Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 69 of 253
Found at i:20107835 original size:22 final size:22
Alignment explanation
Indices: 20107809--20107880 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
20107799 GTTCATATTC
20107809 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
20107831 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
20107855 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
20107878 ATC
1 ATC
20107881 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:20107837 original size:47 final size:47
Alignment explanation
Indices: 20107713--20107909 Score: 225
Period size: 47 Copynumber: 4.1 Consensus size: 47
20107703 TATATATATT
* * *
20107713 TCACATTGACCATTCGGCTTTACCACATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATAT-TC--ACAT-TCA
* * * * *
20107763 TCACATTAGCCATTCCGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* *
20107810 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* * * *
20107857 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
20107904 TCACAT
1 TCACAT
20107910 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
46 1 0.01
47 94 0.72
49 2 0.02
50 34 0.26
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
Found at i:20111036 original size:40 final size:40
Alignment explanation
Indices: 20111004--20111275 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
20110994 CCAGCATGAT
* * * * *
20111004 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
20111044 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
20111084 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
**
20111124 TGCTCTTCGGGACTTAGTCCGGATACATTGCTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
20111164 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
20111204 TGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
20111244 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
20111276 CTCAATTCTC
Statistics
Matches: 215, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:20112587 original size:37 final size:37
Alignment explanation
Indices: 20112541--20112649 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
20112531 TAGCTCAGAC
* *
20112541 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
20112578 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
20112615 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
20112650 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:20112936 original size:50 final size:50
Alignment explanation
Indices: 20112795--20112938 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 50
20112785 GCACATCGCC
* *
20112795 TACATATTTCACACTAGCCATTCGGCTTTACCACA-TATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATTATGCATATCTCA-A
*
20112845 TATATATTTCACATT-GACCATTCGGCTTTACCACATATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACAT-TATGCATATCTCAA
* *
20112895 TACATATTTCACATTAGTCATTCAGCTTTACCACATCTATGCAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACAT-TATGCAT
20112939 GTTCATATTC
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
49 1 0.01
50 70 0.84
51 1 0.01
52 11 0.13
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (50 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATTATGCATATCTCAA
Found at i:20112975 original size:22 final size:22
Alignment explanation
Indices: 20112949--20113020 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
20112939 GTTCATATTC
20112949 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
20112971 ATCACATATATG-CATGTTC-TCATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
20112995 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
20113018 ATC
1 ATC
20113021 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:20112977 original size:47 final size:48
Alignment explanation
Indices: 20112853--20113049 Score: 204
Period size: 47 Copynumber: 4.1 Consensus size: 48
20112843 TATATATATT
* * *
20112853 TCACATTGACCATTCGGCTTTACCACATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATAT-TCAT-CAT-TCA
* * * * * *
20112903 TCACATTAGTCATTCAGCTTTACCACATCTATGCATGTTCAT-ATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCATCATTCA
* *
20112950 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTC-TCATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCATCATTCA
* * * *
20112997 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCA-CATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCATCATTCA
20113044 TCACAT
1 TCACAT
20113050 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
46 2 0.02
47 89 0.70
49 4 0.03
50 32 0.25
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.36
Consensus pattern (48 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCATCATTCA
Found at i:20112985 original size:97 final size:99
Alignment explanation
Indices: 20112795--20112985 Score: 246
Period size: 97 Copynumber: 1.9 Consensus size: 99
20112785 GCACATCGCC
* *
20112795 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATACA-TTCACATT
*
20112860 GACCATTCGGCTTTACCACATATATGCATATCTCA
65 GACCATTCGGCCTTACCACATATATGCATATCTCA
* * * *
20112895 TACATATTTCACATTAGTCATTCAGCTTTACCACATCTATGCATGT-TCATAT-T-CA-TCACAT
1 TACATATTTCACACTAGCCATTCAGCTTTACCACA--TATACATATCTCATATATACATTCACAT
* *
20112956 TGGCCATTCGGCCTTATCACATATATGCAT
64 TGACCATTCGGCCTTACCACATATATGCAT
20112986 GTTCTCATTC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
97 33 0.41
99 1 0.01
100 33 0.41
101 6 0.08
102 7 0.09
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (99 bp):
TACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATACATTCACATTG
ACCATTCGGCCTTACCACATATATGCATATCTCA
Found at i:20116556 original size:34 final size:33
Alignment explanation
Indices: 20116518--20116583 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
20116508 AGTAACAGTC
*
20116518 CAATAACAGT-TAGGGCTTTAGCCCAATACAGTAT
1 CAATAACAGTGT--GGCCTTAGCCCAATACAGTAT
* *
20116552 CAATAGCAGTGTGGCCTTAGCCCATTACAGTA
1 CAATAACAGTGTGGCCTTAGCCCAATACAGTA
20116584 ATAGTAACAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 9 0.32
35 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (33 bp):
CAATAACAGTGTGGCCTTAGCCCAATACAGTAT
Found at i:20121390 original size:50 final size:50
Alignment explanation
Indices: 20121315--20121415 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
20121305 TAATTAGCTC
20121315 TATCCATCTTTGTTGTCTAAGATTCAACTCCTTTTGAGTAAGAAGGTATT
1 TATCCATCTTTGTTGTCTAAGATTCAACTCCTTTTGAGTAAGAAGGTATT
20121365 TATCCATCTTTGTTGTCTAAGATTCAACTCCTTTTGAGTAAGAAGGTATT
1 TATCCATCTTTGTTGTCTAAGATTCAACTCCTTTTGAGTAAGAAGGTATT
20121415 T
1 T
20121416 GAGGCTCTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (50 bp):
TATCCATCTTTGTTGTCTAAGATTCAACTCCTTTTGAGTAAGAAGGTATT
Found at i:20124504 original size:22 final size:22
Alignment explanation
Indices: 20124468--20124532 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
20124458 GCAAATACGT
20124468 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* * *
20124490 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
20124512 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
20124533 AATAATTGGC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:20125045 original size:27 final size:27
Alignment explanation
Indices: 20125015--20125127 Score: 88
Period size: 27 Copynumber: 4.1 Consensus size: 27
20125005 GATAAATCTA
20125015 CAAACCAAGGGTATTTCAATAATTTTG
1 CAAACCAAGGGTATTTCAATAATTTTG
* ***
20125042 CAAACCAATGGTATTTTTGTAACTTTTG
1 CAAACCAAGGGTATTTCAATAA-TTTTG
*
20125070 -AAAGTCC-AGGGTATTTCTATAATTTT-
1 CAAA--CCAAGGGTATTTCAATAATTTTG
* * * *
20125096 CTAAATCAAGGGTATATCAGTAATTTTC
1 C-AAACCAAGGGTATTTCAATAATTTTG
20125124 CAAA
1 CAAA
20125128 TTAGGGGTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
26 1 0.01
27 44 0.65
28 21 0.31
29 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (27 bp):
CAAACCAAGGGTATTTCAATAATTTTG
Found at i:20125128 original size:27 final size:27
Alignment explanation
Indices: 20125089--20125175 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
20125079 GGTATTTCTA
* * *
20125089 TAATTTTCTAAATCAAGGGTATATCAG
1 TAATTTTCCAAATTAAGGGTATATCGG
* *
20125116 TAATTTTCCAAATTAGGGGTATATTGG
1 TAATTTTCCAAATTAAGGGTATATCGG
* * *
20125143 TAATTTTACAAATTGAGGGTATTTCGG
1 TAATTTTCCAAATTAAGGGTATATCGG
20125170 TAATTT
1 TAATTT
20125176 AACAAGTCAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
TAATTTTCCAAATTAAGGGTATATCGG
Found at i:20125180 original size:27 final size:26
Alignment explanation
Indices: 20125077--20125180 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 26
20125067 TTGAAAGTCC
** *
20125077 AGGGTATTTCTATAATTTT-CTAAATCA
1 AGGGTATTTCGGTAATTTTAC-AAAT-T
* * *
20125104 AGGGTATATCAGTAATTTTCCAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
20125130 AGGGGTATATT-GGTAATTTTACAAATT
1 A-GGGTAT-TTCGGTAATTTTACAAATT
*
20125157 GAGGGTATTTCGGTAATTTAACAA
1 -AGGGTATTTCGGTAATTTTACAA
20125181 GTCAACAGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.05
27 58 0.91
28 3 0.05
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATT
Found at i:20125265 original size:18 final size:19
Alignment explanation
Indices: 20125238--20125273 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
20125228 TTCACAAATC
20125238 AGGGTAATTTTGCTAATTG
1 AGGGTAATTTTGCTAATTG
*
20125257 AGGGT-ATTTTGGTAATT
1 AGGGTAATTTTGCTAATT
20125274 TTGTAAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (19 bp):
AGGGTAATTTTGCTAATTG
Found at i:20125287 original size:27 final size:27
Alignment explanation
Indices: 20125257--20125326 Score: 106
Period size: 26 Copynumber: 2.6 Consensus size: 27
20125247 TTGCTAATTG
*
20125257 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAACCA
*
20125284 AGGGTA-TTTAGTAATTTTTTAAACCA
1 AGGGTATTTTAGTAATTTTGTAAACCA
*
20125310 AGGGTATTTCAGTAATT
1 AGGGTATTTTAGTAATT
20125327 CTATCCTACA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 24 0.62
27 15 0.38
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTGTAAACCA
Found at i:20125345 original size:27 final size:27
Alignment explanation
Indices: 20125315--20125418 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
20125305 AACCAAGGGT
20125315 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTATCCTACAGGGGC
*
20125342 ATTTCAGTAATTCTATCTTACAGGGGC
1 ATTTCAGTAATTCTATCCTACAGGGGC
* * * * *
20125369 ATTTTAGTAATTCGACCCTACAGAGGT
1 ATTTCAGTAATTCTATCCTACAGGGGC
*
20125396 ATTTCAGTAATACTATCCTACAG
1 ATTTCAGTAATTCTATCCTACAG
20125419 ATATGAGATT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTATCCTACAGGGGC
Found at i:20127450 original size:41 final size:41
Alignment explanation
Indices: 20127393--20127474 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
20127383 GTTAGGCCCA
20127393 AACCTGGCGTGTCACATTGAAGTGTTTTTCAAAAACCATGT
1 AACCTGGCGTGTCACATTGAAGTGTTTTTCAAAAACCATGT
20127434 AACCTGGCGTGTCACATTGAAGTGTTTTTCAAAAACCATGT
