Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 75 of 253
Found at i:22412861 original size:47 final size:47
Alignment explanation
Indices: 22412796--22413089 Score: 311
Period size: 47 Copynumber: 6.1 Consensus size: 47
22412786 ACACGTTTCG
* * **
22412796 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
* *
22412843 CATTGGCCATTCGACCTTATCACACATACGCATGTTCA-ATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
* * ** *
22412889 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCC-T-T-AC-C--ACACATACGCATGTTCACATTCATCA
* *
22412942 CATTGGCCATTCGGACTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
* ***
22412989 CATTGGCCATTCGGCCTTATCACACATATATATATAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTA-C-CACACATACGCAT--GTTCACATTCATCA
* * *
22413040 CATTGGCCATTCGGCCTTATCACACGTACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
22413087 CAT
1 CAT
22413090 AAAATCCTAA
Statistics
Matches: 203, Mismatches: 33, Indels: 22
0.79 0.13 0.09
Matches are distributed among these distances:
46 23 0.11
47 88 0.43
48 1 0.00
49 19 0.09
50 2 0.01
51 34 0.17
52 13 0.06
53 23 0.11
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCA
Found at i:22413059 original size:98 final size:98
Alignment explanation
Indices: 22412796--22413089 Score: 465
Period size: 98 Copynumber: 3.0 Consensus size: 98
22412786 ACACGTTTCG
*
22412796 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCAT--GTTCACATTCATCACATTGGCCATTCG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-ATAGGTTCACATTCATCACATTGGCCATTCG
*
22412856 ACCTTATCACACATACGCATGTTCA-ATTCATCA
65 GCCTTATCACACATACGCATGTTCACATTCATCA
*
22412889 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATAT--AGGTTCACATTCATCACATTGGCCATTC
*
22412954 GGACTTATCACACATACGCATGTTCACATTCATCA
64 GGCCTTATCACACATACGCATGTTCACATTCATCA
22412989 CATTGGCCATTCGGCCTTATCACACATATATATATAGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATATAGGTTCACATTCATCACATTGGCCATTCGG
* *
22413054 CCTTATCACACGTACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
22413087 CAT
1 CAT
22413090 AAAATCCTAA
Statistics
Matches: 185, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
93 18 0.10
94 1 0.01
95 10 0.05
96 1 0.01
98 63 0.34
99 50 0.27
100 42 0.23
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATATAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:22415399 original size:85 final size:85
Alignment explanation
Indices: 22415271--22415448 Score: 329
Period size: 85 Copynumber: 2.1 Consensus size: 85
22415261 ATTTAATTGT
*
22415271 CCATGCCCTTTATTTTATTAAACCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCATGCTCTTTATTTTATTAAACCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
*
22415336 AGCCATAACATCTTGTCCAC
66 AGCCATAACATCTTGCCCAC
*
22415356 CCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCATGCTCTTTATTTTATTAAACCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
22415421 AGCCATAACATCTTGCCCAC
66 AGCCATAACATCTTGCCCAC
22415441 CCATGCTC
1 CCATGCTC
22415449 ATGGCCGGCC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCATGCTCTTTATTTTATTAAACCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGCCCAC
Found at i:22434032 original size:50 final size:46
Alignment explanation
Indices: 22433928--22434032 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 46
22433918 GACAGGACAG
* * *
22433928 GACAGAAATGAGCCATGTAAGTCCATTTCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATTTCAGATATATGGCGTTGGA
22433974 GACAGGAATGAGCCATGTAAGCCCATATT-AGATATATATATGGCGTTGGA
1 GACAGGAATGAGCCATGTAAGCCCAT-TTCAG----ATATATGGCGTTGGA
22434024 GACAGGAAT
1 GACAGGAAT
22434033 AATTCATGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
46 26 0.51
47 2 0.04
50 23 0.45
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATTTCAGATATATGGCGTTGGA
Found at i:22443610 original size:12 final size:12
Alignment explanation
Indices: 22443589--22443656 Score: 57
Period size: 12 Copynumber: 5.4 Consensus size: 12
22443579 TAATAAGAAT
*
22443589 TAAAACTAATAA
1 TAAAAATAATAA
22443601 TAAAAATAATAA
1 TAAAAATAATAA
* *
22443613 -AGAAATGGATATAG
1 TAAAAAT--A-ATAA
22443627 TAAATAATAATAA
1 TAAA-AATAATAA
*
22443640 TAATAATAATAA
1 TAAAAATAATAA
22443652 TAAAA
1 TAAAA
22443657 GAAGTTGAAC
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
11 5 0.11
12 23 0.52
13 7 0.16
