Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 7 of 253
Found at i:1929560 original size:10 final size:10
Alignment explanation
Indices: 1929547--1929599 Score: 58
Period size: 10 Copynumber: 5.6 Consensus size: 10
1929537 AGATAAAATT
1929547 TAAAAAAAAG
1 TAAAAAAAAG
1929557 TAAAAAAAAG
1 TAAAAAAAAG
* *
1929567 --GACAAAAG
1 TAAAAAAAAG
*
1929575 TTAAAAAAAG
1 TAAAAAAAAG
1929585 TAAAAAAAAG
1 TAAAAAAAAG
1929595 -AAAAA
1 TAAAAA
1929600 TAAGGAAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
8 6 0.17
9 5 0.14
10 25 0.69
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.09
Consensus pattern (10 bp):
TAAAAAAAAG
Found at i:1929566 original size:28 final size:26
Alignment explanation
Indices: 1929535--1929600 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 26
1929525 AAATAAGTAT
1929535 AAAGATAAAATTTAAAAAAAAGTAAAAA
1 AAAGA-AAAATTT-AAAAAAAGTAAAAA
*
1929563 AAAGGACAAAAGTTAAAAAAAGTAAAAA
1 AAA-GA-AAAATTTAAAAAAAGTAAAAA
1929591 AAAGAAAAAT
1 AAAGAAAAAT
1929601 AAGGAAAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.12
27 2 0.06
28 20 0.59
29 8 0.24
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.14
Consensus pattern (26 bp):
AAAGAAAAATTTAAAAAAAGTAAAAA
Found at i:1938949 original size:12 final size:13
Alignment explanation
Indices: 1938926--1938954 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1938916 CTTTGTGTGT
1938926 TTTTATTTTTTTA
1 TTTTATTTTTTTA
1938939 TTTTA-TTTTTTA
1 TTTTATTTTTTTA
1938951 TTTT
1 TTTT
1938955 CACATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:1939238 original size:8 final size:9
Alignment explanation
Indices: 1939201--1939264 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 9
1939191 ATATCTTTTA
1939201 AAAAATTAT
1 AAAAATTAT
* *
1939210 AAAATTTTCAA
1 AAAA-ATT-AT
1939221 AAAAATTAT
1 AAAAATTAT
1939230 AAAAATATAT
1 AAAAAT-TAT
1939240 AAAGAAATT-T
1 -AA-AAATTAT
1939250 AAAAATTA-
1 AAAAATTAT
1939258 AAAAATT
1 AAAAATT
1939265 TCTAAAATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
8 12 0.27
9 13 0.29
10 8 0.18
11 8 0.18
12 4 0.09
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:1946606 original size:8 final size:8
Alignment explanation
Indices: 1946593--1946626 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
1946583 ACAATTAATT
1946593 AATTTAAA
1 AATTTAAA
*
1946601 ATTTTAAA
1 AATTTAAA
1946609 AATTTAAA
1 AATTTAAA
*
1946617 AATTCAAA
1 AATTTAAA
1946625 AA
1 AA
1946627 AATATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (8 bp):
AATTTAAA
Found at i:1948120 original size:16 final size:15
Alignment explanation
Indices: 1948099--1948144 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
1948089 AAAATTTTTA
*
1948099 ATAAATAAAAAATAT
1 ATAAATTAAAAATAT
1948114 ATAAAATTAAAAATAT
1 AT-AAATTAAAAATAT
1948130 -TAAATTAAAAATAT
1 ATAAATTAAAAATAT
1948144 A
1 A
1948145 AATATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 13 0.46
15 3 0.11
16 12 0.43
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAATTAAAAATAT
Found at i:1948155 original size:16 final size:14
Alignment explanation
Indices: 1948107--1948156 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
1948097 TAATAAATAA
1948107 AAAATATATAAAATT
1 AAAA-ATATAAAATT
*
1948122 AAAAATATTAAATT
1 AAAAATATAAAATT
1948136 AAAAATATAAATATT
1 AAAAATATAAA-ATT
*
1948151 TAAAAT
1 AAAAAT
1948157 TTTTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAATATAAAATT
Found at i:1952788 original size:18 final size:20
Alignment explanation
Indices: 1952753--1952791 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
1952743 AAACCTTTAA
1952753 TTTTCTCTTTTCTTCTTTCT
1 TTTTCTCTTTTCTTCTTTCT
1952773 TTTTCTC-TTT-TTCTTTCT
1 TTTTCTCTTTTCTTCTTTCT
1952791 T
1 T
1952792 CCTTCCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
19 3 0.16
20 7 0.37
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTCTCTTTTCTTCTTTCT
Found at i:1953022 original size:3 final size:3
Alignment explanation
Indices: 1953014--1953071 Score: 52
Period size: 3 Copynumber: 20.0 Consensus size: 3
1953004 TATCAATTTA
* *
1953014 AAT AAT AAT AAC AAT AAT AAT AAT AAT TA- AAT -AT AA- AACT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
1953056 AAT AAAT AAT AAT AAT
1 AAT -AAT AAT AAT AAT
1953072 TTAATATATA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
2 6 0.13
3 36 0.80
4 3 0.07
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1953308 original size:14 final size:14
Alignment explanation
Indices: 1953289--1953318 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1953279 GATTAACTTC
*
1953289 ATAAATATTTTTTA
1 ATAAATATTTTCTA
1953303 ATAAATATTTTCTA
1 ATAAATATTTTCTA
1953317 AT
1 AT
1953319 CCATTTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
ATAAATATTTTCTA
Found at i:1956131 original size:46 final size:45
Alignment explanation
Indices: 1956071--1956344 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 45
1956061 TTTGACATGA
* * * * * * *
1956071 TGCCATAGTGTCTTTCAACTACGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GC
** *
1956117 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GC
1956163 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GC
1956209 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG-C
* *
1956255 TGCCATGGTATTTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG-C
1956301 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1956345 AGAGTACACT
Statistics
Matches: 212, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 5 0.02
46 207 0.98
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGC
Found at i:1956345 original size:46 final size:46
Alignment explanation
Indices: 1956117--1956345 Score: 388
Period size: 46 Copynumber: 5.0 Consensus size: 46
1956107 TCTGTCATGT
** *
1956117 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACG-C
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GAC
*
1956163 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
1956209 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
* *
1956255 TGCCATGGTATTTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
1956301 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGA
1956346 GAGTACACTC
Statistics
Matches: 175, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 1 0.01
46 174 0.99
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAC
Found at i:1958367 original size:21 final size:21
Alignment explanation
Indices: 1958329--1958374 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1958319 CTGCTTTCTG
* *
1958329 TTTCGTCTGCTTTGTTTCTTT
1 TTTCGTCTCCTTTATTTCTTT
1958350 ATTTC-TCTCCTTTATTTCTTT
1 -TTTCGTCTCCTTTATTTCTTT
1958371 TTTC
1 TTTC
1958375 CTTTTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 4 0.18
ACGTcount: A:0.04, C:0.22, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTCGTCTCCTTTATTTCTTT
Found at i:1964491 original size:17 final size:17
Alignment explanation
Indices: 1964457--1964507 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
1964447 ATTACATTTA
*
1964457 TAATATAAAA-AAATAAT
1 TAATATAAAATTAA-AAT
1964474 TAATATAAAATTAAAAT
1 TAATATAAAATTAAAAT
*
1964491 TAAAATTAAAATTAAAA
1 TAATA-TAAAATTAAAA
1964508 ATATTAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 17 0.57
18 13 0.43
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAATATAAAATTAAAAT
Found at i:1964516 original size:6 final size:6
Alignment explanation
Indices: 1964479--1964507 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
1964469 ATAATTAATA
1964479 TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
1964508 ATATTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
TAAAAT
Found at i:1969839 original size:27 final size:27
Alignment explanation
Indices: 1969809--1969861 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
1969799 TTAGAAGTGC
* *
1969809 GACTAGTTGAGCCTTTCTCAGAGGCGT
1 GACTAATTGAGCCTATCTCAGAGGCGT
*
1969836 GACTAATTGTGCCTATCTCAGAGGCG
1 GACTAATTGAGCCTATCTCAGAGGCG
1969862 CAAATGGTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (27 bp):
GACTAATTGAGCCTATCTCAGAGGCGT
Found at i:1982197 original size:16 final size:16
Alignment explanation
Indices: 1982176--1982206 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1982166 GCTCATGCAG
*
1982176 ATTCATGCACGTAAGA
1 ATTCATGCACATAAGA
1982192 ATTCATGCACATAAG
1 ATTCATGCACATAAG
1982207 TTGTCCGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (16 bp):
ATTCATGCACATAAGA
Found at i:1988762 original size:3 final size:3
Alignment explanation
Indices: 1988749--1988782 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
1988739 TATTATCCAA
*
1988749 ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1988783 CCATTGTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:1988915 original size:22 final size:22
Alignment explanation
Indices: 1988868--1988918 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
1988858 ATTCCTTTTC
*
1988868 TATTATTATTTATTATATTGTA
1 TATTATTATTGATTATATTGTA
1988890 TATTATTATTAGATTATCA-TGT-
1 TATTATTATT-GATTAT-ATTGTA
1988912 TATTATT
1 TATTATT
1988919 TCTTTCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 17 0.65
23 8 0.31
24 1 0.04
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (22 bp):
TATTATTATTGATTATATTGTA
Found at i:1989056 original size:3 final size:3
Alignment explanation
Indices: 1989050--1989421 Score: 146
Period size: 3 Copynumber: 124.7 Consensus size: 3
1989040 TTTTTACTAC
* ** *
1989050 ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT TTT ACC ATCT AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
* * * *
1989095 A-T ATT ACT A-T ACCTT ATT ATT ATT ATT ATT ACT ATT -GT ATT AGT
1 ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
1989139 ACT ATT ATT ATT A-C ATT -TT CTT TTT ATT ACT ATT ACT A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
1989184 TTT A-T CTT ATT -TCCT ATT ATT GTT ATC ATT ATT ATT AAT ACT AAT
1 ATT ATT ATT ATT AT--T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
1989229 ATA AAT ATT CTT ATT ATT ACTT -TT ATT ATT ATC ATT AGT ATT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
1989274 ATT -TGT ACT ACT ATT ATT ATT ACT ATC ATT -TAT ATT -TC ATT ATT
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
* * * *
1989318 ATT ATT AGT GTT ACT ATT -TCT ATT ATT GTT -TT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
1989362 ATT ATTT ATTT GTT ATT ATG GTT GTT ATT ATT ATT ACCTC ATT ATTT
1 ATT A-TT A-TT ATT ATT ATT ATT ATT ATT ATT ATT A--TT ATT A-TT
1989409 ATT ATT -TT ATT AT
1 ATT ATT ATT ATT AT
1989422 CGTCTATTAG
Statistics
Matches: 273, Mismatches: 67, Indels: 58
0.69 0.17 0.15
Matches are distributed among these distances:
2 24 0.09
3 229 0.84
4 15 0.05
5 5 0.02
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:1989172 original size:22 final size:23