1 AACCTGGCGTGTCACATTGAAGTGTTTTTCAAAAACCATGT
20127475 TCTCATTGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (41 bp):
AACCTGGCGTGTCACATTGAAGTGTTTTTCAAAAACCATGT
Found at i:20128674 original size:41 final size:41
Alignment explanation
Indices: 20128617--20128739 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
20128607 TAAAAGCCAC
* * *
20128617 CGGTGGATCCAAGGTCGTCAAGCAACGATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
*
20128658 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCGCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
** * **
20128699 TAGTGGATTCACGGTCACCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
20128740 TTCTTCCTCC
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:20129028 original size:27 final size:27
Alignment explanation
Indices: 20128996--20129229 Score: 163
Period size: 27 Copynumber: 8.7 Consensus size: 27
20128986 TTGGTAAATC
*
20128996 TACAAACCAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* *
20129023 TGCAAA-CTAATGGTATTTCTG-TAATTT
1 TACAAATC-AAGGGTATTTC-GATAATTT
* * * *
20129050 TGCAAGTCAGGGGTATTTTTG-TAAATTT
1 TACAAATCAAGGGTA-TTTCGAT-AATTT
* *
20129078 T-CAAATCAAGGGTATTTTGATATTTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
20129104 TCCAAAT-TAGGGTTATTTTGATAATTT
1 TACAAATCAAGGG-TATTTCGATAATTT
* *
20129131 TACAAATCGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * *
20129158 AACAAGTCGAGGGTGTTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** * *
20129185 TACAGGTCAAGGGTATTTAGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
20129212 CACAAATTAGGGGTATTT
1 TACAAATCAAGGGTATTT
20129230 TGCTAATTAA
Statistics
Matches: 168, Mismatches: 30, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
26 15 0.09
27 138 0.82
28 15 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGATAATTT
Found at i:20129129 original size:81 final size:82
Alignment explanation
Indices: 20128983--20129148 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 82
20128973 TACAAAGGTG
* *
20128983 TTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAACTAATGGTATTTCTGTAAT
1 TTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTCCAAACTAAGGGTATTTCTGTAAT
* *
20129048 TTTGCAAGTC-AGGGGTA
66 TTTACAAATCGA-GGGTA
* * * * * *
20129065 TTTTT-GTAAATTTTCAAATCAAGGGTATTTTGATATTTTTCCAAA-TTAGGGTTATTT-TGATA
1 TTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTCCAAACTAAGGG-TATTTCTG-TA
20129127 ATTTTACAAATCGAGGGTA
64 ATTTTACAAATCGAGGGTA
20129146 TTT
1 TTT
20129149 CGGTAATTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
80 6 0.08
81 59 0.83
82 6 0.08
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (82 bp):
TTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTCCAAACTAAGGGTATTTCTGTAAT
TTTACAAATCGAGGGTA
Found at i:20129237 original size:18 final size:18
Alignment explanation
Indices: 20129216--20129255 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
20129206 TAATTTCACA
*
20129216 AATTAGGGGTATTTTGCT
1 AATTAAGGGTATTTTGCT
*
20129234 AATTAAGGGTATTTTGGT
1 AATTAAGGGTATTTTGCT
20129252 AATT
1 AATT
20129256 TTGTAAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.45
Consensus pattern (18 bp):
AATTAAGGGTATTTTGCT
Found at i:20129285 original size:26 final size:26
Alignment explanation
Indices: 20129238--20129300 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
20129228 TTTGCTAATT
* *
20129238 AAGGGTATTTTGGTAATTTTGTAAATC
1 AAGGGTA-TTTAGTAATTTTGTAAACC
20129265 AAGGGTATTTAGTAATTTTGTAAACC
1 AAGGGTATTTAGTAATTTTGTAAACC
20129291 AAGGGTATTT
1 AAGGGTATTT
20129301 CATAAATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 27 0.79
27 7 0.21
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (26 bp):
AAGGGTATTTAGTAATTTTGTAAACC
Found at i:20129327 original size:27 final size:27
Alignment explanation
Indices: 20129297--20129400 Score: 138
Period size: 27 Copynumber: 3.9 Consensus size: 27
20129287 AACCAAGGGT
20129297 ATTTCA-TAAATTCTACCCTACAGGGGC
1 ATTTCAGT-AATTCTACCCTACAGGGGC
* * *
20129324 ATTTCAATAATTCTATCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
20129351 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
20129378 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
20129401 ATTTGAGATT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 67 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:20132362 original size:22 final size:23
Alignment explanation
Indices: 20132334--20132395 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
20132324 GCAAATATGT
*
20132334 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
20132356 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
20132378 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
20132396 CAGAATAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:20132598 original size:41 final size:41
Alignment explanation
Indices: 20132541--20132661 Score: 154
Period size: 41 Copynumber: 3.0 Consensus size: 41
20132531 AAATCCACCG
* *
20132541 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCA
1 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
*
20132582 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCG
1 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
* * * * *
20132623 GTAGATCCAC-AGTCTTTAAGCAACCATGTGATTCTCAAT
1 GTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTCAAT
20132662 TTCTTCCTCT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 1 0.01
41 70 0.99
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (41 bp):
GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
Found at i:20132960 original size:27 final size:27
Alignment explanation
Indices: 20132930--20133125 Score: 185
Period size: 27 Copynumber: 7.3 Consensus size: 27
20132920 ACAAACTAAA
* *
20132930 GGTATTTCGGTAATTTTGTAAATCAGG
1 GGTATTTCGGTAATTTTATAAATCAAG
* *
20132957 GGTATTTCTGTAATTTTCTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCAAG
* ** * *
20132984 GGTATTTCGATAATTTTCCAAATTAGG
1 GGTATTTCGGTAATTTTATAAATCAAG
*
20133011 GGTATTTTGGTAATTTTATAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCAAG
* * * *
20133038 GGTATTTCGATAATTTAACAAGTCAAG
1 GGTATTTCGGTAATTTTATAAATCAAG
* * * **
20133065 GGTATTTCAGTAATTTAACAGGTCAAG
1 GGTATTTCGGTAATTTTATAAATCAAG
* * * *
20133092 GGTATTTTGGTAATTTCATAATTTAAG
1 GGTATTTCGGTAATTTTATAAATCAAG
20133119 GGTATTT
1 GGTATTT
20133126 TGCTAATCGA
Statistics
Matches: 140, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCAAG
Found at i:20133033 original size:81 final size:81
Alignment explanation
Indices: 20132930--20133125 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 81
20132920 ACAAACTAAA
* * * *
20132930 GGTATTTCGGTAATTTTGTAAATCAGGGGTATTTCTG-TAATTT-TCTAAATCAAGGGTATTTC-
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTC-GATAATTTAAC-AAATCAAGGGTATTTCA
** * *
20132992 GATAATTTTCCAAATTAGG
64 G-TAATTTAACAAATCAAG
*
20133011 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTCGATAATTTAACAAGTCAAGGGTATTTCAGT
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTCGATAATTTAACAAATCAAGGGTATTTCAGT
**
20133076 AATTTAACAGGTCAAG
66 AATTTAACAAATCAAG
* * *
20133092 GGTATTTTGGTAATTTCATAATTTAAGGGTATTT
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTT
20133126 TGCTAATCGA
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.01
81 95 0.97
82 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTATAAATCAAGGGTATTTCGATAATTTAACAAATCAAGGGTATTTCAGT
AATTTAACAAATCAAG
Found at i:20133165 original size:27 final size:26
Alignment explanation
Indices: 20133135--20133203 Score: 86
Period size: 25 Copynumber: 2.6 Consensus size: 26
20133125 TTGCTAATCG
20133135 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTT-GTAATTTTGTAAACCA
* *
20133162 AGGGT-TTTAGTAATTTTTTAAACCA
1 AGGGTATTTTGTAATTTTGTAAACCA
*
20133187 AGAGTATTTCTGTAATT
1 AGGGTATTT-TGTAATT
20133204 CTACCCTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 19 0.53
26 6 0.17
27 11 0.31
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGTAATTTTGTAAACCA
Found at i:20133222 original size:27 final size:27
Alignment explanation
Indices: 20133198--20133262 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
20133188 GAGTATTTCT
20133198 GTAATTCTACCCTATAGGGGCATTTTA
1 GTAATTCTACCCTATAGGGGCATTTTA
*
20133225 GTAATTCTATCCTATAGGGGCATTTTA
1 GTAATTCTACCCTATAGGGGCATTTTA
20133252 GTAATTCTACC
1 GTAATTCTACC
20133263 ATACAGGAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTATAGGGGCATTTTA
Found at i:20133276 original size:27 final size:26
Alignment explanation
Indices: 20133198--20133292 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
20133188 GAGTATTTCT
*
20133198 GTAATTCTACCCTATAGGGGCATTTTA
1 GTAATTCTA-CCTATAGGAGCATTTTA
*
20133225 GTAATTCTATCCTATAGGGGCATTTTA
1 GTAATTCTA-CCTATAGGAGCATTTTA
* * *
20133252 GTAATTCTACCATACAGGAGTATTTCA
1 GTAATTCTACC-TATAGGAGCATTTTA
*
20133279 GTAATACTAGCCTA
1 GTAATTCTA-CCTA
20133293 CAAATATGAG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
26 2 0.03
27 56 0.93
28 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (26 bp):
GTAATTCTACCTATAGGAGCATTTTA
Found at i:20137254 original size:40 final size:40
Alignment explanation
Indices: 20137095--20137254 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
20137085 CCGAATCCAG
* * * *
20137095 TTACTAGCACAAAGCCTGTGGGACTTTAGGCCCGGATAT--A
1 TTACCAGCACTAAGCCTGCGGGA-TTTA-ACCCGGATATACA
* * *
20137135 GTACCAGGACTAAGCCTGCGGGATTTAACCCGGATATACT
1 TTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACA
* *
20137175 TTACCAGCACGAAGCCTGCGGGATCTAACCCGGATATACA
1 TTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACA
*
20137215 TTACCAGCACTAAGCCTGCGGAATTTAACCCGGATATACA
1 TTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACA
20137255 ATATATCGAG
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
38 9 0.09
39 4 0.04
40 90 0.87
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
TTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACA
Found at i:20138847 original size:19 final size:21
Alignment explanation
Indices: 20138795--20138847 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
20138785 GGCCGAATGC
*
20138795 CTTAGTTTCTTTTTCAATCTT
1 CTTACTTTCTTTTTCAATCTT
*
20138816 GCCTTAGTTTCTTTTTCAATCTT
1 --CTTACTTTCTTTTTCAATCTT
20138839 -TT-CTTTCTT
1 CTTACTTTCTT
20138848 AGTTTCAGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 6 0.21
20 2 0.07
23 21 0.72
ACGTcount: A:0.11, C:0.21, G:0.06, T:0.62
Consensus pattern (21 bp):
CTTACTTTCTTTTTCAATCTT
Found at i:20138853 original size:27 final size:23
Alignment explanation
Indices: 20138792--20138838 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
20138782 CATGGCCGAA
20138792 TGCCTTAGTTTCTTTTTCAATCT
1 TGCCTTAGTTTCTTTTTCAATCT
20138815 TGCCTTAGTTTCTTTTTCAATCT
1 TGCCTTAGTTTCTTTTTCAATCT
20138838 T
1 T