14 4 0.09
15 2 0.05
16 3 0.07
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.26
Consensus pattern (12 bp):
TAAAAATAATAA
Found at i:22443640 original size:6 final size:6
Alignment explanation
Indices: 22443629--22443654 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22443619 GGATATAGTA
22443629 AATAAT AATAAT AATAAT AATAAT AA
1 AATAAT AATAAT AATAAT AATAAT AA
22443655 AAGAAGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AATAAT
Found at i:22444921 original size:56 final size:56
Alignment explanation
Indices: 22444835--22444944 Score: 193
Period size: 56 Copynumber: 2.0 Consensus size: 56
22444825 ATATTCGCAT
* *
22444835 GTCAAAACTCCTCTTTCTTGTGGTCAATTCTATTATGAAAATATGGTTTGAGTCGA
1 GTCAAAACACCTCTTTCTTGCGGTCAATTCTATTATGAAAATATGGTTTGAGTCGA
*
22444891 GTCAAAACACCTCTTTCTTGCGGTCAATTCTATTATTAAAATATGGTTTGAGTC
1 GTCAAAACACCTCTTTCTTGCGGTCAATTCTATTATGAAAATATGGTTTGAGTC
22444945 AAGTAATATT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.39
Consensus pattern (56 bp):
GTCAAAACACCTCTTTCTTGCGGTCAATTCTATTATGAAAATATGGTTTGAGTCGA
Found at i:22456937 original size:17 final size:19
Alignment explanation
Indices: 22456905--22456942 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
22456895 AAACCTTCAA
22456905 TTTTCTCTTTTCTTCTTTC
1 TTTTCTCTTTTCTTCTTTC
22456924 TTTTCTC-TTT-TTCTTTC
1 TTTTCTCTTTTCTTCTTTC
22456941 TT
1 TT
22456943 CCTTCCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTCTTTTCTTCTTTC
Found at i:22463735 original size:44 final size:44
Alignment explanation
Indices: 22463687--22463794 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 44
22463677 TGATTTTGTA
* * *
22463687 TAAGACCACATCTGGGACATTGGAATTGACTTT-TGATTTACGTG
1 TAAGACCACATCTGGGACATTGGAATCGA-TTTGAGATTCACGTG
** * *
22463731 TAAGACCATTTCTGGGACGTTGGCATCGATTTGAGATTCACGTG
1 TAAGACCACATCTGGGACATTGGAATCGATTTGAGATTCACGTG
22463775 TAAGACC-CAGTCTGGGACAT
1 TAAGACCACA-TCTGGGACAT
22463795 CGGCATCATT
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 3 0.06
44 49 0.94
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (44 bp):
TAAGACCACATCTGGGACATTGGAATCGATTTGAGATTCACGTG
Found at i:22467603 original size:27 final size:28
Alignment explanation
Indices: 22467573--22467643 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 28
22467563 TATTTTAATG
*
22467573 CATGTTTTTAATATGTCATAGT-TAGTA
1 CATGTTATTAATATGTCATAGTCTAGTA
* * * *
22467600 CATGTTATTAATTTGTCTTGGTCTATTA
1 CATGTTATTAATATGTCATAGTCTAGTA
*
22467628 CATATTATTAATATGT
1 CATGTTATTAATATGT
22467644 TCTAGCTTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 18 0.50
28 18 0.50
ACGTcount: A:0.28, C:0.08, G:0.13, T:0.51
Consensus pattern (28 bp):
CATGTTATTAATATGTCATAGTCTAGTA
Found at i:22478872 original size:27 final size:27
Alignment explanation
Indices: 22478838--22479015 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
22478828 TAAATTGTAC
22478838 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22478865 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22478891 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* * *
22478919 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22478947 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22478974 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22479001 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22479016 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 104 0.83
28 21 0.17
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22478955 original size:82 final size:81
Alignment explanation
Indices: 22478839--22478994 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
22478829 AAATTGTACA
* * * *
22478839 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22478903 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22478920 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22478985 TGCGAGTTGA
65 TGCGAATTGA
22478995 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22479006 original size:82 final size:81
Alignment explanation
Indices: 22478835--22479015 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
22478825 GAGTAAATTG
* * * *
22478835 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22478900 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22478916 TGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22478980 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22478998 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22479016 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22479026 original size:27 final size:27
