Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 71 of 253
Found at i:20831512 original size:27 final size:26
Alignment explanation
Indices: 20831482--20831605 Score: 180
Period size: 26 Copynumber: 4.8 Consensus size: 26
20831472 GAGGAAGTGC
*
20831482 AAAAGGGTTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
20831508 AAAAATGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
20831535 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
20831561 AAAAGGG-TTTTGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
20831586 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
20831606 ATTAAAGAGG
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
25 33 0.36
26 34 0.37
27 24 0.26
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:20831580 original size:25 final size:25
Alignment explanation
Indices: 20831482--20831605 Score: 158
Period size: 25 Copynumber: 4.8 Consensus size: 25
20831472 GAGGAAGTGC
20831482 AAAAGGGTTTATGCCCCAGTTTATTG
1 AAAAGGGTTT-TGCCCCAGTTTATTG
* *
20831508 AAAAATGGCTTATGCCCCAGTTTATTG
1 -AAAA-GGGTTTTGCCCCAGTTTATTG
* *
20831535 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAA-GGGTTTTGCCCCAGTTTATTG
*
20831561 AAAAGGGTTTTGCCCCAGTTTATCG
1 AAAAGGGTTTTGCCCCAGTTTATTG
*
20831586 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGTTTTGCCCCAGTT
20831606 ATTAAAGAGG
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
25 37 0.41
26 30 0.33
27 19 0.21
28 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
AAAAGGGTTTTGCCCCAGTTTATTG
Found at i:20832453 original size:13 final size:13
Alignment explanation
Indices: 20832435--20832464 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
20832425 GTCAAATAAA
20832435 ACATTTGGCAATC
1 ACATTTGGCAATC
20832448 ACATTTGGCAATC
1 ACATTTGGCAATC
20832461 ACAT
1 ACAT
20832465 ATCATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (13 bp):
ACATTTGGCAATC
Found at i:20834926 original size:28 final size:28
Alignment explanation
Indices: 20834893--20834975 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
20834883 CCACTGACCG
20834893 ATCTCGCACACATAGTGCTCGGTTGAAGA
1 ATCTCGCACACATAGTGCTCGGTT-AAGA
* ** **
20834922 A-CTCGCACACACAGTGCCTCAATTACTA
1 ATCTCGCACACATAGTG-CTCGGTTAAGA
20834950 ATCTCGCACACATAGTGCTCGGTTAA
1 ATCTCGCACACATAGTGCTCGGTTAA
20834976 CGAAATTTGC
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
28 23 0.53
29 20 0.47
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGGTTAAGA
Found at i:20835219 original size:43 final size:43
Alignment explanation
Indices: 20835165--20835374 Score: 384
Period size: 43 Copynumber: 4.9 Consensus size: 43
20835155 CACCGGTATT
* *
20835165 AAGCCTTCTAGGCACGAAGACCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
*
20835208 AAGCCTGCTAGGCACGAAAGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
20835251 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
20835294 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
*
20835337 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCG
20835375 AGTTTCATGC
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 162 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
Found at i:20838613 original size:47 final size:47
Alignment explanation
Indices: 20838559--20838909 Score: 568
Period size: 47 Copynumber: 7.6 Consensus size: 47
20838549 ATATTTAATA
*
20838559 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
20838606 AATGTGAAAGTG--TAT-TGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
20838650 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
20838697 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
20838744 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
20838791 AATGTAAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
20838837 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
20838884 GATGTG-AAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
20838910 TCCCGAAGGG
Statistics
Matches: 288, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
44 40 0.14
45 3 0.01
46 64 0.22
47 181 0.63
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:20840737 original size:40 final size:40
Alignment explanation
Indices: 20840296--20840725 Score: 684
Period size: 40 Copynumber: 10.8 Consensus size: 40
20840286 GAGAATTGAG
20840296 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
20840335 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
20840375 AGTGATGTATCCGTGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
20840415 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
20840455 ATTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
20840495 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
20840535 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
20840575 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
20840615 AGTGATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
20840654 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCTTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
20840694 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
20840726 ATCATGCTGG
Statistics
Matches: 364, Mismatches: 25, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 58 0.16
40 306 0.84
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:20844852 original size:47 final size:47
Alignment explanation
Indices: 20844798--20845199 Score: 662
Period size: 47 Copynumber: 8.6 Consensus size: 47
20844788 TATTTGAATA
* *
20844798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
20844845 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
20844892 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
20844938 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
20844985 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
20845032 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
20845079 AATGTGAAAGTGTATATATATGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * *
20845126 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
20845173 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
20845200 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.14
47 293 0.86
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:20844977 original size:140 final size:141
Alignment explanation
Indices: 20844798--20845199 Score: 689
Period size: 140 Copynumber: 2.9 Consensus size: 141
20844788 TATTTGAATA
*
20844798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
20844863 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
20844928 CCGATGTG-TG
131 CCGATGTGATG
20844938 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
20845003 TGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
20845068 CCGATGTGATG
131 CCGATGTGATG
* * *
20845079 AATGTGAAAGTGTATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
20845144 TGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
20845200 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
140 133 0.53
141 116 0.47
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCGATGTGATG
Found at i:20845146 original size:25 final size:25
Alignment explanation
Indices: 20845071--20845149 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
20845061 CGAATGGCCG
20845071 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * ***
20845096 ATATGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
20845118 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
20845143 ATGTGAT
1 ATGTGAT
20845150 AGGGCCGAGT
Statistics
Matches: 37, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:20847391 original size:37 final size:37
Alignment explanation
Indices: 20847327--20847398 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
20847317 TTTAGCTCGA
* * *
20847327 ATAATCCCCACATGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCATCAGGTCTTACCCGGGC
*
20847364 ATAATCTCCACACGTAGCCATCAGGTCTTACCCGG
1 ATAATCCCCACACGTAGCCATCAGGTCTTACCCGG
20847399 AATATATTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCATCAGGTCTTACCCGGGC
Found at i:20847592 original size:48 final size:48
Alignment explanation
Indices: 20847532--20847637 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
20847522 CGACCACAAT
* *
20847532 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
20847580 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
20847628 ACATATATAT
1 ATATACATAT
20847638 ATATATTTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:20852697 original size:33 final size:33
Alignment explanation
Indices: 20852659--20852733 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
20852649 AATCCACCAT
* *
20852659 ATCACCACAATTCAACTATCTTACCACCAACAC
1 ATCACCACAATTCAACCACCTTACCACCAACAC
* *
20852692 ATCACCATC-ATTCAACCACCTTAGCACCACCAC
1 ATCACCA-CAATTCAACCACCTTACCACCAACAC
*
20852725 ACCACCACA
1 ATCACCACA
20852734 TAATAATCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 1 0.03
33 33 0.94
34 1 0.03
ACGTcount: A:0.37, C:0.44, G:0.01, T:0.17
Consensus pattern (33 bp):
ATCACCACAATTCAACCACCTTACCACCAACAC
Found at i:20885995 original size:93 final size:93
Alignment explanation
Indices: 20885888--20886058 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
20885878 GCCCCTAAGT
* *
20885888 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20885953 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
20885981 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20886046 CGAGTTCGGATGC
66 CGAGTTCGGATGC
20886059 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:20886055 original size:46 final size:46
Alignment explanation
Indices: 20885883--20886055 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
20885873 AACCCGCCCC
* * *
20885883 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
20885929 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
20885977 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
20886022 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
20886056 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:20890542 original size:46 final size:46
Alignment explanation
Indices: 20890492--20890620 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
20890482 TGGTTGAGCA
*
20890492 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
20890538 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
20890584 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20890621 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:20898027 original size:46 final size:46
