT
* * * * *
19066337 CGATGCCATGCCCCAGACATTGTCTTACACTGACTATCGAAATCGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CCATATCG-TGC
* * * *
19066386 CCACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACAC-CATAT-CGTGC
* *
19066436 TGATGCCATGTCCCAGACATGGTCTTACACTGACACCTTTATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACC-ATAT-CGTGC
* *
19066484 CGATGCCATGTCCCAAACATGGTCTTACACTGACA-CATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCATATCGT-GC
*
19066530 CGATG-CATATCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
19066560 GCTTACATCT
Statistics
Matches: 147, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
44 11 0.07
45 15 0.10
46 9 0.06
47 2 0.01
48 44 0.30
49 29 0.20
50 34 0.23
51 3 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCATATCGTGC
Found at i:19066568 original size:46 final size:47
Alignment explanation
Indices: 19066337--19066651 Score: 213
Period size: 46 Copynumber: 6.7 Consensus size: 47
19066327 GGTATAATAT
* * * ** *
19066337 CGATGCCATGCCCCAGACATTGTCTTACACTGAC-TATCGAAATCGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCG-TGC
* * * *
19066386 CCACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGTGC
* * * *
19066436 TGATGCCATGTCCCAGACATGGTCTTACACTGACACCTT-TAT-ACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG---GCTTACATCTCGTGC
* *
19066484 CGATGCCATGTCCCAAACATGGTCTTACACTGAC--ACATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGT-GC
*
19066530 CGATG-CATATCCCAGACAT-GTCTTACACTGGCTTACATCTCAAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC--GTGC
* * * * *
19066576 CGATG-CATGTCCCAGACAT-GTATTACACTAG-TTCTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-ACATCTC-GTGC
*
19066622 CAATG-CATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
19066652 AGCTCTCATA
Statistics
Matches: 218, Mismatches: 31, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
44 14 0.06
45 19 0.09
46 69 0.32
47 9 0.04
48 36 0.17
49 28 0.13
50 35 0.16
51 4 0.02
52 2 0.01
53 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTGC
Found at i:19073199 original size:27 final size:27
Alignment explanation
Indices: 19073167--19073223 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
19073157 ATTGCTTAAA
19073167 ATGACTAAATTGTAAAAGTTATAAAAT
1 ATGACTAAATTGTAAAAGTTATAAAAT
19073194 ATGACTAAATTGTAAAAGTTATAAAAT
1 ATGACTAAATTGTAAAAGTTATAAAAT
19073221 ATG
1 ATG
19073224 TAGTAAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.33
Consensus pattern (27 bp):
ATGACTAAATTGTAAAAGTTATAAAAT
Found at i:19073813 original size:25 final size:25
Alignment explanation
Indices: 19073771--19073819 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
19073761 CTTTATTATT
* *
19073771 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
19073796 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
19073820 GGTCCACTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:19077210 original size:41 final size:41
Alignment explanation
Indices: 19077162--19077264 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 41
19077152 AATGCCGACG
*
19077162 TCTCAGACGTGGTCTTACATC-ATCAAATATCGATGCCACTA
1 TCTCAGACGTGGTCTTACATCAATCAAATAT-GATGCCAATA
*
19077203 TCTCAGACAG-GGTCTTACA-CGAAATCAAATATGATGCCAATG
1 TCTCAGAC-GTGGTCTTACATC--AATCAAATATGATGCCAATA
* *
19077245 TCCCAGATGTGGTCTTACAT
1 TCTCAGACGTGGTCTTACAT
19077265 GTAACTCATA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
40 1 0.02
41 18 0.35
42 24 0.46
43 9 0.17
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (41 bp):
TCTCAGACGTGGTCTTACATCAATCAAATATGATGCCAATA
Found at i:19089525 original size:14 final size:14
Alignment explanation
Indices: 19089506--19089536 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
19089496 TTAGATATAT
19089506 TTATAAAATTATTA
1 TTATAAAATTATTA
*
19089520 TTATAATATTATTA
1 TTATAAAATTATTA
19089534 TTA
1 TTA
19089537 GATAGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATAAAATTATTA
Found at i:19090481 original size:5 final size:5
Alignment explanation
Indices: 19090463--19090494 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
19090453 GGATTCAGTT
19090463 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC T
19090495 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:19090491 original size:15 final size:16
Alignment explanation
Indices: 19090463--19090518 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
19090453 GGATTCAGTT
19090463 TTTTCTTCTTCTTTTC
1 TTTTCTTCTTCTTTTC
19090479 TTTTCTT-TTCTTTTC
1 TTTTCTTCTTCTTTTC
* * *
19090494 TCTTCATCTAC-TTTC
1 TTTTCTTCTTCTTTTC
*
19090509 TCTTCTTCTT
1 TTTTCTTCTT
19090519 TTCCCCCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 25 0.74
16 9 0.26
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTCTTCTTTTC
Found at i:19093617 original size:17 final size:17
Alignment explanation
Indices: 19093595--19093630 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
19093585 TTGGAGTGTA
19093595 AGAAAAGGAAGGATCCT
1 AGAAAAGGAAGGATCCT
19093612 AGAAAAGGAAGGATCCT
1 AGAAAAGGAAGGATCCT
19093629 AG
1 AG
19093631 TTCTCACAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.31, T:0.11
Consensus pattern (17 bp):
AGAAAAGGAAGGATCCT
Found at i:19094173 original size:25 final size:27
Alignment explanation
Indices: 19094144--19094205 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
19094134 TTTTACTGTA
19094144 TTTATTATTACAGATATTT-T-AAATT
1 TTTATTATTACAGATATTTATAAAATT
* * *
19094169 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTACAGATATTTATAAAATT
*
19094196 ATTATTATTA
1 TTTATTATTA
19094206 TAATTATTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 1 0.03
27 13 0.43
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTATTATTACAGATATTTATAAAATT
Found at i:19104970 original size:25 final size:25
Alignment explanation
Indices: 19104928--19104976 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
19104918 CTTTATTATT
* *
19104928 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
19104953 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
19104977 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:19111241 original size:49 final size:49
Alignment explanation
Indices: 19111186--19111423 Score: 314
Period size: 49 Copynumber: 4.8 Consensus size: 49
19111176 TAGCCAAAGC
* *
19111186 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
19111235 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* * * * *
19111285 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* * * *
19111336 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
19111385 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
19111424 CGTGACCTCA
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:19111369 original size:101 final size:98
Alignment explanation
Indices: 19111199--19111430 Score: 320
Period size: 100 Copynumber: 2.3 Consensus size: 98
19111189 CTGGTACGCA
* * * **
19111199 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
** *
19111264 GTACTACACATGTGACCTAACCATCTGATACACG
66 GTACTACACATACGACC-AACCATCCGATACACG
* *
19111298 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
** *
19111363 TAGTACTACACATACGACCAATTATCCGGTACACG
64 TAGTACTACACATACGACCAACCATCCGATACACG
19111398 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
19111431 TCACAATAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.26
100 46 0.39
101 41 0.35
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACATACGACCAACCATCCGATACACG
Found at i:19114657 original size:42 final size:43
Alignment explanation
Indices: 19114594--19114676 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
19114584 TATGATTTAC
*
19114594 GTGTAAGACCATATCTAGGACA-TCGGCATC-ATATTTGATTTT
1 GTGTAAAACCATATCTAGGACAGT-GGCATCAATATTTGATTTT
* *
19114636 GTGTAAAACCCTATCTGGGACAGTGGCATCAATATTTGATT
1 GTGTAAAACCATATCTAGGACAGTGGCATCAATATTTGATT
19114677 ACATGTAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 25 0.69
43 11 0.31
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (43 bp):
GTGTAAAACCATATCTAGGACAGTGGCATCAATATTTGATTTT
Found at i:19118964 original size:25 final size:25
Alignment explanation
Indices: 19118911--19118957 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
19118901 CCAATATTGA
* *
19118911 TATA-GTGATGCAACAATGAGGATG
1 TATAGGTGATACAACAAGGAGGATG
19118935 TATAGGTGATACAACAAGGAGGA
1 TATAGGTGATACAACAAGGAGGA
19118958 GCTATAGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (25 bp):
TATAGGTGATACAACAAGGAGGATG
Found at i:19123915 original size:25 final size:23
Alignment explanation
Indices: 19123859--19123919 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
19123849 TTAACAACAC
*
19123859 TTTCAAACTATTAACCATTTTTA
1 TTTCAAATTATTAACCATTTTTA
19123882 --TCAACAATTATTAACTCATTATTTA
1 TTTC-A-AATTATTAAC-CATT-TTTA
19123907 TTTCAAATTATTA
1 TTTCAAATTATTA
19123920 GCAATGGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
21 2 0.06
22 1 0.03
23 9 0.29
24 4 0.13
25 12 0.39
26 1 0.03
27 2 0.06
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTCAAATTATTAACCATTTTTA
Found at i:19125145 original size:10 final size:9
Alignment explanation
Indices: 19125121--19125154 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
19125111 TTCAAATAAT
19125121 TATAAAAAA
1 TATAAAAAA
19125130 TATAAAAATA
1 TATAAAAA-A
*
19125140 TTTAAAAAA
1 TATAAAAAA
19125149 TATAAA
1 TATAAA
19125155 GAATTATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
TATAAAAAA
Found at i:19125162 original size:10 final size:9
Alignment explanation
Indices: 19125118--19125205 Score: 61
Period size: 10 Copynumber: 9.3 Consensus size: 9
19125108 TTTTTCAAAT
19125118 AATTATAAA
1 AATTATAAA
*
19125127 AAATATAAA
1 AATTATAAA
*
19125136 AATATTTAAA
1 AAT-TATAAA
*
19125146 AAATATAAA
1 AATTATAAA
19125155 GAATTATAAGA
1 -AATTATAA-A
*
19125166 ACTTAT-AA
1 AATTATAAA
* **
19125174 AAGTATTTA
1 AATTATAAA
19125183 AATTATTAAA
1 AATTA-TAAA
19125193 AATTCATAAA
1 AATT-ATAAA
19125203 AAT
1 AAT
19125206 AAAAATAATA
Statistics
Matches: 60, Mismatches: 13, Indels: 11
0.71 0.15 0.13
Matches are distributed among these distances:
8 5 0.08
9 21 0.35
10 32 0.53
11 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.33
Consensus pattern (9 bp):
AATTATAAA
Found at i:19128341 original size:4 final size:4
Alignment explanation
Indices: 19128328--19128357 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
19128318 AATTAAACTC
19128328 TTTA -TTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
19128358 CTTGGTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:19134395 original size:12 final size:12
Alignment explanation
Indices: 19134378--19134407 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
19134368 GAATAAAATT
19134378 TTAAAAATAATA
1 TTAAAAATAATA
19134390 TT-AAAATAATA
1 TTAAAAATAATA
19134401 TTAAAAA
1 TTAAAAA
19134408 ATTGATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TTAAAAATAATA
Found at i:19135717 original size:5 final size:5
Alignment explanation
Indices: 19135700--19135732 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
19135690 TTTCAATTAT
19135700 TATAA TAATAA TATAA TATAA TATAA TATAA TA
1 TATAA T-ATAA TATAA TATAA TATAA TATAA TA
19135733 GATATACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:19136797 original size:17 final size:17
Alignment explanation
Indices: 19136758--19136791 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
19136748 CTTATCTTCG
*
19136758 TAATTAATTTATTTTTA
1 TAATTAATTAATTTTTA
19136775 TAATTAATTAATTTTTA
1 TAATTAATTAATTTTTA
19136792 ATATTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TAATTAATTAATTTTTA
Found at i:19136966 original size:17 final size:16
Alignment explanation
Indices: 19136944--19137002 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 16
19136934 ATTTTTTTAA
19136944 AAAAAATTGAATTATTT
1 AAAAAATTGAATT-TTT
*
19136961 AAAAAATTAAATATTTTT
1 AAAAAATT-GA-ATTTTT
19136979 AAAAGAATTGAATTTTT
1 AAAA-AATTGAATTTTT
*
19136996 CAAAAAT
1 AAAAAAT
19137003 ATAATATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 3 0.08
17 17 0.47
18 9 0.25
19 7 0.19
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (16 bp):
AAAAAATTGAATTTTT
Found at i:19136992 original size:36 final size:36
Alignment explanation
Indices: 19136937--19137010 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 36
19136927 AGTTGGAATT
19136937 TTTTTAAAAAAAATTGAATTATTTAAAAAAT-TAAATA
1 TTTTTAAAAAAAATTGAATT-TTTAAAAAATAT-AATA
* *
19136974 TTTTT-AAAAGAATTGAATTTTTCAAAAATATAATA
1 TTTTTAAAAAAAATTGAATTTTTAAAAAATATAATA
19137009 TT
1 TT
19137011 AATATTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 15 0.44
36 14 0.41
37 5 0.15
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.43
Consensus pattern (36 bp):
TTTTTAAAAAAAATTGAATTTTTAAAAAATATAATA
Found at i:19137001 original size:19 final size:18
Alignment explanation
Indices: 19136937--19137001 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
19136927 AGTTGGAATT
*
19136937 TTTTTAAAAAAAATTGAA
1 TTTTTAAAAAGAATTGAA
*
19136955 TTATTT-AAAA-AATTAAA
1 TT-TTTAAAAAGAATTGAA
*
19136972 TATTTTTAAAAGAATTGAA
1 T-TTTTAAAAAGAATTGAA
19136991 TTTTTCAAAAA
1 TTTTT-AAAAA
19137002 TATAATATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 10 0.26
18 15 0.38
19 14 0.36
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.42
Consensus pattern (18 bp):
TTTTTAAAAAGAATTGAA
Found at i:19140980 original size:189 final size:189
Alignment explanation
Indices: 19140661--19141037 Score: 605
Period size: 189 Copynumber: 2.0 Consensus size: 189
19140651 GAATTGAGCT
* * * * *
19140661 ACCGGAGAGAAGGTTTCTTCTAAATCAACACCATATTGTTGTGCATAACCTTTCGTCACAAGTCT
1 ACCGGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTCGCCACAAGACG
* *
19140726 AGCTTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTTTCTCGAACACCCACTTTAAACCAAT
66 AGCTTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTGTCTCGAACACCCACTTCAAACCAAT
*
19140791 TGCA-TTTTTATCTTCCAGTAAGTCGACCATCTCCCAAGTTCCATTCTTTTT-GATGGAA
131 TGCATTTTTTATCTTCCAGCAAGTCGACCATCTCCCAAGTTCCATT-TTTTTCGATGGAA
*
19140849 ACCGGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTTGCCACAAGACG
1 ACCGGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTCGCCACAAGACG
* *
19140914 AGCTTTGTGCTTTTGGATGCTTCTATCTGCACCAAATTTTGTCTTGAACACCCACTTCAAACCAA
66 AGC-TTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTGTCTCGAACACCCACTTCAAACCAA
* *
19140979 TTGCATTTTTTATCTTCCGGCAAGTCGACCATCTCCTAAGTTCCATTTTTTTCGATGGA
130 TTGCATTTTTTATCTTCCAGCAAGTCGACCATCTCCCAAGTTCCATTTTTTTCGATGGA
19141038 TTCATCTCCT
Statistics
Matches: 173, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
188 62 0.36
189 67 0.39
190 44 0.25
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (189 bp):
ACCGGAGAGAAGGTTTCTTCAAAATCAACACCATATTGCTGTGCATAACCTTTCGCCACAAGACG
AGCTTGTGCTTTTGGATGCTTCCATCTGCACCAAATTTTGTCTCGAACACCCACTTCAAACCAAT
TGCATTTTTTATCTTCCAGCAAGTCGACCATCTCCCAAGTTCCATTTTTTTCGATGGAA
Found at i:19142819 original size:6 final size:6
Alignment explanation
Indices: 19142780--19142816 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
19142770 CCATCATTCT
* *
19142780 TTCCTC TTCCTC TTCCTC TTCCTC TGCCTC TACCTC T
1 TTCCTC TTCCTC TTCCTC TTCCTC TTCCTC TTCCTC T
19142817 ACCATAACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.03, C:0.49, G:0.03, T:0.46
Consensus pattern (6 bp):
TTCCTC
Found at i:19144393 original size:43 final size:43
Alignment explanation
Indices: 19144345--19144433 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
19144335 TAAAGCTGAT
19144345 CAAATTAAAGCACAAGGACTAATTTTATAACTTTCACAAAGTA
1 CAAATTAAAGCACAAGGACTAATTTTATAACTTTCACAAAGTA