Alignment explanation
Indices: 22478920--22479026 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
22478910 TGACCATGCG
*
22478920 GCACTAAGTGTGCGAG-TCTAACTATGTA
1 GCACTAAGTGTGCGAGCTC-AA-TATATA
** * * **
22478948 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
22478975 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
22479002 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
22479027 CATTCGTGAA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 49 0.74
28 16 0.24
29 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:22483784 original size:20 final size:20
Alignment explanation
Indices: 22483759--22483799 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
22483749 TGATGATGAT
22483759 TGTTTGAGGTTCAGAAGTCG
1 TGTTTGAGGTTCAGAAGTCG
22483779 TGTTTGAGGTTCAGAAGTCG
1 TGTTTGAGGTTCAGAAGTCG
22483799 T
1 T
22483800 TTGTGCGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.10, G:0.34, T:0.37
Consensus pattern (20 bp):
TGTTTGAGGTTCAGAAGTCG
Found at i:22486746 original size:37 final size:40
Alignment explanation
Indices: 22486642--22486920 Score: 413
Period size: 38 Copynumber: 7.3 Consensus size: 40
22486632 AGGTTTAGCA
* * * *
22486642 GGATATATTACTAGCACGAATGCTCTTCAGAACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
*
22486682 GGATA-CT-ACTAGCACGAATGCTCCTC-GGACTTAG-CC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
22486718 GGATATATCACTAGCACGAATGCT-CTCGGGACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
22486757 GG--ATATCACTAGCAC--ATGCTCCTCGGGACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
*
22486793 GGATACATCACTAGCACGAATGCTCCTCGGGACTTAG-CC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
22486832 GG--ATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
22486870 GGATATATCACTAGCACGAATGCTCCTCGGG-CTTAGCCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
22486909 GGATATATCACT
1 GGATATATCACT
22486921 CTCAATTCTC
Statistics
Matches: 221, Mismatches: 6, Indels: 25
0.88 0.02 0.10
Matches are distributed among these distances:
35 5 0.02
36 24 0.11
37 56 0.25
38 57 0.26
39 29 0.13
40 50 0.23
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
Found at i:22486795 original size:75 final size:77
Alignment explanation
Indices: 22486642--22486914 Score: 425
Period size: 75 Copynumber: 3.6 Consensus size: 77
22486632 AGGTTTAGCA
* * * *
22486642 GGATATATTACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATA-CTACTAGCACGAATGCTCC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATC-ACTAGCAC-AATGCTCC
22486706 TC-GGACTTAG-CC
64 TCGGGACTTAGCCC
22486718 GGATATATCACTAGCACGAATGCT-CTCGGGACTTAGCCCGGATATCACTAGCAC-ATGCTCCTC
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATCACTAGCACAATGCTCCTC
22486781 GGGACTTAGCCC
66 GGGACTTAGCCC
*
22486793 GGATACATCACTAGCACGAATGCTCCTCGGGACTTAG-CCGGATATCACTAGCACGAATGCTCCT
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATCACTAGCAC-AATGCTCCT
22486857 CGGGACTTAGCCC
65 CGGGACTTAGCCC
22486870 GGATATATCACTAGCACGAATGCTCCTCGGG-CTTAGCCCGGATAT
1 GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
22486915 ATCACTCTCA
Statistics
Matches: 184, Mismatches: 6, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
73 9 0.05
74 8 0.04
75 67 0.36
76 41 0.22
77 59 0.32
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (77 bp):
GGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATCACTAGCACAATGCTCCTC
GGGACTTAGCCC
Found at i:22488784 original size:36 final size:37
Alignment explanation
Indices: 22488724--22488801 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
22488714 TTATTACGAA
* *
22488724 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
22488761 GTCTTA-CCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGAAGTCATCGG
22488797 GTCTT
1 GTCTT
22488802 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 1 0.03
36 30 0.81
37 6 0.16
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:22489036 original size:47 final size:47
Alignment explanation
Indices: 22488930--22489814 Score: 1455
Period size: 47 Copynumber: 19.1 Consensus size: 47
22488920 ATCATTTATG
* * * * * * *