Alignment explanation
Indices: 20897977--20898152 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
20897967 TGGTTGAGTA
20897977 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20898023 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
20898068 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20898116 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20898153 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20898135 original size:93 final size:93
Alignment explanation
Indices: 20897976--20898145 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
20897966 ATGGTTGAGT
* *
20897976 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
20898041 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
*
20898069 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
20898134 AGTCCGAGTTCG
66 AGTCCGAGTTCG
20898146 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:20923399 original size:14 final size:14
Alignment explanation
Indices: 20923380--20923407 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20923370 GGTTTAAGCG
20923380 GTTTCAATTCTACA
1 GTTTCAATTCTACA
20923394 GTTTCAATTCTACA
1 GTTTCAATTCTACA
20923408 ATATTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
GTTTCAATTCTACA
Found at i:20933708 original size:16 final size:18
Alignment explanation
Indices: 20933669--20933706 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
20933659 TGAAAATGTC
20933669 AAAAGGACCAATTTGTAA
1 AAAAGGACCAATTTGTAA
20933687 AAAAGG-CCAATTTGTAA
1 AAAAGGACCAATTTGTAA
20933704 AAA
1 AAA
20933707 GGTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (18 bp):
AAAAGGACCAATTTGTAA
Found at i:20934263 original size:42 final size:41
Alignment explanation
Indices: 20934206--20934353 Score: 161
Period size: 42 Copynumber: 3.5 Consensus size: 41
20934196 ACTAAGACTA
*
20934206 TGTGTAAGACAATATCTGGGAAATGGCATCGATATGAGACTT
1 TGTGTAAGACCATATCTGGGAAATGGCATCGATATGAGA-TT
* * *
20934248 TGTGTAAGACCATATCTGGGATATGACATCGATGTGAGATT
1 TGTGTAAGACCATATCTGGGAAATGGCATCGATATGAGATT
* * * *
20934289 TCGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATT
1 T-GTGTAAGACCATATCTGGG-AAATGGCATCGATATGAGATT
** *
20934332 ACATGTAAGACCATATTTGGGA
1 -TGTGTAAGACCATATCTGGGA
20934354 TGTGGCATTG
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
41 3 0.03
42 53 0.61
43 31 0.36
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (41 bp):
TGTGTAAGACCATATCTGGGAAATGGCATCGATATGAGATT
Found at i:20943411 original size:17 final size:15
Alignment explanation
Indices: 20943389--20943422 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
20943379 ATCAAAAATG
20943389 AAAGAAGGATGAGAAGA
1 AAAGAAGGA-GA-AAGA
20943406 AAAGAAGGAGAAAGA
1 AAAGAAGGAGAAAGA
20943421 AA
1 AA
20943423 CATCATGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 2 0.12
17 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (15 bp):
AAAGAAGGAGAAAGA
Found at i:20947445 original size:43 final size:43
Alignment explanation
Indices: 20947398--20947499 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
20947388 CTAAACAGGG
20947398 TCTTACACGAAATCGATC-A-ACAATGCCAATGTCCCAGACATGC
1 TCTTACACGAAATC-A-CAATACAATGCCAATGTCCCAGACATGC
* * *
20947441 TCTTACACGTAATCACAATACAATGCCAATGTTCCAGACATGG
1 TCTTACACGAAATCACAATACAATGCCAATGTCCCAGACATGC
* *
20947484 TCTTACATGTAATCAC
1 TCTTACACGAAATCAC
20947500 GACTCGATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
41 1 0.02
42 2 0.04
43 50 0.94
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (43 bp):
TCTTACACGAAATCACAATACAATGCCAATGTCCCAGACATGC
Found at i:20956413 original size:93 final size:93
Alignment explanation
Indices: 20956306--20956477 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
20956296 GCCCCTAAGT
* *
20956306 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
20956371 CAAGTTTGGATGCTTAGTTACATTTCAC
66 CAAGTTCGGATGCTTAGTTACATTTCAC
** *
20956399 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
20956464 CGAGTTCGGATGCT
66 CAAGTTCGGATGCT
20956478 CAACCATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCTTAGTTACATTTCAC
Found at i:20956473 original size:46 final size:45
Alignment explanation
Indices: 20956301--20956473 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
20956291 AACCCGCCCC
* *
20956301 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGAC-TTCGCATCCA
* * * *
20956347 TAAGTGAACTCGGACTCAACTCAACAAGTTTGGATGCTTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA--CTTCGCATCCA
* * **
20956393 TTTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACAAGTTCGGAC-TTCGCATCCA
*
20956440 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
20956474 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.03
46 65 0.63
47 32 0.31
48 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACTTCGCATCCA
Found at i:20956934 original size:30 final size:30
Alignment explanation
Indices: 20956900--20956960 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
20956890 ATTTAATACG
*
20956900 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
20956930 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
20956960 A
1 A
20956961 GCTCGGGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:20969582 original size:18 final size:18
Alignment explanation
Indices: 20969539--20969583 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
20969529 GGCCCACATT
20969539 ACAGGCCCATGTAGGCCC
1 ACAGGCCCATGTAGGCCC
* *
20969557 ACACGCCCGTGTA-GCCC
1 ACAGGCCCATGTAGGCCC
20969574 ACAAGGCCCA
1 AC-AGGCCCA
20969584 GAAATGGCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.24, C:0.42, G:0.24, T:0.09
Consensus pattern (18 bp):
ACAGGCCCATGTAGGCCC
Found at i:20976476 original size:67 final size:67
Alignment explanation
Indices: 20976361--20976506 Score: 224
Period size: 67 Copynumber: 2.2 Consensus size: 67
20976351 AAGCGTTCTT
* *
20976361 GCAGCCTCGCTGTAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACTTCGTCACAATATC
1 GCAGCCTCGCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACTTCATCACAATATC
20976426 TG
66 TG
* *
20976428 GCAGGCTCGCTGCAATCTGGTGGCCT-AGCCACA-ATATCTGTATTTGGTGACTTCATCACAATA
1 GCAGCCTCGCTGCAATCTGGTGGCCTCA-CCACATATATCTGT-TCTGGTGACTTCATCACAATA
20976491 TCTG
64 TCTG
20976495 GCAGCCTCGCTG
1 GCAGCCTCGCTG
20976507 TAATTTTTGT
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
66 9 0.12
67 63 0.88
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (67 bp):
GCAGCCTCGCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACTTCATCACAATATC
TG
Found at i:20997530 original size:17 final size:17
Alignment explanation
Indices: 20997508--20997552 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
20997498 TTTTATTCGT
20997508 GTGGGGCCCACGCCGTC
1 GTGGGGCCCACGCCGTC
*
20997525 GTGGGGCCCACGCTGTC
1 GTGGGGCCCACGCCGTC
20997542 GTGGGGCCCAC
1 GTGGGGCCCAC
20997553 ACAGCCTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.07, C:0.38, G:0.42, T:0.13
Consensus pattern (17 bp):
GTGGGGCCCACGCCGTC
Found at i:21004663 original size:12 final size:13
Alignment explanation
Indices: 21004646--21004677 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
21004636 ATAGCACATT
21004646 TCAAAAC-ATGCA
1 TCAAAACTATGCA
21004658 TCAAAACTATGCA
1 TCAAAACTATGCA
21004671 -CAAAACT
1 TCAAAACT
21004678 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:21011804 original size:12 final size:13
Alignment explanation
Indices: 21011787--21011818 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
21011777 ATAGCACATT
21011787 TCAAAAC-ATGCA
1 TCAAAACTATGCA
21011799 TCAAAACTATGCA
1 TCAAAACTATGCA
21011812 -CAAAACT
1 TCAAAACT
21011819 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:21036990 original size:47 final size:45
Alignment explanation
Indices: 21036922--21037136 Score: 128
Period size: 46 Copynumber: 4.6 Consensus size: 45
21036912 TGTGAGCTAA
*
21036922 TGTAAGAAATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGAGCCAG
*** * * * *
21036968 TGTAAGACCATGTCTGGGACATGGCATC-AATATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATATGAGAGCCAG
* * * * * * * *
21037016 TGTCAGACATGTCTAGGACCTACTTAGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATG-AGAGCCAG
* * * * * *
21037062 TGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGATAGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATGAGAGCCAG
21037108 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
21037137 ACTTGAGATA
Statistics
Matches: 128, Mismatches: 31, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
45 1 0.01
46 60 0.47
47 40 0.31
48 26 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGAGCCAG
Found at i:21037097 original size:46 final size:47
Alignment explanation
Indices: 21036922--21037183 Score: 191
Period size: 47 Copynumber: 5.6 Consensus size: 47
21036912 TGTGAGCTAA
* * *
21036922 TGTAAGA-AATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCTACGA-GATGAGAGCCAG
** * * *
21036968 TGTAAGACCATGTCTGGGACATGGCATC-AATATTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGAGAGCCAG
* * * * * *
21037016 TGTCAGA-CATGTCTAGGACCTACTTAGGCCT-CGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGG-CTACGAGATG-AGAGCCAG
* * * *
21037062 TGTAAGA-CATGTCTAGGACATGCATCGGCTACGAGATGATAGTCAA
1 TGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGAGAGCCAG
* * *
21037108 TGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGAT-ATGAGCCAA
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCTACGAGATGA-GAGCCAG
*
21037155 TGTAAGACCATGTTTGGGACATTGCATCG
1 TGTAAGACCATGTCTGGGACA-TGCATCG
21037184 ACACCTTACC
Statistics
Matches: 171, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
45 3 0.02
46 61 0.36
47 76 0.44
48 30 0.18
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGAGAGCCAG
Found at i:21039225 original size:170 final size:171
Alignment explanation
Indices: 21038939--21039287 Score: 434
Period size: 170 Copynumber: 2.0 Consensus size: 171
21038929 TATATAAACT
* * *
21038939 TTATGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGTGATCTCGGGATCGCTAGACCGAGTCACC
1 TTATGTGACAGCCCAAAAGTGACCCTAGTCGGAAAGTGATCTCGGGACCGCTAAACCGAGTCACC
* * * *
21039004 AAATTATTTGAATCTGATAATTATTGCCTAAAATATGTGAATATAAATGTGTGAAAGTTTTAAGC
66 AAATTATTCGAATCTGATAATTATGGCCTAAAATATGTGAATATAAATGTGTGAAAATTTCAAGC
* **
21039069 TTCGATTTAGTTAATTGCATGTCA-ATTTAGTTGATAGGAC
131 TTCGATTTAGTCAATTGCATGTCAGATTTAGTAAATAGGAC