Alignment explanation
Indices: 1989141--1989188 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
1989131 GTATTAGTAC
* * *
1989141 TATTATTATTAC-ATTTTCTTTT
1 TATTACTATTACTATATTATTTT
1989163 TATTACTATTACTATATTATTTT
1 TATTACTATTACTATATTATTTT
1989186 TAT
1 TAT
1989189 CTTATTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTACTATTACTATATTATTTT
Found at i:1989352 original size:35 final size:38
Alignment explanation
Indices: 1989313--1989397 Score: 104
Period size: 35 Copynumber: 2.3 Consensus size: 38
1989303 TTATATTTCA
* *
1989313 TTATTATTATTAGTGTTA-CTATTT-CTATTATTGTT-
1 TTATTATTATTAGTATTATCTATTTGCTATTATGGTTG
* * *
1989348 TTATTATTATTATTATTATTTATTTGTTATTATGGTTG
1 TTATTATTATTAGTATTATCTATTTGCTATTATGGTTG
1989386 TTATTATTATTA
1 TTATTATTATTA
1989398 CCTCATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
35 16 0.38
36 5 0.12
37 9 0.21
38 12 0.29
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (38 bp):
TTATTATTATTAGTATTATCTATTTGCTATTATGGTTG
Found at i:1989368 original size:32 final size:32
Alignment explanation
Indices: 1989312--1989421 Score: 50
Period size: 32 Copynumber: 3.3 Consensus size: 32
1989302 TTTATATTTC
*
1989312 ATTATTATTATTAGTGTTACTATTTCTATTATTGTT
1 ATTATTATTATTA-T-TTA-TATTTC-ATTATTATT
*
1989348 -TTATTATTATTA-TTATTATTT-ATTTGTTATT
1 ATTATTATTATTATTTA-TATTTCA-TTATTATT
** * **
1989379 ATGGTTGTTATTA-TTATTACCTCATTATTTATT
1 ATTATTATTATTATTTA-TATTTCATTA-TTATT
1989412 ATT-TTATTAT
1 ATTATTATTAT
1989422 CGTCTATTAG
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
30 1 0.02
31 6 0.10
32 32 0.54
33 8 0.14
35 12 0.20
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.64
Consensus pattern (32 bp):
ATTATTATTATTATTTATATTTCATTATTATT
Found at i:1989507 original size:3 final size:3
Alignment explanation
Indices: 1989492--1989567 Score: 59
Period size: 3 Copynumber: 26.0 Consensus size: 3
1989482 TTAAAGAAAA
* * * * * *
1989492 TAT TAT TAC TAT TAT TAT TAT CAT TAC TAC TAT ATAT TAT TAG CA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
1989537 TAT TAT TAT TAT T-T TCT T-T TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1989568 CCTTATTAAC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
2 5 0.08
3 52 0.87
4 3 0.05
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:1989507 original size:24 final size:25
Alignment explanation
Indices: 1989452--1989508 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
1989442 ACCTTTTTTG
* *
1989452 TATATTAAGGAAAATATATTAGATTA
1 TATATTAAAGAAAATATATTA-ACTA
1989478 TATATTAAAGAAAATATTATT-ACTA
1 TATATTAAAGAAAATA-TATTAACTA
1989503 T-TATTA
1 TATATTA
1989509 TTATCATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.18
25 4 0.14
26 15 0.54
27 4 0.14
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (25 bp):
TATATTAAAGAAAATATATTAACTA
Found at i:2020511 original size:32 final size:32
Alignment explanation
Indices: 2020444--2020687 Score: 326
Period size: 32 Copynumber: 7.6 Consensus size: 32
2020434 CCCGAGGTGC
* *
2020444 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
2020477 ACATTTCCTTTTCAAGTGTGCACACAAAGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2020509 ACATTTTCTTTTCAAGTGCACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2020541 ACAAATACTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2020573 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2020605 ACAAATCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2020637 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2020669 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2020688 CACCCTTTTA
Statistics
Matches: 185, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
32 170 0.92
33 15 0.08
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2020573 original size:96 final size:96
Alignment explanation
Indices: 2020451--2020687 Score: 366
Period size: 96 Copynumber: 2.5 Consensus size: 96
2020441 TGCACATTCC
* * * ** *
2020451 CTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTGCACACAAAGGGTACATTTT
1 CTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
*
2020516 CTTTTCAAGTGCACACACAAAGTGTACAAATA
65 CTTTTCAAGTGCACACACAAAGTCTACAAATA
* *
2020548 CTTTTCAAGTGTACATACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCC
1 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATCC
* *
2020613 TTTTCAAGTGTACACACAAAGTCTACAAATC
66 TTTTCAAGTGCACACACAAAGTCTACAAATA
2020644 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2020688 CACCCTTTTA
Statistics
Matches: 128, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
96 119 0.93
97 9 0.07
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (96 bp):
CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATCC
TTTTCAAGTGCACACACAAAGTCTACAAATA
Found at i:2030351 original size:24 final size:24
Alignment explanation
Indices: 2030319--2030368 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
2030309 AAGTCTATCT
2030319 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATCAG
*
2030343 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATCAG
2030367 GG
1 GG
2030369 TGAACTGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.06, G:0.44, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATCAG
Found at i:2034194 original size:15 final size:16
Alignment explanation
Indices: 2034171--2034208 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2034161 AATAAATAAG
*
2034171 AAAATTATAAA-CATAT
1 AAAA-TATAAATCAAAT
2034187 AAAATATAAATCAAAT
1 AAAATATAAATCAAAT
2034203 AAAATA
1 AAAATA
2034209 AAAAAAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATATAAATCAAAT
Found at i:2034507 original size:21 final size:22
Alignment explanation
Indices: 2034482--2034541 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
2034472 TAATAAACTT
2034482 TATAAACAAAATATATAA-TAA
1 TATAAACAAAATATATAAGTAA
2034503 TATAAAC--AATATGATAAGTAA
1 TATAAACAAAATAT-ATAAGTAA
2034524 TATATAA-AATAATATATA
1 TATA-AACAA-AATATATA
2034542 TTAAAATGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
19 5 0.15
20 4 0.12
21 14 0.42
22 2 0.06
23 3 0.09
24 5 0.15
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (22 bp):
TATAAACAAAATATATAAGTAA
Found at i:2034525 original size:12 final size:11
Alignment explanation
Indices: 2034491--2034598 Score: 53
Period size: 12 Copynumber: 9.5 Consensus size: 11
2034481 TTATAAACAA
2034491 AATATATAA-T
1 AATATATAAGT
*
2034501 AATATA-AA-C
1 AATATATAAGT
2034510 AATATGATAAGT
1 AATAT-ATAAGT
*
2034522 AATATATAAAAT
1 AATATAT-AAGT
*
2034534 AATATAT-ATT
1 AATATATAAGT
* *
2034544 AAAATGTAAGT
1 AATATATAAGT
*
2034555 AATATAATATATAAT
1 -A-AT-ATATA-AGT
*
2034570 AATATATAAAT
1 AATATATAAGT
*
2034581 AATATAATAAAT
1 AATAT-ATAAGT
2034593 AATATA
1 AATATA
2034599 CAAAGAAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
9 7 0.09
10 14 0.18
11 15 0.19
12 32 0.41
13 3 0.04
14 5 0.06
15 2 0.03
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (11 bp):
AATATATAAGT
Found at i:2034529 original size:33 final size:33
Alignment explanation
Indices: 2034492--2034598 Score: 99
Period size: 33 Copynumber: 3.1 Consensus size: 33
2034482 TATAAACAAA
*
2034492 ATATATAATAATATAAACAATATGATAAGTAAT
1 ATATATAATAATATAAATAATATGATAAGTAAT
* * *
2034525 ATATAAAATAATATATATTAAAATG-TAAGTAATAT
1 ATATATAATAATATA-AATAATATGATAAGT-A-AT
* *
2034560 AATATATAATAATATATAAATAATATAATAAATAAT
1 -ATATATAAT-A-ATATAAATAATATGATAAGTAAT
2034596 ATA
1 ATA
2034599 CAAAGAAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
33 19 0.33
34 7 0.12
35 5 0.09
36 10 0.17
37 8 0.14
38 9 0.16
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.36
Consensus pattern (33 bp):
ATATATAATAATATAAATAATATGATAAGTAAT
Found at i:2034561 original size:26 final size:26
Alignment explanation
Indices: 2034527--2034596 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
2034517 TAAGTAATAT
* * *
2034527 ATAAAATAATATATATTAAAATGTAA
1 ATAATATAATATATAATAAAATATAA
* *
2034553 GTAATATAATATATAATAATATATAA
1 ATAATATAATATATAATAAAATATAA
*
2034579 ATAATATAATAAATAATA
1 ATAATATAATATATAATA
2034597 TACAAAGAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (26 bp):
ATAATATAATATATAATAAAATATAA
Found at i:2034610 original size:26 final size:26
Alignment explanation
Indices: 2034555--2034610 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
2034545 AAATGTAAGT
* * * *
2034555 AATATAATATATAATAATATATAAAT
1 AATATAATAAATAATAATACAAAAAA
2034581 AATATAATAAATAAT-ATACAAAGAAA
1 AATATAATAAATAATAATACAAA-AAA
2034607 AATA
1 AATA
2034611 ATATATACCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AATATAATAAATAATAATACAAAAAA
Found at i:2036180 original size:44 final size:44
Alignment explanation
Indices: 2036130--2036864 Score: 817
Period size: 44 Copynumber: 16.5 Consensus size: 44
2036120 AAACTCACGA
* *
2036130 ATGCCAAATCTGTTATCTCCGATCTGCTCTCTGACAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
2036174 ATGCCAAATCTGCTATCTTCAATCTGCTCTCTAACAATATAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
2036218 ATGCTAAATCTGCTATATTCGATCTG-TGCTCTGACAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCT-CTCTGACAATACAGAG
* * * ** * *
2036262 ACGCCAAATCTGCTATCTTCGATCTTCTATCTTCGATTTTCTCT-CTGACA
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTC-T-GA----CAATACAGA-G
* ** * * *
2036312 AT-ACAAAGATGTCAAATTTACTATCTTCGATCTGCTCTCTGTCAATATAGAG
1 ATGCCAAATCTG-C---TAT-CT-TC---GATCTGCTCTCTGACAATACAGAG
* *
2036364 ATTCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
2036408 ATGCCAAATCTGCTATCTTTGATCTGCTCACTGACAAAACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
2036452 ATGCCAAATCTGCTATCTTCGATCTGCTCTCT-ATCAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAG
* *
2036496 ATGCCAAATCTGCTATCCTCGATCTGCTCTCTGTCAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* ** * *
2036540 ATGCCAAATTTGCTATCCACGATTTGCTTTCTGACAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
2036584 ATGCCAAATCTGCTATCTTCGA-ATGCTCTCTGATAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
2036627 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
2036671 ATGCCAAATCTGCTATCTTCGATTTGTTCTCTG---AT--AGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
2036710 ATGTCAAATCTGCTATCTTTGATCTGCTCTCT-ATCAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAG
* *
2036754 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTAACAATAGAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
2036798 ATGCCAAATCTGCTATCTTTGATCTGTTCTCTAACAATACAGAG
1 ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
2036842 ATGCCAAATCTGTTATCTTCGAT
1 ATGCCAAATCTGCTATCTTCGAT
2036865 ATACATTGTC
Statistics
Matches: 584, Mismatches: 77, Indels: 60
0.81 0.11 0.08
Matches are distributed among these distances:
39 32 0.05
41 2 0.00
42 2 0.00
43 42 0.07
44 453 0.78
45 3 0.01
46 2 0.00
47 2 0.00
48 2 0.00
49 11 0.02
50 4 0.01
52 5 0.01
53 9 0.02
54 2 0.00
55 2 0.00
56 1 0.00
57 1 0.00
58 9 0.02
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:2036291 original size:14 final size:14
Alignment explanation
Indices: 2036269--2036303 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2036259 GAGACGCCAA
*
2036269 ATCTGCTATCTTCG
1 ATCTTCTATCTTCG
2036283 ATCTTCTATCTTCG
1 ATCTTCTATCTTCG
*
2036297 ATTTTCT
1 ATCTTCT
2036304 CTCTGACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.14, C:0.26, G:0.09, T:0.51
Consensus pattern (14 bp):
ATCTTCTATCTTCG
Found at i:2036322 original size:102 final size:102
Alignment explanation
Indices: 2036181--2036391 Score: 255
Period size: 102 Copynumber: 2.1 Consensus size: 102
2036171 GAGATGCCAA
* * *
2036181 ATCTGCTATCTTCAATCTGCTCTCTAACAATATAGAGATG-CTAAATCTGCTATATTCGATCTG-
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATACAAAGATGTC-AAATCTACTATATTCGATCTGC
*
2036244 TGCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
65 T-CTCTGACAATACAGAGACGCCAAATCTACTATCTTCG
* * * * * * *
2036283 ATCTTCTATCTTCGATTTTCTCTCTGACAATACAAAGATGTCAAATTTACTATCTTCGATCTGCT
1 ATCTGCTATCTTCAATCTGCTCTCTAACAATACAAAGATGTCAAATCTACTATATTCGATCTGCT
* * **
2036348 CTCTGTCAATATAGAGATTCCAAATCTACTATCTTCG
66 CTCTGACAATACAGAGACGCCAAATCTACTATCTTCG
2036385 ATCTGCT
1 ATCTGCT
2036392 CTCTGACAAT
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
102 89 0.98
103 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (102 bp):
ATCTGCTATCTTCAATCTGCTCTCTAACAATACAAAGATGTCAAATCTACTATATTCGATCTGCT
CTCTGACAATACAGAGACGCCAAATCTACTATCTTCG
Found at i:2036525 original size:132 final size:132
Alignment explanation
Indices: 2036130--2036864 Score: 919
Period size: 132 Copynumber: 5.5 Consensus size: 132
2036120 AAACTCACGA
* * * *
2036130 ATGCCAAATCTGTTATCTCCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCA
1 ATGCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * * *
2036195 ATCTGCTCTCTAACAATATAGAGATGCTAAATCTGCTATATTCGATCTG-TGCTCTGACAATACA
66 ATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCT-CTCTGACAATACA
2036259 GAG
130 GAG
* * *
2036262 ACGCCAAATCTGCTATCTTCGATCTTCTATCTTCGATTTTCTCTCTGACAATACAAAGATGTCAA
1 ATGCCAAATCTGCTATCTTCG-------AT-TT-G-----CTCTCTGACAATACAGAGATGCCAA
* * * * * *
2036327 ATTTACTATCTTCGATCTGCTCTCTGTCAATATAGAGATTCCAAATCTACTATCTTCGATCTGCT
52 ATCTGCTATCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCT
2036392 CTCTGACAATACAGAG
117 CTCTGACAATACAGAG
* * * *
2036408 ATGCCAAATCTGCTATCTTTGATCTGCTCACTGACAAAACAGAGATGCCAAATCTGCTATCTTCG
1 ATGCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* *
2036473 ATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCCTCGATCTGCTCTCTGTCAATACAG
66 ATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
2036538 AG
131 AG
* ** *
2036540 ATGCCAAATTTGCTATCCACGATTTGCTTTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
1 ATGCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* *
2036605 A-ATGCTCTCTGAT-AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATA
66 ATCTGCTCTCT-ATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
2036668 GAG
130 GAG
* * *
2036671 ATGCCAAATCTGCTATCTTCGATTTGTTCTCTG---AT--AGAGATGTCAAATCTGCTATCTTTG
1 ATGCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* *
2036731 ATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTAACAATAGAG
66 ATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
2036796 AG
131 AG
* * * * *
2036798 ATGCCAAATCTGCTATCTTTGATCTGTTCTCTAACAATACAGAGATGCCAAATCTGTTATCTTCG
1 ATGCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
2036863 AT
66 AT
2036865 ATACATTGTC
Statistics
Matches: 522, Mismatches: 58, Indels: 46
0.83 0.09 0.07
Matches are distributed among these distances:
126 26 0.05
127 89 0.17
128 2 0.00
130 2 0.00
131 86 0.16
132 196 0.38
137 1 0.00
138 1 0.00
139 4 0.01
140 1 0.00
141 1 0.00
146 112 0.21
147 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (132 bp):
ATGCCAAATCTGCTATCTTCGATTTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
ATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
AG
Found at i:2050313 original size:26 final size:26
Alignment explanation
Indices: 2050283--2050338 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
2050273 TGAAATTCCC
2050283 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
2050309 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
2050335 ATCA
1 ATCA
2050339 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:2051588 original size:15 final size:16
Alignment explanation
Indices: 2051570--2051602 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2051560 ATAAGCAAAT
*
2051570 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
2051585 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
2051601 TA
1 TA
2051603 AAAAAGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:2051926 original size:33 final size:35
Alignment explanation
Indices: 2051882--2051988 Score: 103
Period size: 33 Copynumber: 3.0 Consensus size: 35
2051872 TTATAAAAAA
* *
2051882 ATATATCATAATATAAACAATATGATAAGTAATAT
1 ATATATAATAATATAAATAATATGATAAGTAATAT
* *
2051917 ATA-A-AATAATATATATTAAAATG-TAAGTAATAT
1 ATATATAATAATATA-AATAATATGATAAGTAATAT
* *
2051950 AATATATAATAAAATATAAATAATATAATAAATAATAT
1 -ATATATAAT--AATATAAATAATATGATAAGTAATAT
2051988 A
1 A
2051989 CAAAGAAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
33 18 0.32
34 10 0.18
35 4 0.07
36 3 0.05
37 7 0.12
38 15 0.26
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (35 bp):
ATATATAATAATATAAATAATATGATAAGTAATAT
Found at i:2051951 original size:26 final size:26
Alignment explanation
Indices: 2051917--2051986 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
2051907 TAAGTAATAT
* * *
2051917 ATAAAATAATATATATTAAAATGTAA
1 ATAATATAATATATAATAAAATATAA
*
2051943 GTAATATAATATATAATAAAATATAA
1 ATAATATAATATATAATAAAATATAA
*
2051969 ATAATATAATAAATAATA
1 ATAATATAATATATAATA
2051987 TACAAAGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (26 bp):
ATAATATAATATATAATAAAATATAA
Found at i:2051977 original size:19 final size:17
Alignment explanation
Indices: 2051945--2051981 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
2051935 AAATGTAAGT
2051945 AATATAATATATAATAA
1 AATATAATATATAATAA
2051962 AATATAAATAATATAATAA
1 AATAT-AAT-ATATAATAA
2051981 A
1 A
2051982 TAATATACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AATATAATATATAATAA
Found at i:2051980 original size:12 final size:12
Alignment explanation
Indices: 2051894--2051988 Score: 65
Period size: 12 Copynumber: 8.0 Consensus size: 12
2051884 ATATCATAAT
* *
2051894 ATAAACAATATG
1 ATAAATAATATA
*
2051906 ATAAGTAATAT-
1 ATAAATAATATA
2051917 ATAAAATAATATA
1 AT-AAATAATATA
* *
2051930 TATTAA-AATGTA
1 -ATAAATAATATA
2051942 AGTAATATAATAT-
1 A-TAA-ATAATATA
*
2051955 AT-AATAAAAT-
1 ATAAATAATATA
2051965 ATAAATAATATA
1 ATAAATAATATA
2051977 ATAAATAATATA
1 ATAAATAATATA
2051989 CAAAGAAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
10 8 0.12
11 11 0.17
12 37 0.56
13 4 0.06
14 6 0.09
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (12 bp):
ATAAATAATATA
Found at i:2052094 original size:28 final size:30
Alignment explanation
Indices: 2052056--2052114 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
2052046 GATTTAAAAT
2052056 AAATTGAATTT-ATATAAAAAA-AGGATTA
1 AAATTGAATTTAATATAAAAAATAGGATTA
* * *
2052084 AAATTTAATTTAATTTAAAAAATAGGGTTA
1 AAATTGAATTTAATATAAAAAATAGGATTA
2052114 A
1 A
2052115 TTACAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 10 0.38
29 9 0.35
30 7 0.27
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (30 bp):
AAATTGAATTTAATATAAAAAATAGGATTA
Found at i:2053608 original size:32 final size:32
Alignment explanation
Indices: 2053537--2053748 Score: 266
Period size: 32 Copynumber: 6.6 Consensus size: 32
2053527 CCCGAGGTGC
* * *
2053537 ACATTCCCTTTTCAAATGGTTCACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
*
2053570 ACATTTCCTTTTCAAGTGTACACA-AAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAA-GTGT
*
2053602 ACATTTCCTTTTCAAGTGTACACATAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* * *
2053634 ACAAATT-CTTTTTAAGTGTACATACAAAGTGT
1 AC-ATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2053666 ACGTTTCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2053698 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2053730 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2053749 CACCCTTTCG
Statistics
Matches: 154, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
31 5 0.03
32 128 0.83
33 21 0.14
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2061773 original size:17 final size:17
Alignment explanation
Indices: 2061751--2061784 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2061741 GTTATTGGCC
2061751 AATAAAACAAATCATGT
1 AATAAAACAAATCATGT
2061768 AATAAAACAAATCATGT
1 AATAAAACAAATCATGT
2061785 GTGTATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.24
Consensus pattern (17 bp):
AATAAAACAAATCATGT
Found at i:2063277 original size:31 final size:31
Alignment explanation
Indices: 2063235--2063311 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
2063225 GAACAGTACC
* *
2063235 ACACACACCCGTGTGGTC-AGGCTGTGTGATT
1 ACACACGCCCGTGTGGTCAAGTC-GTGTGATT
*
2063266 ACACATGCCCGTGTGGTCAAGTCGTGTGATT
1 ACACACGCCCGTGTGGTCAAGTCGTGTGATT
2063297 ACACACGCCCGTGTG
1 ACACACGCCCGTGTG
2063312 ACTTGGGACA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 38 0.93
32 3 0.07
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (31 bp):
ACACACGCCCGTGTGGTCAAGTCGTGTGATT
Found at i:2067197 original size:25 final size:27
Alignment explanation
Indices: 2067160--2067212 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
2067150 TCAAACATGC
2067160 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
2067186 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
2067212 A
1 A
2067213 AAACTGTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:2068726 original size:32 final size:32
Alignment explanation
Indices: 2068689--2068753 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
2068679 AATGCTTACC
2068689 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
2068721 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
2068753 A
1 A
2068754 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:2073620 original size:13 final size:12
Alignment explanation
Indices: 2073586--2073624 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
2073576 GAGTACTACT
2073586 CGGCCTCGACCA
1 CGGCCTCGACCA
2073598 CGGCCTCGACCA
1 CGGCCTCGACCA
2073610 CGGCTCTCGACCA
1 CGGC-CTCGACCA
2073623 CG
1 CG