22488930 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATAT-TA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
22488976 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489023 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489070 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
22489119 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
22489166 CACTTTCACATTCATCACATCGG-C--TAGACCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
22489212 CAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
22489258 CACTTTCACATTCATCACAT---CCATTAGGCCTTATTACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489302 CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
22489348 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
22489395 CACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489441 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
22489488 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489535 CACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489581 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489628 CACTTTCACATTCATCACATCGG-CATTAGGCCTTATCAC--ATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
22489672 CACTTTCACATTCATCACATCGG-CATTAGGCCTTA--ACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489716 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
22489765 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22489811 CACT
1 CACT
22489815 GTCTTGGCTG
Statistics
Matches: 796, Mismatches: 21, Indels: 44
0.92 0.02 0.05
Matches are distributed among these distances:
42 2 0.00
44 123 0.15
45 31 0.04
46 217 0.27
47 318 0.40
48 12 0.02
49 93 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:22489411 original size:93 final size:93
Alignment explanation
Indices: 22488930--22489814 Score: 1447
Period size: 93 Copynumber: 9.5 Consensus size: 93
22488920 ATCATTTATG
* * * * * * *
22488930 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATAT-TACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22488994 ATCGGCCATTAGGCCTTATCGCATATATA
66 ATCGG-CATTAGGCCTTATCACATATATA
22489023 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489088 ATCGGCCATTAGGCCTTATCACATATATATA
66 ATCGG-CATTAGGCCTTATCAC--ATATATA
22489119 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22489184 ATCGGC--TAGACCTTATCACATATATATA
66 ATCGGCATTAGGCCTTATCAC--ATATATA
22489212 CAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22489276 ATC--CATTAGGCCTTATTACATATATA
66 ATCGGCATTAGGCCTTATCACATATATA
22489302 CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489366 ATCGGCTATTAGGCCTTATCACATATATA
66 ATCGGC-ATTAGGCCTTATCACATATATA
*
22489395 CACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489459 ATCGGCCATTAGGCCTTATCACATATATA
66 ATCGG-CATTAGGCCTTATCACATATATA
* *
22489488 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489553 ATCGGCATTAGGCCTTATCACATATATA
66 ATCGGCATTAGGCCTTATCACATATATA
22489581 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489646 ATCGGCATTAGGCCTTATCAC--ATATA
66 ATCGGCATTAGGCCTTATCACATATATA
*
22489672 CACTTTCACATTCATCACATCGG-CATTAGGCCTTA--ACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489734 ATCGGCCATTAGGCCTTATCACATATATATA
66 ATCGG-CATTAGGCCTTATCAC--ATATATA
22489765 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATACACT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
22489815 GTCTTGGCTG
Statistics
Matches: 754, Mismatches: 18, Indels: 38
0.93 0.02 0.05
Matches are distributed among these distances:
88 31 0.04
89 16 0.02
90 53 0.07
91 61 0.08
92 89 0.12
93 316 0.42
94 99 0.13
95 10 0.01
96 79 0.10
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (93 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCATTAGGCCTTATCACATATATA
Found at i:22489534 original size:140 final size:140
Alignment explanation
Indices: 22488930--22489814 Score: 1465
Period size: 140 Copynumber: 6.4 Consensus size: 140
22488920 ATCATTTATG
* * * * * * *
22488930 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATAT-TACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22488994 ATCGGCCATTAGGCCTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
22489059 TCACATATATA
130 TCACATATATA
22489070 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
*
22489135 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG-C--TAGACCT