* * * * *
21039109 TTATGTGACATCCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACC
1 TTATGTGACAGCCCAAAAGTGACCCTAGTCGGAAAGTGATCTCGGGACCGCTAAACCGAGTCACC
* * * * * *
21039174 GAAA-TGTTCGAATGTGATATTTATGGTCTAGAATATGT-AATTATGAATGTGTGAAAATTTCAA
66 -AAATTATTCGAATCTGATAATTATGGCCTAAAATATGTGAA-TATAAATGTGTGAAAATTTCAA
* * * *
21039237 GCTTTGATTTAGTCGATTGCATGTGAGTTTTAGTAAATAGGAC
129 GCTTCGATTTAGTCAATTGCATGTCAGATTTAGTAAATAGGAC
21039280 TTATGTGA
1 TTATGTGA
21039288 GAAAATTTTG
Statistics
Matches: 151, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
169 2 0.01
170 125 0.83
171 24 0.16
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (171 bp):
TTATGTGACAGCCCAAAAGTGACCCTAGTCGGAAAGTGATCTCGGGACCGCTAAACCGAGTCACC
AAATTATTCGAATCTGATAATTATGGCCTAAAATATGTGAATATAAATGTGTGAAAATTTCAAGC
TTCGATTTAGTCAATTGCATGTCAGATTTAGTAAATAGGAC
Found at i:21040907 original size:40 final size:40
Alignment explanation
Indices: 21040715--21040900 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
21040705 TTGAATGATG
* * * * *
21040715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
21040755 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
21040795 TCCGGGCTAAG-CCCGAAGGCAATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGC-ATTTGTGCGAGTTACTAAA
21040835 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
21040876 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
21040901 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 8 0.06
40 101 0.79
41 19 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:21040907 original size:80 final size:79
Alignment explanation
Indices: 21040768--21040933 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 79
21040758 GGACTAAGAT
* **
21040768 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCAATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCAATTTGAACGAG-TAGCT
*
21040832 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * *
21040848 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGTTATGTCCCGAAGGC-ATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAATTTGAACGAGTAGC
* *
21040911 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
21040927 CCGAAGG
1 CCGAAGG
21040934 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 47 0.64
81 9 0.12
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCAATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:21044001 original size:40 final size:41
Alignment explanation
Indices: 21043943--21044213 Score: 347
Period size: 40 Copynumber: 6.8 Consensus size: 41
21043933 ATTTGAATGA
* * *
21043943 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
*
21043983 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
* *
21044024 T-TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
* * * *
21044063 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
*
21044103 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
* *
21044143 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
* * * *
21044183 TACCCAGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
21044214 TTGTGGTTAT
Statistics
Matches: 204, Mismatches: 22, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
39 3 0.01
40 192 0.94
41 9 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTT
Found at i:21044159 original size:120 final size:120
Alignment explanation
Indices: 21043946--21044233 Score: 488
Period size: 120 Copynumber: 2.4 Consensus size: 120
21043936 TGAATGATAT
* * * *
21043946 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
21044011 TGCGAGTTGATATTTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
21044066 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
21044131 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* * * *
21044186 CCAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
21044234 ATTCCGAAGA
Statistics
Matches: 159, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.04
120 153 0.96
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:21061548 original size:40 final size:39
Alignment explanation
Indices: 21061464--21061648 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
21061454 TCGAATGATG
* * * *
21061464 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTATGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
21061504 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
21061544 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
21061583 TCCGGGTTAAGTCCCGAAGGTATTTGTGCCAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
21061624 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
21061649 AATGAGTAGC
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 34 0.28
40 75 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:21061600 original size:79 final size:81
Alignment explanation
Indices: 21061464--21061646 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 81
21061454 TCGAATGATG
* * *
21061464 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTATGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGATGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
21061528 TGTGCGAGATACTA-A
66 TGTGCCAGATACTATA
* * ** *
21061543 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGTA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCGATGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
21061605 TTTGTGCCAGTTACTATA
64 TTTGTGCCAGATACTATA
* * *
21061623 ACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
21061647 TGAATGAGTA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.64
80 30 0.35
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGATGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCCAGATACTATA
Found at i:21072338 original size:17 final size:17
Alignment explanation
Indices: 21072303--21072337 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
21072293 TTTCTCTCTA
*
21072303 TTCTTTTTGATTTCTTT
1 TTCTTTTTCATTTCTTT
21072320 TTCTTTTTCA-TTCTTT
1 TTCTTTTTCATTTCTTT
21072336 TT
1 TT
21072338 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.77
Consensus pattern (17 bp):
TTCTTTTTCATTTCTTT
Found at i:21085951 original size:37 final size:37
Alignment explanation
Indices: 21085901--21086006 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
21085891 GCTCGAATAG
*
21085901 TCCCCACACGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
21085938 TCCCCACACGTAGTCATCGGGTCTTTCCCGGACATAA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
21085975 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGA
21086007 ATATATTTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.24
Consensus pattern (37 bp):
TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:21086205 original size:48 final size:48
Alignment explanation
Indices: 21086147--21086715 Score: 985
Period size: 48 Copynumber: 11.9 Consensus size: 48
21086137 ATATACACAC
* *
21086147 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACAACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
21086195 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
21086243 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
21086291 ATCTCATTCTTATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
21086339 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
21086387 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
21086435 ATCTCATACATATTTCACAGTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
21086483 ATCACATACATATTTCACATTAGCCATTCTGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21086531 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
21086579 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21086627 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACTTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
21086675 ATCTCATATATATATCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
21086716 CACATATATA
Statistics
Matches: 493, Mismatches: 28, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 493 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:21089897 original size:29 final size:29
Alignment explanation
Indices: 21089864--21089937 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
21089854 GATTAAAGAA
*
21089864 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAACTACCAAT
**
21089893 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAACTACCAAT
*
21089922 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
21089938 TCAGTTGAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAACTACCAAT
Found at i:21089929 original size:86 final size:85
Alignment explanation
Indices: 21089809--21089969 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
21089799 GAAACACACT
* *
21089809 TCGCATACACAGTGCCCACTGACTGATTTCGCACACATAGCACTC-GATTAAAGAACTCGCACAC
1 TCGCACACACAGTGCCCACTGACTGATCTCGCACACATAGCACTCAG-TTAAAGAACTCGCACAC
*
21089873 ATAGTGCCTCAATTACCAATC
65 ACAGTGCCTCAATTACCAATC
* * ** * *
21089894 TCGCACACATAGTGCCTCAACT-ACTGATCTGGCACACATAGTGCTCAGTTGAAGAACTTGCACA
1 TCGCACACACAGTGCC-C-ACTGACTGATCTCGCACACATAGCACTCAGTTAAAGAACTCGCACA
21089958 CACAGTGCCTCA
64 CACAGTGCCTCA
21089970 TAACTCCAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 14 0.22
86 46 0.72
87 4 0.06
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (85 bp):
TCGCACACACAGTGCCCACTGACTGATCTCGCACACATAGCACTCAGTTAAAGAACTCGCACACA
CAGTGCCTCAATTACCAATC
Found at i:21090041 original size:40 final size:40
Alignment explanation
Indices: 21089997--21090360 Score: 430
Period size: 40 Copynumber: 9.4 Consensus size: 40
21089987 CCTTCGAGGT
*
21089997 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* * * **
21090037 TTAGCCCGGATACATTACTAGCACGAATGCTCTTTGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
21090077 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* **
21090117 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
21090157 TTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
21090197 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACT-AGCACGAATGCTCTTCGGGAC
*
21090237 TTAG--C------AT--C-AGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* * *
21090266 TTAGCCCAGATATAACA-TCAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATATCACT-AGCACGAATGCTCTTCGGGAC
* *
21090306 TTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
21090346 TTAGCCCGGCTATAT
1 TTAGCCCGGATATAT
21090361 AACTCTCAAT
Statistics
Matches: 287, Mismatches: 22, Indels: 30
0.85 0.06 0.09