2073625 CTCTTCGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.15, C:0.49, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:2076737 original size:32 final size:32
Alignment explanation
Indices: 2076700--2076764 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
2076690 AATGCTTACC
2076700 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
2076732 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
2076764 A
1 A
2076765 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:2080957 original size:31 final size:31
Alignment explanation
Indices: 2080898--2081036 Score: 170
Period size: 32 Copynumber: 4.4 Consensus size: 31
2080888 TGCACATTCC
* *
2080898 CTTTTCAAATGGTACACAGAAAGTGTACATTT
1 CTTTTCAAGT-GTACACACAAAGTGTACATTT
* *
2080930 CTTTTCAAGTGTACACACAAGGGGTACATTT
1 CTTTTCAAGTGTACACACAAAGTGTACATTT
* * *
2080961 CTTTTCAAGTGTACACACAAAGTCTACAAATC
1 CTTTTCAAGTGTACACACAAAGTGTAC-ATTT
* *
2080993 CTTTTCAAGTGTACATACAAAGTGTACGTTT
1 CTTTTCAAGTGTACACACAAAGTGTACATTT
2081024 CCTTTTCAAGTGT
1 -CTTTTCAAGTGT
2081037 CACCCTTTCG
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
31 43 0.47
32 48 0.53
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (31 bp):
CTTTTCAAGTGTACACACAAAGTGTACATTT
Found at i:2080966 original size:63 final size:64
Alignment explanation
Indices: 2080891--2081032 Score: 171
Period size: 63 Copynumber: 2.2 Consensus size: 64
2080881 CCTGAGGTGC
* * * * * *
2080891 ACATTCCCTTTTCAAATGGTACACAGAAAGTGTAC-ATTTCTTTTCAAGTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAAT-GTACACACAAAGTCTACAAATCCTTTTCAAGTGTACACACAAAGGGT
* * *
2080955 ACATTT-CTTTTCAAGTGTACACACAAAGTCTACAAATCCTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAATGTACACACAAAGTCTACAAATCCTTTTCAAGTGTACACACAAAGGGT
*
2081018 ACGTTTCCTTTTCAA
1 ACATTTCCTTTTCAA
2081033 GTGTCACCCT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
62 15 0.23
63 38 0.58
64 13 0.20
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (64 bp):
ACATTTCCTTTTCAAATGTACACACAAAGTCTACAAATCCTTTTCAAGTGTACACACAAAGGGT
Found at i:2089452 original size:33 final size:34
Alignment explanation
Indices: 2089415--2089483 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
2089405 CCTATTTTTC
2089415 ACCCAACTTT-ACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
2089448 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
2089482 AC
1 AC
2089484 ATGTATGTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 10 0.29
34 25 0.71
ACGTcount: A:0.35, C:0.30, G:0.03, T:0.32
Consensus pattern (34 bp):
ACCCAACTTTAACCATTTTCCTACATGAAAACTT
Found at i:2090207 original size:32 final size:32
Alignment explanation
Indices: 2090148--2090391 Score: 335
Period size: 32 Copynumber: 7.6 Consensus size: 32
2090138 CCCGAGGTGC
* *
2090148 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
2090181 ACATTTCCTTTTCAAGTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
2090213 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2090245 ACAAATCCTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2090277 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2090309 ACAAATCCTTTTCAAGTGTACAGACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2090341 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2090373 ACGTTTCCTTTTCAGGTGT
1 ACATTTCCTTTTCAAGTGT
2090392 CACCCTTTTG
Statistics
Matches: 187, Mismatches: 24, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
32 172 0.92
33 15 0.08
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2090278 original size:96 final size:96
Alignment explanation
Indices: 2090154--2090391 Score: 377
Period size: 96 Copynumber: 2.5 Consensus size: 96
2090144 GTGCACATTC
* * * **
2090154 CCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTACACACAAGGGGTACATTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAAT
*
2090219 CCTTTTCAAGTGTACACACAAAGTGTACAAAT
65 CCTTTTCAAGTGTACACACAAAGTCTACAAAT
* *
2090251 CCTTTTCAAGTGTACATACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATC
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
*
2090316 CTTTTCAAGTGTACAGACAAAGTCTACAAAT
66 CTTTTCAAGTGTACACACAAAGTCTACAAAT
*
2090347 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAGGTGT
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2090392 CACCCTTTTG
Statistics
Matches: 130, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
96 120 0.92
97 10 0.08
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (96 bp):
CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
CTTTTCAAGTGTACACACAAAGTCTACAAAT
Found at i:2098930 original size:32 final size:32
Alignment explanation
Indices: 2098863--2099106 Score: 326
Period size: 32 Copynumber: 7.6 Consensus size: 32
2098853 CCCGAGGTGC
* *
2098863 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
2098896 ACATTTCCTTTTCAAGTGTGCACACAAAGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2098928 ACATTTTCTTTTCAAGTGCACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2098960 ACAAATACTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2098992 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2099024 ACAAATCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2099056 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2099088 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2099107 CACCCTTTTA
Statistics
Matches: 185, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
32 170 0.92
33 15 0.08
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2098992 original size:96 final size:96
Alignment explanation
Indices: 2098870--2099106 Score: 366
Period size: 96 Copynumber: 2.5 Consensus size: 96
2098860 TGCACATTCC
* * * ** *
2098870 CTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTGCACACAAAGGGTACATTTT
1 CTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
*
2098935 CTTTTCAAGTGCACACACAAAGTGTACAAATA
65 CTTTTCAAGTGCACACACAAAGTCTACAAATA
* *
2098967 CTTTTCAAGTGTACATACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCC
1 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATCC
* *
2099032 TTTTCAAGTGTACACACAAAGTCTACAAATC
66 TTTTCAAGTGCACACACAAAGTCTACAAATA
2099063 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2099107 CACCCTTTTA
Statistics
Matches: 128, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
96 119 0.93
97 9 0.07
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (96 bp):
CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATCC
TTTTCAAGTGCACACACAAAGTCTACAAATA
Found at i:2107461 original size:32 final size:32
Alignment explanation
Indices: 2107394--2107637 Score: 326
Period size: 32 Copynumber: 7.6 Consensus size: 32
2107384 CCCGAGGTGC
* *
2107394 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
2107427 ACATTTCCTTTTCAAGTGTGCACACAAAGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2107459 ACATTTTCTTTTCAAGTGCACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2107491 ACAAATACTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2107523 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2107555 ACAAATCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2107587 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2107619 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2107638 CACCCTTTTA
Statistics
Matches: 185, Mismatches: 26, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
32 170 0.92
33 15 0.08
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2107523 original size:96 final size:96
Alignment explanation
Indices: 2107401--2107637 Score: 366
Period size: 96 Copynumber: 2.5 Consensus size: 96
2107391 TGCACATTCC
* * * ** *
2107401 CTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTGCACACAAAGGGTACATTTT
1 CTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
*
2107466 CTTTTCAAGTGCACACACAAAGTGTACAAATA
65 CTTTTCAAGTGCACACACAAAGTCTACAAATA
* *
2107498 CTTTTCAAGTGTACATACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCC
1 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATCC
* *
2107563 TTTTCAAGTGTACACACAAAGTCTACAAATC
66 TTTTCAAGTGCACACACAAAGTCTACAAATA
2107594 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2107638 CACCCTTTTA
Statistics
Matches: 128, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
96 119 0.93
97 9 0.07
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (96 bp):
CTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATCC
TTTTCAAGTGCACACACAAAGTCTACAAATA
Found at i:2111181 original size:12 final size:13
Alignment explanation
Indices: 2111158--2111186 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
2111148 AGCTACTTCA
2111158 GCCTCGGACCACG
1 GCCTCGGACCACG
2111171 GCCTC-GACCACG
1 GCCTCGGACCACG
2111183 GCCT
1 GCCT
2111187 TCCCGAGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.48, G:0.28, T:0.10
Consensus pattern (13 bp):
GCCTCGGACCACG
Found at i:2114392 original size:33 final size:33
Alignment explanation
Indices: 2114346--2114410 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
2114336 GCTTACCATA
2114346 GCCCATTCATCCATTAACTATTAAAATGCTAAT
1 GCCCATTCATCCATTAACTATTAAAATGCTAAT
2114379 GCCCA-TCACTCCATTAACTATTAAAATGCTAA
1 GCCCATTCA-TCCATTAACTATTAAAATGCTAA
2114411 AATGCATACA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (33 bp):
GCCCATTCATCCATTAACTATTAAAATGCTAAT
Found at i:2117588 original size:60 final size:60
Alignment explanation
Indices: 2117520--2117638 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
2117510 AGGCCCGATG
2117520 TAACTCTCTGTTTTTATGTCATCAACAAATTAGGGGCACACA-GC-AAGGCACACGCCCGTT
1 TAACTCTCTGTTTTTATGTCATCAACAAATTA-GGGC-CACAGGCAAAGGCACACGCCCGTT
2117580 TAACTCTCTGTTTTTATGTCATCAACAAATTAGGGCCACAGGCAAAGGCACACGCCCGT
1 TAACTCTCTGTTTTTATGTCATCAACAAATTAGGGCCACAGGCAAAGGCACACGCCCGT
2117639 GTTGCTTAGG
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
58 4 0.07
59 6 0.11
60 47 0.82
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (60 bp):
TAACTCTCTGTTTTTATGTCATCAACAAATTAGGGCCACAGGCAAAGGCACACGCCCGTT
Found at i:2122424 original size:12 final size:12
Alignment explanation
Indices: 2122407--2122435 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
2122397 TACTACTTCA
2122407 GCCTCGACCACG
1 GCCTCGACCACG
2122419 GCCTCGACCACG
1 GCCTCGACCACG
2122431 GCCTC
1 GCCTC
2122436 TTCCCCGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.52, G:0.24, T:0.10
Consensus pattern (12 bp):
GCCTCGACCACG
Found at i:2125608 original size:32 final size:32
Alignment explanation
Indices: 2125571--2125635 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
2125561 AATGCTTACC
2125571 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
2125603 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
2125635 A
1 A