19144388 CAAATTAAAGCACAAGGACTAATTTTATAACTTTCACAAAGTA
1 CAAATTAAAGCACAAGGACTAATTTTATAACTTTCACAAAGTA
19144431 CAA
1 CAA
19144434 TGACTAATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (43 bp):
CAAATTAAAGCACAAGGACTAATTTTATAACTTTCACAAAGTA
Found at i:19149726 original size:18 final size:18
Alignment explanation
Indices: 19149688--19149726 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
19149678 ATTTAATTTT
* *
19149688 ATTAATTTAATTACTCTA
1 ATTAATATAATTACTCAA
*
19149706 ATTAATATAATTATTCAA
1 ATTAATATAATTACTCAA
19149724 ATT
1 ATT
19149727 GGTCATTACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATATAATTACTCAA
Found at i:19156556 original size:11 final size:11
Alignment explanation
Indices: 19156540--19156567 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
19156530 CGTCATCTTG
19156540 TTTGATTAATA
1 TTTGATTAATA
19156551 TTTGATTAATA
1 TTTGATTAATA
19156562 TTTGAT
1 TTTGAT
19156568 AAGATGTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (11 bp):
TTTGATTAATA
Found at i:19162316 original size:41 final size:41
Alignment explanation
Indices: 19162264--19162347 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
19162254 TGAATGCTTG
19162264 AGTAATAAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
1 AGTAATAAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
*
19162305 AGTAATCAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
1 AGTAATAAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
19162346 AG
1 AG
19162348 GTATGTGAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (41 bp):
AGTAATAAAATGTGCCATGTTGCATGCTATGATGTGAGGGC
Found at i:19170732 original size:41 final size:41
Alignment explanation
Indices: 19170676--19170895 Score: 318
Period size: 41 Copynumber: 5.3 Consensus size: 41
19170666 ACATAAAACT
* *
19170676 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCT
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
19170717 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
19170760 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
19170801 TGCTAGGCAATAAGCCTGATTTAATACACTGGCACAAAGAC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
19170842 TGCTAGGCAATAAGCCTGGTTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
19170883 TGCTAGGCAATAA
1 TGCTAGGCAATAA
19170896 AGCCCGAATA
Statistics
Matches: 165, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
41 124 0.75
42 3 0.02
43 38 0.23
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:19170879 original size:82 final size:83
Alignment explanation
Indices: 19170676--19170895 Score: 327
Period size: 84 Copynumber: 2.7 Consensus size: 83
19170666 ACATAAAACT
* * *
19170676 TGCTAGGC-ATAAAGCCTAGTATAATACACCGGCACAGAGCTTGCTAGGCAATAAGCCTGATATA
1 TGCTAGGCAAT-AAGCCTGGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATA
* *
19170740 ATACACCGGCATATAAAGCC
65 ATACACCGGCA-ACAAAGAC
* *
19170760 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAA
1 TGCTAGGCAATAAGCCTGGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
*
19170825 TACACTGGC-ACAAAGAC
66 TACACCGGCAACAAAGAC
*
19170842 TGCTAGGCAATAAGCCTGGTTTAATACACCGGCACAAAGCCTGCTAGGCAATAA
1 TGCTAGGCAATAAGCCTGGTATAATACACCGGCACAAAGCCTGCTAGGCAATAA
19170896 AGCCCGAATA
Statistics
Matches: 125, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
82 58 0.46
84 65 0.52
85 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (83 bp):
TGCTAGGCAATAAGCCTGGTATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACCGGCAACAAAGAC
Found at i:19175344 original size:50 final size:50
Alignment explanation
Indices: 19175218--19175499 Score: 298
Period size: 50 Copynumber: 5.6 Consensus size: 50
19175208 GTTGTGAGAA
* * *** * *
19175218 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGGT
19175270 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * * * * * *
19175320 CGCATGTGTAGTACTAATTTCAGGCTACTATGCGTACCCGAAAGTTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATGGTT-AGGT
* * * *
19175371 CACGTGTGTATTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * *
19175421 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
*
19175470 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
19175500 TGCATACCAT
Statistics
Matches: 191, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
49 32 0.17
50 85 0.45
51 35 0.18
52 39 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:19175402 original size:101 final size:101
Alignment explanation
Indices: 19175218--19175499 Score: 320
Period size: 101 Copynumber: 2.8 Consensus size: 101
19175208 GTTGTGAGAA
* * *** *
19175218 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT--TTAAAATGGTTTTAAGTCACATGTGTAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA--GTTTCAA-TCACATGTGTAG
19175281 TACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
63 TACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * *
19175320 CGCATGTGTAGTACTAATTTCAGGCTACTATGCGTACCCGAAAGTTTCAATCACGTGTGTATTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCAATCACATGTGTAGTAC
* *
19175385 TAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGT
66 TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * ** ** *
19175421 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TT-GGTCGCATGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCAATCACATGTGTAGTAC
19175484 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
19175500 TGCATACCAT
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
99 27 0.18
100 2 0.01
101 83 0.55
102 36 0.24
104 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAGTTTCAATCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:19175732 original size:16 final size:15
Alignment explanation
Indices: 19175711--19175740 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
19175701 GAATGGAGTA
19175711 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
19175727 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
19175741 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:19177750 original size:20 final size:20
Alignment explanation
Indices: 19177725--19177776 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
19177715 TGGGCAGACG
*
19177725 ACACGGGTGTGTCCCAAACC
1 ACACGGGCGTGTCCCAAACC
19177745 ACACGGGCGTGTCCCAAACC
1 ACACGGGCGTGTCCCAAACC
19177765 ACACGGGCGTGT
1 ACACGGGCGTGT
19177777 GTAACCACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.35, G:0.29, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAACC
Found at i:19187221 original size:40 final size:40
Alignment explanation
Indices: 19187173--19187378 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
19187163 AGACTAAGAT
19187173 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
19187213 TCGAAGGCATTTGTGATAGTGACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
19187253 CCGAAGGCATTTGTTCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
19187293 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
19187333 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
*
19187372 TCGAAGG
1 CCGAAGG
19187379 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.09
40 136 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:19191972 original size:27 final size:27
Alignment explanation
Indices: 19191942--19192119 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
19191932 ATATTGAGCC
* * * *
19191942 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
19191969 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
19191996 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
19192024 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
19192051 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
19192078 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
19192105 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
19192120 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:19192081 original size:82 final size:81
Alignment explanation
Indices: 19191963--19192118 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
19191953 TGCTATATAA
* * * *
19191963 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
19192028 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
19192045 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
19192109 CACTTAGTGC
65 CACTTAGTGC
19192119 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:19199945 original size:27 final size:27
Alignment explanation
Indices: 19199914--19200091 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
19199904 TATATTGAGC
* * * *
19199914 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
19199941 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
19199968 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
19199996 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
19200023 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
19200050 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
19200077 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
19200092 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:19200053 original size:82 final size:81
Alignment explanation
Indices: 19199935--19200090 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
19199925 TGCTATATAA
* * * *
19199935 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
19200000 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
19200017 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
19200081 CACTTAGTGC
65 CACTTAGTGC
19200091 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:19213606 original size:27 final size:27
Alignment explanation
Indices: 19213572--19213749 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
19213562 TAAATTGTAC
19213572 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
19213599 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
19213625 ATGCACTAAGTGTGCGAATTGACCATG-
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
19213652 ACGGCACTAAGTGTGCGAGTCTAACTATGT
1 A--GCACTAAGTGTGCGA-TTTGACTATGT
* *
19213682 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19213709 AGCACTAAGTGTGCGAGTTGATTA-AT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
19213735 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
19213750 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
26 15 0.12
27 75 0.59
28 30 0.24
29 6 0.05
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:19213697 original size:83 final size:82
Alignment explanation
Indices: 19213573--19213729 Score: 217
Period size: 83 Copynumber: 1.9 Consensus size: 82
19213563 AAATTGTACA
* * * *
19213573 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
19213637 TGCGAATTGACCATGACG
65 TGCGAATTGACCATGACG
** *
19213655 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
19213720 TGCGAGTTGA
65 TGCGAATTGA
19213730 TTAATAGCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
82 15 0.23
83 49 0.75
84 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (82 bp):
GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGACG
Found at i:19247056 original size:145 final size:143
Alignment explanation
Indices: 19246760--19247131 Score: 441
Period size: 145 Copynumber: 2.6 Consensus size: 143
19246750 AAAGGGTAAG
* * * * *
19246760 ATGCCGATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATTTCG-GTGCCGATTG-CAT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGG--CTCATATATCGAG-GCTGA-TGCCAT
* *
19246823 GTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCCAAACATAGTCTT
62 GTCCCAGACATGGTCTTACACTAGCCCACATG-CGAGGCCGATGCCATGTCCCAAACATAGTCTT
*
19246888 ACACTAGCTCACATATCA
126 ACACTAGCACACATATCA
*
19246906 ATGCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
* * * * *
19246971 CAGATATGGTCTTACACTAGCTCTCCTACATG-G-TGCCGATGCCATGTCGCAGACATGGTCTTA
66 CAGACATGGTCTTACACTAG--C-CC-ACATGCGAGGCCGATGCCATGTCCCAAACATAGTCTTA
* *
19247034 CA-TTG-ACACATATAATA
127 CACTAGCACACATAT--CA
*
19247051 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAGGCTGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
*
19247116 TAGACATGGTCTTACA
66 CAGACATGGTCTTACA
19247132 TTGGCTCACA
Statistics
Matches: 198, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
143 9 0.05
144 40 0.20
145 107 0.54
146 35 0.18
147 2 0.01
148 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (143 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
CAGACATGGTCTTACACTAGCCCACATGCGAGGCCGATGCCATGTCCCAAACATAGTCTTACACT
AGCACACATATCA
Found at i:19247137 original size:48 final size:47
Alignment explanation
Indices: 19246762--19247139 Score: 298
Period size: 48 Copynumber: 7.8 Consensus size: 47
19246752 AGGGTAAGAT
* *
19246762 GCCGATGCCACGTCCCAGACATGGTCTTACACTGGCTC-TCATATTTCG-G
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTGGCTCAT-ATA-TT-GAG
* * * * *
19246811 TGCCGATTG-CATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAG
1 -GCCGA-TGCCATG-TCCAAACATGGTCTTACACTGGCTCATATATTGAG
* * * ** *
19246860 GCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCACATATCAAT
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTGGCTCATATATTGAG
* *
19246908 GCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTGGCTCATATATTGAG
* * * * * *
19246956 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTC-TCCTACATG-G
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTGGCTCAT-ATA-TTGAG
* * * * * * *
19247004 TGCCGATGCCATGTCGCAGACATGGTCTTACATTGACACATATAATAAT
1 -GCCGATGCCATGTC-CAAACATGGTCTTACACTGGCTCATATATTGAG
19247053 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTGGCTCATATATTGAG
* * *
19247101 GCTGATGCCATGTCCTAGACATGGTCTTACATTGGCTCA
1 GCCGATGCCATGTCC-AAACATGGTCTTACACTGGCTCA
19247140 CACAACTCTA
Statistics
Matches: 267, Mismatches: 45, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
47 8 0.03
48 186 0.70
49 38 0.14
50 32 0.12
51 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCAAACATGGTCTTACACTGGCTCATATATTGAG
Found at i:19248156 original size:17 final size:17
Alignment explanation
Indices: 19248134--19248173 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
19248124 AAAACTTTTT
19248134 CCCTTTATGCGATTTAG
1 CCCTTTATGCGATTTAG
19248151 CCCTTTATGCGATTTAG
1 CCCTTTATGCGATTTAG
*
19248168 TCCTTT
1 CCCTTT
19248174 TTCGCAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.45
Consensus pattern (17 bp):
CCCTTTATGCGATTTAG
Found at i:19252513 original size:48 final size:48
Alignment explanation
Indices: 19252441--19252675 Score: 202
Period size: 48 Copynumber: 4.9 Consensus size: 48
19252431 TAATATCAAT
*
19252441 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * * * * *
19252489 GCTGATGCCATGTCCCATATATGGTCTTACACTAGCTCTTATACATCG-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC--ACATATCGAG
* * * * * * * * *
19252538 TGCCGATGCCATGTCCTAGACATGGTCTTACATTGACACATATAACAAT
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
19252587 GCTGAAGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
19252635 GCCAATGCCATGTCTCAGATATAGTCTTACACTGGCTCACA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACA
19252676 CAACCCTAGT
Statistics
Matches: 141, Mismatches: 42, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
48 104 0.74
49 1 0.01
50 36 0.26
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAG
Found at i:19252611 original size:98 final size:98
Alignment explanation
Indices: 19252440--19252625 Score: 239
Period size: 98 Copynumber: 1.9 Consensus size: 98
19252430 CTAATATCAA
* * * * *
19252440 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCC
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGACACACATAACAAGGCTGAAGCCATGTCCC
* *
19252505 ATATATGGTCTTACACTAGCTCTTATACATCGG