Matches are distributed among these distances:
29 24 0.08
31 1 0.00
32 1 0.00
37 1 0.00
38 1 0.00
40 259 0.90
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:21090254 original size:29 final size:29
Alignment explanation
Indices: 21090212--21090270 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
21090202 CCGGATATAA
21090212 CATCAGCACGAATGCTCTTCGGGACTTAG
1 CATCAGCACGAATGCTCTTCGGGACTTAG
*
21090241 CATCAGCACGAATGCTCTTTGGGACTTAG
1 CATCAGCACGAATGCTCTTCGGGACTTAG
21090270 C
1 C
21090271 CCAGATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (29 bp):
CATCAGCACGAATGCTCTTCGGGACTTAG
Found at i:21090286 original size:69 final size:69
Alignment explanation
Indices: 21090175--21090310 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
21090165 GATATAACAC
*
21090175 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACGAATGCTCTTCGGGACTTA
1 CAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAACATCAGCACGAATGCTCTTCGGGACTTA
21090240 GCAT
66 GCAT
* *
21090244 CAGCACGAATGCTCTTTGGGACTTAGCCCAGATATAACATCAGCACGAATGCTCTTTGGGACTTA
1 CAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAACATCAGCACGAATGCTCTTCGGGACTTA
21090309 GC
66 GC
21090311 CCGGATATAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (69 bp):
CAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAACATCAGCACGAATGCTCTTCGGGACTTA
GCAT
Found at i:21090328 original size:109 final size:109
Alignment explanation
Indices: 21090136--21090350 Score: 367
Period size: 109 Copynumber: 2.0 Consensus size: 109
21090126 ATACATCACT
*
21090136 AGCACGAATGCTCTTCGAAACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTTCGAAACTTAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGACTTAG
*
21090201 CCCGGATATAACATCAGCACGAATGCTCTTCGGGACTTAGCATC
66 CCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCATC
* ** * *
21090245 AGCACGAATGCTCTTTGGGACTTAGCCCAGATATAACATCAGCACGAATGCTCTTTGGGACTTAG
1 AGCACGAATGCTCTTCGAAACTTAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGACTTAG
21090310 CCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
66 CCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
21090351 CCGGCTATAT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 99 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (109 bp):
AGCACGAATGCTCTTCGAAACTTAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGACTTAG
CCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCATC
Found at i:21091683 original size:37 final size:37
Alignment explanation
Indices: 21091633--21091738 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
21091623 GCTCGAATAG
*
21091633 TCCCCACACGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
21091670 TCCCCACACGTAGTCATCGGGTCTTTCCCGGACATAA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
21091707 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCCCCACACGTAGTCATCGGGTCTTACCCGGA
21091739 ATATATTTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.24
Consensus pattern (37 bp):
TCCCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:21091940 original size:48 final size:48
Alignment explanation
Indices: 21091879--21092679 Score: 1303
Period size: 48 Copynumber: 16.9 Consensus size: 48
21091869 ATATACACAC
* *
21091879 ATCTCCTACATATTTCACACTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21091927 AGCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21091975 ATCTCACACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** *
21092023 ATCTCATTTATATTTCACTCTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
21092071 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21092119 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACCT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
21092167 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21092215 ATCTCATACATATTTCACACTAGCCATTCGGCTTTTCCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21092263 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
21092311 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
21092359 ATCTCCTACAGATTTCACACTAGCTATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21092407 ATCTCATACATATTTCACATTAGCCATT---C--T---ACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21092447 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
21092495 ATCTCATACATATTCCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
21092543 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
21092591 ATTTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
21092639 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
21092680 CACATATATA
Statistics
Matches: 701, Mismatches: 44, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
40 38 0.05
43 2 0.00
45 2 0.00
48 659 0.94
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:21102028 original size:15 final size:15
Alignment explanation
Indices: 21102005--21102038 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21101995 TAACTTTCTT
*
21102005 GAGGCAAAATCATAG
1 GAGGAAAAATCATAG
*
21102020 GAGGAAAAATCCTAG
1 GAGGAAAAATCATAG
21102035 GAGG
1 GAGG
21102039 TATAAGAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (15 bp):
GAGGAAAAATCATAG
Found at i:21110307 original size:47 final size:47
Alignment explanation
Indices: 21110244--21110606 Score: 656
Period size: 47 Copynumber: 7.7 Consensus size: 47
21110234 ATGATAGTAT
21110244 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
21110291 GGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21110338 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
21110385 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21110432 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21110479 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
21110526 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
21110574 GGGCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
21110607 CCTGAAGGGC
Statistics
Matches: 306, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 263 0.86
48 27 0.09
49 16 0.05
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:21110780 original size:37 final size:37
Alignment explanation
Indices: 21110724--21110802 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21110714 CCGAGCTCTA
* * *
21110724 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21110761 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21110798 AAGAC
1 AAGAC
21110803 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21113175 original size:40 final size:40
Alignment explanation
Indices: 21113131--21113366 Score: 303
Period size: 40 Copynumber: 5.9 Consensus size: 40
21113121 GAGTTACTAA
*
21113131 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
21113171 ATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
21113211 ATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
21113250 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* ** * * * *
21113290 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * * *
21113330 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
21113367 CGTGTATTCG
Statistics
Matches: 170, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 36 0.21
40 134 0.79
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:21113247 original size:79 final size:79
Alignment explanation
Indices: 21113131--21113366 Score: 319
Period size: 79 Copynumber: 3.0 Consensus size: 79
21113121 GAGTTACTAA
* *
21113131 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCAT
1 ATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
21113196 TCATGCTAGTGATAT
65 TCATGCTAGTGATAT
21113211 ATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 ATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
*
21113276 CGTGCTAGTGATAT
66 CATGCTAGTGATAT
* ** * * * * * * * *
21113290 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAA
1 ATCCGGGCTAAGTCCC-GAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
*
21113355 TCATGCTGGTGA
65 TCATGCTAGTGA
21113367 CGTGTATTCG
Statistics
Matches: 139, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
79 72 0.52
80 67 0.48
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
CATGCTAGTGATAT
Found at i:21113257 original size:119 final size:119
Alignment explanation
Indices: 21113131--21113347 Score: 335
Period size: 119 Copynumber: 1.8 Consensus size: 119
21113121 GAGTTACTAA
* ***
21113131 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCAAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCAT
21113196 TCATGCTAGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGT
66 TCATGCTAGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGT
* * *
21113250 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCAT
* * * *
21113315 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGA
66 TCATGCTAGTGATATATCCGGGCTAAGTCCCGA
21113348 AGAGTAATCA
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
119 87 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (119 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCAT
TCATGCTAGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATGT
Found at i:21116928 original size:47 final size:47
Alignment explanation
Indices: 21116865--21117277 Score: 727
Period size: 47 Copynumber: 8.7 Consensus size: 47
21116855 ATGATAGTAT
21116865 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
21116912 GGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21116959 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
21117006 TGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21117053 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21117100 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
21117147 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
* *
21117196 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
21117245 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
21117278 CCTGAAGGGC
Statistics
Matches: 352, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 260 0.74
49 88 0.25
50 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:21117451 original size:37 final size:37
Alignment explanation
Indices: 21117395--21117473 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21117385 CCGAGCTCTA
* * *
21117395 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21117432 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21117469 AAGAC
1 AAGAC
21117474 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21125634 original size:40 final size:39