20138839 TTCTTTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.13, C:0.21, G:0.09, T:0.57
Consensus pattern (23 bp):
TGCCTTAGTTTCTTTTTCAATCT
Found at i:20146413 original size:47 final size:47
Alignment explanation
Indices: 20146335--20146787 Score: 710
Period size: 47 Copynumber: 9.6 Consensus size: 47
20146325 CCCTTCGGGA
* * * * * *
20146335 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20146381 CTCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20146429 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20146476 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20146523 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20146570 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20146617 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20146666 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20146715 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20146762 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
20146788 CACAATTATC
Statistics
Matches: 381, Mismatches: 22, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 284 0.75
48 2 0.01
49 93 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:20148485 original size:40 final size:40
Alignment explanation
Indices: 20148425--20148520 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
20148415 CTGTCACAAC
* * *
20148425 TTAACCCGGATATACTTTACCAGCA-TGAAGCCTGCGGGAT
1 TTAACCCGGATATACATTACCAGCACT-AAGCCTGCAGAAT
20148465 TTAACCCGGATATACATTACCAGCACTAAGCCTGCAGAAT
1 TTAACCCGGATATACATTACCAGCACTAAGCCTGCAGAAT
**
20148505 TTAACCCAAATATACA
1 TTAACCCGGATATACA
20148521 ATATATCGAG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
40 49 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (40 bp):
TTAACCCGGATATACATTACCAGCACTAAGCCTGCAGAAT
Found at i:20158787 original size:91 final size:91
Alignment explanation
Indices: 20158632--20158799 Score: 293
Period size: 91 Copynumber: 1.8 Consensus size: 91
20158622 CGCCCTAAGT
* *
20158632 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAAC
20158697 GAGTTCGGATGCCTAGTTACATTCAC
66 GAGTTCGGATGCCTAGTTACATTCAC
*
20158723 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAA-TGAACTCGGACTCAACTCAA
20158787 CGAGTTCGGATGC
65 CGAGTTCGGATGC
20158800 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 10 0.14
91 63 0.86
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:20158796 original size:45 final size:44
Alignment explanation
Indices: 20158631--20158796 Score: 199
Period size: 45 Copynumber: 3.7 Consensus size: 44
20158621 CCGCCCTAAG
* * *
20158631 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAA
* * * * *
20158676 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA--CATTGCATCCA-TAA
*
20158722 CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAA
20158766 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
20158797 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
44 5 0.05
45 63 0.62
46 32 0.31
47 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAA
Found at i:20166173 original size:46 final size:45
Alignment explanation
Indices: 20166106--20166278 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
20166096 TAACCCGCCC
* *
20166106 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTT-GCATCCA
* * *
20166152 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--TTGCATCCA
* * **
20166198 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTGCATCCA
20166243 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
20166279 CTCAACCATC
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
44 4 0.04
45 32 0.30
46 66 0.62
47 3 0.03
48 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTGCATCCA
Found at i:20166267 original size:91 final size:92
Alignment explanation
Indices: 20166111--20166279 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
20166101 CGCCCTAAGT
***
20166111 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20166176 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
20166203 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20166267 CGAGTTCGGATGC
66 CGAGTTCGGATGC
20166280 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 44 0.60
92 29 0.40
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:20168623 original size:47 final size:44
Alignment explanation
Indices: 20168511--20168684 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 44
20168501 AACTAGTAAT
* * * *
20168511 CGATGCATGTCCCAGACCTGTCTTACACTAGCTTACATC-TCGAGGCA
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-T-C-TCGT-AATGTA
* * *
20168558 -AATGCATGTCCTAGACATGTCTTAGACTAGCTCTCGTTTCAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG--T-AATGTA
*
20168603 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAATGTA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAATGTA
20168649 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 --CGATGCATGTCCCAGACATGTCTTACACTAGCTC
20168685 ACAATAACCC
Statistics
Matches: 106, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 6 0.06
46 49 0.46
47 27 0.25
48 21 0.20
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTA
Found at i:20170265 original size:24 final size:23
Alignment explanation
Indices: 20170238--20170307 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
20170228 AAACAGGAAA
20170238 CTCATAAGAGTTTTAATCAGGGAG
1 CTCATAAGAGTTTT-ATCAGGGAG
* * *
20170262 CTCAT-AGAGCTTTA-CAGGTAA
1 CTCATAAGAGTTTTATCAGGGAG
20170283 CTC-TGAAGAGTTATTATCAGGGAG
1 CTCAT-AAGAGTT-TTATCAGGGAG
20170307 C
1 C
20170308 ACCAGATAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 1 0.03
21 8 0.22
22 6 0.17
23 10 0.28
24 11 0.31
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (23 bp):
CTCATAAGAGTTTTATCAGGGAG
Found at i:20173835 original size:43 final size:43
Alignment explanation
Indices: 20173787--20173984 Score: 288
Period size: 43 Copynumber: 4.6 Consensus size: 43
20173777 CCGGCATTAC
*
20173787 GCCTGCTAGGCACGAAGGTCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* ** * *
20173830 GCCTGCTAGGCAGGAAGGCCTAAATACACATCACCGGTATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
20173873 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGACACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
20173916 GCCTGTTAGGCACGAAGGCCCGAATACACATCACCAGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
20173959 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
20173985 TAATACCAGC
Statistics
Matches: 136, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 136 1.00
ACGTcount: A:0.32, C:0.31, G:0.24, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:20174028 original size:38 final size:38
Alignment explanation
Indices: 20173977--20174051 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
20173967 GGCACGAAGG
* *
20173977 CCCGAATATAATACCAGCACTAGGCCTGCGAGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGAGATTTAT
*
20174015 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTA
1 CCCGAATATAATACCAGCACGAAGCCTGCGAGATTTA
20174052 AGCCAAATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGAGATTTAT
Found at i:20178282 original size:43 final size:41
Alignment explanation
Indices: 20178221--20178345 Score: 178
Period size: 43 Copynumber: 2.9 Consensus size: 41
20178211 ACATATCAAT
**
20178221 TCACCGGCATTACTCCTGCTAGGCACGAAGGCCAGAATACACA
1 TCACCGGCA-TAAGCCTGCTAGGCACGAAGGCC-GAATACACA
20178264 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCTCGAATACACA
1 TCACCGGCAT-AAGCCTGCTAGGCACGAAGGC-CGAATACACA
20178307 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCA-TAAGCCTGCTAGGCACGAAGG-CCGAATA
20178346 TAATACCAAC
Statistics
Matches: 76, Mismatches: 2, Indels: 8
0.88 0.02 0.09
Matches are distributed among these distances:
42 1 0.01
43 72 0.95
44 3 0.04
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (41 bp):
TCACCGGCATAAGCCTGCTAGGCACGAAGGCCGAATACACA
Found at i:20187657 original size:28 final size:29
Alignment explanation
Indices: 20187613--20187687 Score: 116
Period size: 29 Copynumber: 2.6 Consensus size: 29
20187603 AGGATGACTG
* *
20187613 TAAATGTGTTTTAGGCCTAAT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
*
20187641 TGAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
20187670 TAAATGTGATTTGGGCCT
1 TAAATGTGATTTGGGCCT
20187688 CATGTGTAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 18 0.43
29 24 0.57
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:20194830 original size:12 final size:12
Alignment explanation
Indices: 20194813--20194838 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20194803 AAACATCAAG
20194813 TGCCTTCAGGTT
1 TGCCTTCAGGTT
20194825 TGCCTTCAGGTT
1 TGCCTTCAGGTT
20194837 TG
1 TG
20194839 TTATAGCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.27, T:0.42
Consensus pattern (12 bp):
TGCCTTCAGGTT
Found at i:20200021 original size:71 final size:71
Alignment explanation
Indices: 20199905--20200048 Score: 288
Period size: 71 Copynumber: 2.0 Consensus size: 71
20199895 TTGGGGGTTT
20199905 TAATTAAGAAAGAAATTTTGATTAATTCAATTGAGGGTTAGACGTTATTAGTCTCTAAAGGGATA
1 TAATTAAGAAAGAAATTTTGATTAATTCAATTGAGGGTTAGACGTTATTAGTCTCTAAAGGGATA
20199970 ACAACA
66 ACAACA
20199976 TAATTAAGAAAGAAATTTTGATTAATTCAATTGAGGGTTAGACGTTATTAGTCTCTAAAGGGATA
1 TAATTAAGAAAGAAATTTTGATTAATTCAATTGAGGGTTAGACGTTATTAGTCTCTAAAGGGATA
20200041 ACAACA
66 ACAACA
20200047 TA
1 TA
20200049 GGTTAGGGAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (71 bp):
TAATTAAGAAAGAAATTTTGATTAATTCAATTGAGGGTTAGACGTTATTAGTCTCTAAAGGGATA
ACAACA
Found at i:20200220 original size:13 final size:13
Alignment explanation
Indices: 20200204--20200236 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
20200194 TTTAATTAAA
*
20200204 TTAGTTAATTAGT
1 TTAGATAATTAGT
20200217 TTAGATAATTAGT
1 TTAGATAATTAGT
20200230 TTA-ATAA
1 TTAGATAA
20200237 ACGAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:20210257 original size:47 final size:47
Alignment explanation
Indices: 20210206--20210737 Score: 722
Period size: 47 Copynumber: 11.1 Consensus size: 47
20210196 TTAGGATTTT
*
20210206 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
20210253 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
20210304 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
20210351 TTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
20210398 ATGTGATGAATGTGAACCCATATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
20210449 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** * *
20210496 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
20210547 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
20210594 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
20210641 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
20210688 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
20210735 ATG
1 ATG
20210738 CGAAACGTGT
Statistics