66 AAACATGGTCTTACACTAGCTCTTATACATCGG
* * * * *
19252538 TGCCGATGCCATG-TCCTAGACATGGTCTTACATTGACACATATAACAATGCTGAAGCCATGTTC
1 TGCCGATGCCATGTTCC-AAACATGGTCTTACACTGACACACATAACAAGGCTGAAGCCATGTCC
*
19252602 CAAACATGGTCTTACACTGGCTCT
65 CAAACATGGTCTTACACTAGCTCT
19252626 CATATTGAGG
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
97 3 0.04
98 71 0.96
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (98 bp):
TGCCGATGCCATGTTCCAAACATGGTCTTACACTGACACACATAACAAGGCTGAAGCCATGTCCC
AAACATGGTCTTACACTAGCTCTTATACATCGG
Found at i:19267256 original size:17 final size:17
Alignment explanation
Indices: 19267234--19267267 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
19267224 CTACTAGGAT
19267234 ATCAATTAGTACGAGTG
1 ATCAATTAGTACGAGTG
*
19267251 ATCAATTAGTATGAGTG
1 ATCAATTAGTACGAGTG
19267268 CATTTTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (17 bp):
ATCAATTAGTACGAGTG
Found at i:19271480 original size:53 final size:53
Alignment explanation
Indices: 19271297--19271504 Score: 206
Period size: 55 Copynumber: 3.8 Consensus size: 53
19271287 AGTAAGGTTT
* *
19271297 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAACGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
19271352 AAGGATGCCATGTAATACCATGTCAAGGCATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-C-ATAAGGC
* * *
19271407 AA--ATGTCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGT
1 AAGGAT-AC-CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
* * * * *
19271460 AAGGATACTATGTAAGACCATGTCGAGACATGGCAGTGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
19271505 TCAAAAGGAT
Statistics
Matches: 127, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 10 0.08
55 72 0.57
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
Found at i:19271503 original size:108 final size:110
Alignment explanation
Indices: 19271305--19271504 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 110
19271295 TTAAGGATAC
* *
19271305 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAACGCAAGGATGCCATGTAATAC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGAC
* *
19271370 CATGTCAAGGCATGGCATTGATAAGTTACTATAAGGCAAATGTCT
66 CATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAATGTCT
* * * * *
19271415 CATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGTAAGGATACTATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAACGCAAGGATACCATGTAAGA
* *
19271477 CCATGTCGAGACATGGCAGTGGTAAGTT
65 CCATGTCAAGACATGGCAGTGATAAGTT
19271505 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 43 0.55
109 7 0.09
110 25 0.32
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGAC
CATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAATGTCT
Found at i:19271764 original size:16 final size:16
Alignment explanation
Indices: 19271743--19271773 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19271733 ATAAATTTGA
19271743 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
19271759 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
19271774 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:19279099 original size:55 final size:53
Alignment explanation
Indices: 19278985--19279194 Score: 185
Period size: 55 Copynumber: 3.9 Consensus size: 53
19278975 TTAAGGATAC
* * * *
19278985 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAACGC-AAGGATGC-
1 CATGTAAGACCATACCAAGACATGGC-ATTGATAA-G-TTCATAAGGCAAAGG-T-CT
* ** *
19279040 CATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTCT
1 CATGTAAGACCATACCAAGACATGGCATTGATAAGTT-C-ATAAGGCAAAGGTCT
* * * *
19279095 CATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTCATAAGGTAAAGGTCT
1 CATGTAAGACCATACCAAGACATGGCATTGATAAGTTCATAAGGCAAAGGTCT
* * *
19279148 CATGTAAGACCATACAAATG-CATGGCATTGGTGAGTTCATAAGGCAA
1 CATGTAAGACCATACCAA-GACATGGCATTGATAAGTTCATAAGGCAA
19279195 GGATACCATG
Statistics
Matches: 133, Mismatches: 16, Indels: 14
0.82 0.10 0.09
Matches are distributed among these distances:
52 2 0.02
53 58 0.44
54 10 0.08
55 60 0.45
56 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (53 bp):
CATGTAAGACCATACCAAGACATGGCATTGATAAGTTCATAAGGCAAAGGTCT
Found at i:19279156 original size:53 final size:52
Alignment explanation
Indices: 19278985--19279213 Score: 203
Period size: 53 Copynumber: 4.2 Consensus size: 52
19278975 TTAAGGATAC
* * *
19278985 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAACGCAAGGATGC-
1 CATGTAAGACCATACCAAGGCATGGC-ATTGGTAA-G-TTCATAAGGAAAGG-T-CT
* ** * * *
19279040 CATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTCT
1 CATGTAAGACCATACCAAGGCATGGCATTGGTAAGTT-C-ATAAGG-AAAGGTCT
*
19279095 CATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTCATAAGGTAAAGGTCT
1 CATGTAAGACCATACCAAGGCATGGCATTGGTAAGTTCATAAGG-AAAGGTCT
* * * *
19279148 CATGTAAGACCATACAAATGCATGGCATTGGTGAGTTCATAAGGCAAGGATAC-
1 CATGTAAGACCATACCAAGGCATGGCATTGGTAAGTTCATAAGGAAAGG-T-CT
*
19279201 CATGTATGACCAT
1 CATGTAAGACCAT
19279214 GTCGAGACAT
Statistics
Matches: 148, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
52 6 0.04
53 70 0.47
54 10 0.07
55 59 0.40
56 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (52 bp):
CATGTAAGACCATACCAAGGCATGGCATTGGTAAGTTCATAAGGAAAGGTCT
Found at i:19279497 original size:16 final size:16
Alignment explanation
Indices: 19279476--19279506 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19279466 ATAAATTTGA
19279476 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
19279492 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
19279507 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:19280771 original size:23 final size:22
Alignment explanation
Indices: 19280745--19280851 Score: 69
Period size: 22 Copynumber: 4.8 Consensus size: 22
19280735 GGTGTTACAT
19280745 AGCTCGTAAGAGCTTACTGTTTC
1 AGCTCGTAAGAGCTTACTG-TTC
** *
19280768 AGCTCGTTGGAGCTTATTGTTC
1 AGCTCGTAAGAGCTTACTGTTC
* *
19280790 AGCAT-ATTAGAGCTTACCT-TGTC
1 AGC-TCGTAAGAGCTTA-CTGT-TC
* *
19280813 AGCTC-AATAGAGATTACTGTTC
1 AGCTCGTA-AGAGCTTACTGTTC
19280835 AGCTCG-AAGGAGCTTAC
1 AGCTCGTAA-GAGCTTAC
19280852 CGACCATGAC
Statistics
Matches: 66, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
21 1 0.02
22 34 0.52
23 31 0.47
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (22 bp):
AGCTCGTAAGAGCTTACTGTTC
Found at i:19286163 original size:40 final size:40
Alignment explanation
Indices: 19286126--19286310 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
19286116 GCTACTCGTT
*
19286126 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
19286166 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
19286206 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
19286245 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
19286286 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19286311 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:19286294 original size:79 final size:80
Alignment explanation
Indices: 19286126--19286308 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
19286116 GCTACTCGTT
* **
19286126 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
19286190 GATTTAGTAACTCGCA
65 AATATAGTAACTAGCA
* **
19286206 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
19286269 AATATGGTCACTTAGCA
65 AATATAGTAAC-TAGCA
19286286 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
19286309 GACATCATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 32 0.36
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCA
Found at i:19293619 original size:39 final size:40
Alignment explanation
Indices: 19293498--19293682 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
19293488 GCTACTCGTT
*
19293498 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
19293538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
19293578 CAAATGCCTTCGGGA-TTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
19293617 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
19293658 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19293683 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:19293666 original size:79 final size:80
Alignment explanation
Indices: 19293498--19293682 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
19293488 GCTACTCGTT
* * *
19293498 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
19293562 GATTTAGTAACTCGCA
65 GATATAGTAACTAGCA
* * **
19293578 CAAATGCCTTCGGGA-TTAGCTCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
* *
19293641 GATATGGTCACTTAGCA
65 GATATAGTAAC-TAGCA
19293658 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19293683 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCA
Found at i:19305171 original size:40 final size:40
Alignment explanation
Indices: 19304974--19305190 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
19304964 CGGATGATAA
* * *
19304974 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
19305014 CCGGGCTAAG-CCTGAAGGCAATT-GTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
19305052 CCGGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CC-GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
19305093 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
19305133 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
19305173 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
19305191 TACTTGGCTT
Statistics
Matches: 153, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 43 0.28
40 106 0.69
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:19305176 original size:80 final size:79
Alignment explanation
Indices: 19304973--19305190 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 79
19304963 TCGGATGATA
* * * *
19304973 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCTGAAGGCAA
1 ACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGGCAA
*
19305035 TTGTGCGAGTTATTAT
64 TTGTGCGAGTTACTAT
* *
19305051 ACCGGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-
1 ACC-GGGCT-ATGTCCCGAAGGCATTCGTGCGAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCA
19305113 ATTGGTGCGAGTTACTAT
63 ATT-GTGCGAGTTACTAT
* * *
19305131 ATCCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 A-CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGG
19305191 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
78 3 0.03
79 58 0.49
80 55 0.47
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
ACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGGCAATT
GTGCGAGTTACTAT
Found at i:19305186 original size:119 final size:118
Alignment explanation
Indices: 19304974--19305190 Score: 271
Period size: 119 Copynumber: 1.8 Consensus size: 118
19304964 CGGATGATAA
* * * *
19304974 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCTGAAGGCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
* *
19305039 GCGAGTTATTATACCGGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
66 GCGAGTTACTATACC-GGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
* *
19305093 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
*
19305156 CGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 -GAGCGAGTTA-CTATA-CCGGGCTAAATCCCGAAGG
19305191 TACTTGGCTT
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
118 2 0.02
119 62 0.74
120 18 0.21
121 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
GCGAGTTACTATACCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
Found at i:19307497 original size:29 final size:29
Alignment explanation
Indices: 19307439--19307538 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
19307429 ATAGTAAGTC
19307439 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
19307467 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
19307496 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
19307524 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
19307539 ATGCAATTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
28 39 0.58
29 28 0.42
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:19307537 original size:28 final size:28
Alignment explanation
Indices: 19307439--19307566 Score: 168
Period size: 29 Copynumber: 4.5 Consensus size: 28
19307429 ATAGTAAGTC
*
19307439 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
19307467 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
19307496 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** *
19307524 TGCACACTTAGTGCTATGCAATTTAAAC-
1 CGCACACTTAGTGCTATATAA-TCAAACT
19307552 CTGCACACTTAGTGC
1 C-GCACACTTAGTGC
19307567 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:19316680 original size:210 final size:209
Alignment explanation
Indices: 19316291--19316709 Score: 624
Period size: 210 Copynumber: 2.0 Consensus size: 209
19316281 ATTATTGGCA
19316291 GTGAAAGTGTGTCAGGTAGTAAATTATCGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACT
1 GTGAAAGTGTGTCAGGTAGTAAATTATCGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACT
* * ** *
19316356 ACTAACTAGTTTCTATTACAATGTGCGATGAGACTAAAAGTTGAATGTTGGAGACAAATGAGTAG
66 ACTAACTAGTTTCTATTACAATGTGCGATGAGACTAAAAGCTAAATGTCAGAGACAAATGAGCAG
* * * * * * *
19316421 CGATGCTTGAGGACTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGACTGGGTGAATGG
131 CGACGCTGGAGGACTCTGAGCATGGTGGGGGTGTTGTCTTTACGAATGAGTAAATGGGTGAATAG
19316486 GGGAACTAAGGTTG
196 GGGAACTAAGGTTG
* *
19316500 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTGTCAGGTAGT-AAATTATCGTATGCATTATCATAATAAGTAGTTTTTTTAGTAAC
* * * *
19316565 TACTAACTAGTTGT-TATTTCAATGTGCGATGAGATTGAAGGCTAAATGTCAGAGACAAATGAGC
65 TACTAACTAGTT-TCTATTACAATGTGCGATGAGACTAAAAGCTAAATGTCAGAGACAAATGAGC
* * *
19316629 AGCGACGCTGGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGCGAATGAGTAAATGGGTGAGT
129 AGCGACGCTGGAGGACTCTGAGCATGGTGGGGGTGTTGTCTTTACGAATGAGTAAATGGGTGAAT
19316694 AGGGGAACTAAGGTTG
194 AGGGGAACTAAGGTTG
19316710 CAGAATTTGC
Statistics
Matches: 187, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
209 19 0.10
210 167 0.89
211 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.30, T:0.32
Consensus pattern (209 bp):
GTGAAAGTGTGTCAGGTAGTAAATTATCGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACT
ACTAACTAGTTTCTATTACAATGTGCGATGAGACTAAAAGCTAAATGTCAGAGACAAATGAGCAG
CGACGCTGGAGGACTCTGAGCATGGTGGGGGTGTTGTCTTTACGAATGAGTAAATGGGTGAATAG
GGGAACTAAGGTTG
Found at i:19317538 original size:209 final size:209
Alignment explanation
Indices: 19317167--19317779 Score: 818
Period size: 209 Copynumber: 2.9 Consensus size: 209
19317157 ATTATTGGTA
* *
19317167 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTATTTTAGTAA
1 GTGAAAGTGTGTCAGGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
* *
19317231 CTACTAACTAGTTGTTATTACAATGTGTGATGAGACTGAAGGCTAAATGTTGGAGACAAATGAGT
66 CTACTAACTAGTTGTTATTACAATGTGCGAT-AGACTGAAGGCTGAATGTTGGAGACAAATGAGT
* * *
19317296 AGCGACGCTGGAGGTCTGTGAACGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGACA-GGGTGAG
130 AGCGACGCTGGA-GTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGA-ATGGATGAG
*
19317360 TAGGGGAACTGAGGTTG
193 TAGGGGAACTGAGGCTG
* * *
19317377 GTGCAAGTGTGTTAGGTGGTAAAATTATTTTATACATTATCATAATAAGTAGTTTTTTTTAGTAA
1 GTGAAAGTGTGTCAGGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
* * *
19317442 CTATTAACTAGTTGTTATTACAATGTGCGAT-GACCGAAGGCTGAATGTTAGAGACAAATGAGTA
66 CTACTAACTAGTTGTTATTACAATGTGCGATAGACTGAAGGCTGAATGTTGGAGACAAATGAGTA
* *
19317506 ACGACGCTGGAGATCTCTGAGCGTGGTGGGGGTGATGTCTTTGTGAATGAGTGAATGGATGAGTA
131 GCGACGCTGGAG-TCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGATGAGTA
19317571 GGGGAACTGAGGCTG
195 GGGGAACTGAGGCTG
*
19317586 GTGAAAGTGTGTCAGGTGGTAAAATGGTAAAATTATTGCATGCATTATCATAGTAAGTAGTTTCT
1 GTGAAAGTGTGTCAGGTGGTAAAAT--T---ATT-TT--ATGCATTATCATAATAAGTAGTTT-T
* * * *