Alignment explanation
Indices: 21125597--21125781 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
21125587 GCTACTCGTT
*
21125597 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
* *
21125637 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GTTTAGTAACTCGCA
* *
21125677 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAACTCGCA
* ** * * *
21125717 CAAATGCCTTC-GGATCTTAGTCCGGACATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGT-AACTCGCA
21125758 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
21125782 ACATCATTCA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 109 0.87
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:21131739 original size:18 final size:17
Alignment explanation
Indices: 21131712--21131745 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21131702 TAATTTTTTT
*
21131712 ATATTTATATTTTTTAA
1 ATATTTATATATTTTAA
21131729 ATATTTCATATATTTTA
1 ATATTT-ATATATTTTA
21131746 CAAAAAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATTTATATATTTTAA
Found at i:21132029 original size:43 final size:43
Alignment explanation
Indices: 21131968--21132090 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 43
21131958 GAAAATGCCA
* * **
21131968 CTATAAAACATGATCTTTACTGGTGCTTTTCATACAAACG-CTG
1 CTATAGAACATGATCTTTACCGGCACTTTTCATACAAACGTC-G
*
21132011 CTATAGAACATGATCTTTACCGGCACTTTTCCTACAAACGTCG
1 CTATAGAACATGATCTTTACCGGCACTTTTCATACAAACGTCG
* * * * *
21132054 CTATAGAATATGATCTTTAGCAGCGCTTTTCCTACAA
1 CTATAGAACATGATCTTTACCGGCACTTTTCATACAA
21132091 GCGCTGTAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
43 69 0.99
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (43 bp):
CTATAGAACATGATCTTTACCGGCACTTTTCATACAAACGTCG
Found at i:21133503 original size:37 final size:36
Alignment explanation
Indices: 21133443--21133520 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
21133433 TTATTACGAA
* *
21133443 GTCTTACCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCGGACAAAATCTCCACACGAAGTCATCGG
*
21133479 GTCTTACCCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTA-CCGGACAAAATCT-CCACACGAAGTCATCGG
21133516 GTCTT
1 GTCTT
21133521 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 7 0.19
37 30 0.81
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (36 bp):
GTCTTACCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:21133717 original size:47 final size:47
Alignment explanation
Indices: 21133639--21134032 Score: 616
Period size: 47 Copynumber: 8.5 Consensus size: 47
21133629 CCCTTCGGGA
* * * * * * * *
21133639 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
21133686 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
21133733 CTTAT-ATATATATACACTTTCACATTCATCA-ATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
21133778 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
21133825 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
21133872 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
21133917 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
21133964 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
21134011 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
21134033 TTGGCTGAAT
Statistics
Matches: 324, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
45 63 0.19
46 49 0.15
47 212 0.65
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:21133798 original size:92 final size:94
Alignment explanation
Indices: 21133639--21134032 Score: 607
Period size: 92 Copynumber: 4.2 Consensus size: 94
21133629 CCCTTCGGGA
* * * * * * * * * * *
21133639 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
21133704 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
21133733 CTTAT-ATATATATACACTTTCACATTCATCA-ATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
*
21133796 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
21133825 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT--CACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
*
21133888 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
21133917 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
*
21133982 TTTCACATTCATCACATCGACCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
21134011 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
21134033 TTGGCTGAAT
Statistics
Matches: 277, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
92 148 0.53
93 47 0.17
94 82 0.30
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:21133881 original size:22 final size:22
Alignment explanation
Indices: 21133853--21133925 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
21133843 TTTCACATTC
21133853 ATCACATCGGCTATTAGGCCTT
1 ATCACATCGGCTATTAGGCCTT
*** *** *
21133875 ATCACATATAC-ACTTTCACATT
1 ATCACATCGGCTA-TTAGGCCTT
21133897 CATCACATCGGCTATTAGGCCTT
1 -ATCACATCGGCTATTAGGCCTT
21133920 ATCACA
1 ATCACA
21133926 CATATACACT
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 13 0.38
24 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATCGGCTATTAGGCCTT
Found at i:21133907 original size:139 final size:138
Alignment explanation
Indices: 21133639--21134032 Score: 617
Period size: 139 Copynumber: 2.8 Consensus size: 138
21133629 CCCTTCGGGA
** * * * * * * * * *
21133639 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
* *
21133704 TTTCACATTCATCACATCGGCCATTAGGCCTTATATATATATACACTTTCACATTCATCAATCGG
66 TTTCACATTCATCACATCGGCCATTAGGCCTTAT-CACATATACACTTTCACATTCATCAATCGG
21133769 CTATTAGGC
130 CTATTAGGC
21133778 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
*
21133843 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTTTCACATTCATCACATCGG
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACTTTCACATTCATCA-ATCGG
21133908 CTATTAGGC
130 CTATTAGGC
21133917 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
*
21133982 TTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACACTTTC
21134033 TTGGCTGAAT
Statistics
Matches: 236, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
138 23 0.10
139 201 0.85
141 12 0.05
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (138 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACTTTCACATTCATCAATCGGC
TATTAGGC
Found at i:21138140 original size:29 final size:29
Alignment explanation
Indices: 21138101--21138179 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
21138091 CTTAATAATC
*
21138101 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
21138131 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
21138160 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
21138180 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:21140133 original size:37 final size:37
Alignment explanation
Indices: 21140083--21140161 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
21140073 TTATTACGAA
* *
21140083 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
21140120 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
21140157 GTCTT
1 GTCTT
21140162 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:21140357 original size:47 final size:47
Alignment explanation
Indices: 21140279--21140676 Score: 593
Period size: 47 Copynumber: 8.5 Consensus size: 47
21140269 CCCTTCGGGA
* * * * * * *
21140279 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
21140326 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21140373 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
21140420 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
21140467 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
21140512 CTTATCACATATATACACTTTCACACTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
21140559 CTTATCATACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
21140606 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21140655 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
21140677 TTGGCTGAAT
Statistics
Matches: 325, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
45 45 0.14
47 236 0.73
49 44 0.14
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:21140473 original size:22 final size:22
Alignment explanation
Indices: 21140448--21140521 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
21140438 TTTCACATTC
21140448 ATCACATCGGCTATTAGGCCTT
1 ATCACATCGGCTATTAGGCCTT
*** *** *
21140470 ATCACATATAC-ACTTTCACATT
1 ATCACATCGGCTA-TTAGGCCTT
21140492 CATCACATCGGCTATTAGGCCTT
1 -ATCACATCGGCTATTAGGCCTT
21140515 ATCACAT
1 ATCACAT
21140522 ATATACACTT
Statistics
Matches: 35, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
21 1 0.03
22 20 0.57
23 13 0.37
24 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATCGGCTATTAGGCCTT
Found at i:21140531 original size:139 final size:140
Alignment explanation
Indices: 21140279--21140676 Score: 582
Period size: 139 Copynumber: 2.8 Consensus size: 140
21140269 CCCTTCGGGA
** * * * * * * * * *
21140279 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA-ATATACAC
* *
21140344 TTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACACTCATCACATC
21140409 GGCCATTAGGC
130 GGCCATTAGGC
* *
21140420 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATACACT
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAATATACACT
*
21140484 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACACTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACACTCATCACATCG
*
21140549 GCTATTAGGC
131 GCCATTAGGC
*
21140559 CTTATCATACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--A-ATATAC
*
21140624 ACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTC
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
21140677 TTGGCTGAAT
Statistics
Matches: 233, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
139 132 0.57
141 44 0.19
143 57 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (140 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACACTCATCACATCG
GCCATTAGGC
Found at i:21149020 original size:27 final size:26
Alignment explanation
Indices: 21149003--21149072 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
21148993 ATATTAAGTC
21149003 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
21149030 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
21149058 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
21149073 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:21149066 original size:28 final size:28
Alignment explanation
Indices: 21149003--21149100 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