2125636 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:2128790 original size:62 final size:62
Alignment explanation
Indices: 2128693--2128824 Score: 255
Period size: 62 Copynumber: 2.1 Consensus size: 62
2128683 CTTGGGACAA
*
2128693 GCCCGTGTAACTCTCTGTTTTTGATGTCATCAACAAATTAGGGGCACACAGCTAAGGCACAC
1 GCCCGTGTAACTCTCTGTTTTTGATGTCATCAACAAATTAGGGGCACACAGCAAAGGCACAC
2128755 GCCCGTGTAACTCTCTGTTTTTGATGTCATCAACAAATTAGGGGCACACAGCAAAGGCACAC
1 GCCCGTGTAACTCTCTGTTTTTGATGTCATCAACAAATTAGGGGCACACAGCAAAGGCACAC
2128817 GCCCGTGT
1 GCCCGTGT
2128825 GCTTAGGCCG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 69 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (62 bp):
GCCCGTGTAACTCTCTGTTTTTGATGTCATCAACAAATTAGGGGCACACAGCAAAGGCACAC
Found at i:2129893 original size:32 final size:32
Alignment explanation
Indices: 2129826--2129973 Score: 179
Period size: 32 Copynumber: 4.6 Consensus size: 32
2129816 CCTGAGGTGC
* * *
2129826 ACATTCCCTTTTCAAATGGTACACAGAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* * *
2129859 ACATTTCGTTTTCAAGTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2129891 ACATTTACTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2129923 ACAAATCCTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2129955 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2129974 CACCCTTTCG
Statistics
Matches: 96, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
32 82 0.85
33 14 0.15
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2140405 original size:33 final size:34
Alignment explanation
Indices: 2140368--2140436 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
2140358 CCTATTTTTC
2140368 ACCCAACTTT-ACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
2140401 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
2140435 AC
1 AC
2140437 ATGTATGTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 10 0.29
34 25 0.71
ACGTcount: A:0.35, C:0.30, G:0.03, T:0.32
Consensus pattern (34 bp):
ACCCAACTTTAACCATTTTCCTACATGAAAACTT
Found at i:2141111 original size:33 final size:33
Alignment explanation
Indices: 2141074--2141340 Score: 128
Period size: 33 Copynumber: 8.3 Consensus size: 33
2141064 ATGGACCTTT
* *
2141074 CCTTTTCCAGTTGCACACCCGAAGTGCACATTC
1 CCTTTTCAAGTTGCACACACGAAGTGCACATTC
* * * * * *
2141107 CCTTTTCAAATGGTACACACAAAGTGTACATTT
1 CCTTTTCAAGTTGCACACACGAAGTGCACATTC
* * * *
2141140 CCTTTTCAAG-TGTACACAC-AAGGGGTACATTT
1 CCTTTTCAAGTTGCACACACGAA-GTGCACATTC
* *
2141172 CCTTTTCCAGTTGCACAC-CTGAGGTGCACATTC
1 CCTTTTCAAGTTGCACACAC-GAAGTGCACATTC
* * * * *
2141205 CCTTTTCAAATGGTACACA-GAAAGTGTACATTT
1 CCTTTTCAAGTTGCACACACG-AAGTGCACATTC
* *
2141238 CCTTTTCAAG-TGTACACAC-AAG-GTACA-T-
1 CCTTTTCAAGTTGCACACACGAAGTGCACATTC
* * *
2141266 CCTTTTCAAG-TGTACACACAAAGT-CTACAAAT-
1 CCTTTTCAAGTTGCACACACGAAGTGC-AC-ATTC
* * * * * *
2141298 CCTTTTCAAG-TGTACATACAAAGTGTACGTTT
1 CCTTTTCAAGTTGCACACACGAAGTGCACATTC
2141330 CCTTTTCAAGT
1 CCTTTTCAAGT
2141341 GTCACCCTTT
Statistics
Matches: 188, Mismatches: 31, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
28 19 0.10
29 4 0.02
30 7 0.04
31 7 0.04
32 71 0.38
33 79 0.42
34 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (33 bp):
CCTTTTCAAGTTGCACACACGAAGTGCACATTC
Found at i:2141160 original size:32 final size:32
Alignment explanation
Indices: 2141071--2141342 Score: 266
Period size: 32 Copynumber: 8.5 Consensus size: 32
2141061 TCGATGGACC
* * * * *
2141071 TTTCCTTTTCCAGTTGCACACCCGAAGTGCACA
1 TTTCCTTTTCAAG-TGTACACACAAAGTGTACA
* *
2141104 TTCCCTTTTCAAATGGTACACACAAAGTGTACA
1 TTTCCTTTTCAAGT-GTACACACAAAGTGTACA
* *
2141137 TTTCCTTTTCAAGTGTACACACAAGGGGTACA
1 TTTCCTTTTCAAGTGTACACACAAAGTGTACA
* * * * *
2141169 TTTCCTTTTCCAGT-TGCACACCTGAGGTGCACA
1 TTTCCTTTTCAAGTGTACACA-C-AAAGTGTACA
* * *
2141202 TTCCCTTTTCAAATGGTACACAGAAAGTGTACA
1 TTTCCTTTTCAAGT-GTACACACAAAGTGTACA
2141235 TTTCCTTTTCAAGTGTACACAC-AAG-GTACA
1 TTTCCTTTTCAAGTGTACACACAAAGTGTACA
*
2141265 --TCCTTTTCAAGTGTACACACAAAGTCTACA
1 TTTCCTTTTCAAGTGTACACACAAAGTGTACA
** * *
2141295 AATCCTTTTCAAGTGTACATACAAAGTGTACG
1 TTTCCTTTTCAAGTGTACACACAAAGTGTACA
2141327 TTTCCTTTTCAAGTGT
1 TTTCCTTTTCAAGTGT
2141343 CACCCTTTCG
Statistics
Matches: 197, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
28 20 0.10
29 3 0.02
30 9 0.05
31 8 0.04
32 79 0.40
33 73 0.37
35 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (32 bp):
TTTCCTTTTCAAGTGTACACACAAAGTGTACA
Found at i:2141240 original size:98 final size:98
Alignment explanation
Indices: 2141071--2141342 Score: 371
Period size: 98 Copynumber: 2.8 Consensus size: 98
2141061 TCGATGGACC
2141071 TTTCCTTTTCCAGTTGCACACCCGAAGTGCACATTCCCTTTTCAAATGGTACACACAAAGTGTAC
1 TTTCCTTTTCCAGTTGCACACCCGAAGTGCACATTCCCTTTTCAAATGGTACACACAAAGTGTAC
2141136 ATTTCCTTTTCAAGTGTACACACAAGGGGTACA
66 ATTTCCTTTTCAAGTGTACACACAAGGGGTACA
* * *
2141169 TTTCCTTTTCCAGTTGCACACCTGAGGTGCACATTCCCTTTTCAAATGGTACACAGAAAGTGTAC
1 TTTCCTTTTCCAGTTGCACACCCGAAGTGCACATTCCCTTTTCAAATGGTACACACAAAGTGTAC
2141234 ATTTCCTTTTCAAGTGTACACACAA--GGTACA
66 ATTTCCTTTTCAAGTGTACACACAAGGGGTACA
* * * * * * *
2141265 --TCCTTTTCAAG-TGTACACACAAAGT-CTACAAAT-CCTTTTCAAGT-GTACATACAAAGTGT
1 TTTCCTTTTCCAGTTGCACACCCGAAGTGC-AC-ATTCCCTTTTCAAATGGTACACACAAAGTGT
*
2141324 ACGTTTCCTTTTCAAGTGT
64 ACATTTCCTTTTCAAGTGT
2141343 CACCCTTTCG
Statistics
Matches: 158, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
92 32 0.20
93 21 0.13
94 12 0.08
96 6 0.04
98 87 0.55
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (98 bp):
TTTCCTTTTCCAGTTGCACACCCGAAGTGCACATTCCCTTTTCAAATGGTACACACAAAGTGTAC
ATTTCCTTTTCAAGTGTACACACAAGGGGTACA
Found at i:2149492 original size:150 final size:150
Alignment explanation
Indices: 2149221--2149520 Score: 582
Period size: 150 Copynumber: 2.0 Consensus size: 150
2149211 TTATGGAAAG
2149221 ATTGAAAAGCATTATTTTACATTTTATCTTCAAAATAATATCTTTACTAGATGGTGGCGAATATA
1 ATTGAAAAGCATTATTTTACATTTTATCTTCAAAATAATATCTTTACTAGATGGTGGCGAATATA
*
2149286 ATTATGTTCCGTTAAATTTATAAATGTTATTTCGAAAAGTATAATCCTAATTATTCAATAAAAAT
66 ATTATGTTCCATTAAATTTATAAATGTTATTTCGAAAAGTATAATCCTAATTATTCAATAAAAAT
2149351 TGTTGATACAGGAATGTGGT
131 TGTTGATACAGGAATGTGGT
2149371 ATTGAAAAGCATTATTTTACATTTTATCTTCAAAATAATATCTTTACTAGATGGTGGCGAATATA
1 ATTGAAAAGCATTATTTTACATTTTATCTTCAAAATAATATCTTTACTAGATGGTGGCGAATATA
*
2149436 ATTATGTTCCATTAAATTTATAATTGTTATTTCGAAAAGTATAATCCTAATTATTCAATAAAAAT
66 ATTATGTTCCATTAAATTTATAAATGTTATTTCGAAAAGTATAATCCTAATTATTCAATAAAAAT
2149501 TGTTGATACAGGAATGTGGT
131 TGTTGATACAGGAATGTGGT
2149521 TTGGTGGTTG
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.40
Consensus pattern (150 bp):
ATTGAAAAGCATTATTTTACATTTTATCTTCAAAATAATATCTTTACTAGATGGTGGCGAATATA
ATTATGTTCCATTAAATTTATAAATGTTATTTCGAAAAGTATAATCCTAATTATTCAATAAAAAT
TGTTGATACAGGAATGTGGT
Found at i:2159549 original size:32 final size:31
Alignment explanation
Indices: 2159504--2159569 Score: 73
Period size: 30 Copynumber: 2.1 Consensus size: 31
2159494 AATTTAAAAA
*
2159504 AAATAGTTCTTAAAAGAAATGCAT-TATACACAT
1 AAATAATTCTT-AAAGAAA--CATATATACACAT
*
2159537 AAATAATT-TTAAAGAAACATATATATACAT
1 AAATAATTCTTAAAGAAACATATATACACAT
2159567 AAA
1 AAA
2159570 AGAAGTATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 3 0.10
30 11 0.37
31 7 0.23
32 2 0.07
33 7 0.23
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (31 bp):
AAATAATTCTTAAAGAAACATATATACACAT
Found at i:2163426 original size:15 final size:16
Alignment explanation
Indices: 2163406--2163438 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
2163396 GGTGTTTTAA
2163406 TTTTATTT-TTTATTT
1 TTTTATTTGTTTATTT
2163421 TTTTATTTGGTTTATTT
1 TTTTATTT-GTTTATTT
2163438 T
1 T
2163439 AGGTTGGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (16 bp):
TTTTATTTGTTTATTT
Found at i:2170484 original size:8 final size:8
Alignment explanation
Indices: 2170448--2170494 Score: 73
Period size: 7 Copynumber: 6.2 Consensus size: 8
2170438 AAAGCTAAAT
2170448 TAAAATAA
1 TAAAATAA
2170456 T-AAATAA
1 TAAAATAA
2170463 T-AAATAA
1 TAAAATAA
2170470 T-AAATAA
1 TAAAATAA
2170477 TAAAATAA
1 TAAAATAA
2170485 TAAAATAA
1 TAAAATAA
2170493 TA
1 TA
2170495 TCTTATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
7 21 0.55
8 17 0.45
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAAATAA
Found at i:2171563 original size:32 final size:32
Alignment explanation
Indices: 2171496--2171739 Score: 263
Period size: 32 Copynumber: 7.6 Consensus size: 32
2171486 CCCGAGATGC
* * *
2171496 ACATTCCCTTTTCAAATGGTACACATAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* * * *
2171529 ACATTTCCTTTTCAAGTGTACATATAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2171561 ACATTTCCTTTTCAAGTATACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2171593 ACAAATCCTTTTCAAGTGTACATAAAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* * *
2171625 ACGTTTCCTCTCCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2171657 ACAAATCCTTTTCAATTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2171689 ACAAATCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2171721 ACAAATCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2171740 CACCCTTTCA
Statistics
Matches: 181, Mismatches: 30, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
32 166 0.92
33 15 0.08
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2171593 original size:64 final size:64
Alignment explanation
Indices: 2171496--2171739 Score: 308
Period size: 64 Copynumber: 3.8 Consensus size: 64
2171486 CCCGAGATGC
* * * ** * * *
2171496 ACATTCCCTTTTCAAATGGTACACATAAAGTGTACATTTCCTTTTCAAGTGTACATATAAGGGGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGTACAAATCCTTTTCAAGTGTACATAAAAAGTGT
*
2171561 ACATTTCCTTTTCAAGTATACACACAAAGTGTACAAATCCTTTTCAAGTGTACATAAAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACATAAAAAGTGT
* * * * * * *
2171625 ACGTTTCCTCTCCAAGTGTACACACAAAGTGTACAAATCCTTTTCAATTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACATAAAAAGTGT
** *
2171689 ACAAATCCTTTTCAAGTGTACACACAAAGTCTACAAATCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGT
2171740 CACCCTTTCA
Statistics
Matches: 155, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
64 140 0.90
65 15 0.10
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (64 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACATAAAAAGTGT
Found at i:2171624 original size:96 final size:96
Alignment explanation
Indices: 2171502--2171739 Score: 296
Period size: 96 Copynumber: 2.5 Consensus size: 96
2171492 ATGCACATTC
* * * * * **
2171502 CCTTTTCAAATGGTACACATAAAGTGTACATTTCCTTTTCAAGTGTACATATAAGGGGTACATTT
1 CCTTTTCAAGT-GTACACAAAAAGTGTACATTTCCTTTTCAAGTGTACACACAAAGGGTACAAAT
*
2171567 CCTTTTCAAGTATACACACAAAGTGTACAAAT
65 CCTTTTCAAGTATACACACAAAGTCTACAAAT
* * * * *
2171599 CCTTTTCAAGTGTACATAAAAAGTGTACGTTTCCTCTCCAAGTGTACACACAAAGTGTACAAATC