19317651 TTTTAGTAACTACTAACTAGTCGTTATTACAATGTGCAATAAAACTGAAAGCTGAATGTTGGAGA
57 TTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGAT-AGACTGAAGGCTGAATGTTGGAGA
** * * * * *
19317716 CAAATGAGTAGCGGTGCTGGATGTCTTTGAGTGTGGTAGGGGTGTTATCTTTGTGAATGGGTGA
121 CAAATGAGTAGCGACGCTGGA-GTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGA
19317780 GTGGGGGAAT
Statistics
Matches: 352, Mismatches: 36, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
208 2 0.01
209 123 0.35
210 48 0.14
211 41 0.12
214 3 0.01
215 2 0.01
217 22 0.06
218 38 0.11
220 72 0.20
221 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.30, T:0.33
Consensus pattern (209 bp):
GTGAAAGTGTGTCAGGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
CTACTAACTAGTTGTTATTACAATGTGCGATAGACTGAAGGCTGAATGTTGGAGACAAATGAGTA
GCGACGCTGGAGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGATGAGTAG
GGGAACTGAGGCTG
Found at i:19318619 original size:209 final size:210
Alignment explanation
Indices: 19318259--19318657 Score: 638
Period size: 209 Copynumber: 1.9 Consensus size: 210
19318249 TTGGCAGTGG
*
19318259 AAGTGTGTCAGGTGATAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAACTACT
1 AAGTGTGTCAGGTGATAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAACTACG
* * *
19318324 AACTAGTTGTTATTACAATGTGCGATGAGTCTGAAGGCTGAATGTTGGAGACAAATGAATAGCGA
66 AACTAGTTGTTATTACAATGTGCGATGAGACTCAAGGCTGAATGTTGGAAACAAATGAATAGCGA
**
19318389 TGTTGAAGGTCTCTGAGCGTGGT-AGGGTGTTATCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
131 CATTGAAGGTCTCTGAGCGTGGTGAGGGTGTTATCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
19318453 AGCTGAGGTTGGTGA
196 AGCTGAGGTTGGTGA
* * *
19318468 AAGTGTGTCAGGTGGTAAATTTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACG
1 AAGTGTGTCAGGTGATAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAACTACG
* * * *
19318533 AACTAGTTGTTATTACAATGTGCGATGAGACTCAAGTCTGAATGTTGGAAATAAATGAGTAGTGA
66 AACTAGTTGTTATTACAATGTGCGATGAGACTCAAGGCTGAATGTTGGAAACAAATGAATAGCGA
* * * *
19318598 CATTGGAGGTCTCTTAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
131 CATTGAAGGTCTCTGAGCGTGGTGAGGGTGTTATCTTTGTGAATGAGTGAATGGGTGAGT
19318658 GGAGGAATTG
Statistics
Matches: 172, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
209 138 0.80
210 34 0.20
ACGTcount: A:0.28, C:0.08, G:0.29, T:0.34
Consensus pattern (210 bp):
AAGTGTGTCAGGTGATAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAACTACG
AACTAGTTGTTATTACAATGTGCGATGAGACTCAAGGCTGAATGTTGGAAACAAATGAATAGCGA
CATTGAAGGTCTCTGAGCGTGGTGAGGGTGTTATCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
AGCTGAGGTTGGTGA
Found at i:19319515 original size:211 final size:209
Alignment explanation
Indices: 19319131--19319550 Score: 556
Period size: 211 Copynumber: 2.0 Consensus size: 209
19319121 ATTATTGGCA
* * * * * *
19319131 GTGAAAGTGTGACAAGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGATTTTTTTAGTAA
1 GTGAAAGTATGACAAGTGCTAAAACTATTGTATGAATTATCATAATAAGTAGATTTTTTTACTAA
19319196 CTATTAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAG
66 CTATTAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAG
* * * *
19319261 CGACGCTGGAGGTCTCTGAATGTTGTGGGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAG
131 CAACGCTGGAGGTCTCTGAACGTGGTGAGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAG
19319326 GGGAACTGAGGTTG
196 GGGAACTGAGGTTG
* * *
19319340 GTGAAAGTATGTCAGGTGCTAAAACTATTGTATGAATTATCATAATAAGTA-CTTTCTTTTACTA
1 GTGAAAGTATGACAAGTGCTAAAACTATTGTATGAATTATCATAATAAGTAGATTT-TTTTACTA
* **
19319404 ACTACTT-ACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGGTGAATGTTGGAGACAAATGA
65 ACTA-TTAACTAGTTGTTATTACAATGTGCGAT--GACTGAAGGCTGAATGTCAGAGACAAATGA
* * * ** * *
19319468 GCAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGAATGGTTGA
127 GCAGCAACGCTGGAGGTCTCTGAACGTGGTGAGGGTGTTACCTTTGTGAATAAGTGAATGGGTGA
* * *
19319533 GTGGGGGAATTGTGGTTG
192 GTAGGGGAACTGAGGTTG
19319551 TAGAATTTAC
Statistics
Matches: 181, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
208 3 0.02
209 80 0.44
210 2 0.01
211 96 0.53
ACGTcount: A:0.28, C:0.10, G:0.29, T:0.33
Consensus pattern (209 bp):
GTGAAAGTATGACAAGTGCTAAAACTATTGTATGAATTATCATAATAAGTAGATTTTTTTACTAA
CTATTAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAG
CAACGCTGGAGGTCTCTGAACGTGGTGAGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAG
GGGAACTGAGGTTG
Found at i:19319663 original size:877 final size:876
Alignment explanation
Indices: 19317381--19321072 Score: 4658
Period size: 876 Copynumber: 4.2 Consensus size: 876
19317371 AGGTTGGTGC
* * * *
19317381 AAGTGTGTTAGGTGGTAAAATTATTTTATACATTATCATAATAAGTAGTTTTTTTTAGTAACTAT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTTTTTTAGTAACTAC
* * * *
19317446 TAACTAGTTGTTATTACAATGTGCGATGACCGAAGGCTGAATGTTAGAGACAAATGAGTAACGAC
65 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGAT
* * *
19317511 GCTGGAGATCTCTGAGCGTGGTGGGGGTGATGTCTTTGTGAATGAGTGAATGGATGAGTAGGGGA
130 GCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGA
* *
19317576 ACTGAGGCTGGTGAAAGTGTGTCAGGTGGTAAAATGGTAAAATTATTGCATGCATTATCATAGTA
195 ACTGAGGTTGGTGAAAGTGTGTCA---GG-----TGGTAAAATTATTGCATGCATTATCATAATA
* * * * *
19317641 AGTAGTTTCTTTTTAGTAACTACTAACTAGTCGTTATTACAATGTGCAATAAAACTGAAAGCTGA
252 AGTAG-TT-TTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGA
** * * *
19317706 ATGTTGGAGACAAATGAGTAGCGGTGCTGGATGTCTTTGAGTGTGGT-AGGGGTGTTATCTTTGT
315 ATGTTGGAGACAAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGA-GGGTGTTGTCTTTGT
* * *
19317770 G-A--A-TG---GG-TGAGTGGGGGAATTGAGGTTGTAGTATTTGCAGAAGGTAAAGAAGCGAAA
379 GAATGAGTGAATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTACAGAAGGTAGAGAAGCGAAA
* * * * * * *
19317827 AGTAGCAGTGGCTACTAAAGATTGGCGAAGAAG-AAGAAACTAAGCAGAATGTAAAAAGGCAACA
444 AGTAGCAGCGGCAACTAACGACTAGCGAAGAAGCAA-AAACTAAGCAGAAGGTAAAAAAGCAACA
* * * * * *
19317891 ATGACGGCAATGACAACAAAAAAAATGAAAAGCAA-AAAAAGACAGAGAAGCAACGATAGTGGCA
508 ATGGCAGCAATGACAACGAAAAAAATGAAAACCAATAAAAAGACAGAGAAGCAACAATGGTGGCA
* * *
19317955 ACACCAAAGAAGTAATAAATAAGGAAAAATTTAAGGATCAGGGATTAAGGAAGGAAAAATAAGGA
573 ACACCAAAGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGGGA
* * *
19318020 TTGGGAAGAGAAAGGGGAATATAAAGACTGGGTC-AGCTGGGAAGTGGGAATAAGGGAAAAACTT
638 TTGGGAAGGGAAAGGGGAATATAAAGACTAGGTCTA-CTGGGAAGTGGGAACAAGGGAAAAACTT
* *
19318084 TTAGGTTAATAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCATTCGAAGCCTGACCAATTTTT
702 TTAGGTTAATAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTT
** * * *
19318149 AAAATAGACTGGTAGTGCAATACATACAATAATTCTTTATGAAAAAAATTCACTAAAACCTAGAA
767 AAAACGGACTGGTAGTGCAATACATACAATAAATCTCTATGAAAAAAATTCACTAAAACCAAGAA
*
19318214 AAATGAGATCATATTATATTCCACAGTAAAGATTATTGGCAGTGG
832 AAATGAGATCATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* *
19318259 AAGTGTGTCAGGTGATAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
*
19318324 AACTAGTTGTTATTACAATGTGCGATGAGTCTGAAGGCTGAATGTTGGAGACAAATGAATAGCGA
66 AACTAGTTGTTATTACAATGTGCGATGA--CTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGA
* * * *
19318389 TGTTGAAGGTCTCTGAGCGTGGT-AGGGTGTTATCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
129 TGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
* * *
19318453 AGCTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAATTTATTGTATGCATTATCATAATAAGTAGTT
194 AACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTT
* * * *
19318518 TTTTTAGTAACTACGAACTAGTTGTTATTACAATGTGCGATGAGACTCAAGTCTGAATGTTGGAA
259 TTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAG
* * *
19318583 ATAAATGAGTAGTGACAT--TGGAGGTCTCTT-AGCGTGGTGGGGGTGTTGTCTTTGTGAATGAG
324 ACAAATGAGTAG-CA-ATGCTGGAGGTCT-TTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAG
* * * *
19318645 TGAATGGGTGAGTGGAGGAATTGAGGTTGTAGAATTTACAGAAGGTGGAGAAGCGAAAAGTAGTA
386 TGAATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTACAGAAGGTAGAGAAGCGAAAAGTAGCA
* * * * *
19318710 GCGGCAACTAACGACTAGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGTAACAATTGCAGC
451 GCGGCAACTAACGACTAGCGAAGAAGCAAAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGC
* * * * *
19318775 AATAACAACGAAATAACTGAAAACCAATAAAAAGA-AGAGAA-TAACAATGGTGGCAACACCGAA
516 AATGACAACGAAAAAAATGAAAACCAATAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAA
* *
19318838 GAAGCAATAAATAAAGAAAAATTTAAGGATTAGGGATTAAGGAA-GAGAAAATAGGGATTGGAAA
581 GAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGA-AAAATAGGGATTGGGAA
* * * * * *
19318902 GGGAAAGGGGAATATCAAGACTGGGTCTATTGGGAAGTGGGAACAATGGTAAACCTTTTAGGTTA
645 GGGAAAGGGGAATATAAAGACTAGGTCTACTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTA
* * * *
19318967 ATAAAATCGGGCTGGGCATGGGTTGAAAAATCCTTACTCAAAGCCCGACCCATTTTTAAAACGGA
710 ATAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTTAAAACGGA
* * *
19319032 CTGGTAGTGCAATATATACAATAAATCTCTATGAAAATAAATTTTA-TTAAACCAAGAAAAATGA
775 CTGGTAGTGCAATACATACAATAAATCTCTATGAAAA-AAA-TTCACTAAAACCAAGAAAAATGA
* * ** *
19319096 GATCATTTTACATTCTGCGGTAAAGATTATTGGCAGTGA
838 GATCATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* * * *
19319135 AAGTGTGACAAGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGATTTTTTTAGTAACTAT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTTTTTTAGTAACTAC
** * *
19319200 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTCAGAGACAAATGAGCAGCGAC
65 TAACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGAT
** * ** *
19319265 GCTGGAGGTCTCTGAATGTTGTGGGGGTGTTACCTTTGTGAATAAGTGAATGGGTGAGTAGGGGA
130 GCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGA
* * * * * *
19319330 ACTGAGGTTGGTGAAAGTATGTCAGGTGCTAAAACTATTGTATGAATTATCATAATAAGTACTTT
195 ACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTT
* * *
19319395 CTTTTACTAACTACTTACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGGTGAATGTTGGAG
260 -TTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAG
*
19319460 ACAAATGAGCAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGA
324 ACAAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGA
* * * * *
19319525 ATGGTTGAGTGGGGGAATTGTGGTTGTAGAATTTACAGAAGGTAGAGAACCAAAAAGCAGCAACG
389 ATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTACAGAAGGTAGAGAAGCGAAAAGTAGCAGCG
* * * * * *
19319590 ACAATTAAC-AGCTAGTGAAGAAGCAAAAACTTAGCAGAAGGTAAAAGAGCAACAATGGTAGCAA
454 GCAACTAACGA-CTAGCGAAGAAGCAAAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGCAA
* * *
19319654 TGACAACGAAACAAATGAAAACCAGTAAAAGGA-AGAGAAGCAACAATGGTGGCAACACCAAAGA
518 TGACAACGAAAAAAATGAAAACCAATAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGA
* * *
19319718 AGCAGTAAATGAGGAAAAATTTAAGGATTAGGGATTAAGGAATGG-AAAATAGAGATT-GGAAGG
583 AGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAA-GGAAAAATAGGGATTGGGAAGG
* * * ** *
19319781 GAAAAGGGAATATCAACACTAGGTCTGTTGGGAAGTGGGAACAAGGGTAAAA-TTTCTAGGTTAA
647 GAAAGGGGAATATAAAGACTAGGTCTACTGGGAAGTGGGAACAAGGGAAAAACTTT-TAGGTTAA
* * * * * * *
19319845 TAAAATTGAGCTAGGCCTAGGTTGAAAAATCC-CTGCTCGAAGCCCGACCCATTTTTAAAACGGA
711 TAAAATCGGGCTGGGCTTGGGTTGAAAAATCCTC-ACTCGAAGCCCGACCAATTTTTAAAACGGA
* * * **
19319909 TTGGTAGTGCAATATATACAATGAATCTCTATGAAAAAAATTCTA-TAAAATAAAGAAAAATGAG
775 CTGGTAGTGCAATACATACAATAAATCTCTATGAAAAAAATTC-ACTAAAACCAAGAAAAATGAG
* * *
19319973 ATTATTTTATATTCCACAGTAAAGATTATTGGCATTGA
839 ATCATATTATATTCCACAGTAAAGATTATTGGCAGTGA
* *
19320011 AAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
*
19320076 AACTA-TTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAGCGA
66 AACTAGTTGTTATTACAATGTGCGAT--GACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGA
* * *
19320140 TGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGGGTGAATGGGTAAATAGGGG
129 TGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
* * *
19320205 AACTGAGGTTGGTGCAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATGATAATGAGTAGTT
194 AACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTT
* * * *
19320270 TTTCTTAGTAACTACTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGTTGAATGTTGGA
259 TTT-TTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGA
* * * * *
19320335 GACAAATGAGTAGCGATGCTAGAGGTCTCTGATCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTG
323 GACAAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTG
* * * * * * *
19320400 AATGGTTAAGTGGGGAAACTAAGGTTG--G----T-GAG-A-GT-GTG--TC---AAGT------
388 AATGGTTGAGTGGGGGAATTGAGGTTGTAGAATTTACAGAAGGTAGAGAAGCGAAAAGTAGCAGC
* * * * * *
19320444 GGTAAGTAACGACTAGCGAAGAAGCAGAAACTAAGCAGAAGGTAAAAAAGAAACAATAGCGGCAA
453 GGCAACTAACGACTAGCGAAGAAGCAAAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGCAA
* * * * *
19320509 TGACAGCGAAACAAACGAAAAGCAGT-AAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGA
518 TGACAACGAAAAAAATGAAAACCAATAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGA
*
19320573 AGTAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGGGATTGGGAAGGG
583 AGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGGGATTGGGAAGGG
*
19320638 AAAGGGGAATATAAAGACTAGGTCAACTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTAATA
648 AAAGGGGAATATAAAGACTAGGTCTACTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTAATA
* ** ** *
19320703 AATTCGGGCTGGGCTTGGGTTGAAAAATCCTCGTTCGAAGCTTGACCAATTTTTAAAATGGACTG
713 AAATCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTTAAAACGGACTG
* * * * *
19320768 GTAGTACAATACATACAGTAATTCTCTATGAAAAAAATTCACCAAAACCCAGAAAAATGAGATCA
778 GTAGTGCAATACATACAATAAATCTCTATGAAAAAAATTCACTAAAACCAAGAAAAATGAGATCA
19320833 TATTATATTCCACAGTAAAGATTATTGGCAGTGA
843 TATTATATTCCACAGTAAAGATTATTGGCAGTGA
* * * *
19320867 AAGTGTGTTAGGTGGTAAAATTATTGAATGAATTATCATAATAAGTAGTTATTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
* *
19320932 AACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCAACGA
66 AACTAGTTGTTATTACAATGTGCGAT--GACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGA
* * * * * * *
19320997 TGCTGGAGGACTCTGAGTGTGGTGGGGGTGCTGTCTTTGTGCATGAGTGAAAGGTTGAGTGGGGG
129 TGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGG
**
19321062 ATTTGAGGTTG
194 AACTGAGGTTG
19321073 CAGAATTTAT
Statistics
Matches: 2460, Mismatches: 310, Indels: 109
0.85 0.11 0.04
Matches are distributed among these distances:
854 7 0.00
855 157 0.06
856 266 0.11
857 124 0.05
861 3 0.00
864 1 0.00
866 2 0.00
867 2 0.00
868 98 0.04
869 7 0.00
870 35 0.01
871 1 0.00
872 2 0.00
874 23 0.01
875 299 0.12
876 708 0.29
877 499 0.20
878 175 0.07
879 50 0.02
880 1 0.00
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.27
Consensus pattern (876 bp):
AAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAACTACT
AACTAGTTGTTATTACAATGTGCGATGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGATG
CTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAA
CTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTTT
TTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGAC
AAATGAGTAGCAATGCTGGAGGTCTTTGAGCGTGGTGAGGGTGTTGTCTTTGTGAATGAGTGAAT
GGTTGAGTGGGGGAATTGAGGTTGTAGAATTTACAGAAGGTAGAGAAGCGAAAAGTAGCAGCGGC
AACTAACGACTAGCGAAGAAGCAAAAACTAAGCAGAAGGTAAAAAAGCAACAATGGCAGCAATGA
CAACGAAAAAAATGAAAACCAATAAAAAGACAGAGAAGCAACAATGGTGGCAACACCAAAGAAGC
AATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAGGAAAAATAGGGATTGGGAAGGGAAA
GGGGAATATAAAGACTAGGTCTACTGGGAAGTGGGAACAAGGGAAAAACTTTTAGGTTAATAAAA
TCGGGCTGGGCTTGGGTTGAAAAATCCTCACTCGAAGCCCGACCAATTTTTAAAACGGACTGGTA
GTGCAATACATACAATAAATCTCTATGAAAAAAATTCACTAAAACCAAGAAAAATGAGATCATAT
TATATTCCACAGTAAAGATTATTGGCAGTGA
Found at i:19320374 original size:211 final size:208
Alignment explanation
Indices: 19320011--19320448 Score: 671
Period size: 211 Copynumber: 2.1 Consensus size: 208
19320001 TTGGCATTGA
* *