21148993 ATATTAAGTC
*
21149003 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
21149030 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
21149058 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
21149087 CACACACTTAGTGC
1 CGCACACTTAGTGC
21149101 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:21149564 original size:12 final size:12
Alignment explanation
Indices: 21149547--21149573 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
21149537 TGGGCATACT
21149547 TATGTATATATA
1 TATGTATATATA
21149559 TATGTATATATA
1 TATGTATATATA
21149571 TAT
1 TAT
21149574 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:21151131 original size:43 final size:42
Alignment explanation
Indices: 21150993--21151131 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 42
21150983 AAACACCGCA
21150993 AAAGATCATGTTCTTTAGCGGCGTTTGTAGTAAAAGTGCCACT
1 AAAGAT-ATGTTCTTTAGCGGCGTTTGTAGTAAAAGTGCCACT
* * *
21151036 AAATATCATGTT-TTATAGCAGCGATTT-TAGTAAAAGTGCCGCT
1 AAAGAT-ATGTTCTT-TAGCGGCG-TTTGTAGTAAAAGTGCCACT
* ** *
21151079 AAAG-TATGTTCTTTAGCGGCGTTTGTTGTAAAAAAGCCATT
1 AAAGATATGTTCTTTAGCGGCGTTTGTAGTAAAAGTGCCACT
21151120 AAAGACTATGTT
1 AAAGA-TATGTT
21151132 TTACAGTAGC
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
40 3 0.04
41 27 0.34
42 5 0.06
43 42 0.52
44 3 0.04
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAAGATATGTTCTTTAGCGGCGTTTGTAGTAAAAGTGCCACT
Found at i:21151480 original size:21 final size:21
Alignment explanation
Indices: 21151456--21151503 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
21151446 ATTTTCTTGT
*
21151456 TGCCTCTGCTGCCCTTGCTAC
1 TGCCTCTGCTGCCCTCGCTAC
* *
21151477 TGCCTCTGCTTCCCTCGCTGC
1 TGCCTCTGCTGCCCTCGCTAC
21151498 TGCCTC
1 TGCCTC
21151504 CAGTTTAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.46, G:0.19, T:0.33
Consensus pattern (21 bp):
TGCCTCTGCTGCCCTCGCTAC
Found at i:21163123 original size:28 final size:28
Alignment explanation
Indices: 21163058--21163153 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
21163048 CATGAGATTG
* * *
21163058 GCACTAAGTGTG-G-GTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
21163085 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
21163113 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
21163140 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
21163154 GACTTAATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 36 0.57
28 23 0.37
29 4 0.06
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:21163164 original size:27 final size:27
Alignment explanation
Indices: 21163084--21163166 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
21163074 TAAATTGTAC
* *
21163084 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
21163112 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
21163139 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
21163166 A
1 A
21163167 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:21171443 original size:27 final size:28
Alignment explanation
Indices: 21171359--21171456 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
21171349 CATGAGATTG
* * * *
21171359 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
21171388 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
21171416 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
21171443 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
21171457 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:21171467 original size:27 final size:27
Alignment explanation
Indices: 21171387--21171469 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
21171377 TAAATTGTAC
* *
21171387 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
21171415 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
21171442 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
21171469 A
1 A
21171470 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:21174225 original size:13 final size:13
Alignment explanation
Indices: 21174207--21174231 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21174197 GAAATAGCAT
21174207 GTATGAAAATTTC
1 GTATGAAAATTTC
21174220 GTATGAAAATTT
1 GTATGAAAATTT
21174232 GATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
GTATGAAAATTTC
Found at i:21175827 original size:23 final size:23
Alignment explanation
Indices: 21175783--21175828 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
21175773 TATAGATATC
*
21175783 GAAACTACTGTGAGCTCGAGGAT
1 GAAACTACTGTGAGCTCAAGGAT
*
21175806 GAAACTACTGTGAGCTTAAGGAT
1 GAAACTACTGTGAGCTCAAGGAT
21175829 CGTCGAGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (23 bp):
GAAACTACTGTGAGCTCAAGGAT
Found at i:21178426 original size:40 final size:39
Alignment explanation
Indices: 21178321--21178464 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 39
21178311 TGGATGATAA
*
21178321 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
*
21178361 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
21178400 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
21178440 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
21178465 AGCAAGTAGT
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
39 32 0.34
40 62 0.66
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:21178487 original size:79 final size:79
Alignment explanation
Indices: 21178323--21178470 Score: 217
Period size: 79 Copynumber: 1.9 Consensus size: 79
21178313 GATGATAACC
* * *
21178323 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCAGGCTAAGCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCAGGCTAAGCCCGAAGGCATTTGAGC
*
21178388 GAGCTACTATATCT
66 AAGCTACTATATCT
* *
21178402 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCAGGCTAAG-CCCGAAGGCATTTGA
21178466 GCAAG
64 GCAAG
21178471 TAGTTATATT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.03
79 41 0.67
80 18 0.30
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCAGGCTAAGCCCGAAGGCATTTGAGC
AAGCTACTATATCT
Found at i:21188475 original size:48 final size:47
Alignment explanation
Indices: 21188405--21188617 Score: 182
Period size: 48 Copynumber: 4.4 Consensus size: 47
21188395 AGTGCTAAAC
* * * *
21188405 TCATGGCACGAATCCAACTCAATATATCTCGCACCCGAAGTGATAATA
1 TCATGGCCCGAAGCCAAATCAATA-ATCTCGCACCCGAAGTGACAATA
* * * * * *
21188453 TCATGGCCCGTAGCCAAATCAATGAAGCTTG-ATCCTGAAGTGCCGATA
1 TCATGGCCCGAAGCCAAATCAAT-AATCTCGCA-CCCGAAGTGACAATA
* * * *
21188501 TCATGGCCTGAAGCCAAACCAATGTATCTCACACCCGAAGTG-CTAATA
1 TCATGGCCCGAAGCCAAATCAAT-AATCTCGCACCCGAAGTGAC-AATA
21188549 TCATGGCCCGAAGCCAAATCGAAGTAA-CTCGCACCCGAAGT-ACCAATA
1 TCATGGCCCGAAGCCAAATC-AA-TAATCTCGCACCCGAAGTGA-CAATA
**
21188597 TCATGGCCTAAAGCCAAATCA
1 TCATGGCCCGAAGCCAAATCA
21188618 TTGTATCCCC
Statistics
Matches: 132, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
47 3 0.02
48 122 0.92
49 6 0.05
50 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (47 bp):
TCATGGCCCGAAGCCAAATCAATAATCTCGCACCCGAAGTGACAATA
Found at i:21188558 original size:96 final size:96
Alignment explanation
Indices: 21188424--21188624 Score: 255
Period size: 96 Copynumber: 2.1 Consensus size: 96
21188414 GAATCCAACT
* * * *
21188424 CAATATATCTCGCACCCGAAGTGATAATATCATGGCCCGTAGCCAAATC-AA-TGAAGCTTG-AT
1 CAATGTATCTCACACCCGAAGTGATAATATCATGGCCCGAAGCCAAATCGAAGT-AA-CTCGCA-
* * * *
21188486 CCTGAAGTGCCGATATCATGGCCTGAAGCCAAAC
63 CCCGAAGTACCAATATCATGGCCTAAAGCCAAAC
*
21188520 CAATGTATCTCACACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCGAAGTAACTCGCACCC
1 CAATGTATCTCACACCCGAAGTGATAATATCATGGCCCGAAGCCAAATCGAAGTAACTCGCACCC
*
21188585 GAAGTACCAATATCATGGCCTAAAGCCAAAT
66 GAAGTACCAATATCATGGCCTAAAGCCAAAC
*
21188616 CATTGTATC
1 CAATGTATC
21188625 CCCTAATGAC
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
96 85 0.93
97 5 0.05
98 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.21
Consensus pattern (96 bp):
CAATGTATCTCACACCCGAAGTGATAATATCATGGCCCGAAGCCAAATCGAAGTAACTCGCACCC
GAAGTACCAATATCATGGCCTAAAGCCAAAC
Found at i:21193164 original size:46 final size:45
Alignment explanation
Indices: 21193030--21193193 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 45
21193020 ATGCAAACGC
* *
21193030 CATGTCCCAGACATGTTCTTACACTAACAC--ATCTCATAGCTGATG
1 CATGTCCCAGACATG-TCTTACACTAGCACTTATCTCAT-GCCGATG
* * * *
21193075 CATGTCTCAGACATGTCTTACACT-G-GCTTACATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTT--ATC-TCATGCCGATG
*
21193121 CATGTCCCAGACATGTCTTACACTAGCACTTGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTTATCTC-ATGCCGATG
21193167 TCATGTCCCAGACATGGTCTTACACTA
1 -CATGTCCCAGACAT-GTCTTACACTA
21193194 TCTCACAATA
Statistics
Matches: 98, Mismatches: 11, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
44 9 0.09
45 15 0.15
46 42 0.43
47 17 0.17
48 14 0.14
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCACTTATCTCATGCCGATG
Found at i:21205277 original size:46 final size:47
Alignment explanation
Indices: 21205155--21205277 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 47
21205145 TTATGAGAGC
* *
21205155 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACGAGTG
* *
21205202 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCGAC-TATGAGATGTGT-
1 C-AGTGTAAGACCATGTTTGGGACATGGCATCGACAT-TGAGACGAGTG
21205247 CAGTGTAAGACCATGTTTGGGACATGGCATC
1 CAGTGTAAGACCATGTTTGGGACATGGCATC
21205278 AGCACAGATA
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
44 9 0.13
45 16 0.24
46 20 0.29
47 14 0.21
48 9 0.13
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACGAGTG
Found at i:21215648 original size:21 final size:22
Alignment explanation
Indices: 21215622--21215662 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
21215612 CACTTGACAC
21215622 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
*
21215643 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCATGTG
21215663 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:21216911 original size:46 final size:46
Alignment explanation
Indices: 21216846--21217060 Score: 172
Period size: 46 Copynumber: 4.6 Consensus size: 46
21216836 CGATGCCTTT
* *
21216846 TCCCTGACATGGTCTTACACT-GAC-TATCATCTCGTA-GTCGATGCATG
1 TCCCAGACAT-GTCTTACACTAG-CTTA-CATCTCG-AGGCCGATGCATG
* *
21216893 TGCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCCGATGCATG
* * * * *
21216939 TCCCAAACATGTCTTACACTAGCCCT-CATCTCAATGCTGATGCCATG
1 TCCCAGACATGTCTTACACTAG-CTTACATCTCGAGGCCGATG-CATG
* * * * *
21216986 TCTCAGACATGCTCTTACTCTGGCTCT-CATAAT-GAGGCCGATGCGTG