1 CCTTTTCAAGTGTACACAAAAAGTGTACATTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
* *
2171664 CTTTTCAATTGTACACACAAAGTCTACAAAT
66 CTTTTCAAGTATACACACAAAGTCTACAAAT
* * **
2171695 CCTTTTCAAGTGTACACACAAAGTCTACAAATCCTTTTCAAGTGT
1 CCTTTTCAAGTGTACACAAAAAGTGTACATTTCCTTTTCAAGTGT
2171740 CACCCTTTCA
Statistics
Matches: 118, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
96 108 0.92
97 10 0.08
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.32
Consensus pattern (96 bp):
CCTTTTCAAGTGTACACAAAAAGTGTACATTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
CTTTTCAAGTATACACACAAAGTCTACAAAT
Found at i:2178275 original size:30 final size:30
Alignment explanation
Indices: 2178231--2178287 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
2178221 ATGGCCATGA
* *
2178231 CACACGGGCATGTGGTCTGCCCGTGTGCCT
1 CACACAGGCATGTGGTCTACCCGTGTGCCT
* *
2178261 CACACAGGCGTGTGGTTTACCCGTGTG
1 CACACAGGCATGTGGTCTACCCGTGTG
2178288 GACGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.12, C:0.30, G:0.33, T:0.25
Consensus pattern (30 bp):
CACACAGGCATGTGGTCTACCCGTGTGCCT
Found at i:2179096 original size:4 final size:4
Alignment explanation
Indices: 2179087--2179129 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
2179077 TTACTACCAA
*
2179087 TATG TATG TATG TATG TATG TATA TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
2179130 TTTTTTAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:2180150 original size:6 final size:6
Alignment explanation
Indices: 2180120--2180169 Score: 55
Period size: 6 Copynumber: 7.8 Consensus size: 6
2180110 CTTCAAAAAT
* *
2180120 AAATAA AAGACAA TAAATAA TAATAA AAATAAA AAATAA AAATAA AAATA
1 AAATAA AA-ATAA -AAATAA AAATAA AAAT-AA AAATAA AAATAA AAATA
2180170 TAAGGGACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 23 0.62
7 12 0.32
8 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:2180159 original size:13 final size:13
Alignment explanation
Indices: 2180141--2180172 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
2180131 AATAAATAAT
2180141 AATAAAAATAAAA
1 AATAAAAATAAAA
2180154 AATAAAAATAAAA
1 AATAAAAATAAAA
2180167 ATATAA
1 A-ATAA
2180173 GGGACTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:2190795 original size:31 final size:31
Alignment explanation
Indices: 2190757--2190858 Score: 159
Period size: 31 Copynumber: 3.3 Consensus size: 31
2190747 GAACAGTACC
*
2190757 ACACACGCCTGTGTGGTAAGGCCGTGTGATT
1 ACACACGCCTGTGTGGTCAGGCCGTGTGATT
*
2190788 ACACACGCCTGTATGGTCAGGCCGTGTGATT
1 ACACACGCCTGTGTGGTCAGGCCGTGTGATT
* *
2190819 ACACACGCCCGTGTGGTCAGGCCGTCTGATT
1 ACACACGCCTGTGTGGTCAGGCCGTGTGATT
*
2190850 ACAAACGCC
1 ACACACGCC
2190859 CATGTGACTT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (31 bp):
ACACACGCCTGTGTGGTCAGGCCGTGTGATT
Found at i:2191260 original size:34 final size:34
Alignment explanation
Indices: 2191222--2191291 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
2191212 CCTATTTCTC
2191222 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
2191256 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
2191290 AC
1 AC
2191292 ATGTATATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.36, C:0.30, G:0.03, T:0.31
Consensus pattern (34 bp):
ACCCAACTTTAACCATTTTCCTACATGAAAACTT
Found at i:2192014 original size:32 final size:32
Alignment explanation
Indices: 2191955--2192198 Score: 308
Period size: 32 Copynumber: 7.6 Consensus size: 32
2191945 CCCGAGGTGC
* *
2191955 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
2191988 ACATTTCCTTTTCAAGTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2192020 ACATTTCCTTTTCAAGTGTACACATAAAGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2192052 ACAAATCCTTTTCAAGTGTACATAGAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
2192084 ACGTTTCCTTTTCAAATGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2192116 ACAAATCCTTTTCAAGTGTACACACAAAGTTT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2192148 ACAAATCCTTTCCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2192180 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2192199 CACCCTTTCG
Statistics
Matches: 183, Mismatches: 28, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
32 168 0.92
33 15 0.08
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2192091 original size:96 final size:96
Alignment explanation
Indices: 2191961--2192198 Score: 350
Period size: 96 Copynumber: 2.5 Consensus size: 96
2191951 GTGCACATTC
* * * **
2191961 CCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTACACACAAGGGGTACATTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAAT
*
2192026 CCTTTTCAAGTGTACACATAAAGGGTACAAAT
65 CCTTTTCAAGTGTACACACAAAGGGTACAAAT
* * * *
2192058 CCTTTTCAAGTGTACATAGAAAGTGTACGTTTCCTTTTCAAATGTACACACAAAGTGTACAAATC
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
**
2192123 CTTTTCAAGTGTACACACAAAGTTTACAAAT
66 CTTTTCAAGTGTACACACAAAGGGTACAAAT
*
2192154 CCTTTCCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2192199 CACCCTTTCG
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
96 115 0.92
97 10 0.08
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (96 bp):
CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
CTTTTCAAGTGTACACACAAAGGGTACAAAT
Found at i:2197962 original size:13 final size:14
Alignment explanation
Indices: 2197939--2197967 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
2197929 TGACGAGGCT
2197939 CTTTCGCTCCTTTG
1 CTTTCGCTCCTTTG
2197953 CTTT-GCTCCTTTG
1 CTTTCGCTCCTTTG
2197966 CT
1 CT
2197968 GATGGCTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.00, C:0.34, G:0.14, T:0.52
Consensus pattern (14 bp):
CTTTCGCTCCTTTG
Found at i:2202124 original size:20 final size:20
Alignment explanation
Indices: 2202096--2202133 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2202086 AAAGGTGCTA
2202096 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
2202116 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
2202134 TATATGTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:2202231 original size:73 final size:73
Alignment explanation
Indices: 2202151--2202362 Score: 205
Period size: 72 Copynumber: 2.9 Consensus size: 73
2202141 GATACATGTA
* * *
2202151 ATGTGGGTCCGTGTGCTGACTTTGTGATCAGGCCCGTGAGTAGCTCGTTGAGCGAGCATTTCATG
1 ATGTGGGTCCGGGTGCTGACTTTGTGATCAGGCCCGTGAGTAGCTCGATGAGCGAGCATTACATG
*
2202216 TTAATGAT
66 ATAATGAT
* ** * * * * * * *
2202224 ATGTGGGTCTGGGAACTAACATCGTAAT-AGGCTCTTGAGTAGCTTGATGAGCGAGCATTACATG
1 ATGTGGGTCCGGGTGCTGACTTTGTGATCAGGCCCGTGAGTAGCTCGATGAGCGAGCATTACATG
*
2202288 ATAATGCT
66 ATAATGAT
* * * * * *
2202296 ATGTGGGTTCGGGTGTTGACTTTGTGAACAGGCCTGTGAGTAGCTC-A-AATGCAAGCATTACAT
1 ATGTGGGTCCGGGTGCTGACTTTGTGATCAGGCCCGTGAGTAGCTCGATGA-GCGAGCATTACAT
2202359 GATA
65 GATA
2202363 TGAGGTAGCT
Statistics
Matches: 106, Mismatches: 31, Indels: 5
0.75 0.22 0.04
Matches are distributed among these distances:
71 1 0.01
72 72 0.68
73 33 0.31
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.31
Consensus pattern (73 bp):
ATGTGGGTCCGGGTGCTGACTTTGTGATCAGGCCCGTGAGTAGCTCGATGAGCGAGCATTACATG
ATAATGAT
Found at i:2210062 original size:20 final size:19
Alignment explanation
Indices: 2210016--2210062 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
2210006 GTAATTCATG
2210016 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
2210035 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
2210056 TTTAATT
1 TTTAATT
2210063 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:2214430 original size:40 final size:40
Alignment explanation
Indices: 2214386--2214546 Score: 232
Period size: 40 Copynumber: 4.0 Consensus size: 40
2214376 AGAATTGAGA
* * *
2214386 GTTATATCCGAGCTAAGTCCCGAAGAGCATTCGTGTTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
2214426 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
2214466 GTTACATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * * *
2214506 GTTACATCCGGGCTAAGTCCTGAAGGGCATTCATGCCGGT
1 GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
2214546 G
1 G
2214547 ATGTGTAATC
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
GTTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:2214792 original size:25 final size:25
Alignment explanation
Indices: 2214753--2214807 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
2214743 TGTGAAATAA
2214753 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
2214778 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
2214803 CGAAT
1 CGAAT
2214808 TCTTTAACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:2214830 original size:28 final size:28
Alignment explanation
Indices: 2214791--2214886 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
2214781 ATGAATTGAG
*
2214791 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
* ** * ** *
2214819 GCACTATGTGTGTGAGA-TCGGTCAGTGG
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
2214847 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
2214875 GCACTATGTGTG
1 GCACTATGTGTG
2214887 TGAGATCGGT
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
27 1 0.02
28 47 0.96
29 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:2214857 original size:56 final size:56
Alignment explanation
Indices: 2214790--2214913 Score: 248
Period size: 56 Copynumber: 2.2 Consensus size: 56
2214780 AATGAATTGA
2214790 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGTGAGATCGGTCAGTG
1 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGTGAGATCGGTCAGTG
2214846 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGTGAGATCGGTCAGTG
1 GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGTGAGATCGGTCAGTG
2214902 GGCACTGTGTGT
1 GGCACTGTGTGT
2214914 ACGGATTTTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.31
Consensus pattern (56 bp):
GGCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGTGAGATCGGTCAGTG
Found at i:2214906 original size:28 final size:28
Alignment explanation
Indices: 2214819--2214913 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
2214809 CTTTAACCGA
2214819 GCACTATGTGTGTGAGATCGGTCAGTGG
1 GCACTATGTGTGTGAGATCGGTCAGTGG
* * ** * ** *
2214847 GCACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGTGAGA-TCGGTCAGTGG
2214875 GCACTATGTGTGTGAGATCGGTCAGTGG
1 GCACTATGTGTGTGAGATCGGTCAGTGG
*
2214903 GCACTGTGTGT
1 GCACTATGTGT
2214914 ACGGATTTTG
Statistics
Matches: 48, Mismatches: 17, Indels: 4
0.70 0.25 0.06
Matches are distributed among these distances:
27 1 0.02
28 46 0.96
29 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGTGAGATCGGTCAGTGG
Found at i:2216035 original size:20 final size:19
Alignment explanation
Indices: 2215989--2216035 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