Matches: 435, Mismatches: 38, Indels: 24
0.88 0.08 0.05
Matches are distributed among these distances:
47 302 0.69
48 1 0.00
49 4 0.01
50 1 0.00
51 127 0.29
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:20210317 original size:98 final size:94
Alignment explanation
Indices: 20210206--20210737 Score: 722
Period size: 98 Copynumber: 5.5 Consensus size: 94
20210196 TTAGGATTTT
* *
20210206 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
20210271 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
20210304 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCATTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
20210369 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
**
20210398 ATGTGATGAATGTGAACCCATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
20210463 AACATGTGTATGTGTGATAAGGCTGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * *
20210496 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGTCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
20210561 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
20210594 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
20210659 TGCATATATGAGATAAGGCCGAGTGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
20210688 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
20210738 CGAAACGTGT
Statistics
Matches: 395, Mismatches: 34, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
94 154 0.39
96 2 0.01
97 3 0.01
98 236 0.60
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:20210356 original size:145 final size:144
Alignment explanation
Indices: 20210206--20210737 Score: 770
Period size: 145 Copynumber: 3.7 Consensus size: 144
20210196 TTAGGATTTT
* *
20210206 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
20210271 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
20210336 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
* * *
20210351 TTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
20210416 CATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGAT
66 C-GATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
*
20210481 AAGGCTGAATGGCCA
130 AAGGCCGAATGGCCA
** * *
20210496 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGTCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
***
20210561 AA--C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
62 AACCCGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
*
20210623 GATAAGGTCGAATGGCCA
127 GATAAGGCCGAATGGCCA
* * * *
20210641 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
20210706 TGA-ATATATGTG-G-TAAGGCCGAATGGCTAATG
66 CGATATATATGTGTGATAAGGCCGAATGGCCAATG
20210738 CGAAACGTGT
Statistics
Matches: 350, Mismatches: 29, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
141 57 0.16
142 1 0.00
143 6 0.02
144 2 0.01
145 241 0.69
146 1 0.00
147 1 0.00
149 41 0.12
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (144 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCCA
Found at i:20210574 original size:23 final size:23
Alignment explanation
Indices: 20210547--20210621 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
20210537 CGAATGGTCA
20210547 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
20210570 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
20210594 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
20210617 ATGTG
1 ATGTG
20210622 TGATAAGGTC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:20210800 original size:46 final size:46
Alignment explanation
Indices: 20210711--20210801 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
20210701 GAACATGAAT
* * * *
20210711 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
20210757 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
20210802 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:20210991 original size:37 final size:37
Alignment explanation
Indices: 20210941--20211052 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
20210931 AACTTGGAAA
20210941 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
20210978 TATGTCCGGGTAAGACCCGATGACTACGTGTAGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
20211015 TATGTCCGGGTAAGACCCGATAACTTCATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
20211052 T
1 T
20211053 TCATCTGAGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:20212765 original size:40 final size:40
Alignment explanation
Indices: 20212322--20212753 Score: 666
Period size: 40 Copynumber: 10.8 Consensus size: 40
20212312 GAGAATTGAG
20212322 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
20212362 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
20212402 AGTGATATATCCGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
20212442 AGTGATATATCCGGGCTAAGTCCCGAGGAGTATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
20212482 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
20212522 AGTGATATATCCGGGCTAAATCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
20212562 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
20212602 AGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
20212642 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
20212682 AGTGATATATCCGTGCTAAGTTCCGAAGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
20212722 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
20212754 ATCATGCTGG
Statistics
Matches: 360, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 360 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:20216768 original size:47 final size:47
Alignment explanation
Indices: 20216717--20217203 Score: 650
Period size: 47 Copynumber: 10.1 Consensus size: 47
20216707 TTAGGATTTT
* *
20216717 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
20216764 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
20216815 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
20216862 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
20216909 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
20216960 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
20217007 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
20217060 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
20217107 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
20217154 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
20217201 ATG
1 ATG
20217204 CGAAACGTGT
Statistics
Matches: 394, Mismatches: 32, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
47 260 0.66
48 1 0.00
49 4 0.01
51 86 0.22
52 1 0.00
53 42 0.11
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:20216828 original size:98 final size:94
Alignment explanation
Indices: 20216717--20217203 Score: 652
Period size: 98 Copynumber: 5.0 Consensus size: 94
20216707 TTAGGATTTT
* *
20216717 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
**
20216782 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATACGTATGTGTGATAAGGCCGAATGGCCA
* * *
20216815 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
20216880 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TACGTATGTGTGATAAGGCCGAATGGCCA
**
20216909 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
20216974 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATACGTATGTGTGATAAGGCCGAATGGCCA
** *
20217007 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
20217072 TGAACATACGTATGTGTGATAAGGCCGAATGGCCA
60 TGAACATACGTATGTGTGATAAGGCCGAATGGCCA
* *
20217107 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
20217172 TGA-ATATATGTGGTAAGGCCGAATGGCTA
66 T-ACGTATGTGTGATAAGGCCGAATGGCCA
20217201 ATG
1 ATG
20217204 CGAAACGTGT
Statistics
Matches: 358, Mismatches: 23, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
94 112 0.31
95 1 0.00
96 2 0.01
97 2 0.01
98 148 0.41
99 1 0.00
100 92 0.26
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACGTATGTGTGATAAGGCCGAATGGCCA
Found at i:20216867 original size:145 final size:145
Alignment explanation
Indices: 20216717--20217203 Score: 739
Period size: 145 Copynumber: 3.3 Consensus size: 145
20216707 TTAGGATTTT
* *
20216717 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
20216782 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
20216847 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* * *
20216862 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
20216927 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
20216992 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
** *
20217007 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
** * *
20217072 TGAA--C--ATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
60 TGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
*
20217133 TGAGATAAGGCCGAATGGCCA
125 TGTGATAAGGCCGAATGGCCA
* * * *
20217154 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
20217204 CGAAACGTGT
Statistics
Matches: 318, Mismatches: 18, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
141 27 0.08
145 158 0.50
146 2 0.01
147 88 0.28
149 1 0.00
151 42 0.13
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (145 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:20216964 original size:24 final size:24
Alignment explanation
Indices: 20216936--20217011 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
20216926 CCGTATATAT
20216936 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
20216960 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
20216983 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
20217007 ATGTG
1 ATGTG
20217012 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:20217266 original size:46 final size:46
Alignment explanation
Indices: 20217177--20217267 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
20217167 GAACATGAAT
* * * *
20217177 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
20217223 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
20217268 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:20217280 original size:245 final size:244
Alignment explanation
Indices: 20216728--20217252 Score: 764
Period size: 245 Copynumber: 2.2 Consensus size: 244
20216718 TGTGATGGAT
* * *
20216728 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCG--TATATAT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATATAT
* *
20216791 ATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAA
66 ATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAA
* * * * *
20216856 TGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
131 TGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATG
* * *
20216921 TGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
196 TGAACACGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGA-GAAC
* *
20216971 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATAT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATATAT
20217036 ATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAA
66 ATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAA
20217101 TGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATG
131 TGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATG
* *
20217166 TGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATGCGA-AAC
196 TGAACACGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAAC
* *
20217210 GTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 GTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
20217253 GATATGTACG
Statistics
Matches: 259, Mismatches: 17, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
239 5 0.02
240 20 0.08
241 22 0.08
242 11 0.04
243 64 0.25
244 1 0.00
245 136 0.53
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (244 bp):
GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATATAT
ATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAA
TGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATG
TGAACACGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAAC
Found at i:20217449 original size:37 final size:37
Alignment explanation
Indices: 20217407--20217481 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
20217397 AACTTGGAAA
*
20217407 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCAGGTAAGACCCGATGACTACATGTGGAGAT
*
20217444 TATGTCCAGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCAGGTAAGACCCGATGACTACATGTGGAGAT
20217481 T
1 T
20217482 TCGTCTGAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
TATGTCCAGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:20222462 original size:12 final size:11
Alignment explanation
Indices: 20222433--20222519 Score: 54
Period size: 12 Copynumber: 7.5 Consensus size: 11
20222423 TTTTTTTATG
20222433 TATTCTTATTTT
1 TATT-TTATTTT
*
20222445 TGTTATTA-TTT
1 TATT-TTATTTT
20222456 TA-TTTA-TTT
1 TATTTTATTTT
20222465 TATTTTTATTTT
1 TA-TTTTATTTT
*
20222477 TCTTTTGATTTT
1 TATTTT-ATTTT
*
20222489 TATTTTCATTTC
1 TATTTT-ATTTT
*
20222501 AATTTTATTATTT
1 TATTTTA-T-TTT
20222514 TATTTT
1 TATTTT
20222520 GAAAGACATA
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
9 8 0.14
10 1 0.02
11 13 0.22
12 30 0.51
13 7 0.12
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:20222463 original size:27 final size:26
Alignment explanation
Indices: 20222421--20222471 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
20222411 TGAATCCTCC
*
20222421 TATTTTTTTATGTATTCTTATTTTTGT
1 TATTATTTTATGTATT-TTATTTTTGT
*
20222448 TATTATTTTATTTATTTTATTTTT
1 TATTATTTTATGTATTTTATTTTT
20222472 ATTTTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (26 bp):
TATTATTTTATGTATTTTATTTTTGT
Found at i:20222489 original size:7 final size:6
Alignment explanation
Indices: 20222433--20222499 Score: 53
Period size: 6 Copynumber: 10.8 Consensus size: 6
20222423 TTTTTTTATG
* * * * *
20222433 TATTCT TATTTT TGTTAT TATTTT ATTTATTT TATTTT TATTTT TCTTTT
1 TATTTT TATTTT TATTTT TATTTT -TAT-TTT TATTTT TATTTT TATTTT
* *
20222483 GATTTT TATTTT CATTT
1 TATTTT TATTTT TATTT
20222500 CAATTTTATT
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
6 40 0.85
7 4 0.09
8 3 0.06
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.76
Consensus pattern (6 bp):
TATTTT
Found at i:20226000 original size:29 final size:28
Alignment explanation
Indices: 20225958--20226018 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
20225948 GTGAGCATGA
*
20225958 ATATAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
*
20225986 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAACAGGCC
20226015 ATAT
1 ATAT
20226019 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:20226031 original size:29 final size:29
Alignment explanation
Indices: 20225965--20226109 Score: 125
Period size: 29 Copynumber: 5.1 Consensus size: 29
20225955 TGAATATAAG
* * * *
20225965 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
20225994 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * *
20226023 ATGAATTGGGCCTGATGGGCTATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * * *
20226052 GTGACTTGGGCTTGATGGACCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
20226081 GAG-A-TGGGCC-AAGTGGGCCATATGCAT
1 GTGAATTGGGCCTAA-TGGGCCATATGAAT
20226108 GT
1 GT
20226110 ATGTAGGGGT
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 18 0.19
29 75 0.80
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:20228195 original size:15 final size:15
Alignment explanation
Indices: 20228171--20228202 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
20228161 CTAATTAGCA
20228171 TAAAAAGTTTAGACT
1 TAAAAAGTTTAGACT
*
20228186 TAAAATGTTTAGACT
1 TAAAAAGTTTAGACT
20228201 TA
1 TA
20228203 GTCTTTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (15 bp):
TAAAAAGTTTAGACT
Found at i:20228378 original size:29 final size:29
Alignment explanation
Indices: 20228343--20228403 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
20228333 GTTTTTATAT
20228343 TTTGATTTTCAATTATTTCTAAACCATAG
1 TTTGATTTTCAATTATTTCTAAACCATAG
20228372 TTTGATTTTCAATTATTTCTAAACCATAG
1 TTTGATTTTCAATTATTTCTAAACCATAG
20228401 TTT
1 TTT
20228404 TTATATACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.51
Consensus pattern (29 bp):
TTTGATTTTCAATTATTTCTAAACCATAG
Found at i:20234424 original size:29 final size:28
Alignment explanation
Indices: 20234391--20234445 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
20234381 TGCGTGATAA
*
20234391 ACTGATTTGGCTT-GAGGCCATGCATATCG
1 ACTGATTTGACTTCGA-GCCATG-ATATCG
20234420 ACTGATTTGACTTCGAGCCATGATAT
1 ACTGATTTGACTTCGAGCCATGATAT
20234446 TAGTATTTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 4 0.17
29 18 0.75
30 2 0.08
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (28 bp):
ACTGATTTGACTTCGAGCCATGATATCG
Found at i:20239488 original size:16 final size:17
Alignment explanation
Indices: 20239458--20239501 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
20239448 TTATTTTCTC
*
20239458 AAAAATTTAATTAATAT
1 AAAATTTTAATTAATAT
*
20239475 AAAATTTTAA-TAATTT
1 AAAATTTTAATTAATAT
20239491 AATAATTTTAA
1 AA-AATTTTAA
20239502 AAATTAGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATTTTAATTAATAT
Found at i:20239502 original size:25 final size:25
Alignment explanation
Indices: 20239461--20239531 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
20239451 TTTTCTCAAA
*
20239461 AATTTAATTAATATAAAATTTTA-AT
1 AATTTAA-TAATTTAAAATTTTAGAT
*
20239486 AATTTAATAATTTTAAAA-ATTAGAT
1 AATTTAATAA-TTTAAAATTTTAGAT
* *
20239511 AATTGAATAAAATTAAAATTT
1 AATTTAAT-AATTTAAAATTT
20239532 AGGAGAAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
24 6 0.16
25 28 0.76
26 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (25 bp):
AATTTAATAATTTAAAATTTTAGAT
Found at i:20239512 original size:17 final size:17
Alignment explanation
Indices: 20239463--20239531 Score: 56
Period size: 17 Copynumber: 4.1 Consensus size: 17
20239453 TTCTCAAAAA
*
20239463 TTTAATTAATATAA-AAT
1 TTTAATAAAT-TAATAAT
*
20239480 TTTAATAATTTAATAAT
1 TTTAATAAATTAATAAT
20239497 TTTAA-AAATTAGATAA-
1 TTTAATAAATTA-ATAAT
*
20239513 TTGAATAAAATTAA-AAT
1 TTTAAT-AAATTAATAAT
20239530 TT
1 TT
20239532 AGGAGAAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 14 0.33
17 23 0.53
18 6 0.14
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTAATAAATTAATAAT
Found at i:20239533 original size:25 final size:25
Alignment explanation
Indices: 20239474--20239533 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
20239464 TTAATTAATA
* **
20239474 TAAAATTTTA-ATAATTTAATAATTT
1 TAAAA-TTTAGATAATTGAATAAAAT
*
20239499 TAAAAATTAGATAATTGAATAAAAT
1 TAAAATTTAGATAATTGAATAAAAT
20239524 TAAAATTTAG
1 TAAAATTTAG
20239534 GAGAAAGATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 3 0.10
25 26 0.90
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (25 bp):
TAAAATTTAGATAATTGAATAAAAT
Found at i:20246056 original size:26 final size:26
Alignment explanation
Indices: 20246027--20246081 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
20246017 CTACGTCCTT
*
20246027 CATGATGGGGTTTAGTCTTCGTTGTC
1 CATGATGAGGTTTAGTCTTCGTTGTC
20246053 CATGATGAGGTTTAGTCTTCGTTGTC
1 CATGATGAGGTTTAGTCTTCGTTGTC
20246079 CAT
1 CAT
20246082 CAATCGTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.15, C:0.16, G:0.27, T:0.42
Consensus pattern (26 bp):
CATGATGAGGTTTAGTCTTCGTTGTC
Found at i:20250286 original size:30 final size:29
Alignment explanation
Indices: 20250231--20250294 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 29
20250221 ATGAATCGGA
***
20250231 AGCTTTGGCACTAAGTGTGTGATTTAAACT
1 AGCTTTGGCACTAAGTGTCCAATTT-AACT
20250261 AGCTTTGGCACTAAGTGTCCAATTTAACT
1 AGCTTTGGCACTAAGTGTCCAATTTAACT
20250290 AGCTT
1 AGCTT
20250295 CGGCTACTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTCCAATTTAACT
Found at i:20258786 original size:39 final size:39
Alignment explanation
Indices: 20258732--20258895 Score: 256
Period size: 39 Copynumber: 4.2 Consensus size: 39
20258722 GAAATGTGTA
20258732 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
20258771 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
20258810 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
20258849 TGGAAATGTATCTGAGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
20258888 TGGTAATA
1 TGGAAATA
20258896 AAATTTCGGG
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:20267079 original size:31 final size:30
Alignment explanation
Indices: 20267044--20267106 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
20267034 TCCTTAACTC
20267044 AAACTTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTT-GAAAAATTACAATTTTGCCCCT
* * * *
20267075 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
20267105 AA
1 AA
20267107 GGTCGGGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:20276670 original size:29 final size:27
Alignment explanation
Indices: 20276647--20276706 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
20276637 CGCCACATAT
20276647 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
* * * *
20276673 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGGCCTAGCCACA
20276700 ATATCTG
1 ATATCTG
20276707 GCAACTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGGCCTAGCCACA
Found at i:20277502 original size:48 final size:48
Alignment explanation
Indices: 20277429--20277540 Score: 163
Period size: 48 Copynumber: 2.3 Consensus size: 48
20277419 GGTGTTACAG
*
20277429 CCGATGCCATGTCCCAGACAAGGTCTCACACAGGCACATATA-CTATCG
1 CCGATGCCATGTCCCAGACAAGGTCTCACACAGGCACATATATC-ATCA
* * * *
20277477 TCGATGCTATGTCCCAGACATGGTCTTACACAGGCACATATATCATCA
1 CCGATGCCATGTCCCAGACAAGGTCTCACACAGGCACATATATCATCA
20277525 CCGATGCCATGTCCCA
1 CCGATGCCATGTCCCA
20277541 TGTAACACCC
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 55 0.98
49 1 0.02
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACAAGGTCTCACACAGGCACATATATCATCA
Found at i:20280685 original size:15 final size:14