19320011 AAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACT
1 AAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTATTTTAGTAACTACT
* * *
19320076 AACTATTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAGCGAT
66 AACTACTATTATTACAATATGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAGCGAT
* *
19320141 GCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGGGTGAATGGGTAAATAGGGG-
131 GCTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTAAAT-GGGGA
*
19320205 AACTGAGGTTGGTG
195 AACTAAGGTTGGTG
* * *
19320219 CAAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATGATAATGAGTAGTTTTTCTTAGTAACTA
1 -AAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTATT-TTAGTAACTA
* *
19320284 CTAACTAGCTATTATTACAATATGCGATGAGACTGAAGGTTGAATGTTGGAGACAAATGAGTAGC
64 CTAACTA-CTATTATTACAATATGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAGC
* * *
19320349 GATGCTAGAGGTCTCTGATCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGTTAAGTGGG
128 GATGCTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTAAATGGG
19320414 GAAACTAAGGTTGGTG
193 GAAACTAAGGTTGGTG
*
19320430 AGAGTGTGTCAAGTGGTAA
1 A-AGTGTGTCAGGTGGTAA
19320449 GTAACGACTA
Statistics
Matches: 208, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
209 48 0.23
210 22 0.11
211 138 0.66
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.32
Consensus pattern (208 bp):
AAGTGTGTCAGGTGGTAAAATTATTGCATGCATTATCATAATAAGTAGTTATTTTAGTAACTACT
AACTACTATTATTACAATATGCGATGAGACTGAAGGCTGAATGTCGGAGACAAATGAGTAGCGAT
GCTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTAAATGGGGAA
ACTAAGGTTGGTG
Found at i:19321898 original size:210 final size:210
Alignment explanation
Indices: 19321548--19321940 Score: 608
Period size: 210 Copynumber: 1.9 Consensus size: 210
19321538 TGTTAGGTGG
*
19321548 TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTGCTAACTAGTTGTTATTA
1 TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTGTTATTA
* ** * *
19321613 CAATGTGCGATGAGACTGAAGGCTGAATGTTGGGGACAAATGAGTAGTGACGCTGGAGGTCTGTG
66 CAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAACAGCGACGCTGGAGGTCTCTG
* * * * * *
19321678 AGCGTGGTGGGGGTGTTGTCTTTGTTATTGGGTGAATGGTTGTGTAGGGGAACTGTGGTTGGTGT
131 AGCATGGTGGGGGTGTTCTCTTTGTGAATGAGTGAATGGTTGAGTAGGGGAACTGTGGTTGGTGT
19321743 AAGTGTGTCAAGTTC
196 AAGTGTGTCAAGTTC
*
19321758 TAAAATTATTGTATGCATTATCATAATAAGTAGTT-TTTATAGTAACTACTAACTTGTTGTTATT
1 TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTT-TAGTAACTACTAACTAGTTGTTATT
* * *
19321822 ACAATGTGCGCTGAGACTGAAGGCTGATTGTTGGAGACAAATGAACAGCGATGCTGGAGGTCTCT
65 ACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAACAGCGACGCTGGAGGTCTCT
* *
19321887 GAGCATGGTGGGGTTGTTCTCTTTGTGAATGAGTGAATGGTTGAGTGGGGGAAC
130 GAGCATGGTGGGGGTGTTCTCTTTGTGAATGAGTGAATGGTTGAGTAGGGGAAC
19321941 CGAGGTTGCA
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
209 3 0.02
210 161 0.98
ACGTcount: A:0.26, C:0.10, G:0.30, T:0.35
Consensus pattern (210 bp):
TAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTGTTATTA
CAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAACAGCGACGCTGGAGGTCTCTG
AGCATGGTGGGGGTGTTCTCTTTGTGAATGAGTGAATGGTTGAGTAGGGGAACTGTGGTTGGTGT
AAGTGTGTCAAGTTC
Found at i:19322564 original size:876 final size:873
Alignment explanation
Indices: 19320863--19323027 Score: 2989
Period size: 876 Copynumber: 2.5 Consensus size: 873
19320853 ATTATTGGCA
* * * * *
19320863 GTGAAAGTGTGTTAGGTGGTAAAATTATTGAATGAATTATCATAATAAGTAGTTATTTTAGTAAC
1 GTGAAAGTGTGTCAAGTGCTAAAATTATTGTATGCATTATCATAATAAGTAGTT-TTTTAGTAAC
19320928 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
65 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* * * * * * *
19320993 ACGATGCTGGAGGACTCTGAGTGTGGTGGGGGTGCTGTCTTTGTGCATGAGTGAAAGGTTGAGTG
130 GCGATGCTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTG
** * * * * ** *
19321058 GGGGATTTGAGGTTGCAGAATTTATAGGAGGTAGAGAAGCGAAACGTAGCAGCGACAATTAACAA
195 GGGGAACTGAGGTTGCAGAATTTAAAGAAGGTAGAGAAGTGAAA-ATAGCAGCG-GGACTAACAA
* * * * * * *
19321123 CTGGCAAAGAAGCAGAAACTAAGCAAAAGGTAAAAGAGGAACAATGGCGGGAATGACAATGAAAC
258 CTGGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAAC
* * *
19321188 AAACGAAAAGCAGCAAAAGGAAGCAAAGCAACAATGGTGGCAACACTAAAGAAGCAGTAAAGAAG
323 AAACGAAAAGCAGCAAAAGGAAG-AAAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAG
* *
19321253 G-AAAATCTAAGGATTAGGGATTAAGGAAGGGAGAATAGGGATTGGAAAGGGAAAAGGGAATATC
387 GAAAAATTTAAGGATTAGGGATTAAGGAAGGGAAAATAGGGATTGGAAAGGGAAAAGGGAATATC
* * * * *
19321317 AACACTGGGTCTGCTGGGAAGTGGAAACAAGGGTCAATTTTCTAAGCTAATAAAATTGAGCTGGG
452 AACACTGGATCTACTAGGAAGTGGAAACAAGGGTAAACTTTCTAAGCTAATAAAATTGAGCTGGG
* * * *
19321382 CCTAGGTTGAAAAATCTTTGCTTGAAGCTCGGCCCATTTTTAAAACAGGCTAGTAATACAATATA
517 CCTAGGTTGAAAAATCCTAGCTCGAAGCTCGACCCATTTTTAAAACAGGCTAGTAATACAATATA
* * *
19321447 TACAATGAATCTCTATGAAACAAATTCTATAAAACCGAGAAAAATGAGATTATTTTATATTCCAC
582 TACAATGAATCTCTATGAAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATATTCCAC
* * * * *
19321512 AGTAAAGATAATTGGCATTGAAAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAA
647 AGTAAAGATAATTGGCAGTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAA
* *
19321577 GTAGTTATTTTAGTAACTGCTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATG
712 GTAGTTATTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATG
* * * * * * * * *
19321642 TTGGGGACAAATGAGTAGTGACGCTGGAGGTCTGTGAGCGTGGTGGGGGTGTTGTCTTTGTTATT
777 TTGGAGACAAATAAGCAGCGACGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAAT
* * * *
19321707 GGGTGAATGGTTGTGTAGGGGAACT-GTGGTTG
842 GAGTGAATGGTTGAGTAGGGGAACTAAT-CTTG
* *
19321739 GTGTAAGTGTGTCAAGTTCTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTATAGTAAC
1 GTGAAAGTGTGTCAAGTGCTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTT-TAGTAAC
* * * *
19321804 TACTAACTTGTTGTTATTACAATGTGCGCTGAGACTGAAGGCTGATTGTTGGAGACAAATGAACA
65 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* *
19321869 GCGATGCTGGAGGTCTCTGAGCATGGTGGGGTTGTTCTCTTTGTGAATGAGTGAATGGTTGAGTG
130 GCGATGCTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTG
* * *
19321934 GGGGAACCGAGGTTGCAGAATTTAAAGAAGGTAGAGAAGTGATAAATAGCAGCTGGGACGAACGA
195 GGGGAACTGAGGTTGCAGAATTTAAAGAAGGTAGAGAAGTGA-AAATAGCAGC-GGGACTAACAA
* * *
19321999 CTGGCGAAGAAGTAGAAACTAAATAGAAGGTAAAAAAGCAACAATGACGGTAATGACAACGAAA-
258 CTGGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAAC
* *
19322063 AAACGAAAAGCAGCAAAAGGCAGAGAAGCAACAACGGTGGCAACACCAAAGAAGCAATAAATAAG
323 AAACGAAAAGCAGCAAAAGGAAGA-AAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAG
* *
19322128 GAAAAATTTAAGGATTAGGGATTAAGGAAGGGAAAATACGGG-TTGGAAAGGGAAAGGGGTATAT
387 GAAAAATTTAAGGATTAGGGATTAAGGAAGGGAAAATA-GGGATTGGAAAGGGAAAAGGGAATAT
* * * * *
19322192 CAAGACTGGATCTACTAGGAAGTGGGAACAAGGGTAAAACTTT-TAGGTTAATAAAATTG-GTTT
451 CAACACTGGATCTACTAGGAAGTGGAAACAAGGGT-AAACTTTCTAAGCTAATAAAATTGAG-CT
* * * ** * * *
19322255 GGGCTTGGGTTGAAAAATCCTAGCTCGAAGCTTGACCCATTTTT-AAATTGGACTGGTAGTGCAA
514 GGGCCTAGGTTGAAAAATCCTAGCTCGAAGCTCGACCCATTTTTAAAACAGG-CTAGTAATACAA
19322319 TATATACAATGAATCTCTATGAAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATATT
578 TATATACAATGAATCTCTATGAAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATATT
*
19322384 CCACAGTAAAGA-ATATTGGCAGTGAAAGTGCGTCAGGTGGTGAAATTATTGTATACATTATCAA
643 CCACAGTAAAGATA-ATTGGCAGTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAA
*
19322448 AATAAGTAGTTTTTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCT
707 AATAAGTAGTTATTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCT
* *
19322513 GAATGTTGGAGACAAATAAGCAGCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTGTTTG
772 GAATGTTGGAGACAAATAAGCAGCGACGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTG
* *
19322578 TGAATGAGTGATTGGTTGAGTGGGGGAACTAATCTTG
837 TGAATGAGTGAATGGTTGAGTAGGGGAACTAATCTTG
* * * * *
19322615 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATACATTATTATAATAAGTAGTTTTTTTAATAAC
1 GTGAAAGTGTGTCAAGTGCTAAAATTATTGTATGCATTATCATAATAAGTAG-TTTTTTAGTAAC
* * *
19322680 TACTAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATGAGTA
65 TACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* * *
19322745 GCGATGTTGGAGGTCTCTGATCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
130 GCGATGCTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTG
* ** * *
19322810 GGGGAACTGA-GTTCGTAGAATTTGCAGAAGGTAGAGAGGTGAAAAGTAACAGCGGCGACTAACA
195 GGGGAACTGAGGTT-GCAGAATTTAAAGAAGGTAGAGAAGTGAAAA-TAGCAGCGG-GACTAACA
*
19322874 ACTGGCGAAGAAGTAGAAAGTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAA
257 ACTGGCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAA
* * *
19322939 CAAATGAAAAGCAGCAAAAGGAAAAAAAGCAACAATGGTGGCAACACCGAAGAAGCAATAAATAA
322 CAAACGAAAAGCAGCAAAAGG-AAGAAAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAA
*
19323004 GGAAAATTTTAAGGATTAGGGATT
386 GGAAAAATTTAAGGATTAGGGATT
19323028 GTCGTAACCA
Statistics
Matches: 1133, Mismatches: 139, Indels: 33
0.87 0.11 0.03
Matches are distributed among these distances:
874 1 0.00
875 77 0.07
876 957 0.84
877 96 0.08
878 2 0.00
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.26
Consensus pattern (873 bp):
GTGAAAGTGTGTCAAGTGCTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTAGTAACT
ACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCAG
CGATGCTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTGG
GGGAACTGAGGTTGCAGAATTTAAAGAAGGTAGAGAAGTGAAAATAGCAGCGGGACTAACAACTG
GCGAAGAAGTAGAAACTAAGTAGAAGGTAAAAAAGCAACAATGGCGGGAATGACAACGAAACAAA
CGAAAAGCAGCAAAAGGAAGAAAGCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAA
AATTTAAGGATTAGGGATTAAGGAAGGGAAAATAGGGATTGGAAAGGGAAAAGGGAATATCAACA
CTGGATCTACTAGGAAGTGGAAACAAGGGTAAACTTTCTAAGCTAATAAAATTGAGCTGGGCCTA
GGTTGAAAAATCCTAGCTCGAAGCTCGACCCATTTTTAAAACAGGCTAGTAATACAATATATACA
ATGAATCTCTATGAAAAAAATTCTATAAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTA
AAGATAATTGGCAGTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAG
TTATTTTAGTAACTACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGG
AGACAAATAAGCAGCGACGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGT
GAATGGTTGAGTAGGGGAACTAATCTTG
Found at i:19322774 original size:210 final size:210
Alignment explanation
Indices: 19322405--19322817 Score: 664
Period size: 210 Copynumber: 2.0 Consensus size: 210
19322395 AATATTGGCA
* *
19322405 GTGAAAGTGCGTCAGGTGGTGAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAATAAC
* *
19322470 TACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATAAGCA
66 TACAAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATAAGCA
* * *
19322535 GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTGTTTGTGAATGAGTGATTGGTTGAGTG
131 GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
19322600 GGGGAACTAATCTTG
196 GGGGAACTAATCTTG
* * *
19322615 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATACATTATTATAATAAGTAGTTTTTTTAATAAC
1 GTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAATAAC
* * *
19322680 TACTAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATGAGTA
66 TACAAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATAAGCA
* * * * *
19322745 GCGATGTTGGAGGTCTCTGATCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
131 GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
19322810 GGGGAACT
196 GGGGAACT
19322818 GAGTTCGTAG
Statistics
Matches: 185, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
210 185 1.00
ACGTcount: A:0.29, C:0.09, G:0.30, T:0.33
Consensus pattern (210 bp):
GTGAAAGTGCGTCAGGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAATAAC
TACAAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATATTGGAGACAAATAAGCA
GCGATGCTAGAGGTCTCTGAGCATGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
GGGGAACTAATCTTG
Found at i:19324232 original size:33 final size:38
Alignment explanation
Indices: 19324190--19324271 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
19324180 GTAAAAACAC
19324190 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
19324223 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
19324262 AATAATAATA
1 AATAGTAATA
19324272 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:19324280 original size:19 final size:18
Alignment explanation
Indices: 19324256--19324297 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
19324246 TGGTATTAGT
*
19324256 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
19324275 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
19324293 AATAA
1 AATAA
19324298 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:19324713 original size:13 final size:13
Alignment explanation
Indices: 19324676--19324810 Score: 106
Period size: 13 Copynumber: 11.6 Consensus size: 13
19324666 TTTGTAGGCA
19324676 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
*
19324688 -G-GG-GTGATTT
1 AGTGGAGTGGTTT
19324698 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
19324711 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
19324723 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
19324733 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
19324746 AGTGTAGTGGTTT
1 AGTGGAGTGGTTT
*
19324759 AGTAGAGTGG--T
1 AGTGGAGTGGTTT
*
19324770 --TGGAGAGGTTT
1 AGTGGAGTGGTTT
19324781 AGTGGAGTGG--T
1 AGTGGAGTGGTTT
19324792 --TGGAGTGGTTT
1 AGTGGAGTGGTTT
19324803 AGTGGAGT
1 AGTGGAGT
19324811 AAAGATATTT
Statistics
Matches: 98, Mismatches: 8, Indels: 33
0.71 0.06 0.24
Matches are distributed among these distances:
9 23 0.23
10 6 0.06
11 8 0.08
12 6 0.06
13 53 0.54
14 2 0.02
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:19324729 original size:22 final size:22
Alignment explanation
Indices: 19324700--19324810 Score: 143
Period size: 22 Copynumber: 4.9 Consensus size: 22
19324690 GGTGATTTAG
19324700 TGGAGTGGTTTAGTAGG-GTGGT
1 TGGAGTGGTTTAGT-GGAGTGGT
*
19324722 TGGGGTGGTTTAGTGGAGTGGTT
1 TGGAGTGGTTTAGTGGAGTGG-T
*
19324745 TAGTGTAGTGGTTTAGTAGAGTGGT
1 T-G-G-AGTGGTTTAGTGGAGTGGT
*
19324770 TGGAGAGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
19324792 TGGAGTGGTTTAGTGGAGT
1 TGGAGTGGTTTAGTGGAGT
19324811 AAAGATATTT
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
21 2 0.03
22 52 0.67
23 3 0.04
24 2 0.03
25 3 0.04
26 16 0.21
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.37
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGAGTGGT
Found at i:19324748 original size:48 final size:48
Alignment explanation
Indices: 19324695--19324792 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
19324685 GTTGGGGTGA
* * *
19324695 TTTAGTGGAGTGGTTTAGTAGGGTGGTTGGGGTGGTTTAGTGGAGTGG
1 TTTAGTGGAGTGGTTTAGTAGAGTGGTTGGAGAGGTTTAGTGGAGTGG
*
19324743 TTTAGTGTAGTGGTTTAGTAGAGTGGTTGGAGAGGTTTAGTGGAGTGG
1 TTTAGTGGAGTGGTTTAGTAGAGTGGTTGGAGAGGTTTAGTGGAGTGG
19324791 TT
1 TT
19324793 GGAGTGGTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.39
Consensus pattern (48 bp):
TTTAGTGGAGTGGTTTAGTAGAGTGGTTGGAGAGGTTTAGTGGAGTGG
Found at i:19324756 original size:35 final size:35
Alignment explanation
Indices: 19324676--19324810 Score: 148
Period size: 35 Copynumber: 3.9 Consensus size: 35
19324666 TTTGTAGGCA
* *
19324676 AGTGGAGTGGTTGGGGTGATTTAGTGGAGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTTAGTGGAGTGGTTT
*
19324711 AGTAGG-GTGGTTGGGGTGGTTTAGTGGAGTGGTTT
1 AGT-GGAGTGGTTGGAGTGGTTTAGTGGAGTGGTTT
* * * ** * *
19324746 AGTGTAGTGGTT-TAGTAGAGTGGTTGGAGAGGTTT
1 AGTGGAGTGGTTGGAGTGGTTTAG-TGGAGTGGTTT
19324781 AGTGGAGTGGTTGGAGTGGTTTAGTGGAGT
1 AGTGGAGTGGTTGGAGTGGTTTAGTGGAGT
19324811 AAAGATATTT
Statistics
Matches: 80, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
34 6 0.08
35 66 0.82
36 8 0.10