64 ACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
22489197 TATCACATATATATA
128 TATCAC--ATATATA
22489212 CAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22489276 ATC--CATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
22489339 -ACATATATA
131 CACATATATA
*
22489348 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22489413 ATCGGCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
22489478 CACATATATA
131 CACATATATA
* *
22489488 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
22489553 ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
22489618 CACATATATA
131 CACATATATA
22489628 CACTTTCACATTCATCACATCGG-CATTAGGCCTTATCAC--ATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
22489690 ATCGGCATTAGGCCTTA--ACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
22489753 CACATATATATA
131 CAC--ATATATA
22489765 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATACACT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
22489815 GTCTTGGCTG
Statistics
Matches: 711, Mismatches: 18, Indels: 33
0.93 0.02 0.04
Matches are distributed among these distances:
135 48 0.07
136 55 0.08
137 134 0.19
138 18 0.03
139 119 0.17
140 215 0.30
141 36 0.05
142 15 0.02
143 71 0.10
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATA
Found at i:22492852 original size:100 final size:100
Alignment explanation
Indices: 22492674--22492881 Score: 371
Period size: 100 Copynumber: 2.1 Consensus size: 100
22492664 AATGTTATAA
* * * *
22492674 TTCAGTCCGAAAGCTTTTCTTTTCCCTGATCACGATCGATTCCATGCCTTTTTTGATCTATAACA
1 TTCAATCCGAAAGCTTTTCTTTTCCCCGATCACGATCGATTCCACGCCTTTCTTGATCTATAACA
22492739 ACACATTTAGCTCATTTAAGACTCATACTATTTAT
66 ACACATTTAGCTCATTTAAGACTCATACTATTTAT
*
22492774 TTCAATCCGAAAGCTTTTCTTTTCCCCGATCACGATCGATTCCACGCCTTTCTTGATCTATAGCA
1 TTCAATCCGAAAGCTTTTCTTTTCCCCGATCACGATCGATTCCACGCCTTTCTTGATCTATAACA
22492839 ACACATTTAGCTCATTTAAGACTCATACTATTTAT
66 ACACATTTAGCTCATTTAAGACTCATACTATTTAT
22492874 TTCAATCC
1 TTCAATCC
22492882 AAAAATCACA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 103 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (100 bp):
TTCAATCCGAAAGCTTTTCTTTTCCCCGATCACGATCGATTCCACGCCTTTCTTGATCTATAACA
ACACATTTAGCTCATTTAAGACTCATACTATTTAT
Found at i:22494568 original size:9 final size:9
Alignment explanation
Indices: 22494554--22494584 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22494544 CATTACTTCT
22494554 TCTTCTCTC
1 TCTTCTCTC
22494563 TCTTCTCTC
1 TCTTCTCTC
*
22494572 TCTTCTTTC
1 TCTTCTCTC
22494581 TCTT
1 TCTT
22494585 TTCTTTGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (9 bp):
TCTTCTCTC
Found at i:22495871 original size:22 final size:23
Alignment explanation
Indices: 22495843--22495885 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
22495833 TATCCCCACA
*
22495843 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGCTAGATGGAG
22495865 TGGAGTGTAGAGGCTAGATGG
1 TGGAGTGTAGAGGCTAGATGG
22495886 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.05, G:0.51, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGCTAGATGGAG
Found at i:22503283 original size:17 final size:18
Alignment explanation
Indices: 22503261--22503294 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22503251 TTCTAAGCTA
22503261 TGTGGG-CCACATGGGCG
1 TGTGGGCCCACATGGGCG
22503278 TGTGGGCCCACATGGGC
1 TGTGGGCCCACATGGGC
22503295 CCGTATTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
TGTGGGCCCACATGGGCG
Found at i:22513643 original size:13 final size:13
Alignment explanation
Indices: 22513625--22513656 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
22513615 CCCTGTGAGA
22513625 CACACGGCTGGGC
1 CACACGGCTGGGC
*
22513638 CACACGGTTGGGC
1 CACACGGCTGGGC
22513651 CACACG
1 CACACG
22513657 AGTGTGTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.38, G:0.34, T:0.09
Consensus pattern (13 bp):
CACACGGCTGGGC
Found at i:22516710 original size:53 final size:52
Alignment explanation
Indices: 22516533--22516734 Score: 181
Period size: 55 Copynumber: 3.8 Consensus size: 52
22516523 AGGGTTTAAG
* * ** *
22516533 GATACCACGTAAGACCATGCCAAGGCATGGAAATTTTTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-G-TTCATAAGG-AAA
* * * * *
22516588 GATATCATGTAGGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-C-ATAAGG-AAA