Alignment explanation
Indices: 20280665--20280694 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
20280655 TTAAATCACG
*
20280665 AAAATTTCACAGAA
1 AAAAATTCACAGAA
20280679 AAAAATTCACAGAA
1 AAAAATTCACAGAA
20280693 AA
1 AA
20280695 TAAACACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.13, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAAATTCACAGAA
Found at i:20291855 original size:40 final size:40
Alignment explanation
Indices: 20291750--20292043 Score: 388
Period size: 40 Copynumber: 7.5 Consensus size: 40
20291740 CGGATGATAA
* * *
20291750 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
* * *
20291791 CCGGGCTAAGTCGCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
20291831 CCGAGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
20291871 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
20291911 CC-GG----GTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
20291946 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
20291986 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
20292026 CC-GGCTAAATCACGAAGG
1 CCGGGCTAAGTCCCGAAGG
20292044 TACTTGGTTG
Statistics
Matches: 230, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
35 33 0.14
36 2 0.01
39 19 0.08
40 140 0.61
41 36 0.16
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:20291942 original size:75 final size:76
Alignment explanation
Indices: 20291758--20292043 Score: 337
Period size: 75 Copynumber: 3.7 Consensus size: 76
20291748 AACCGGGCTA
* * * * *
20291758 AGTCCCGAAGGCATTTGTGCTAGTGACTAATAACCGGGCTAAGTCGCGAAGGCATTTGTGCTAGT
1 AGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
*
20291823 GACTA-ATTCCGAG
65 TACTATA-TCCG-G
*
20291836 CTAAGTCCCGAAGGTATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 ---AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
20291901 GTTACTATATCCGG
63 GTTACTATATCCGG
20291915 -GTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
1 AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
*
20291979 ACTATAACCGGG
66 ACTATATCC-GG
* * * *
20291991 CTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGTCC-GGCTAAATCACGAAGG
1 ---AGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
20292044 TACTTGGTTG
Statistics
Matches: 185, Mismatches: 13, Indels: 16
0.86 0.06 0.07
Matches are distributed among these distances:
75 71 0.38
76 2 0.01
79 17 0.09
80 69 0.37
81 26 0.14
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (76 bp):
AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT
ACTATATCCGG
Found at i:20291962 original size:115 final size:118
Alignment explanation
Indices: 20291746--20292017 Score: 390
Period size: 115 Copynumber: 2.3 Consensus size: 118
20291736 TATTCGGATG
* *
20291746 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATAACCGGGCTAAGTCGCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATAACCGGG---AGTCCCGAAGGC
* *
20291811 ATTTGTGCTAGTGACTAATTCCGAGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
63 ATTTGTGCGAGTGACTAATTCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
20291867 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC-GG-GTCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATAACCGGGAGTCCCGAAGGCATT
* *
20291929 TGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TGTGCGAGTGACTAAT-TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
20291982 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
20292018 AGCTATGTCC
Statistics
Matches: 139, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
114 2 0.01
115 93 0.67
119 2 0.01
120 5 0.04
121 37 0.27
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (118 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATAACCGGGAGTCCCGAAGGCATT
TGTGCGAGTGACTAATTCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:20294445 original size:49 final size:47
Alignment explanation
Indices: 20294150--20296174 Score: 2830
Period size: 47 Copynumber: 42.6 Consensus size: 47
20294140 CCCTTCGGGA
* * * * *
20294150 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
20294197 ATTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
20294244 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
20294291 CTTATCAC--ATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
20294336 CTTAATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTT-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20294384 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20294431 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20294480 CTTATCAAATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20294527 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20294576 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
20294625 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * * *
20294672 CTTATCACACATACACA-TGTTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * * *
20294719 CTTATCACACATACACA-TGTTCACATTCATCGCATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
20294766 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
20294813 CTTATCACACATACACA-TGTTCACATTCATCACATTGTCCATTCA-GC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATT-AGGC
* *
20294860 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20294909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20294956 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20295005 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20295052 CTTATCATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20295099 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295146 CTTATCACATACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20295195 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
20295244 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * * *
20295291 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
20295338 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
20295385 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
20295432 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
20295479 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295528 CTTATCACATATATACACTTTCACATTCATCAC-TCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295574 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20295623 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295670 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295719 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295765 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295814 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295863 CTTATCA-ATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20295908 CTTATCACATATATATACACTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20295957 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
20296003 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20296050 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20296099 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
20296148 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
20296175 TATTCAAATA
Statistics
Matches: 1859, Mismatches: 79, Indels: 80
0.92 0.04 0.04
Matches are distributed among these distances:
45 54 0.03
46 119 0.06
47 963 0.52
48 122 0.07
49 597 0.32
50 2 0.00
51 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:20294959 original size:429 final size:426
Alignment explanation
Indices: 20294150--20296174 Score: 2914
Period size: 429 Copynumber: 4.7 Consensus size: 426
20294140 CCCTTCGGGA
* * * *
20294150 CTTATCAC-ATTTATACACTTCCACATCCATCACATTGGCCATTCGGCATTATCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
* *
20294214 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACA
66 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACA
* * *
20294278 TTGGCCATTCGGCCTTAT--CACATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTA
130 TTGGCCATTAGGCCTTATCACACATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTT-
20294340 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
193 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
20294405 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
258 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
* *
20294470 GCCATTAGGCCTTATCAAATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
321 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
20294535 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
386 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20294576 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
20294641 A-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCGTCA
65 ACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCA
* * * * *
20294704 CATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCGCATTGGCCATTCGGCCT
128 CATTGGCCATTAGGCCTTATCACACATATACACT-TTCACATTCATCACATCGGCCATTAGGCCT
* * * *
20294768 TATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-T
192 TATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
* *
20294831 GTTCACATTCATCACATTGTCCATTCA-GCCTTATCACATATATATACACTTTCACATTCATCAC
256 -TTCACATTCATCACATCGGCCATT-AGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
* *
20294895 ATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
317 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
20294960 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
382 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
20295005 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCATATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
*
20295069 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
* *
20295134 CGGCTATTAGGCCTTATCACATACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
131 TGGCCATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
20295199 TCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TG
194 TCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-
* * * * *
20295263 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATT
256 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATC
* * * * * *
20295327 GGCCATTCGACCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATC
320 GGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATC
* * * *
20295391 TC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
384 ACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
20295432 CTTATCAC-ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCACAATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
20295495 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
63 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
* *
20295560 C-TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
128 CATTGGCCATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
20295624 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACA
191 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACA
20295689 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
254 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
20295754 CGG-CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
319 CGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
20295818 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
382 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
20295863 CTTAT--CAATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
* * *
20295925 CACTTTCACATTGATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
* *
20295990 A-TGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
129 ATTGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
20296054 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
194 TCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACAC
20296119 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
255 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
20296175 TATTCAAATA
Statistics
Matches: 1463, Mismatches: 98, Indels: 73
0.90 0.06 0.04
Matches are distributed among these distances:
426 53 0.04
427 266 0.18
428 266 0.18
429 683 0.47
430 69 0.05
431 124 0.08
432 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (426 bp):
CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
TGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:20297569 original size:85 final size:85
Alignment explanation
Indices: 20297440--20297618 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
20297430 TATTTTATTG
*
20297440 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
20297505 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
20297525 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
20297590 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
20297610 CCCATGCTC
1 CCCATGCTC
20297619 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:20300123 original size:27 final size:27
Alignment explanation
Indices: 20300083--20300194 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
20300073 AGGAAGCGTC
*
20300083 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
20300110 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
** *
20300137 CTACTGGCTCTGCCACGATTATCTGCAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
20300165 CTGCTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
20300191 CTGG
1 CTGG
20300195 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.66
28 17 0.24
ACGTcount: A:0.16, C:0.27, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:20300189 original size:54 final size:54
Alignment explanation
Indices: 20300087--20300192 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
20300077 AGCGTCCTGG
* * *
20300087 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTAC
1 TGGCTATGCCACAATTATCTGATCTGCTGACTCTGCCACATATATCTGTTCTAC
* * *
20300141 TGGCTCTGCCACGATTATCTGCATCTGCTGACTCTGTCACAT-TATCTGTTCT
1 TGGCTATGCCACAATTATCTG-ATCTGCTGACTCTGCCACATATATCTGTTCT
20300193 GGCAGCCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 28 0.62
55 17 0.38
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.38
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGCTGACTCTGCCACATATATCTGTTCTAC
Found at i:20303822 original size:28 final size:29
Alignment explanation
Indices: 20303791--20303889 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
20303781 GTGAACATGA
20303791 ATAT-AATGTGATTTGGCTCGAATGGGCC
1 ATATAAATGTGATTTGGCTCGAATGGGCC
* * *
20303819 ATATAAATGAGATTCGGC-CTAATGGGCC
1 ATATAAATGTGATTTGGCTCGAATGGGCC
* * *
20303847 ATATGAATGTGAATTGGGTCGAATGGGCC
1 ATATAAATGTGATTTGGCTCGAATGGGCC
*
20303876 ATATAAATGAGATT
1 ATATAAATGTGATT
20303890 GGGCCTAGTG
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
28 26 0.46
29 31 0.54
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGCTCGAATGGGCC
Found at i:20303880 original size:57 final size:57
Alignment explanation
Indices: 20303791--20303913 Score: 185
Period size: 57 Copynumber: 2.2 Consensus size: 57
20303781 GTGAACATGA
*
20303791 ATAT-AATGTGATTTGGCTCGAATGGGCCATATAAATGAGATTCGGCCTAATGGGCC
1 ATATGAATGTGAATTGGCTCGAATGGGCCATATAAATGAGATTCGGCCTAATGGGCC
* * * *
20303847 ATATGAATGTGAATTGGGTCGAATGGGCCATATAAATGAGATTGGGCCTAGTGTGCC
1 ATATGAATGTGAATTGGCTCGAATGGGCCATATAAATGAGATTCGGCCTAATGGGCC
*
20303904 ATATGCATGT
1 ATATGAATGT
20303914 ATGTAGGGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
56 4 0.07
57 56 0.93
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (57 bp):
ATATGAATGTGAATTGGCTCGAATGGGCCATATAAATGAGATTCGGCCTAATGGGCC
Found at i:20303904 original size:28 final size:28
Alignment explanation
Indices: 20303811--20303907 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
20303801 ATTTGGCTCG
*
20303811 AATGGGCCATATAAATGAGATTCGGCCT
1 AATGGGCCATATAAATGAGATTGGGCCT
* * * *
20303839 AATGGGCCATATGAATGTGAATTGGGTCG
1 AATGGGCCATATAAATGAG-ATTGGGCCT
20303868 AATGGGCCATATAAATGAGATTGGGCCT
1 AATGGGCCATATAAATGAGATTGGGCCT
* *
20303896 AGTGTGCCATAT
1 AATGGGCCATAT
20303908 GCATGTATGT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 34 0.60
29 23 0.40
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (28 bp):
AATGGGCCATATAAATGAGATTGGGCCT
Found at i:20323203 original size:27 final size:27
Alignment explanation
Indices: 20323165--20323245 Score: 162
Period size: 27 Copynumber: 3.0 Consensus size: 27
20323155 CTATGGCCGA
20323165 ACTAGGTTTTCTCTTCTTTGTTTCTTT
1 ACTAGGTTTTCTCTTCTTTGTTTCTTT
20323192 ACTAGGTTTTCTCTTCTTTGTTTCTTT
1 ACTAGGTTTTCTCTTCTTTGTTTCTTT
20323219 ACTAGGTTTTCTCTTCTTTGTTTCTTT
1 ACTAGGTTTTCTCTTCTTTGTTTCTTT
20323246 CTTATTTTGG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.07, C:0.19, G:0.11, T:0.63
Consensus pattern (27 bp):
ACTAGGTTTTCTCTTCTTTGTTTCTTT
Found at i:20323241 original size:14 final size:14
Alignment explanation
Indices: 20323170--20323241 Score: 62
Period size: 14 Copynumber: 5.3 Consensus size: 14
20323160 GCCGAACTAG
20323170 GTTTTCTCTTCTTT
1 GTTTTCTCTTCTTT
**
20323184 G-TTTCT-TTACTAG
1 GTTTTCTCTT-CTTT
20323197 GTTTTCTCTTCTTT
1 GTTTTCTCTTCTTT
**
20323211 G-TTTCT-TTACTAG
1 GTTTTCTCTT-CTTT
20323224 GTTTTCTCTTCTTT
1 GTTTTCTCTTCTTT
20323238 GTTT
1 GTTT
20323242 CTTTCTTATT
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
12 4 0.09
13 16 0.36
14 20 0.45
15 4 0.09
ACGTcount: A:0.06, C:0.18, G:0.11, T:0.65
Consensus pattern (14 bp):
GTTTTCTCTTCTTT
Found at i:20326292 original size:14 final size:13
Alignment explanation
Indices: 20326273--20326332 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
20326263 TGTTTTATTC
20326273 ATTATATTATTTTT
1 ATTATA-TATTTTT
*
20326287 ATTATATA-TTAT
1 ATTATATATTTTT
*
20326299 ATTATATACATTTT
1 ATTATATA-TTTTT
*
20326313 ATATACATATTTTT
1 AT-TATATATTTTT
20326327 A-TATAT
1 ATTATAT
20326333 TACTTATCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
12 15 0.39
13 2 0.05
14 16 0.42
15 5 0.13
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTATATATTTTT
Found at i:20326294 original size:16 final size:18
Alignment explanation
Indices: 20326265--20326298 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
20326255 TCAATATATG
20326265 TTTTATTCATTATATTAT
1 TTTTATTCATTATATTAT
20326283 TTTTATT-A-TATATTAT
1 TTTTATTCATTATATTAT
20326299 ATTATATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATTCATTATATTAT
Found at i:20326315 original size:21 final size:21
Alignment explanation
Indices: 20326273--20326316 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
20326263 TGTTTTATTC
* **
20326273 ATTATATTATTTTTATTATAT
1 ATTATATTATATACATTATAT
*
20326294 ATTATATTATATACATTTTAT
1 ATTATATTATATACATTATAT
20326315 AT
1 AT
20326317 ACATATTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTATATTATATACATTATAT
Found at i:20326328 original size:25 final size:26
Alignment explanation
Indices: 20326283--20326331 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
20326273 ATTATATTAT
*
20326283 TTTTATTATATATTATATTATATACA
1 TTTTATTACATATTATATTATATACA
20326309 TTTTATATACATATT-T-TTATATA
1 TTTTAT-TACATATTATATTATATA
20326332 TTACTTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 7 0.33
27 7 0.33
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (26 bp):
TTTTATTACATATTATATTATATACA
Found at i:20337090 original size:60 final size:60
Alignment explanation
Indices: 20336983--20337202 Score: 257
Period size: 60 Copynumber: 3.7 Consensus size: 60
20336973 GAAGTACTAG
* * *
20336983 CAGTTTATC-ATCATT-TCTAGTAGCTTGTCCACAATACTGATAGCTTGTTTGCAATATTGA
1 CAGTTTATCTA-CATTAT-TAGTGGCTTGTCCACAATACTGATAACTTGTCTGCAATATTGA
* * * * *
20337043 CAGTTTATCTACATTATTAGAGGCTTCTCCATAATACTGAAAACTTGTCTACAATATTGA
1 CAGTTTATCTACATTATTAGTGGCTTGTCCACAATACTGATAACTTGTCTGCAATATTGA
* * * * * *
20337103 TAGTTTATCTACATTATTGGTGGCTTATTCACAACACTGATAACTTGTCTGTAATATTGA
1 CAGTTTATCTACATTATTAGTGGCTTGTCCACAATACTGATAACTTGTCTGCAATATTGA
* *
20337163 CAGTTTATCTACAATACTAGTGGCTTGTCCACAA-ACTGAT
1 CAGTTTATCTACATTATTAGTGGCTTGTCCACAATACTGAT
20337203 GTGTTATTGG
Statistics
Matches: 134, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
59 6 0.04
60 126 0.94
61 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (60 bp):
CAGTTTATCTACATTATTAGTGGCTTGTCCACAATACTGATAACTTGTCTGCAATATTGA
Found at i:20339827 original size:46 final size:46
Alignment explanation
Indices: 20339760--20339978 Score: 275
Period size: 46 Copynumber: 4.7 Consensus size: 46
20339750 AACCCACCCC
* * * *
20339760 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
20339806 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
20339852 TAAGTGAACTCGGACTCAACTCAATGAGTTC-GA-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
20339898 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
20339945 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
20339979 TGCTCAACCA
Statistics
Matches: 148, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.03
45 4 0.03
46 102 0.69
47 28 0.19
48 4 0.03
49 4 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:20339931 original size:93 final size:93
Alignment explanation
Indices: 20339811--20339981 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
20339801 ATCCATAAGT
*
20339811 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
20339876 TGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
20339904 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
20339969 CGAGTTCGGATGC
66 CGAGTTCGAATGC
20339982 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:20345255 original size:25 final size:25
Alignment explanation
Indices: 20345206--20345255 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
20345196 CCTTATAACA
* * * *
20345206 TAAAAATGACCGTTTTGCCCTTAGG
1 TAAAAATGACCATTATACCCCTAGG
20345231 TAAAAATGACCATTATACCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
20345256 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAGG
Found at i:20345358 original size:20 final size:20
Alignment explanation
Indices: 20345292--20345358 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
20345282 ATTTTGATAA
*
20345292 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
20345312 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
20345332 AAATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
20345352 ACTTGAT
1 ACATGAT
20345359 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:20345435 original size:24 final size:24
Alignment explanation
Indices: 20345408--20345550 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
20345398 GAGGAAATGA
20345408 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
20345432 AAAACGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
20345456 AAAAGGGCTTACGCCCCAATTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
20345479 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
20345503 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
20345527 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20345551 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
23 20 0.19
24 73 0.70
25 11 0.11
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:20345500 original size:47 final size:47
Alignment explanation
Indices: 20345407--20345529 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
20345397 GGAGGAAATG
*
20345407 AAAAAGGGCTTATGCCCCAGTTATCAAAACGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT-TAAACGGCTTATGCCCCAGTTAT
* * * *
20345455 CAAAAGGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAACGGCTTATGCCCCAGTTAT
*
20345502 AAAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAAGGGCTTATGCCCCAGTTATTAAA
20345530 AGAGGCTAGG
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 45 0.68
48 21 0.32
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAACGGCTTATGCCCCAGTTAT
Found at i:20345741 original size:31 final size:31
Alignment explanation
Indices: 20345706--20345769 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
20345696 CGTTTACAGT
*
20345706 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
20345737 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
20345768 AA
1 AA
20345770 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:20347760 original size:16 final size:16
Alignment explanation
Indices: 20347741--20347772 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
20347731 AATTGTTTTA
20347741 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
20347757 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
20347773 CATTTTATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:20348032 original size:50 final size:50
Alignment explanation
Indices: 20347967--20348354 Score: 350
Period size: 50 Copynumber: 7.7 Consensus size: 50
20347957 ACCGAAGCTC
* *
20347967 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* ** * * * *
20348017 TCTGGTACACGTAGTAGCCT-AAAATAGTACTAGACATGTGACATAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * * * * ** *
20348066 TCTAATACATGTAGTAGCCTACACTTATTACTACACACGAGATCAAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
** * * *
20348118 -AGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * *
20348167 TCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * ** *
20348217 TTTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * *
20348269 T-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
20348318 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
20348355 CGTGACTCAC
Statistics
Matches: 261, Mismatches: 70, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
49 46 0.18
50 144 0.55
51 67 0.26
52 4 0.02
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:20348067 original size:49 final size:49
Alignment explanation
Indices: 20347992--20348086 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 49
20347982 AGCCTGCACT
* * **
20347992 TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTAAAA
1 TAGTACTACACATGCGACATAACAATCTAATACACGTAGTAGCCTAAAA
* * *
20348041 TAGTACTAGACATGTGACATAACAATCTAATACATGTAGTAGCCTA
1 TAGTACTACACATGCGACATAACAATCTAATACACGTAGTAGCCTA
20348087 CACTTATTAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTACTACACATGCGACATAACAATCTAATACACGTAGTAGCCTAAAA
Found at i:20348275 original size:101 final size:101
Alignment explanation
Indices: 20348170--20348359 Score: 281
Period size: 101 Copynumber: 1.9 Consensus size: 101
20348160 CTATCAATCT
* * * * *
20348170 GGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACTTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACAACACACGCGACCTAACAATCTGATACACGTAGTAGC
20348235 CTACACTTAGTACTACACACGTGATCGAAGTTAATG
66 CTACACTTAGTACTACACACGTGATCGAAGTTAATG
* * * * *
20348271 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACAACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
20348336 CTGCACTTAGTACTACACACGTGA
66 CTACACTTAGTACTACACACGTGA
20348360 CTCACAATGA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACAACACACGCGACCTAACAATCTGATACACGTAGTAGC
CTACACTTAGTACTACACACGTGATCGAAGTTAATG
Found at i:20348284 original size:151 final size:151
Alignment explanation
Indices: 20347970--20348361 Score: 633
Period size: 151 Copynumber: 2.6 Consensus size: 151
20347960 GAAGCTCTCT
20347970 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* ** * * * * *
20348035 CT-AAAATAGTACTAGACATGTGACATAACAATCTAATACATGTAGTAGCCTACACTTATTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACAATCTAATACACGTAGTAGCCTACACTTAGTACTA
20348099 CACACGAGATCAAAGTTAAAG
131 CACACGAGATCAAAGTTAAAG
*
20348120 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
20348185 CTGCACTTAGTACAACACACGTGACTTAACCATTTGATACACGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACAATCTAATACACGTAGTAGCCTACACTTAGTACTA
* * *
20348250 CACACGTGATCGAAGTTAATG
131 CACACGAGATCAAAGTTAAAG
20348271 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
20348336 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
20348362 CACAATGACT
Statistics
Matches: 223, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
150 66 0.30
151 157 0.70
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACAATCTAATACACGTAGTAGCCTACACTTAGTACTA
CACACGAGATCAAAGTTAAAG
Found at i:20348737 original size:19 final size:20
Alignment explanation
Indices: 20348709--20348755 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
20348699 AAGAACAAGT
20348709 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
20348730 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
20348749 TATATAT
1 TATATAT
20348756 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:20349034 original size:30 final size:30
Alignment explanation
Indices: 20348977--20349035 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
20348967 CAAAAATCAT
* *
20348977 ACTTTTATAAATTTACATTTTGACCCCTAA
1 ACTTTTACAAATTTACACTTTGACCCCTAA
* * *
20349007 ACTTTTACATATTTGCACTTTGGCCCCTA
1 ACTTTTACAAATTTACACTTTGACCCCTA
20349036 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.42
Consensus pattern (30 bp):
ACTTTTACAAATTTACACTTTGACCCCTAA
Found at i:20351540 original size:29 final size:31
Alignment explanation
Indices: 20351478--20351543 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
20351468 ATAATCATAC
20351478 TAGTCCATATATTTCATTTTTTTTCACATTT
1 TAGTCCATATATTTCATTTTTTTTCACATTT
* *
20351509 TAGTCCCTTTATTT-ATTATTTTTTCA-A-TT
1 TAGTCCATATATTTCATT-TTTTTTCACATTT
20351538 TAGTCC
1 TAGTCC
20351544 TAATTACTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 8 0.25
30 4 0.12
31 20 0.62
ACGTcount: A:0.21, C:0.17, G:0.05, T:0.58
Consensus pattern (31 bp):
TAGTCCATATATTTCATTTTTTTTCACATTT
Found at i:20354510 original size:23 final size:23
Alignment explanation
Indices: 20354482--20354527 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
20354472 ATCACGAGAG
20354482 TAGATCAATATATCATCAATGAA
1 TAGATCAATATATCATCAATGAA
*
20354505 TAGATCAATATATCATCAGTGAA
1 TAGATCAATATATCATCAATGAA
20354528 CACAACTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (23 bp):
TAGATCAATATATCATCAATGAA
Found at i:20360625 original size:46 final size:46
Alignment explanation
Indices: 20360482--20360625 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 46
20360472 CCCGCCCATA
*
20360482 AGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCCCA--TACATC-CT
* * * * *
20360531 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
* *
20360575 AGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
20360621 AGTGA
1 AGTGA
20360626 CATGTCACTT
Statistics
Matches: 75, Mismatches: 13, Indels: 17
0.71 0.12 0.16
Matches are distributed among these distances:
44 8 0.11
46 34 0.45
47 29 0.39
49 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:20376490 original size:16 final size:16
Alignment explanation
Indices: 20376469--20376503 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
20376459 GTTTACAGCA
*
20376469 TGATAGTATGATTTTG
1 TGATAGTATGATTGTG
20376485 TGATAGTATGATTGTG
1 TGATAGTATGATTGTG
20376501 TGA
1 TGA
20376504 AATTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (16 bp):
TGATAGTATGATTGTG
Found at i:20380808 original size:48 final size:48
Alignment explanation
Indices: 20380650--20380835 Score: 185
Period size: 48 Copynumber: 3.9 Consensus size: 48
20380640 ACAATTGGGT
* * * *
20380650 GACATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC
1 GACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * * * *
20380698 -ATTATGAGAGCCAGTGTAAGGCCATGCCTGGGACATGGCATTGGCATT
1 GA-CATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
20380746 GAGACGAGATCTAGTGTAAGACCATGTATAGGACATGGCATCGGCCTC
1 GACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** *
20380794 GACATGTTAGCTAGTGTAAGACCATGTCTGGAACATGGCATC
1 GACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
20380836 TGTAATTTAC
Statistics
Matches: 106, Mismatches: 30, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
47 1 0.01
48 104 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:20380830 original size:96 final size:96
Alignment explanation
Indices: 20380660--20380834 Score: 235
Period size: 96 Copynumber: 1.8 Consensus size: 96
20380650 GACATGTGTG
* * * *
20380660 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGGCCATGC
1 CTAGTGTAAGACCATGTATAGGACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGC
*
20380725 CTGGGACATGGCATTGGCATTGAGACGAGAT
66 CTGGAACATGGCATTGGCATTGAGACGAGAT
* * ** *
20380756 CTAGTGTAAGACCATGTATAGGACATGGCATCGGCCTCGA-CATGTTAGCTAGTGTAAGACCATG
1 CTAGTGTAAGACCATGTATAGGACATGGCATCGACCAC-ATCATGAGAGCCAGTGTAAGACCATG
*
20380820 TCTGGAACATGGCAT
65 CCTGGAACATGGCAT
20380835 CTGTAATTTA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
96 66 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (96 bp):
CTAGTGTAAGACCATGTATAGGACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGC
CTGGAACATGGCATTGGCATTGAGACGAGAT
Done.