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (35 bp):
AGTGGAGTGGTTGGAGTGGTTTAGTGGAGTGGTTT
Found at i:19325139 original size:44 final size:44
Alignment explanation
Indices: 19325067--19325832 Score: 650
Period size: 44 Copynumber: 17.4 Consensus size: 44
19325057 TGAGTTCTTG
* * *
19325067 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * * *
19325110 ATCTGCTGTCTTCAA-CTTGTTTCCTATAAACATAGGGATGCCGA
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
*
19325154 ATCTGCTATCTTCAA-CTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
** ** * * *
19325196 ATGCTGAAATCTTCAATCTGCTTCACC-GGAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTC-CCTATAAGCACAGGGATGCCAA
* *
19325242 ATATGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
19325286 ATCTGCTGTTTTTAA-CTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
*** * * * * * *
19325328 ATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
19325374 ATCTACTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
19325418 ATCTGCTATCTTCAA-CGTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
19325460 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG-TAA
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
* *
19325505 GATCTGCTATCTTCGATCTGTTCCTTATAAGCACAGGGATGCCAA
1 -ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
19325550 ATCTGCTGTTTTCAA-CTTGTTCCCTATAAGCACAGGGATGCCAT
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * * * *
19325594 GT-TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
19325638 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
19325682 ATCTGCTGTTTTCAA-CTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * *
19325724 ATGCTGAAATCTTCAATCTGTTTCACTATAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
19325770 ATCTACTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
19325814 ATCTACAATCTTCAATCTG
1 ATCTGCTATCTTCAATCTG
19325833 CTCTCCGCCG
Statistics
Matches: 578, Mismatches: 112, Indels: 65
0.77 0.15 0.09
Matches are distributed among these distances:
42 8 0.01
43 67 0.12
44 422 0.73
45 73 0.13
46 8 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:19325338 original size:132 final size:132
Alignment explanation
Indices: 19325074--19325817 Score: 1141
Period size: 132 Copynumber: 5.6 Consensus size: 132
19325064 TTGATCTGCT
* ** * * * * * * *
19325074 TCTTCGATCTG-TTCCCCATAAACACAGGGATGCCAAATCTGCTGTCTTC-AACTTGTTTCCTAT
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-TGTTCCCTAT
* * * * * *
19325137 AAACATAGGGATGCCGAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATTCCATGCTG
65 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
19325202 AAA
130 AAA
* * * *
19325205 TCTTCAATCTGCTTCACCGGAAGCACAGGAATGTCAGATATGCTATCTTCGATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
* * *
19325270 AGCACAGGGATGCCAAATCTGCTGTTTTTAACTTGTTCCCTATAAACACAGGGATGCCATGCTAA
66 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
19325335 AA
131 AA
* *
19325337 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCAATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
* * *
19325402 AGCACAGGGATGCCAAATCTGCTATCTTCAACGTGTTCCCTATAAGCACAGGGATGCCATGCTGA
66 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
19325467 AA
131 AA
* *
19325469 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTAAGATCTGCTATCTTCGATCTGTTCCTTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
*
19325534 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGTTGA
66 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
19325599 AA
131 AA
19325601 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
19325666 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
66 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
19325731 AA
131 AA
* * * *
19325733 TCTTCAATCTGTTTCACTATAAGCACAGGAATGTCAGATCTACTATCTTCGATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
*
19325798 AACACAGGGATGCCAAATCT
66 AGCACAGGGATGCCAAATCT
19325818 ACAATCTTCA
Statistics
Matches: 562, Mismatches: 49, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
131 10 0.02
132 550 0.98
133 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGA
AA
Found at i:19326376 original size:205 final size:205
Alignment explanation
Indices: 19325844--19326332 Score: 789
Period size: 205 Copynumber: 2.4 Consensus size: 205
19325834 TCTCCGCCGC
* * **
19325844 TACAGAGACGCCAAATTATCTTTTATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGAAGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
** * * *
19325909 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGGAAAACCATCTTAGATCTGCTTCAGTATAAACA
66 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGCATAAACA
*
19325974 TTTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
131 TCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
19326039 TCTCTGACAA
196 TCTCTGACAA
* * * *
19326049 TACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACATGAAAGCCAAATCAGCTATG
1 TACAGAGAAGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
19326114 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGCATAAACA
66 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGCATAAACA
* * * * *
19326179 TCTGAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTCGATTTGT
131 TCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
19326244 TCTCTGACAA
196 TCTCTGACAA
*
19326254 TACAGAGAAGCCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGAAGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
19326319 TCTTCGATCTGCTC
66 TCTTCGATTTGCTC
19326333 TCCGCCTGAT
Statistics
Matches: 260, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
205 260 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (205 bp):
TACAGAGAAGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGCATAAACA
TCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
TCTCTGACAA
Found at i:19326594 original size:61 final size:64
Alignment explanation
Indices: 19326477--19326601 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 64
19326467 TCATGTATTC
19326477 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
19326541 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
19326602 TTATTGTAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.34
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:19331012 original size:19 final size:20
Alignment explanation
Indices: 19330988--19331034 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
19330978 AGTGAAAGTT
*
19330988 TAATGCAAATGT-TGTAATG
1 TAATGCAAATGTATGGAATG
19331007 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGGAATG
19331027 -AATGCAAA
1 TAATGCAAA
19331035 AGAAAGGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.06, G:0.21, T:0.30
Consensus pattern (20 bp):
TAATGCAAATGTATGGAATG
Found at i:19334230 original size:13 final size:13
Alignment explanation
Indices: 19334197--19334340 Score: 125
Period size: 13 Copynumber: 11.6 Consensus size: 13
19334187 TTTGTAGGCA
19334197 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
19334209 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
19334219 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
19334232 AGTAGG-GTGG-TT
1 AGT-GGAGTGGTTT
19334244 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
19334254 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
* *
19334267 AGTGTAGTGGCTT
1 AGTGGAGTGGTTT
19334280 AGTGGAGTGGTTAGAGT
1 AGTGGAGTGGTT----T
19334297 AGTTGGAGTGGTTT
1 AG-TGGAGTGGTTT
19334311 AGTGGAGTGG--T
1 AGTGGAGTGGTTT
19334322 --TGGAGTGGTTT
1 AGTGGAGTGGTTT
19334333 AGTGGAGT
1 AGTGGAGT
19334341 AAAGATATTT
Statistics
Matches: 110, Mismatches: 4, Indels: 35
0.74 0.03 0.23
Matches are distributed among these distances:
9 18 0.16
10 6 0.05
11 6 0.05
12 6 0.05
13 56 0.51
14 5 0.05
17 3 0.03
18 10 0.09
ACGTcount: A:0.15, C:0.01, G:0.49, T:0.36
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:19334240 original size:26 final size:26
Alignment explanation
Indices: 19334197--19334340 Score: 125
Period size: 22 Copynumber: 5.8 Consensus size: 26
19334187 TTTGTAGGCA
19334197 AGTGGAGTGG-TT-G-GG-GTGGTTT
1 AGTGGAGTGGTTTAGTGGAGTGGTTT
19334219 AGTGGAGTGGTTTAGTAGG-GTGG-TT
1 AGTGGAGTGGTTTAGT-GGAGTGGTTT
19334244 -G-GG-GTGGTTTAGTGGAGTGGTTT
1 AGTGGAGTGGTTTAGTGGAGTGGTTT
* *
19334267 AGTGTAGTGGCTTAGTGGAGTGGTTAGAGT
1 AGTGGAGTGGTTTAGTGGAGTGGTT----T
19334297 AGTTGGAGTGGTTTAGTGGAGTGG--T
1 AG-TGGAGTGGTTTAGTGGAGTGGTTT
19334322 --TGGAGTGGTTTAGTGGAGT
1 AGTGGAGTGGTTTAGTGGAGT
19334341 AAAGATATTT
Statistics
Matches: 104, Mismatches: 4, Indels: 28
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.02
22 43 0.41
23 6 0.06
24 3 0.03
25 4 0.04
26 24 0.23
30 3 0.03
31 19 0.18
ACGTcount: A:0.15, C:0.01, G:0.49, T:0.36
Consensus pattern (26 bp):
AGTGGAGTGGTTTAGTGGAGTGGTTT
Found at i:19334249 original size:35 final size:34
Alignment explanation
Indices: 19334197--19334340 Score: 153
Period size: 35 Copynumber: 3.9 Consensus size: 34
19334187 TTTGTAGGCA
19334197 AGTGGAGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
1 AGTGG-GTGGTTGGGGTGGTTTAGTGGAGTGGTTT
19334232 AGTAGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
1 AGT-GGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
*
19334267 AGTGTAGTGGCTTAGTGGAGTGGTTAGAGTAGTTGGAGTGGTTT
1 AGTG-GGTGG-TT-G-GG-GTGGTT----TAG-TGGAGTGGTTT
*
19334311 AGTGGAGTGGTTGGAGTGGTTTAGTGGAGT
1 AGTGG-GTGGTTGGGGTGGTTTAGTGGAGT
19334341 AAAGATATTT
Statistics
Matches: 94, Mismatches: 3, Indels: 24
0.78 0.02 0.20
Matches are distributed among these distances:
34 1 0.01
35 45 0.48
36 7 0.07
37 1 0.01
38 2 0.02
39 6 0.06
40 6 0.06
41 1 0.01
42 1 0.01
43 5 0.05
44 19 0.20
ACGTcount: A:0.15, C:0.01, G:0.49, T:0.36
Consensus pattern (34 bp):
AGTGGGTGGTTGGGGTGGTTTAGTGGAGTGGTTT
Found at i:19334428 original size:12 final size:12
Alignment explanation
Indices: 19334411--19334436 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
19334401 GTAGGTGCAT
19334411 TTAGGTTTGGGC
1 TTAGGTTTGGGC
19334423 TTAGGTTTGGGC
1 TTAGGTTTGGGC
19334435 TT
1 TT
19334437 TGGAGGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.38, T:0.46
Consensus pattern (12 bp):
TTAGGTTTGGGC
Found at i:19335164 original size:212 final size:208
Alignment explanation
Indices: 19334777--19335171 Score: 601
Period size: 212 Copynumber: 1.9 Consensus size: 208
19334767 ATTGGCAGTA
** *
19334777 AAAGTGTGTCAAGTGGTAAAATTATTTTATGCATTATCATAGTAAGTAGTTTTTATAGTAACTAT
1 AAAGTGTGTCAAGTGGTAAAATTATTGCATGCATTATCATAGTAAGTAGTTTTTATAGTAACTAC
* * *
19334842 TAACTAGTTGTTATTACAATGTGTGATGACTGAAGGCTAAATGTTGGAGACAAATGAGTAGCGAC
66 TAACTAGTCGTTATTACAATGTGCGATGACTGAAGGCTAAATGTTGGAGACAAATGAGCAGCGAC
* *
19334907 GCTGGAGGTCTCTGAGCATGGTGGGGGTGATGTCTTTGTGAATGAGTGAATGGATAAGTAGGGGA
131 ACTGGAGGTCTCTGAGCATGGTAGGGGTGATGTCTTTGTGAATGAGTGAATGGATAAGTAGGGGA
19334972 ACTGAGGCTGGTG
196 ACTGAGGCTGGTG
* * *
19334985 AAAGTGTGTCAGGTGGTAAAATTATTGCATGTATTATCATAGTAAGTAGTTTCTTTTTAGTAACT
1 AAAGTGTGTCAAGTGGTAAAATTATTGCATGCATTATCATAGTAAGTAG-TT-TTTATAGTAACT
* * *
19335050 ACTAACTAGTCGTTATTACAATGTGCGATGAAATTGAATGCTGAATGTTGGAGACAAATGAGCAG
64 ACTAACTAGTCGTTATTACAATGTGCGATG--ACTGAAGGCTAAATGTTGGAGACAAATGAGCAG
* * *
19335115 CGACACTGGAGGTCTTTGAGCGTGGTAGGGGTGCTGTCTTTGTGAATGAGTGAATGG
127 CGACACTGGAGGTCTCTGAGCATGGTAGGGGTGATGTCTTTGTGAATGAGTGAATGG
19335172 GGGAGTGGGG
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
208 45 0.27
209 2 0.01
210 38 0.23
212 81 0.49
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33
Consensus pattern (208 bp):
AAAGTGTGTCAAGTGGTAAAATTATTGCATGCATTATCATAGTAAGTAGTTTTTATAGTAACTAC
TAACTAGTCGTTATTACAATGTGCGATGACTGAAGGCTAAATGTTGGAGACAAATGAGCAGCGAC
ACTGGAGGTCTCTGAGCATGGTAGGGGTGATGTCTTTGTGAATGAGTGAATGGATAAGTAGGGGA
ACTGAGGCTGGTG
Found at i:19336012 original size:210 final size:208
Alignment explanation
Indices: 19335650--19336052 Score: 637
Period size: 210 Copynumber: 1.9 Consensus size: 208
19335640 ATTATTGGCA
* *
19335650 GTGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCAAAATAAGTAGTTTTATTAGTAAC
1 GTGAAAGTGTGTCAGGTGGGAAAATTATTACATGCATTATCAAAATAAGTAGTTTTATTAGTAAC
* * *
19335715 TACTAGCTAGTTGTTATTACAATGTGCGATGAGACTGAATGCCAAATGTTGGAGACAAATGAGTA
66 TACGAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCCAAATGTTGGAGACAAATGAGTA
* *
19335780 GCAATGCTGGAGGTCTCTGAGCGTGGTGGGCGTGTTGTCTTTTTGAATGAGTGAATGGGTGAGTA
131 GCAAT-CTGGAGGTCTCTGAGCGTGGTGGG-GTGTTGTCTCTGTGAATGAGTGAATGGGTGAGTA
19335845 GGGGAACTAAGGTTG
194 GGGGAACTAAGGTTG
* * *
19335860 GTGAAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTGTCAGGTGGGAAAATTATTACATGCATTATCAAAATAAGTAGTTTTATTAGTAAC
** *
19335925 TACGAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGATACAAATGAGTA
66 TACGAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCCAAATGTTGGAGACAAATGAGTA
*
19335990 GTGACAT-TGGAGGTCTCTGAGCGTGGTGGGGTGTTGTCTCTGTGAATGAGTGAATGGGTGAGT
131 G-CA-ATCTGGAGGTCTCTGAGCGTGGTGGGGTGTTGTCTCTGTGAATGAGTGAATGGGTGAGT
19336053 GAAGGAATTG
Statistics
Matches: 177, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
209 31 0.18
210 143 0.81
211 1 0.01
212 2 0.01
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.32
Consensus pattern (208 bp):
GTGAAAGTGTGTCAGGTGGGAAAATTATTACATGCATTATCAAAATAAGTAGTTTTATTAGTAAC
TACGAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCCAAATGTTGGAGACAAATGAGTA
GCAATCTGGAGGTCTCTGAGCGTGGTGGGGTGTTGTCTCTGTGAATGAGTGAATGGGTGAGTAGG
GGAACTAAGGTTG
Found at i:19336358 original size:875 final size:874
Alignment explanation
Indices: 19334512--19336928 Score: 3403
Period size: 875 Copynumber: 2.8 Consensus size: 874
19334502 TTGGGCCATA
* * * *
19334512 CAGGGATTAAGGAAGGGAAAATAGGGATTGGAGAGGGAAATGGGAATATCAAAACTAGGTCT-GT
1 CAGGGATTAAGGAAGGGAAAATAGGGATTGGA-AGGAAAAGGGGAATATCAAGACTAGGTCTAGC
*
19334576 TGGGAAGCGGGAACAAGGGTAAAACTTTTAGGTTAATAAAATCGAG-TGGGGCTTGGGTTGAAAA
65 TGGGAAGAGGGAACAAGGGTAAAACTTTTAGGTTAATAAAATCG-GCT-GGGCTTGGGTTGAAAA
* * * *
19334640 ATCCTTAC-TT-GAAACCCGACCCATTTGTAAAACGGACTAGTAGTGCAATATATACAATAAATC
128 ATCC-T-CGTTCGAAGCTCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATC
* * * *
19334703 TCTATGAAAAATATTCTATAAAACTAAGAAAAATGACATTAGTTTACATTCCACAGTAAAGATTA
191 TCTATGAAAAA-ATTCTATAAAACCAAGAAAAATGAGA-TAATTTATATTCCACAGTAAAGATTA
* * * *
19334768 TTGGCAGTAAAAGTGTGTCAAGTGGTAAAATTATTTTATGCATTATCATAGTAAGTAGTTTTTAT
254 TTGGCAGTGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCATAATAAGTAGTTTTT-T
* * *
19334833 AGTAACTATTAACTAGTTGTTATTACAATGTGTGAT--GACTGAAGGCTAAATGTTGGAGACAAA
318 AGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCCAAATGTTGGAGACAAA
* * * *
19334896 TGAGTAGCGACGCTGGAGGTCTCTGAGCATGGTGGGGGTGATGTCTTTGTGAATGAGTGAATGGA
383 TGAGTAGCGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGAATGGG
* *
19334961 TAAGTAGGGGAACTGAGGCTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGTATTATCATA
448 TGAGTAGGGGAACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGTATTATCATA
* * * * *
19335026 GTAAGTAGTTTCTTTTTAGTAACTACTAACTAGTCGTTATTACAATGTGCGATGAAATTGAATGC
513 ATAAGTAGTTT-TTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGC
* * *
19335091 TGAATGTTGGAGACAAATGAGCAGCGACACTGGAGGTCTTTGAGCGTGGTAGGGGTGCTGTCTTT
577 TGAATGTTGGAGACAAATGAGTAGCGACACTGGAGGTCTCTGAGCGTGGTAGGGGTGTTGTCTTT
* ** *
19335156 GTGAATGAGTGAATGGGGGAGTGGGGGAATTGAGGTTGTAGAATTTGCAGAAGGTAGAGAAGCGA
642 GTGAATGAGTGAATGGGTGAGTGAAGGAATTGAGGTTGCAGAATTTGCAGAAGGTAGAGAAGCGA
* *
19335221 AAAGTAGCAGCAGCATCTAACGACTAGCGAATAAGCAAAAACTATGCAGAAGGTAAAAAAGAAAC
707 AAAGTAGCAGCAGCAACTAACGACTAGCGAAGAAGCAAAAACTATGCAGAAGGTAAAAAAGAAAC
* * * ** * *
19335286 AATGGCTGCAATGACAACGAAACAAACGAAAAGTAGCAAAAGACAGAGAAGAAATAATGGTGGCA