1 TCCCAGACATG-TCTTACACTAGCT-TACAT-CTCGAGGCCGATGCATG
*
21217033 TCCCAGACATGCCTTACACTAGCTTACA
1 TCCCAGACATGTCTTACACTAGCTTACA
21217061 CAAGTGACCC
Statistics
Matches: 134, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 71 0.53
47 40 0.30
48 20 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCCGATGCATG
Found at i:21223285 original size:20 final size:22
Alignment explanation
Indices: 21223260--21223299 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
21223250 CACTTAACAT
21223260 AGGGGC-ACAC-CCCGTGTGGG
1 AGGGGCAACACTCCCGTGTGGG
21223280 AGGGGCAACACTCCCGTGTG
1 AGGGGCAACACTCCCGTGTG
21223300 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.17, C:0.30, G:0.40, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACTCCCGTGTGGG
Found at i:21225192 original size:44 final size:44
Alignment explanation
Indices: 21224931--21225170 Score: 363
Period size: 44 Copynumber: 5.5 Consensus size: 44
21224921 TGGTATTAAT
* **
21224931 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACATGCATCAAA
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATTGAA
* * *
21224975 TTGAATTTTACGTGTAAGACCGTATCTGGGACACAGGCATTGAT
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATTGAA
* * * *
21225019 TTGAAATTTATGTGTAAGATCGTGTCTGAGACACAGGCATTGAT
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATTGAA
* *
21225063 TTGAAATTTACATGTAAGACCATGTCTGGGACACAGGCATTGAA
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATTGAA
*
21225107 TTGAAATTTACATGTAAGACCGTGTCTGGGACACAGGCATTGAA
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATTGAA
21225151 TTGAAATTTACGTGTAAGAC
1 TTGAAATTTACGTGTAAGAC
21225171 TATGTCTAGG
Statistics
Matches: 177, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 177 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (44 bp):
TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATTGAA
Found at i:21231842 original size:39 final size:40
Alignment explanation
Indices: 21231721--21231901 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
21231711 GCTACTCGTT
* *
21231721 CAAATGCCTTCGGGACATAGCCAGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCAGGATT-TAGTAACTCGCA
* *
21231761 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCAGGATTTAGTAACTCGCA
* * *
21231801 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCAGGATTTAGTAACTCGCA
* * * * * *
21231840 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCAGGATTTAGTAAC-TCGCA
21231881 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
21231902 CGGACATCAT
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 73 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCAGGATTTAGTAACTCGCA
Found at i:21233060 original size:20 final size:20
Alignment explanation
Indices: 21233035--21233077 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
21233025 ATCAACACAA
21233035 ATCCACCTTAGCCGAATATC
1 ATCCACCTTAGCCGAATATC
21233055 ATCCACCTTAGCCGAATATC
1 ATCCACCTTAGCCGAATATC
21233075 ATC
1 ATC
21233078 TCCATGACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.35, G:0.09, T:0.26
Consensus pattern (20 bp):
ATCCACCTTAGCCGAATATC
Found at i:21234118 original size:64 final size:64
Alignment explanation
Indices: 21234036--21234221 Score: 180
Period size: 67 Copynumber: 2.9 Consensus size: 64
21234026 AAGACATTAT
* *
21234036 AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
* * * * * * * *
21234100 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAAAGCCACGAGA
1 AATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCCACGAGA
21234165 TA
63 TA
* * * *
21234167 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCC
1 AA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCC
21234222 GAACTATATG
Statistics
Matches: 96, Mismatches: 21, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.17
67 29 0.30
68 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (64 bp):
AATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
Found at i:21238971 original size:87 final size:87
Alignment explanation
Indices: 21238756--21239002 Score: 397
Period size: 87 Copynumber: 2.8 Consensus size: 87
21238746 TGGTATTGAT
* * * *
21238756 TTGAAATTTACGTGTAAGATCGTGTCTGGGACACAGGCATCGGATTGAAATTTATGTGTAAAACT
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATC-GATTGAAATTTACGTGTAAGACC
*
21238821 GTGTCTGGGACACAGGCATCGAT
65 GTGTCTGGGACACAGGCATCGAA
* *
21238844 TTGAAATTTACGTGTAAGACTGTGTCTGGGACACATGCATCGATTTGAAATTTACGTGTAAGACC
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGA-TTGAAATTTACGTGTAAGACC
21238909 GTGTCTGGGA-ACAGGCATCGAA
65 GTGTCTGGGACACAGGCATCGAA
21238931 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAGACC
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCG-ATTGAAATTTACGTGTAAGACC
21238996 GTGTCTG
65 GTGTCTG
21239003 AGACGTCGGC
Statistics
Matches: 148, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
87 81 0.55
88 67 0.45
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (87 bp):
TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGATTGAAATTTACGTGTAAGACCG
TGTCTGGGACACAGGCATCGAA
Found at i:21238988 original size:131 final size:132
Alignment explanation
Indices: 21238753--21239002 Score: 430
Period size: 131 Copynumber: 1.9 Consensus size: 132
21238743 CGTTGGTATT
* * *
21238753 GATTTGAAATTTACGTGTAAGATCGTGTCTGGGACACAGGCATCGGATTGAAATTTATGTGTAAA
1 GATTTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAA
* * *
21238818 ACTGTGTCTGGGACACAGGCATCGATTTGAAATTTACGTGTAAGACTGTGTCTGGGACACATGCA
66 ACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAGACCGTGTCTGGGACACATGCA
21238883 TC
131 TC
*
21238885 GATTTGAAATTTACGTGTAAGACCGTGTCTGGGA-ACAGGCATCGAATTGAAATTTACGTGTAAG
1 GATTTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAA
21238949 ACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAGACCGTGTCTG
66 ACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAGACCGTGTCTG
21239003 AGACGTCGGC
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
131 78 0.70
132 33 0.30
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (132 bp):
GATTTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAA
ACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAGACCGTGTCTGGGACACATGCA
TC
Found at i:21239014 original size:44 final size:44
Alignment explanation
Indices: 21238756--21239002 Score: 406
Period size: 44 Copynumber: 5.6 Consensus size: 44
21238746 TGGTATTGAT
* *
21238756 TTGAAATTTACGTGTAAGATCGTGTCTGGGACACAGGCATCGGA
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
* * * *
21238800 TTGAAATTTATGTGTAAAACTGTGTCTGGGACACAGGCATCGAT
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
* * *
21238844 TTGAAATTTACGTGTAAGACTGTGTCTGGGACACATGCATCGAT
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
21238888 TTGAAATTTACGTGTAAGACCGTGTCTGGGA-ACAGGCATCGAA
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
21238931 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
1 TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
21238975 TTGAAATTTACGTGTAAGACCGTGTCTG
1 TTGAAATTTACGTGTAAGACCGTGTCTG
21239003 AGACGTCGGC
Statistics
Matches: 190, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 41 0.22
44 149 0.78
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (44 bp):
TTGAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAA
Found at i:21239096 original size:85 final size:86
Alignment explanation
Indices: 21238849--21239103 Score: 225
Period size: 87 Copynumber: 3.0 Consensus size: 86
21238839 TCGATTTGAA
* * * * ** * **
21238849 ATTTACGTGTAAGACTGTGTCTGGGACACATGCATCGATTTGAAATTTACGTGTAAGACCGTGTC
1 ATTTACGTATAAGACCGTGTCTGGGACAAAGGCATCGAACTGAAATTTACATGTAAGACCACGTC
* * * *
21238914 TGGGAAC--AGGCATCGAAT-T
66 TGAG-ACGTCGGCATTGTATCT
* * * * **
21238933 GAAATTTACGTGTAAGACCGTGTCTGGGACACAGGCATCGAATTGAAATTTACGTGTAAGACCGT
1 ---ATTTACGTATAAGACCGTGTCTGGGACAAAGGCATCGAACTGAAATTTACATGTAAGACCAC
21238998 GTCTGAGACGTCGGCATTGTATCT
63 GTCTGAGACGTCGGCATTGTATCT
* *
21239022 ATTTGCGTATAAGACTC-TGTCTGGGACAAAGGCATTGATACTG-AA-TTACATGTAAGACCACG
1 ATTTACGTATAAGAC-CGTGTCTGGGACAAAGGCATCGA-ACTGAAATTTACATGTAAGACCACG
21239084 TCTGAGACGTCGGCATTGTA
64 TCTGAGACGTCGGCATTGTA
21239104 CTTGTCTGTG
Statistics
Matches: 148, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
85 34 0.23
86 36 0.24
87 69 0.47
88 8 0.05
89 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (86 bp):
ATTTACGTATAAGACCGTGTCTGGGACAAAGGCATCGAACTGAAATTTACATGTAAGACCACGTC
TGAGACGTCGGCATTGTATCT
Found at i:21239565 original size:12 final size:13
Alignment explanation
Indices: 21239548--21239579 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
21239538 GCAAATCTTA
21239548 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
21239560 AGTTTTGATGCAT
1 AGTTTTGATGCAT
21239573 -GTTTTGA
1 AGTTTTGA
21239580 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:21240879 original size:47 final size:46
Alignment explanation
Indices: 21240826--21240969 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 46
21240816 CTAGACACGA
* * *
21240826 TCTTACACTAACTCAT-ATTTC-AAGCCGATGCCATGTCTCTGACATGG
1 TCTTACACTAACT-ATCATCTCGAAGCCGATG-CATGTCCCAGACAT-G
*
21240873 TCTTACACTAACTATCATCTCGTAGCCGATGCATGTCCCAGACATG
1 TCTTACACTAACTATCATCTCGAAGCCGATGCATGTCCCAGACATG
** * ** *
21240919 TCTTACACTGGCT-TACGTCTTTAGGCCGATGCATGTCCCAGACATG
1 TCTTACACTAACTAT-CATCTCGAAGCCGATGCATGTCCCAGACATG
21240965 TCTTA
1 TCTTA
21240970 TAGTAGCCCT
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 45 0.54
47 29 0.35
48 8 0.10
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (46 bp):
TCTTACACTAACTATCATCTCGAAGCCGATGCATGTCCCAGACATG
Found at i:21240947 original size:46 final size:45
Alignment explanation
Indices: 21240849--21241065 Score: 154
Period size: 46 Copynumber: 4.7 Consensus size: 45
21240839 CATATTTCAA
* * ** *
21240849 GCCGATGCCATGTCTCTGACATGGTCTTACACTAACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTCTC-TAG
*
21240897 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCTAG
* * * * * *
21240943 GCCGATGCATGTCCCAGACATGTCTTATAGTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GGCTTCGTCTCTAG
* * * * * *
21240989 GTCGATGCCATGTCTC-GACTTGGTCTTACA-TGGCTTTCATAATGT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-TTCGT-CTCTAG
21241035 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
21241066 AGCTCACACA
Statistics
Matches: 133, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
45 20 0.15