2215979 GTAATTCATG
2215989 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
2216008 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
2216029 TTTAATT
1 TTTAATT
2216036 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:2225278 original size:32 final size:32
Alignment explanation
Indices: 2225176--2225377 Score: 257
Period size: 32 Copynumber: 6.4 Consensus size: 32
2225166 GTGCACATTC
* *
2225176 CCTTTTCAAATG-A-ACACCAAGTGTAC-ATT
1 CCTTTTCAAGTGTACACACAAAGTGTACAATT
* * *
2225205 CCTTTTCAAGTGTACACACAAGGGGTACATTT
1 CCTTTTCAAGTGTACACACAAAGTGTACAATT
*
2225237 CCTTTTCAAGTGTACACACAAAGTGTACAAAT
1 CCTTTTCAAGTGTACACACAAAGTGTACAATT
* **
2225269 CCTTTTCAAGTGTACATACAAAGTGTACGTTT
1 CCTTTTCAAGTGTACACACAAAGTGTACAATT
** *
2225301 CCTTTTCAAGTGTACACACAAAGACTACAAAT
1 CCTTTTCAAGTGTACACACAAAGTGTACAATT
**
2225333 CCTTTTCAAGTGTACACACAAAGTGTACGTTT
1 CCTTTTCAAGTGTACACACAAAGTGTACAATT
2225365 CCTTTTCAAGTGT
1 CCTTTTCAAGTGT
2225378 CACCCTTTCG
Statistics
Matches: 146, Mismatches: 24, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
29 11 0.08
30 1 0.01
31 10 0.07
32 124 0.85
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGTACAATT
Found at i:2225281 original size:64 final size:64
Alignment explanation
Indices: 2225170--2225377 Score: 296
Period size: 64 Copynumber: 3.3 Consensus size: 64
2225160 CCTGAGGTGC
* * * * * *
2225170 ACATTCCCTTTTCAAATG-A-ACACCAAGTGTAC-ATTCCTTTTCAAGTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACACACAAAGTGT
*
2225231 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACACACAAAGTGT
* **
2225295 ACGTTTCCTTTTCAAGTGTACACACAAAGACTACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACACACAAAGTGT
*
2225359 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2225378 CACCCTTTCG
Statistics
Matches: 133, Mismatches: 11, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
61 16 0.12
62 1 0.01
63 12 0.09
64 104 0.78
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (64 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2226310 original size:32 final size:32
Alignment explanation
Indices: 2226251--2226493 Score: 308
Period size: 32 Copynumber: 7.6 Consensus size: 32
2226241 CCCGAGGTGC
* *
2226251 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* * *
2226284 ACATTTCCTTTTCAATTGTACACACAAGGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2226316 ACATTTCCCTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2226348 ACAAATCCTTTTCAAGTGTATATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2226380 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2226412 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2226444 A-AAATCCTTTTCAAGTATGCACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2226475 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2226494 CACCATTTCA
Statistics
Matches: 182, Mismatches: 27, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
31 29 0.16
32 138 0.76
33 15 0.08
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2226392 original size:96 final size:95
Alignment explanation
Indices: 2226257--2226493 Score: 348
Period size: 96 Copynumber: 2.5 Consensus size: 95
2226247 GTGCACATTC
* * * * **
2226257 CCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAATTGTACACACAAGGGGTACATTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAAT
2226322 CCCTTTCAAGTGTACACACAAAGTGTACAAAT
65 CCCTTTCAAGTGTACACACAAAGTGTA-AAAT
* * *
2226354 CCTTTTCAAGTGTATATACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATC
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
*
2226419 CTTTTCAAGTGTACACACAAAGTGTAAAAT
66 CCTTTCAAGTGTACACACAAAGTGTAAAAT
* *
2226449 CCTTTTCAAGTATGCACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2226494 CACCATTTCA
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
95 45 0.36
96 71 0.56
97 10 0.08
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (95 bp):
CCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGGGTACAAATC
CCTTTCAAGTGTACACACAAAGTGTAAAAT
Found at i:2236963 original size:4 final size:4
Alignment explanation
Indices: 2236954--2237144 Score: 382
Period size: 4 Copynumber: 47.8 Consensus size: 4
2236944 TTACTACCAA
2236954 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
2237002 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
2237050 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
2237098 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
2237145 TTTAAGAACA
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 187 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:2238151 original size:7 final size:6
Alignment explanation
Indices: 2238130--2238183 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
2238120 AGTCTTCAAA
* *
2238130 AAAAAT AAGAGAT AATAAAT AATAA- AAAAAT AAAATAT AAAAAT AAAAAT
1 AAAAAT AA-AAAT AA-AAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT
2238180 AAAA
1 AAAA
2238184 GGGACTCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 4 0.10
6 20 0.50
7 16 0.40
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:2238171 original size:13 final size:13
Alignment explanation
Indices: 2238150--2238183 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
2238140 GATAATAAAT
*
2238150 AATAAAAAAATAA
1 AATATAAAAATAA
2238163 AATATAAAAATAA
1 AATATAAAAATAA
2238176 AA-ATAAAA
1 AATATAAAA
2238184 GGGACTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
AATATAAAAATAA
Found at i:2238183 original size:25 final size:25
Alignment explanation
Indices: 2238127--2238183 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
2238117 ATAAGTCTTC
*
2238127 AAAAAAAATAAGAGATAATAAATAA
1 AAAAAAAATAAAAGATAATAAATAA
* *
2238152 TAAAAAAATAAAATATAA-AAATAA
1 AAAAAAAATAAAAGATAATAAATAA
*
2238176 AAATAAAA
1 AAAAAAAA
2238184 GGGACTCAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.18
Consensus pattern (25 bp):
AAAAAAAATAAAAGATAATAAATAA
Found at i:2245145 original size:72 final size:73
Alignment explanation
Indices: 2245003--2245189 Score: 189
Period size: 72 Copynumber: 2.6 Consensus size: 73
2244993 GATACATGTA
* * * * * * *
2245003 ATGTGGGTCCGGGTGCTAACTTTGTGATTAGGCCCGTGAGTAACTCGTTGAACGAGCATTTCATG
1 ATGTGGGTTCGGGTACTAACTTCGTGATCAGGACCGTGAGTAACTCGATGAACGAGCATTACATG
*
2245068 TTAATGCT
66 ATAATGCT
* * * *
2245076 ATGTGGGTTCGGGTATTAACTTCGTGA-CAGGACCTTGAGTAGCTCGATGAGCGAGCATTACATG
1 ATGTGGGTTCGGGTACTAACTTCGTGATCAGGACCGTGAGTAACTCGATGAACGAGCATTACATG
2245140 ATAATGCT
66 ATAATGCT
* * * * * *
2245148 ATGTCGG-TCGGGGTGCTAACTTTGTGAACAAGCCCGTGAGTA
1 ATGTGGGTTC-GGGTACTAACTTCGTGATCAGGACCGTGAGTA
2245190 GCTTAAATGC
Statistics
Matches: 93, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
71 2 0.02
72 57 0.61
73 34 0.37
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (73 bp):
ATGTGGGTTCGGGTACTAACTTCGTGATCAGGACCGTGAGTAACTCGATGAACGAGCATTACATG
ATAATGCT
Found at i:2252852 original size:21 final size:20
Alignment explanation
Indices: 2252818--2252858 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2252808 TGGAACAGGG
* *
2252818 TTACAAAATATTACCGATCA
1 TTACAAAAAATTACAGATCA
2252838 TTACAAAAAATTTACAGATCA
1 TTACAAAAAA-TTACAGATCA
2252859 AACATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (20 bp):
TTACAAAAAATTACAGATCA
Found at i:2253061 original size:31 final size:31
Alignment explanation
Indices: 2253019--2253091 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
2253009 AGTACCACAT
* *
2253019 ACGCCCGTGTGGCCAGGCCGAGTGATTACAC
1 ACGCCCATGTGGCCAGGCAGAGTGATTACAC
* *
2253050 ACGCCCATGTGGTCAGGCAGTGTGATTACAC
1 ACGCCCATGTGGCCAGGCAGAGTGATTACAC
*
2253081 ACGCCCTTGTG
1 ACGCCCATGTG
2253092 ACTTGGGACA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (31 bp):
ACGCCCATGTGGCCAGGCAGAGTGATTACAC
Found at i:2254184 original size:32 final size:32
Alignment explanation
Indices: 2254117--2254360 Score: 303
Period size: 32 Copynumber: 7.6 Consensus size: 32
2254107 CCCGAGGTGC
*
2254117 ACATTCCCTTTTCAAAAG-GTACACACAAAGTGT
1 ACATTTCCTTTTC--AAGTGTACACACAAAGTGT
*
2254150 ACATTTCCTTTTCAAGTGTGCACACAAAAG-GT
1 ACATTTCCTTTTCAAGTGTACACAC-AAAGTGT
*
2254182 ACATTTCCTTTTCAAGTGCACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
2254214 ACAAATCCTTTTCAAGTGTACATACAAAGTGA
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2254246 ATGTTTCCTTTCCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** *
2254278 ACAAATCCTTTTCAAGTGTACACACAAAGTCT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
**
2254310 ACAAATCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
2254342 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
2254361 CACCCTTTCA
Statistics
Matches: 182, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
31 7 0.04
32 159 0.87
33 16 0.09
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:2254253 original size:96 final size:96
Alignment explanation
Indices: 2254135--2254360 Score: 346
Period size: 96 Copynumber: 2.4 Consensus size: 96
2254125 TTTTCAAAAG
* * **
2254135 GTACACACAAAGTGTACATTTCCTTTTCAAGTGTGCACACAAAAG-GTACATTTCCTTTTCAAGT
1 GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACAC-AAAGTGTACAAATCCTTTTCAAGT
*
2254199 GCACACACAAAGTGTACAAATCCTTTTCAAGT
65 GCACACACAAAGTCTACAAATCCTTTTCAAGT
* * * *
2254231 GTACATACAAAGTGAATGTTTCCTTTCCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTG
1 GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTG
*
2254296 TACACACAAAGTCTACAAATCCTTTTCAAGT
66 CACACACAAAGTCTACAAATCCTTTTCAAGT
2254327 GTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 GTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
2254361 CACCCTTTCA
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
95 4 0.03
96 111 0.97
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (96 bp):
GTACACACAAAGTGTACGTTTCCTTTTCAAGTGTACACACAAAGTGTACAAATCCTTTTCAAGTG
CACACACAAAGTCTACAAATCCTTTTCAAGT
Found at i:2264818 original size:23 final size:24
Alignment explanation
Indices: 2264773--2264818 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2264763 GGATCTAGGT
2264773 TTAGTAGGGTTTGGGGTTATTGGC
1 TTAGTAGGGTTTGGGGTTATTGGC
2264797 TTAGT-GGGTTTAGGGGTT-TTGG
1 TTAGTAGGGTTT-GGGGTTATTGG
2264819 GCCCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.11, C:0.02, G:0.43, T:0.43
Consensus pattern (24 bp):
TTAGTAGGGTTTGGGGTTATTGGC
Found at i:2265179 original size:42 final size:42
Alignment explanation
Indices: 2265068--2265195 Score: 195
Period size: 42 Copynumber: 3.1 Consensus size: 42
2265058 AGACATGTGA
* * * *
2265068 CTTCAATCAATTCCACTAAAACTTCAAGGAGATTTACTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
*
2265110 CTTCGATTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
*
2265151 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGG
1 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