772 AATGACGGCAATAACAACGAAACAAACGAAAACCAGAAAAAGACAGAGAAGAAACAATGGTGGCA
* *
19335351 ACACCAAAGAAGTAATAAATAGGGAAAAAATTAAGGAT
837 ACACCAAAGAAGCAATAAATAAGGAAAAAATTAAGGAT
* * * * *
19335389 CAGGGATTGAGGAAGGAAAAATAGGGATTGGGAA-GAGAAAGGAGAATATAAAGGCTAGGTC-AG
1 CAGGGATTAAGGAAGGGAAAATAGGGATT-GGAAGGA-AAAGGGGAATATCAAGACTAGGTCTAG
* * *
19335452 CTGGGTAGAGGGAACAAGGGAAAAACTTTTAGATTAATAAAATCAGGCTGGGCTTGGGTTGAAAA
64 CTGGGAAGAGGGAACAAGGGTAAAACTTTTAGGTTAATAAAATC-GGCTGGGCTTGGGTTGAAAA
* * * * *
19335517 ATCCTCGTTCGAAGCTTGACCCATTTTTAAAATGGACTGGTAGTGCAATACATACAATAATTCTT
128 ATCCTCGTTCGAAGCTCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTC
19335582 TATGATAAAAATTCTATAAAACCAAGAAAAATGAGATAATTTATATTCCACAGTAAAGATTATTG
193 TATGA-AAAAATTCTATAAAACCAAGAAAAATGAGATAATTTATATTCCACAGTAAAGATTATTG
*
19335647 GCAGTGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCAAAATAAGTAGTTTTATTAGT
257 GCAGTGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCATAATAAGTAGTTTT-TTAGT
* *
19335712 AACTACTAGCTAGTTGTTATTACAATGTGCGATGAGACTGAATGCCAAATGTTGGAGACAAATGA
321 AACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCCAAATGTTGGAGACAAATGA
* * * *
19335777 GTAGCAATGCTGGAGGTCTCTGAGCGTGGTGGGCGTGTTGTCTTTTTGAATGAGTGAATGGGTGA
386 GTAGCGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGAATGGGTGA
* * *
19335842 GTAGGGGAACTAAGGTTGGTGAAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAATA
451 GTAGGGGAACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGTATTATCATAATA
*
19335907 AGTAG-TTTTTTTAGTAACTACGAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAA
516 AGTAGTTTTTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAA
* * * *
19335971 TGTTGGATACAAATGAGTAGTGACATTGGAGGTCTCTGAGCGTGGT-GGGGTGTTGTCTCTGTGA
581 TGTTGGAGACAAATGAGTAGCGACACTGGAGGTCTCTGAGCGTGGTAGGGGTGTTGTCTTTGTGA
*
19336035 ATGAGTGAATGGGTGAGTGAAGGAATTGAGGTTGCAGAATTTGCAGAAGGTGGAGAAGCGAAAAG
646 ATGAGTGAATGGGTGAGTGAAGGAATTGAGGTTGCAGAATTTGCAGAAGGTAGAGAAGCGAAAAG
* * * * *
19336100 TAGCAGCGGCAACTAATGACTAGCGAAGAAGTAGAAACT-TAGCAGAAGGTAAAAAAGCAACAAT
711 TAGCAGCAGCAACTAACGACTAGCGAAGAAGCAAAAACTAT-GCAGAAGGTAAAAAAGAAACAAT
* *
19336164 GACGGCAATAATAACGAAAC-AACTGAAAACCAGTAAAAAGA-ATAGAA-ACAACAATGGTGGCA
775 GACGGCAATAACAACGAAACAAAC-GAAAACCAG-AAAAAGACAGAGAAGA-AACAATGGTGGCA
* *
19336226 ACACCAAAGAAGCAATAAATAAGTAAAAATTTAAGGAT
837 ACACCAAAGAAGCAATAAATAAGGAAAAAATTAAGGAT
* * *
19336264 TAGGGATTAAGGAAGGGAAAATAAGGATTGGAACGGAAAAGGGGAATATCAAGACTGGGTCTAG-
1 CAGGGATTAAGGAAGGGAAAATAGGGATTGGAA-GGAAAAGGGGAATATCAAGACTAGGTCTAGC
* * * *
19336328 TGGGAAGTGGGAACAAGGTTAAACCTTTTAGGTTAATAAAATCGGGCTGGGCCTGGGTTGAAAAA
65 TGGGAAGAGGGAACAAGGGTAAAACTTTTAGGTTAATAAAATC-GGCTGGGCTTGGGTTGAAAAA
* * * *
19336393 TCCTTGCTCGAAGCTCGACCTATTTTTAAAACGGACTGGTAGTGCAATATATAGAATAAATCTCT
129 TCCTCGTTCGAAGCTCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCT
*
19336458 ATGAAAAAA-GCTATAAAACCAAGAAAAATGAGATAATTTTATATTCCACAGTAAAGATTATTGG
194 ATGAAAAAATTCTATAAAACCAAGAAAAATGAGATAA-TTTATATTCCACAGTAAAGATTATTGG
* *
19336522 TAGTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTA
258 CAGTGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCATAATAAGTAGTT-TTTTAGTA
* * *
19336587 ACTACTAACTAGTTGTTATTACAATGTACGATGAGACTGAAGGCTGAAA-GTTAGAGACAAATGA
322 ACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGC-CAAATGTTGGAGACAAATGA
* *
19336651 GTAGTGACACTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGAATGGGTGA
386 GTAGCGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGAATGGGTGA
* * * * * *
19336716 GTAGGGGAAGTGAGGTTGGTGAAAGTATGTCAGGTGGTACAACTATTGTATGTTTTATCATAATA
451 GTAGGGGAACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGTATTATCATAATA
* * *
19336781 AGTAGTTTTTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGTGATTAGACT-ATAGGGTGA
516 AGTAGTTTTTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGA-AGGCTGA
* ** * *
19336845 ATGTTGGAGATAAATGAGTAGCGATGCTGGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTG
580 ATGTTGGAGACAAATGAGTAGCGACACTGGAGGTCTCTGAGCGTGGTAGGGGTGTTGTCTTTGTG
*
19336910 AATGAGTGAATGAGTGAGT
645 AATGAGTGAATGGGTGAGT
19336929 AGGGGAAGTG
Statistics
Matches: 1368, Mismatches: 148, Indels: 49
0.87 0.09 0.03
Matches are distributed among these distances:
873 26 0.02
874 276 0.20
875 465 0.34
876 256 0.19
877 186 0.14
878 159 0.12
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.27
Consensus pattern (874 bp):
CAGGGATTAAGGAAGGGAAAATAGGGATTGGAAGGAAAAGGGGAATATCAAGACTAGGTCTAGCT
GGGAAGAGGGAACAAGGGTAAAACTTTTAGGTTAATAAAATCGGCTGGGCTTGGGTTGAAAAATC
CTCGTTCGAAGCTCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTAT
GAAAAAATTCTATAAAACCAAGAAAAATGAGATAATTTATATTCCACAGTAAAGATTATTGGCAG
TGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCATAATAAGTAGTTTTTTAGTAACTA
CTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCCAAATGTTGGAGACAAATGAGTAGC
GACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGAATGGGTGAGTAGG
GGAACTGAGGTTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGCATGTATTATCATAATAAGTAG
TTTTTTTTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTG
GAGACAAATGAGTAGCGACACTGGAGGTCTCTGAGCGTGGTAGGGGTGTTGTCTTTGTGAATGAG
TGAATGGGTGAGTGAAGGAATTGAGGTTGCAGAATTTGCAGAAGGTAGAGAAGCGAAAAGTAGCA
GCAGCAACTAACGACTAGCGAAGAAGCAAAAACTATGCAGAAGGTAAAAAAGAAACAATGACGGC
AATAACAACGAAACAAACGAAAACCAGAAAAAGACAGAGAAGAAACAATGGTGGCAACACCAAAG
AAGCAATAAATAAGGAAAAAATTAAGGAT
Found at i:19336887 original size:211 final size:211
Alignment explanation
Indices: 19336524--19337155 Score: 998
Period size: 211 Copynumber: 3.0 Consensus size: 211
19336514 ATTATTGGTA
* * * *
19336524 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAG-TTATTTTAGTAA
1 GTGAAAGTATGTCAGGTGGTACAACTATTGTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
** * * * * *
19336588 CTACTAACTAGTTGTTATTACAATGTACGATGAGACTGA-AGGCTGAAAGTTAGAGACAAATGAG
66 CTACTAACTAGTTGTTATTACAATGTGTGATTAGACT-ATAGGGTGAATGTTGGAGATAAATGAG
* ** * *
19336652 TAGTGACACTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTATGAATGAGTGAATGGGTGAG
130 TAGCGATGCTGGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAG
19336717 TAGGGGAAGTGAGGTTG
195 TAGGGGAAGTGAGGTTG
**
19336734 GTGAAAGTATGTCAGGTGGTACAACTATTGTATGTTTTATCATAATAAGTAGTTTTTTTTAGTAA
1 GTGAAAGTATGTCAGGTGGTACAACTATTGTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
19336799 CTACTAACTAGTTGTTATTACAATGTGTGATTAGACTATAGGGTGAATGTTGGAGATAAATGAGT
66 CTACTAACTAGTTGTTATTACAATGTGTGATTAGACTATAGGGTGAATGTTGGAGATAAATGAGT
*
19336864 AGCGATGCTGGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTGAATGAGTGAATGAGTGAGT
131 AGCGATGCTGGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
19336929 AGGGGAAGTGAGGTTG
196 AGGGGAAGTGAGGTTG
19336945 GTGAAAGTATGTCAGGTGGTACAACTATTGTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
1 GTGAAAGTATGTCAGGTGGTACAACTATTGTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
* * * *
19337010 CTACTAACTAGTTGTTATTACAATGTGTAATTAGACTGTAGGGTGAATGTTGGAGATAAATAAGC
66 CTACTAACTAGTTGTTATTACAATGTGTGATTAGACTATAGGGTGAATGTTGGAGATAAATGAGT
* *
19337075 AGCGATGCTAGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTGAATGAGTGAATGGTTGAGT
131 AGCGATGCTGGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
* *
19337140 GGGGGAATTGAGGTTG
196 AGGGGAAGTGAGGTTG
19337156 CAGAATTTAA
Statistics
Matches: 390, Mismatches: 30, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
210 48 0.12
211 342 0.88
ACGTcount: A:0.28, C:0.08, G:0.31, T:0.34
Consensus pattern (211 bp):
GTGAAAGTATGTCAGGTGGTACAACTATTGTATGCATTATCATAATAAGTAGTTTTTTTTAGTAA
CTACTAACTAGTTGTTATTACAATGTGTGATTAGACTATAGGGTGAATGTTGGAGATAAATGAGT
AGCGATGCTGGAGGTCTCTGAGCGTGATGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
AGGGGAAGTGAGGTTG
Found at i:19337988 original size:210 final size:208
Alignment explanation
Indices: 19337614--19338242 Score: 850
Period size: 210 Copynumber: 3.0 Consensus size: 208
19337604 TAATTGGCAT
* * * **
19337614 TGAAAATGTGTTAGGTGGTAAAATTATTGTAGGCATTATTGTAATAAGTAGTTATTTTAGTAACT
1 TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTT-TTTTAGTAACT
* *
19337679 ACTAACTAGTTATTATTACCATGTGCGATGAGACTG-AGTGTTGAATGTTGGAGACAAATGAGTA
65 ACTAACTAGTTATTATTACAATGTGCGATGAGACTGAAG-GCTGAATGTTGGAGACAAATGAGTA
* * *
19337743 GTGACGCTGGAGGTCTTTGAGTGTGGTGGGGGTGTTGTCTTTGTGAATGAATGAATGGGTGAGTA
129 GCGACGCTGGAGGTCTCTGAGTGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT-
19337808 GGGGAACTGAGGTTGG
193 GGGGAACTGAGGTTGG
* * * * *
19337824 TGTAAGTGTGTCAGGTGGTAAAATTATTGAATGCATTATCATATTGAGTAGTTTTGTTAGTAATT
1 TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTT-TTAGTAACT
* * *
19337889 ACTAACTAGCTATTATTACAATATGCGAT-AGGACTGAAGGCTAAATGTTGGAGACAAATGAGTA
65 ACTAACTAGTTATTATTACAATGTGCGATGA-GACTGAAGGCTGAATGTTGGAGACAAATGAGTA
* *
19337953 GCGACGCTAGAGGTCTCTG-GTCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGCTGAGT
129 GCGACGCTGGAGGTCTCTGAGT-GTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
*
19338017 GGGGAAACTAAGGTTGG
193 GGGG-AACTGAGGTTGG
* *
19338034 TGAAAGTGTGTCAAGTTGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTATAGTAACT
1 TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTT-TAGTAACT
* * * ** *
19338099 ACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGATTGTTGGAGACAAATAAACAA
65 ACTAACTAGTTATTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAG
* * * *
19338164 CGATGCTGGAGGTCTCTGAGTATGGTGCGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTGG
130 CGACGCTGGAGGTCTCTGAGTGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT-G
*
19338229 GGGAACTGACGTTG
194 GGGAACTGAGGTTG
19338243 CAGAATTTGT
Statistics
Matches: 365, Mismatches: 45, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
209 10 0.03
210 346 0.95
211 9 0.02
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (208 bp):
TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTAGTAACTA
CTAACTAGTTATTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGC
GACGCTGGAGGTCTCTGAGTGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTGGG
GAACTGAGGTTGG
Found at i:19339068 original size:210 final size:210
Alignment explanation
Indices: 19338701--19339098 Score: 661
Period size: 210 Copynumber: 1.9 Consensus size: 210
19338691 ATTATTGGCA
*
19338701 GTGAAAGTGTATCAAGTGGTAAAATTATTGTATATATTATCAAAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTATCAAGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAGTAAC
* *
19338766 TACAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGTA
66 TAAAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
*
19338831 GCGACGCTAGAGGTCTCTAAGCGTGGTGGGGGTGTTGTGTTTGTGAATGAGTGAATGGTTGAGTG
131 GCGACGCTAGAGGTCTCTAAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTG
19338896 GGGGAACTGATGTTG
196 GGGGAACTGATGTTG
* * * *
19338911 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTATCAAGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAGTAAC
*
19338976 TAAAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCG
66 TAAAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
* * * * * *
19339041 GCGATGCTGGAGGTCTTTGATCGTGGTGGGGGTGTTTTCTTTGTGAATGAGTGAATGG
131 GCGACGCTAGAGGTCTCTAAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGG
19339099 GAGAGTAGAG
Statistics
Matches: 173, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
210 173 1.00
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.33
Consensus pattern (210 bp):
GTGAAAGTGTATCAAGTGGTAAAATTATTGTATACATTATCAAAATAAGTAGTTTTTTTAGTAAC
TAAAAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGCA
GCGACGCTAGAGGTCTCTAAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTG
GGGGAACTGATGTTG
Found at i:19339930 original size:212 final size:208
Alignment explanation
Indices: 19339548--19339948 Score: 550
Period size: 212 Copynumber: 1.9 Consensus size: 208
19339538 ATTGGTAGTA
* ** * *
19339548 AAAGTGTGTCAGGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGTTTTTTAAGTAATTAT
1 AAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAATAAGTAGTTTTTTAAGTAACTAC
* * * *
19339613 TAACTAGTTGTTATTACAATGTGCGATGACTGTAGGCTGAATGTTGGAGACAAATGAGTAGCGAC
66 TAACTAGTCGTTATTACAATGTGCGATGACTGAAAGCTGAATGTTGGAGACAAATGAGCAGCGAC
*
19339678 ACTGGAGGTCTCTAAGCGTGGTGGGGGTGATGTCTTTGTGAATGAGTGAATGGATGAGTAGGGGA
131 ACTGGAGGTCTCTAAGCGTGGTGGGGGTGATATCTTTGTGAATGAGTGAATGGATGAGTAGGGGA
19339743 ACTAAGGCTGGTG
196 ACTAAGGCTGGTG
* * *
19339756 AAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAGTAAGTAGTTTCTTTCTAGTAGCT
1 AAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAATAAGTAGTTT-TTT-AAGTAACT
* *
19339821 ACTAACTAGTCGTTATTACAATGTGCGATGTAACTGAAAGTTGAATGTTGGAGAGAAATGAGCAG
64 ACTAACTAGTCGTTATTACAATGTGCGATG--ACTGAAAGCTGAATGTTGGAGACAAATGAGCAG
** * * ** * * *
19339886 CGACGTTGGAGGTCTTTGAGCGTGGTGGGGGTTCTATTTTTGTGAATTAGTGAATGGGTGAGT
127 CGACACTGGAGGTCTCTAAGCGTGGTGGGGGTGATATCTTTGTGAATGAGTGAATGGATGAGT
19339949 GGGAGAATTG
Statistics
Matches: 165, Mismatches: 24, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
208 48 0.29
209 3 0.02
210 33 0.20
212 81 0.49
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (208 bp):
AAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAATAAGTAGTTTTTTAAGTAACTAC
TAACTAGTCGTTATTACAATGTGCGATGACTGAAAGCTGAATGTTGGAGACAAATGAGCAGCGAC
ACTGGAGGTCTCTAAGCGTGGTGGGGGTGATATCTTTGTGAATGAGTGAATGGATGAGTAGGGGA
ACTAAGGCTGGTG
Found at i:19340789 original size:211 final size:208
Alignment explanation
Indices: 19340422--19340821 Score: 538
Period size: 211 Copynumber: 1.9 Consensus size: 208
19340412 ATTATTCGCA
* *
19340422 GTGAAAGTGTGTCAGGTGGTAAAATTATTATATGCATTATCATAGTAAGTAGTCTTTTAGTAACT
1 GTGAAAGTGTGTCAGGTGGTAAAATTACTATATGCATTATCATAATAAGTAGTCTTTTAGTAACT
** * * *
19340487 ACTAACTACTTGTTATTACAATGTACGATGAGACTGAAGGCTGAATGTTGTAGACAAATGAGTAA
66 AAGAACTAATTGCTATTACAATGTACGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAA
* * ** *
19340552 CGATGCTGGAGGTCTCTCGGCGTGGTGGGGGTGTTGTCTTTGTGAATTAGTAAATGGGTGAGTAG
131 CGAT-CTGGAGGTCTCTAGACGTGGTGGGGGTGTTGTCACTGTGAATGAGTAAATGGGTGAGTAG
19340617 GGGAGCTGAGGTTG
195 GGGAGCTGAGGTTG
* * *
19340631 GTGAAAGTGTGTCAGGTGGTAAATTTACTGTATTCATTATCATAATAAGTAGTCTGTTTTAGTAA
1 GTGAAAGTGTGTCAGGTGGTAAAATTACTATATGCATTATCATAATAAGTAGTC--TTTTAGTAA
*
19340696 CTAAGAACTAATTGCTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGATG-CAAATGAG
64 CTAAGAACTAATTGCTATTACAATGTACGATGAGACTGAAGGCTGAATGTTGGA-GACAAAT--G
* *
19340760 CAGTAAC-AT-TGGAGGTCTC-AGAACGTGGTGGGGTTGTTGTCACTGTGAATGAGTGAATGGGT
126 -AGTAACGATCTGGAGGTCTCTAG-ACGTGGTGGGGGTGTTGTCACTGTGAATGAGTAAATGGGT
19340822 TAGTGGAGGA
Statistics
Matches: 166, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
209 49 0.30
210 1 0.01
211 106 0.64
212 1 0.01
213 3 0.02
214 6 0.04
ACGTcount: A:0.28, C:0.10, G:0.29, T:0.32
Consensus pattern (208 bp):
GTGAAAGTGTGTCAGGTGGTAAAATTACTATATGCATTATCATAATAAGTAGTCTTTTAGTAACT
AAGAACTAATTGCTATTACAATGTACGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAA
CGATCTGGAGGTCTCTAGACGTGGTGGGGGTGTTGTCACTGTGAATGAGTAAATGGGTGAGTAGG
GGAGCTGAGGTTG
Found at i:19341595 original size:875 final size:876
Alignment explanation
Indices: 19339103--19342592 Score: 4542
Period size: 877 Copynumber: 4.0 Consensus size: 876
19339093 GAATGGGAGA
* * ** * *
19339103 GTAGAGAGGTGAAAAGTAGCAGCGGCGTCTAACGACTTGCGAAGTAGTA-AAAACTAAGTAGAAG
1 GTAGAGAAGTGAAAAGTAGCAGCGACCACTAACGACTAGCGAAGAAGTAGAAAA-TAAGTAGAAG
* * * *
19339167 GTAAAAAAGCAACAATGGCGAG-AATGACAATGAAACAAACGAAAAGCAGCGAAAGGAAGAAAAG
65 GTAAAAAAGCAACAATGGCG-GCAATGACAACGAAACAAACGAAAAGCAGCAAAAAGAAGAGAAG
* * * * *
19339231 CAACAACGGTGGCAACTCCAAAGATGCAATAAATAAGGAAAAATTTAAGGATTAGAGATTAAAGA
129 CAACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGA
* * * * *
19339296 AGGGAAAATAGGGATTGGAAAGGGAAAGGGGAATATCAAAACTGGGTCTGCTAGGAAGCGAGAAC
194 AGGGAAAATAGGGATTGGAAAGGGAAAGGGGAATATCAAGACTGGGCCTGCTGGGAAGTGGGAAC
* * * * * * *
19339361 AAGTGTAAAACTTTTAGGTTAATAAAATCGGGTTAGGCTTGGGTTGAAAAATCCTTACTCGATGC
259 AAGGGTAAAACTTTTAGGTTAATAAAATCGAGCTGGGCCTGGGTTGAAAAATCCTTGCTCGAAGC
** *
19339426 CCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTATGAAAATTTTTTT
324 CCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTATGAAAA-AATTCT
* * * * * *
19339491 ATAAAACCAAGAAAAATGGGATCAGTTTACATTCAACAGTAAAGATTATTGGTAGTAAAAGTGTG
388 ATAAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTGGCAGTGAAAGTGTG
* * *
19339556 TCAGGTGGTAAAATTATTTTATGCATTATCATAATAAGTAGTT-TTTTAAGTAATTATTAACTAG
453 TCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTT-AGTAACTACTAACTAG
* * *
19339620 TTGTTATTACAATGTGCGAT--GACTGTAGGCTGAATGTTGGAGACAAATGAGTAGCGACACTGG
517 TTGTTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGACGCTGG
* * * *
19339683 AGGTCTCTAAGCGTGGTGGGGGTGATGTCTTTGTGAATGAGTGAATGGATGAGTAGGGGAACTAA
582 AGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAACTGA
* * *
19339748 GGCTGGTGAAAGTGTGTCAGGTGGGAAAATTATTGCATGCATTATCATAGTAAGTAGTTTCTTTC
647 GGCTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTT-TTT-
* * * * *
19339813 TAGTAGCTACTAACTAGTCGTTATTACAATGTGCGATGTA-ACTGAAAGTTGAATGTTGGAGAGA
710 TAGTAACTACTAACTAGTTGTTATTACAATGTGCGATG-AGACTGAAGGCTGAATGTTGGAGACA
* * *
19339877 AATGAGCAGCGACGTTGGAGGTCTTTGAGCGTGGTGGGGGTTCTAT-T-TTTGTGAATTAGTGAA
774 AATGAGCAGCGACGTTGGAGGTCTCTGAGCGTGGT-GGGGTTGT-TGTCTTTGTGAATGAGTGAA
* *
19339940 TGGGTGAGTGG-GAGAATTGAGGTTGTAGAATTTGTAGAAG
837 TGGGTTAGTGGAG-GAATTGAGGTTGCAGAATTTGTAGAAG
* * * * * * * * *
19339980 GCAGAGAAGCGAAAATTAGCAGTG-GCAGCTAACAACTGGCGAAGAAGCAGAAAATAAGCAGAAG
1 GTAGAGAAGTGAAAAGTAGCAGCGACCA-CTAACGACTAGCGAAGAAGTAGAAAATAAGTAGAAG
* * * * *
19340044 GTAAAAAAGCAACAATGGCTGCAATGACAACGAAACAAACAAAAAGCAGCAAAAGGTAGATAAGC
65 GTAAAAAAGCAACAATGGCGGCAATGACAACGAAACAAACGAAAAGCAGCAAAAAGAAGAGAAGC
** *
19340109 AACGTTGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAAATTTAAGTATTAGGGATTAAGGAA
130 AACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAA
*
19340174 GGGAAAATAGGGATTGGAAACGGAAAAGGGG-ATATCAAGACTGGGCCTGCTGGGAAGTGGGAAC
195 GGGAAAATAGGGATTGGAAA-GGGAAAGGGGAATATCAAGACTGGGCCTGCTGGGAAGTGGGAAC
* * * *
19340238 AAGGGTAAAAATTTTAGGTTAATAAAATCGAGTTGGACTTGGGTTGAAAAATCCTTGCTCGAAGC
259 AAGGGTAAAACTTTTAGGTTAATAAAATCGAGCTGGGCCTGGGTTGAAAAATCCTTGCTCGAAGC
* * *
19340303 CCGACCCATTTTTAAAACGGACTGGTGGTGCAATACATACAATAATTCTCTATGAAAAAATTTCT
324 CCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTATGAAAAAA-TTCT
*
19340368 ATAAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTCGCAGTGAAAGTGTG
388 ATAAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTGGCAGTGAAAGTGTG
* * * *
19340433 TCAGGTGGTAAAATTATTATATGCATTATCATAGTAAGTAG-TCTTTTAGTAACTACTAACTACT
453 TCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGT
* * * *
19340497 TGTTATTACAATGTACGATGAGACTGAAGGCTGAATGTTGTAGACAAATGAGTAACGATGCTGGA
518 TGTTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGACGCTGGA
* * *
19340562 GGTCTCTCG-GCGTGGTGGGGGTGTTGTCTTTGTGAATTAGTAAATGGGTGAGTAGGGGAGCTGA
583 GGTCTCT-GAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAACTGA
* * * * *
19340626 GGTTGGTGAAAGTGTGTCAGGTGGTAAATTTACTGTATTCATTATCATAATAAGTAGTCTGTTTT
647 GGCTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGT-TTTTTT
** * *
19340691 AGTAACTAAGAACTAATTGCTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGATG-CAA
711 AGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGA-GACAA
** * * * **
19340755 ATGAGCAGTAACATTGGAGGTCTCAGAACGTGGTGGGGTTGTTGTCACTGTGAATGAGTGAATGG
775 ATGAGCAGCGACGTTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGG
19340820 GTTAGTGGAGGAATTGAGGTTGCAGAATTTGTAGAAG
840 GTTAGTGGAGGAATTGAGGTTGCAGAATTTGTAGAAG
* * * *
19340857 ATGGAGAAGTGAAAAGTAGCAGCGACCACTAACGACTAGAGAAGAAGTAGAAAATAAGAAGAAGG
1 GTAGAGAAGTGAAAAGTAGCAGCGACCACTAACGACTAGCGAAGAAGTAGAAAATAAGTAGAAGG
* * * * * *
19340922 TAAAAAAGTAACAATGGCGGTAATAACAACG-AA-AAACTGAAAACCAGTAAAAAGAAGAGTAGC
66 TAAAAAAGCAACAATGGCGGCAATGACAACGAAACAAAC-GAAAAGCAGCAAAAAGAAGAGAAGC
* *
19340985 AACAATGGTGGCAACACCAAAAAAGCAATAAATAAGGGAAAATTTAAGGATTAGGGATTAAGGAA
130 AACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAA
* * *
19341050 GGGAAAATAGGGATTGGAAAGGGAAATGGGAATATTAAGACTGGGCCTGCTGGCAAGTGGGAACA
195 GGGAAAATAGGGATTGGAAAGGGAAAGGGGAATATCAAGACTGGGCCTGCTGGGAAGTGGGAACA
* * **
19341115 AGGGTAAACCTTTTAGGTTAATAAAATCGGGCTGGGCCTGGGTTGAAAAATCCTTGCTCGAAGGT
260 AGGGTAAAACTTTTAGGTTAATAAAATCGAGCTGGGCCTGGGTTGAAAAATCCTTGCTCGAAGCC
* * *
19341180 CGACCTATTTTTAAAATGGACTGGTAGTGCAATATATAGAATAAATCTCTATG-AAAAATTCTAT
325 CGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTATGAAAAAATTCTAT
* * * *
19341244 CAAACCTAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTGGGAATGAAAGTGTGTC
390 AAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTGGCAGTGAAAGTGTGTC
*
19341309 AGGTGATAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTG
455 AGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTG
*
19341374 TTATTATAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGACGCTGGAGG
520 TTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGACGCTGGAGG
19341439 TCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAACTGAGGC
585 TCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAACTGAGGC
* * *
19341504 TGGTGAAAGTATGTCAGGTGGTAAAACTATTGTATGCATTATCATTATAAGTAGTTTTTTTAAGT
650 TGGTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTT-AGT
* *
19341569 AACTACTAACTAGTTGTTATTACAATGTGCGATGAGATTGAAGGGTGAATGTTGGAGACAAATGA
714 AACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGA
* * * *
19341634 GTAGCGATGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAAT-GGTTG
779 GCAGCGACGTTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTT-
* *
19341698 AGT-GAGGGAATTGAGGTTGCATAATTTACT-GAAG
843 AGTGGA-GGAATTGAGGTTGCAGAATTT-GTAGAAG
*** * * * *
19341732 GTAGAGAAGTGAAAAGTAGCAGCGACTGTTAAC-AATAGGGGAAGAAACT-GAAACTAAGTAGAA
1 GTAGAGAAGTGAAAAGTAGCAGCGACCACTAACGACTA-GCGAAG-AAGTAGAAAATAAGTAGAA
* * *
19341795 GGTAAAAGAGCAACAATGGTGGCAATGACAACGAAACGAACGAAAAGCAGC-AAAAGTAAGAGAA
64 GGTAAAAAAGCAACAATGGCGGCAATGACAACGAAACAAACGAAAAGCAGCAAAAAG-AAGAGAA
* * * * **
19341859 GAAACAATGGTGGCAACACCAATGAAGCAGTAAATAAGG-AAAATTTCAAGAATT-GAGGATTGT
128 GCAACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAAATTT-AAGGATTAG-GGATTAA
* * * **
19341922 GGAAGGGAGAATAGGGATTGGAAA-GGAAAGGGGAATATCAACACTGGGTCTATTGGGAAGTGGG
191 GGAAGGGAAAATAGGGATTGGAAAGGGAAAGGGGAATATCAAGACTGGGCCTGCTGGGAAGTGGG
* * * *
19341986 AACAAGGGTAAGA-TTTCTAGGTTAATAAAATTGAGCTGGGTC-GAGGTTGAAAAATCCTTGATC
256 AACAAGGGTAAAACTTT-TAGGTTAATAAAATCGAGCTGGGCCTG-GGTTGAAAAATCCTTGCTC
* * * *
19342049 GAAGCCCGAACCATTTTTAAAACAGACTTGTAGTGCAATATATACAATTAATCTCTATGAAAAAA
319 GAAGCCCGACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTATG-AAAAA
* * *
19342114 ATTCTATAAAACCAAGAAAAATGAGATTATTTTATATTCCGCAGTAAAGATTATTGGCATTGAAA
383 ATTCTATAAAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTGGCAGTGAAA
*
19342179 GTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTTATTTTAGT
448 GTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAAT-A--AG------TAGTTATTTTAGT
* * * *
19342244 AACTACTAACTAGTTGTTATTAGAATGTGCGATAAGACTGAAGGCTGAATGCTGGAGAAAAATGA
504 AACTACTAACTAGTTGTTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGA
* *
19342309 GTAGCGATGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGGGTGAATGGGTGA
569 GTAGCGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGA
* * * *
19342374 GTTGGGGAACTGAGGTTGGTGTAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATG
634 GTAGGGGAACTGAGGCTGGTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATA
* * *
19342439 AGTAGTTTTTCTTAGTAACTACTAACTAGCTATTATTACAATGTGCGATAAGACTG-AGCGCTGA
699 AGTAGTTTTT-TTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAG-GCTGA
* * * * * *
19342503 ATGTTGGAGACAAATAAGTAGCGACGCTAGAGGTCTCTGATCGTGGTAGGGG-TGTTATCTTTGT
762 ATGTTGGAGACAAATGAGCAGCGACGTTGGAGGTCTCTGAGCGTGGT-GGGGTTGTTGTCTTTGT
*
19342567 GAATGAGTTAAT-GGTTGAGTGG-GGAA
826 GAATGAGTGAATGGGTT-AGTGGAGGAA
19342593 ACTATGGTCA
Statistics
Matches: 2292, Mismatches: 272, Indels: 90
0.86 0.10 0.03
Matches are distributed among these distances:
874 122 0.05
875 564 0.25
876 368 0.16
877 734 0.32
878 167 0.07
879 1 0.00
880 2 0.00
885 6 0.00
886 321 0.14
887 7 0.00
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (876 bp):
GTAGAGAAGTGAAAAGTAGCAGCGACCACTAACGACTAGCGAAGAAGTAGAAAATAAGTAGAAGG
TAAAAAAGCAACAATGGCGGCAATGACAACGAAACAAACGAAAAGCAGCAAAAAGAAGAGAAGCA
ACAATGGTGGCAACACCAAAGAAGCAATAAATAAGGAAAAATTTAAGGATTAGGGATTAAGGAAG
GGAAAATAGGGATTGGAAAGGGAAAGGGGAATATCAAGACTGGGCCTGCTGGGAAGTGGGAACAA
GGGTAAAACTTTTAGGTTAATAAAATCGAGCTGGGCCTGGGTTGAAAAATCCTTGCTCGAAGCCC
GACCCATTTTTAAAACGGACTGGTAGTGCAATATATACAATAAATCTCTATGAAAAAATTCTATA
AAACCAAGAAAAATGAGATCATTTTATATTCCACAGTAAAGATTATTGGCAGTGAAAGTGTGTCA
GGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACTACTAACTAGTTGT
TATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAGCGACGCTGGAGGT
CTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTAGGGGAACTGAGGCT
GGTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTTTTTTAGTAA
CTACTAACTAGTTGTTATTACAATGTGCGATGAGACTGAAGGCTGAATGTTGGAGACAAATGAGC
AGCGACGTTGGAGGTCTCTGAGCGTGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTTAGT
GGAGGAATTGAGGTTGCAGAATTTGTAGAAG
Found at i:19341660 original size:211 final size:210
Alignment explanation
Indices: 19341297--19341713 Score: 692
Period size: 211 Copynumber: 2.0 Consensus size: 210
19341287 TTATTGGGAA
* *
19341297 TGAAAGTGTGTCAGGTGATAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACT
1 TGAAAGTATGTCAGGTGATAAAACTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACT
*
19341362 ACTAACTAGTTGTTATTATAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAG
66 ACTAACTAGTTGTTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAG
19341427 CGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT-A
131 CGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTGA
19341491 GGGGAACTGAGGCTGG
196 -GGGAACTGAGGCTGG
* * *
19341507 TGAAAGTATGTCAGGTGGTAAAACTATTGTATGCATTATCATTATAAGTAGTTTTTTTAAGTAAC
1 TGAAAGTATGTCAGGTGATAAAACTATTGTATGCATTATCATAATAAGTAGTTATTTT-AGTAAC
* * * *
19341572 TACTAACTAGTTGTTATTACAATGTGCGATGAGATTGAAGGGTGAATGTTGGAGACAAATGAGTA
65 TACTAACTAGTTGTTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTA
* *
19341637 GCGATGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGTTGAGTG
130 GCGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTG
*
19341702 AGGGAATTGAGG
195 AGGGAACTGAGG
19341714 TTGCATAATT
Statistics
Matches: 192, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
210 53 0.28
211 138 0.72
212 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.31, T:0.32
Consensus pattern (210 bp):
TGAAAGTATGTCAGGTGATAAAACTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTAACT
ACTAACTAGTTGTTATTACAATGTACGATAAGACTGAAGGCTGAATGTTGGAGACAAATGAGTAG
CGACGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTGA
GGGAACTGAGGCTGG
Found at i:19342557 original size:211 final size:208
Alignment explanation
Indices: 19342174--19342812 Score: 735
Period size: 211 Copynumber: 3.0 Consensus size: 208
19342164 TTATTGGCAT
* *
19342174 TGAAAGTGTGTTAGGTGGTAAAATTATTGTATGCATTATCATAATAAGTAGTTATTTTAGTTATT
1 TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAAT--G-AG------TAGTTTTT
* * *
19342239 TTAGTAACTACTAACTAGTTGTTATTAGAATGTGCGATAAGACTGAAGGCTGAATGCTGGAGAAA
57 TTAGTAACTACTAACTAGTTGTTATTACAATGTGCGATAAGACTG-AGGCTGAATGTTGGAGACA
* *
19342304 AATGAGTAGCGATGCTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGGGTGAATG
121 AATAAGTAGCGATGCTGGAGGTCTCTGAGCGTGGT-GGGGTGTTGTCTTTGTGAATGAGTGAATG
19342369 GGTGAGTTGGGGAACTGAGGTTGG
185 GGTGAGTTGGGGAACTGAGGTTGG
*
19342393 TGTAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATGAGTAGTTTTTCTTAGTAAC
1 TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATGAGTAGTTTTT-TTAGTAAC
* *
19342458 TACTAACTAGCTATTATTACAATGTGCGATAAGACTGAGCGCTGAATGTTGGAGACAAATAAGTA
65 TACTAACTAGTTGTTATTACAATGTGCGATAAGACTGAG-GCTGAATGTTGGAGACAAATAAGTA
* * * * * *
19342523 GCGACGCTAGAGGTCTCTGATCGTGGTAGGGGTGTTATCTTTGTGAATGAGTTAATGGTTGAG-T
129 GCGATGCTGGAGGTCTCTGAGCGTGGT-GGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTT
**
19342587 GGGGAAACT-ATGGTCAG
193 GGGG-AACTGA-GGTTGG
* * * * * * * *
19342604 TGAAAGCGTGTCAAGTGATAAAAGTATTGTATGAATTATCATAATAAGTAGTTTTTATAGTAACA
1 TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATGAGTAGTTTTTTTAGTAACT
* * * * * * *
19342669 ACTAGCTAGTTGTTATTACAATGTGGGATAAGACTGAAGTTCGATTGTTCGAGACAAATGAA-CA
66 ACTAACTAGTTGTTATTACAATGTGCGATAAGACTGAGGCT-GAATGTTGGAGACAAAT-AAGTA
* * * *
19342733 GCGATGCTGGTGGTCTCTGAGCATGGTGGGGTTGTTGTCTTTGTGAATGAGTGAATGGGTGACTG
129 GCGATGCTGGAGGTCTCTGAGCGTGGTGGGG-TGTTGTCTTTGTGAATGAGTGAATGGGTGAGTT
* *
19342798 GGGGAATTGTGGTTG
193 GGGGAACTGAGGTTG
19342813 TAGAATTTGC
Statistics
Matches: 360, Mismatches: 51, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
209 6 0.02
210 126 0.35
211 182 0.51
216 2 0.01
217 1 0.00
219 43 0.12
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (208 bp):
TGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCATAATGAGTAGTTTTTTTAGTAACT
ACTAACTAGTTGTTATTACAATGTGCGATAAGACTGAGGCTGAATGTTGGAGACAAATAAGTAGC
GATGCTGGAGGTCTCTGAGCGTGGTGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTTGGG
GAACTGAGGTTGG
Found at i:19343678 original size:210 final size:210
Alignment explanation
Indices: 19343267--19343674 Score: 649
Period size: 210 Copynumber: 1.9 Consensus size: 210
19343257 AGAATTGGTA
19343267 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAAC
* * ** * * *
19343332 TACTAATTAGTTGTTATTACAATGTGCGATGGGACTGAAGGCTAAATGTTGGAGACAAATGAGTA
66 TACTAAGTAGTTGTTATTACAATGTACGATGAAACTAAAGGCCAAATGTTGGAGAAAAATGAGTA
* *
19343397 GCGAGACTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTGTTTGTGAATGAGTGAATGGTTGAGTA
131 GCGAGACTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTA
19343462 GGGGAACAGAGGTTG
196 GGGGAACAGAGGTTG
** * *
19343477 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATTTATTATCATAGTAAGTAGTTTTTTTAGTAAC
1 GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAAC
*
19343542 TACTAAGTAGTTGTTATTACAATGTACGATGAAACTAAAGGCCGAATGTTGGAGAAAAATGAGTA
66 TACTAAGTAGTTGTTATTACAATGTACGATGAAACTAAAGGCCAAATGTTGGAGAAAAATGAGTA
* *
19343607 GCGATG-CTGGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATTAGTGAATGGGTGAG-
131 GCGA-GACTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGT
19343670 AGGGG
195 AGGGG
19343675 GAACTGAGTT
Statistics
Matches: 181, Mismatches: 16, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
209 5 0.03
210 175 0.97
211 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.31, T:0.33
Consensus pattern (210 bp):
GTGAAAGTGTGTCAGGTGGTAAAATTATTGTATGCATTATCAAAATAAGTAGTTTTTTTAGTAAC
TACTAAGTAGTTGTTATTACAATGTACGATGAAACTAAAGGCCAAATGTTGGAGAAAAATGAGTA
GCGAGACTAGAGGTCTCTGAGCGTGGTGGGGGTGTTGTCTTTGTGAATGAGTGAATGGGTGAGTA
GGGGAACAGAGGTTG
Found at i:19344353 original size:13 final size:13
Alignment explanation
Indices: 19344335--19344362 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
19344325 TGAATAGGTG
19344335 AGTAGGGGAACTT
1 AGTAGGGGAACTT
19344348 AGTAGGGGAACTT
1 AGTAGGGGAACTT
19344361 AG
1 AG
19344363 GTTTTCGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.07, G:0.39, T:0.21
Consensus pattern (13 bp):
AGTAGGGGAACTT
Done.