46 76 0.57
47 30 0.23
48 7 0.05
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCTAG
Found at i:21245660 original size:40 final size:40
Alignment explanation
Indices: 21245600--21245740 Score: 203
Period size: 40 Copynumber: 3.5 Consensus size: 40
21245590 CGGATGTAAC
* *
21245600 AACCAGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
21245640 AACCCGCACGAATACCTTCGGGACTTAACTCGGTTATTAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
21245680 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
**
21245720 AACTAGCAC-AATTGCCTTCGG
1 AACCCGCACGAA-TGCCTTCGG
21245741 ATCTTAGTTC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.02
40 88 0.98
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:21245774 original size:80 final size:80
Alignment explanation
Indices: 21245600--21245780 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
21245590 CGGATGTAAC
* *
21245600 AACCAGCACGAATGCCTTCGGGACTTAACCCAGTTATAATAACCCGCACGAATACCTTCGGGACT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATAATAACCAGCACGAATACCTTCGGGACT
**
21245665 TAACTCGGTTATTAT
66 TAACTCGAATATTAT
* * * * *
21245680 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACTAGCAC-AATTGCCTTC-GGAT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATAATAACCAGCACGAA-TACCTTCGGGA-
**
21245743 CTTAGTTCGAATA-TAGT
64 CTTAACTCGAATATTA-T
* *
21245760 AACTAGCTCAAATGCCTTCGG
1 AACCAGCACAAATGCCTTCGG
21245781 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 7 0.08
80 78 0.92
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (80 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCAGTTATAATAACCAGCACGAATACCTTCGGGACT
TAACTCGAATATTAT
Found at i:21253808 original size:37 final size:39
Alignment explanation
Indices: 21253745--21253874 Score: 171
Period size: 39 Copynumber: 3.4 Consensus size: 39
21253735 GTAACAACCA
21253745 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACC-C
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCGC
*
21253783 A-GAATACCTTCGGGACTTGAA-CCGGTTATAATAACCCGC
1 ACGAATGCCTTCGGGACTT-AACCCGGTTATAATAA-CCGC
*
21253822 ACGAATGCCTTC-GGACTTAACCCGGTTATAATAACTAGC
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAAC-CGC
21253861 AC-AATTGCCTTCGG
1 ACGAA-TGCCTTCGG
21253875 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 3, Indels: 14
0.83 0.03 0.14
Matches are distributed among these distances:
37 29 0.36
38 10 0.12
39 32 0.40
40 10 0.12
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (39 bp):
ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCGC
Found at i:21253849 original size:39 final size:40
Alignment explanation
Indices: 21253745--21253912 Score: 179
Period size: 40 Copynumber: 4.3 Consensus size: 40
21253735 GTAACAACCA
21253745 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACC--C
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGC
* *
21253783 A-GAATACCTTCGGGACTTGAA-CCGGTTATAATAACCCGC
1 ACGAATGCCTTCGGGACTT-AACCCGGTTATAATAACCAGC
*
21253822 ACGAATGCCTTC-GGACTTAACCCGGTTATAATAACTAGC
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGC
** * * *
21253861 AC-AATTGCCTTC-GGATCTTAGTCCGGATATAGTAACTAGC
1 ACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAATAACCAGC
*
21253901 ACAAATGCCTTC
1 ACGAATGCCTTC
21253913 AGATCTTAGT
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
37 31 0.27
38 7 0.06
39 36 0.32
40 38 0.33
41 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (40 bp):
ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCAGC
Found at i:21253902 original size:40 final size:40
Alignment explanation
Indices: 21253804--21253930 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
21253794 GGGACTTGAA
* ** * **
21253804 CCGGTTATAATAACCCGCACGAATGCCTTCGGA-CTTAAC
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
* *
21253843 CCGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
* *
21253883 CCGGATATAGTAACTAGCACAAATGCCTTCAGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
21253923 CCGGATAT
1 CCGGATAT
21253931 CATCCGAATA
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 29 0.38
40 48 0.62
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGT
Found at i:21261655 original size:36 final size:39
Alignment explanation
Indices: 21261554--21261657 Score: 133
Period size: 36 Copynumber: 2.7 Consensus size: 39
21261544 AGAACGAATG
*
21261554 CTTCGGGACTTAACCCGGTTAATAATAACCCGCAAGAATAC
1 CTTCGGGAC-TGACCCGGTT-ATAATAACCCGCAAGAATAC
*
21261595 CTTCGGGACTGACCCGGTTATAATAACCCGC-AGAATGC
1 CTTCGGGACTGACCCGGTTATAATAACCCGCAAGAATAC
* *
21261633 CTTC-GTACTTA-CCGGTTATAATAAC
1 CTTCGGGACTGACCCGGTTATAATAAC
21261658 TAGCATTGCC
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
36 14 0.24
37 5 0.08
38 10 0.17
39 12 0.20
40 9 0.15
41 9 0.15
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTGACCCGGTTATAATAACCCGCAAGAATAC
Found at i:21321281 original size:79 final size:81
Alignment explanation
Indices: 21321138--21321321 Score: 243
Period size: 79 Copynumber: 2.3 Consensus size: 81
21321128 GCTACTCGTT
* *
21321138 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
21321202 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* **
21321217 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
* *
21321280 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
21321297 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21321322 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
78 34 0.37
79 39 0.42
80 19 0.21
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:21321321 original size:40 final size:40
Alignment explanation
Indices: 21321119--21321321 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
21321109 TCGAATTTAA
** *
21321119 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
21321159 CCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
21321198 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
21321237 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
21321277 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
21321317 CCGGA
1 CCGGA
21321322 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:21321912 original size:21 final size:21
Alignment explanation
Indices: 21321888--21321929 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
21321878 ACCACACATA
*
21321888 AATGCA-TACATTTTACTAACT
1 AATGCATTACATATTA-TAACT
21321909 AATGCATTACATATTATAACT
1 AATGCATTACATATTATAACT
21321930 CAATACGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (21 bp):
AATGCATTACATATTATAACT
Found at i:21329444 original size:79 final size:80
Alignment explanation
Indices: 21329343--21329495 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 80
21329333 AGCCCAGTTA
* *
21329343 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
21329406 GGG-CTTAGCCTGGAAT
64 GGGACTTAGCCTGGAAT
* ** * *
21329422 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
21329487 GACTTAGCC
66 GACTTAGCC
21329496 CGGACATCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.05
79 46 0.72
80 15 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCTGGAAT
Found at i:21329499 original size:40 final size:40
Alignment explanation
Indices: 21329315--21329499 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
21329305 CTACTCGTTT
* * *
21329315 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
21329355 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
21329395 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
21329434 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
21329475 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21329500 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:21332081 original size:16 final size:16
Alignment explanation
Indices: 21332060--21332092 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
21332050 TCAAAATGGG
*
21332060 GCCAAGGCACTAGCAA
1 GCCAAGGAACTAGCAA
21332076 GCCAAGGAACTAGCAA
1 GCCAAGGAACTAGCAA
21332092 G
1 G
21332093 GAAGACTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.27, G:0.27, T:0.06
Consensus pattern (16 bp):
GCCAAGGAACTAGCAA
Found at i:21333211 original size:33 final size:33
Alignment explanation
Indices: 21333174--21333240 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
21333164 ATTTTATTGA
21333174 TAAGATTGTCGAAGACTTAGTTTTTGAAAGAGC
1 TAAGATTGTCGAAGACTTAGTTTTTGAAAGAGC
21333207 TAAGATTGTCGAAGACTTAGTTTTTGAAAGAGC
1 TAAGATTGTCGAAGACTTAGTTTTTGAAAGAGC
21333240 T
1 T
21333241 TCACACCTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (33 bp):
TAAGATTGTCGAAGACTTAGTTTTTGAAAGAGC
Found at i:21339096 original size:46 final size:46
Alignment explanation
Indices: 21339041--21339168 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
21339031 GGTTGAGCAT
* *
21339041 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
21339087 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
21339133 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
21339169 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:21348885 original size:9 final size:9
Alignment explanation
Indices: 21348871--21348897 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
21348861 GCTCCAATAA
21348871 AATTGAAAG
1 AATTGAAAG
21348880 AATTGAAAG
1 AATTGAAAG
21348889 AATTGAAAG
1 AATTGAAAG
21348898 CTCAGTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (9 bp):
AATTGAAAG
Found at i:21353372 original size:37 final size:37
Alignment explanation
Indices: 21353311--21353389 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
21353301 TTATTACGAA
* * *
21353311 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
21353348 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
21353385 GTCTT
1 GTCTT
21353390 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:21353586 original size:47 final size:47
Alignment explanation
Indices: 21353510--21353683 Score: 208
Period size: 47 Copynumber: 3.7 Consensus size: 47
21353500 CTTCGGGACT
* * * **
21353510 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGCCC
1 TATCACATATATACACTTTCACATTCATCACATCAGCCA-TTAGGCCC
* *
21353557 TGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCC
* *
21353604 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCC
* * *
21353651 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATTCATCACAT
21353684 AGAATCCTAA
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 3 0.03
47 110 0.97
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCC
Done.