2265193 CTT
1 CTT
2265196 TTAGCTGCTC
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 37 0.47
42 41 0.53
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAG
Found at i:2265805 original size:43 final size:44
Alignment explanation
Indices: 2265719--2265813 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
2265709 CTGTACATTT
* * *
2265719 AGTCTGCTCCACTGTGACTTCAAGGAGATGAGACTTGTAACTTC
1 AGTCTGCTCCACTGTCACTTCAAGGAGATAAGACTAGTAACTTC
* *
2265763 AGTCTGCTCCACTG-CACTTCAGGGAGATAA-AGCTAGTGACTTC
1 AGTCTGCTCCACTGTCACTTCAAGGAGATAAGA-CTAGTAACTTC
*
2265806 AATCTGCT
1 AGTCTGCT
2265814 TCGCTGAGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.02
43 29 0.66
44 14 0.32
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (44 bp):
AGTCTGCTCCACTGTCACTTCAAGGAGATAAGACTAGTAACTTC
Found at i:2278397 original size:3 final size:3
Alignment explanation
Indices: 2278386--2278616 Score: 53
Period size: 3 Copynumber: 74.7 Consensus size: 3
2278376 AAAAAAGAAG
* * * * * *
2278386 TAA TGA TAA TAA TAA TAG GAG TAA TAA TAA TAA T-A TAA TGA TGA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * *
2278434 CAA TAA TAA -AA GGAA CAA -AA CTAA TAG TAA TAA TAA -AGA TATT TAA
1 TAA TAA TAA TAA -TAA TAA TAA -TAA TAA TAA TAA TAA TA-A TA-A TAA
* ** * *
2278480 TAA TAG TAA TAA TAA CGA TGA T-A TAAA TAA TAA TATA TACA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A TAA TAA
* * * * *
2278527 TAA TATT TAGA -AA TAA AAA TAA TGGAA GTAG TAA TAA CAA TAG TAA
1 TAA TA-A TA-A TAA TAA TAA TAA T--AA -TAA TAA TAA TAA TAA TAA
* * * * *
2278573 TAG TAA TAA -AGA TAA CAG CAA GAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2278617 TATTTAATTC
Statistics
Matches: 168, Mismatches: 42, Indels: 36
0.68 0.17 0.15
Matches are distributed among these distances:
2 11 0.07
3 134 0.80
4 20 0.12
5 2 0.01
6 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:2299533 original size:31 final size:29
Alignment explanation
Indices: 2299476--2299534 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
2299466 TTGGTTACAT
* *
2299476 ATATTTCAATTATTATAATTTAATCATTA
1 ATATTTCAATTATAACAATTTAATCATTA
*
2299505 ATATTATCAATTTATAACAATTTGATCATT
1 ATATT-TCAA-TTATAACAATTTAATCATT
2299535 GTGCATTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.20
30 4 0.16
31 16 0.64
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (29 bp):
ATATTTCAATTATAACAATTTAATCATTA
Found at i:2299776 original size:21 final size:22
Alignment explanation
Indices: 2299739--2299780 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
2299729 CCTTGAACTC
*
2299739 AAACCTCAAACCTTAAACATCG
1 AAACCTCAAACCATAAACATCG
2299761 AAACCT-AAACCATAAACATC
1 AAACCTCAAACCATAAACATC
2299781 AAATCCAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.50, C:0.31, G:0.02, T:0.17
Consensus pattern (22 bp):
AAACCTCAAACCATAAACATCG
Found at i:2299819 original size:28 final size:28
Alignment explanation
Indices: 2299746--2299819 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
2299736 CTCAAACCTC
* * *
2299746 AAACCTTAAACATCGAAACCTAAACCAT
1 AAACCTCAAATATCGAACCCTAAACCAT
* * *
2299774 AAACATCAAAT-CCAGAACCCTAAACCTT
1 AAACCTCAAATATC-GAACCCTAAACCAT
*
2299802 TAACCTCAAATATCGAAC
1 AAACCTCAAATATCGAAC
2299820 ACGAACCCTA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.03
28 33 0.94
29 1 0.03
ACGTcount: A:0.47, C:0.30, G:0.04, T:0.19
Consensus pattern (28 bp):
AAACCTCAAATATCGAACCCTAAACCAT
Found at i:2299881 original size:13 final size:13
Alignment explanation
Indices: 2299846--2299889 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
2299836 TCGAACCTTG
*
2299846 AACCTAGAACCTAA
1 AACCTTGAACCT-A
2299860 AACCTTGAACCTA
1 AACCTTGAACCTA
*
2299873 AATCTTGAACCCTA
1 AACCTTGAA-CCTA
2299887 AAC
1 AAC
2299890 TCGAATCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.43, C:0.30, G:0.07, T:0.20
Consensus pattern (13 bp):
AACCTTGAACCTA
Found at i:2300190 original size:22 final size:24
Alignment explanation
Indices: 2300142--2300190 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
2300132 TTAATGATCA
* *
2300142 AATCGTAATAATTGAAACATCAGT
1 AATCGTAATAATTGAAACAACAAT
*
2300166 AATCGT-A-AATTTAAACAACAAT
1 AATCGTAATAATTGAAACAACAAT
2300188 AAT
1 AAT
2300191 GGACTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 15 0.68
23 1 0.05
24 6 0.27
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (24 bp):
AATCGTAATAATTGAAACAACAAT
Found at i:2301098 original size:228 final size:222
Alignment explanation
Indices: 2300644--2302886 Score: 2444
Period size: 228 Copynumber: 10.0 Consensus size: 222
2300634 ATGTAGCCGC
* * * ** *
2300644 GGAGGTGGATGTTGTAGCTGAGAAAGACAATGAAAAGAGATATCTTCTCAACAGCGCCAA-AGTG
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACA-CG
* *
2300708 AGTTGCGCTAAGGTTGGCTCCGG-ATGCTCGGATGTTGATGTTAATGGAAACGACTCCGTTAATG
65 AGTTGCGTTAAGGTTGGCTCCGGCA-GCACGGATGTTGATGTTAATGGAAACGACTCCGTTAATG
* * *
2300772 GAGTTGTAGTGGAACCGGATGGCAATTGCGTTGTCGAAGAAGAACACGAAGTGAAATCCGAATCA
129 GAGTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGAATCA
* * *
2300837 GATTCGGTTACTATTACTATGCATCAGCA
194 GATTCGGTTACTATGACTATGAATCAACA
* * *
2300866 GGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGAGATATCTTGTCAATGGCGCCAACACGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * * *
2300931 GTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTATGTTAACGTAAATGGAAGCGACTCTGTT
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATG-T----T-AATGGAAACGACTCCGTT
* * * **
2300996 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAAAAGACCACGAAGTGAAATTGGA
125 AATGGAGTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGA
*
2301061 ATCTGATTCGGTTACTATGACTATGAATCAACA
190 ATCAGATTCGGTTACTATGACTATGAATCAACA
*
2301094 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACGCGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * * *
2301159 GTTGCGTTAAGGTCGGCTTCGGCAG--C-----TT--TG---ATGGAAGCGACTCTGTTAATGGA
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATGTTAATGGAAACGACTCCGTTAATGGA
* * * * * * *
2301212 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGAATCAGA
* * * *
2301277 TTCAGTTACTATTACTATGCATCAGCA
196 TTCGGTTACTATGACTATGAATCAACA
* * * * *
2301304 GGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGAGTTATCTGCTCAATGGCGCCAACACTA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * *
2301369 GTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTATGTTAACGTAAATGGAAGCGACTCCGTT
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATG-T----T-AATGGAAACGACTCCGTT
* * * *
2301434 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCCGA
125 AATGGAGTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGA
* *
2301499 ATCTGATTCGGTTACTATTACTATGAATCAACA
190 ATCAGATTCGGTTACTATGACTATGAATCAACA
* * * *
2301532 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGCTATCTTGTCAATGGCGCGAACGCGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * *** * * * * *
2301597 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGTAAGCGACTCTGTTAATGGA
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATGTTAATGGAAACGACTCCGTTAATGGA
* * * * * *
2301662 GTTGTAGTGGAATCGGATGACAATTACATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGAATCAGA
* * * ** *
2301727 TTCGATTACTATTACTAGGCGTCAGCA
196 TTCGGTTACTATGACTATGAATCAACA
* * * * *
2301754 GGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGAGTTATCTGCTCAATGGCGCCAACACTA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * *
2301819 GTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTATGTTAACGTAAATGGAAGCGACTCCGTT
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATG-T----T-AATGGAAACGACTCCGTT
* * * *
2301884 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCCGA
125 AATGGAGTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGA
* *
2301949 ATCTGATTCGGTTACTATTACTATGAATCAACA
190 ATCAGATTCGGTTACTATGACTATGAATCAACA
* * * *
2301982 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGCTATCTTGTCAATGGCGCGAACGCGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * *** * * * * *
2302047 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGTTAACGTAAGCGACTCTGTTAATGGA
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATGTTAATGGAAACGACTCCGTTAATGGA
* * * * * *
2302112 GTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGATGACCACGAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGAATCAGA
* * * ** *
2302177 TTCGATTACTATTACTAGGCGTCAGCA
196 TTCGGTTACTATGACTATGAATCAACA
* * * *
2302204 GGAGGTGGGTATTGAAGCTGAGAAAGAGAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * * *
2302269 GTAGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTTATGTTAACGTAAATGGAAGCGACTCTGTT
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATG-T----T-AATGGAAACGACTCCGTT
* * * *
2302334 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCCGA
125 AATGGAGTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGA
* *
2302399 ATCTGATTCGGTTACTATTACTATGAATCAACA
190 ATCAGATTCGGTTACTATGACTATGAATCAACA
* * * **
2302432 AGAGGTGGATATTGTAGCTGAGAAAGAGAAAGAAACGAGCTATCTTCTCAATGGCGCCAACGTGA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * *** * * * * *
2302497 GTTGCCTTAAGGTTGGCTTCGGCAGCTTTGATGTTTATGCTAACGGAAGCGACTCTGTTAATGGA
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATGTTAATGGAAACGACTCCGTTAATGGA
* * * * * * * *
2302562 GTTGTAGTGGAATCGGGTGACAATTACATTGTCGAAGATGACCACAAAGTGAAATCCGAATCTGA
131 GTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGAATCAGA
* * * *
2302627 TTCAGTTACTATTACTATGCATCAGCA
196 TTCGGTTACTATGACTATGAATCAACA
* * * * *
2302654 GGAGGTGGGTATTGAAGCTGAGAAAGAAAATGAAACGAGTTATCTTCTCAATGGCGCCAACACTA
1 GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
* * * * *
2302719 GTAGCGTTAAGGTTGGCTCCAGCAGCATGGATGTTTATGTTAATGTAAATGGAAGCGACTCCGTT
66 GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATG--T-TG---ATGTTAATGGAAACGACTCCGTT
* * * * *
2302784 AATGGAGTTGTAGTGGAATCGGGTGACAATTGCATTGTCGAAGAAGACCACGAAGTGAAATCAGA
125 AATGGAGTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGA
* * * * *
2302849 ATCTGATTCAGTTACTATTAGTATGAATCAGCA
190 ATCAGATTCGGTTACTATGACTATGAATCAACA
2302882 GGAGG
1 GGAGG
2302887 GGGAGAAACC
Statistics
Matches: 1777, Mismatches: 200, Indels: 82
0.86 0.10 0.04
Matches are distributed among these distances:
210 187 0.11
212 1 0.00
217 2 0.00
219 4 0.00
221 2 0.00
222 672 0.38
223 8 0.00
224 1 0.00
225 1 0.00
226 1 0.00
227 5 0.00
228 893 0.50
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (222 bp):
GGAGGTGGATATTGTAGCTGAGAAAGAGAATGAAACGAGATATCTTCTCAATGGCGCCAACACGA
GTTGCGTTAAGGTTGGCTCCGGCAGCACGGATGTTGATGTTAATGGAAACGACTCCGTTAATGGA
GTTGTAGTGGAACCGGATGACAATTGCATTGTCGAAAAAGAACACGAAGTGAAATCCGAATCAGA
TTCGGTTACTATGACTATGAATCAACA
Done.