* * *
22516643 GTTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAA
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGAAA
* * *
22516695 TGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAA
1 -GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAA
22516735 AGTACCCGTG
Statistics
Matches: 120, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
52 5 0.04
53 41 0.34
54 7 0.06
55 67 0.56
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (52 bp):
GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGAAA
Found at i:22520340 original size:30 final size:30
Alignment explanation
Indices: 22520306--22520366 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
22520296 TTCCCGAGCC
22520306 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
22520336 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
22520366 T
1 T
22520367 GATTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:22521144 original size:68 final size:66
Alignment explanation
Indices: 22521072--22521243 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
22521062 CATCATGTGT
* * * *
22521072 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
22521135 TGTAG
62 TGTAG
** * *
22521140 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
22521205 AG
65 AG
* * * *
22521207 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
22521244 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:22521177 original size:64 final size:64
Alignment explanation
Indices: 22521096--22521277 Score: 199
Period size: 67 Copynumber: 2.8 Consensus size: 64
22521086 AGACATTATG
* * *
22521096 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
22521160 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
22521225 AA
63 AA
* * *
22521227 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGA
22521278 CCCGAACTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 21 0.22
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:22527787 original size:55 final size:54
Alignment explanation
Indices: 22527709--22527963 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
22527699 ATTAGGGTTT
*
22527709 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
22527764 AAGGATATCAAGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * * *
22527819 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGG-AATTGGTGAG-TTCATAAGGT
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
22527872 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAG-TTCTAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * * *
22527921 AAGGATATCACGTAAGACCATGACAAGTCAAGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
22527964 GTACCCATGT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 37 0.22
52 8 0.05
53 41 0.24
54 10 0.06
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:22527915 original size:108 final size:109
Alignment explanation
Indices: 22527716--22527924 Score: 298
Period size: 108 Copynumber: 1.9 Consensus size: 109
22527706 TTTAAGGATA
* *
22527716 CCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCAAGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCAAGTAAGA
* *
22527781 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTT-CTAAAAGGCAAAGGTC
* * *
22527826 CCATGTAAGACCATGCCAAGGCATGG-AATTGGTGA-G-TTCATAAGGTAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCAAGTAAG
* *
22527888 ACCATGTCGAGACATGGCAATGGTAAGTTCTAAAAGG
65 ACCATGTCAAGACATGGCAATGATAAGTTCTAAAAGG
22527925 ATATCACGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
107 10 0.11
108 46 0.52
109 8 0.09
110 25 0.28
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCAAGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTCTAAAAGGCAAAGGTC
Found at i:22528175 original size:16 final size:16
Alignment explanation
Indices: 22528154--22528184 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22528144 ATAAATTTGA
22528154 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
22528170 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
22528185 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:22531549 original size:40 final size:40
Alignment explanation
Indices: 22531493--22531754 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
22531483 TATTCGGATG
22531493 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22531533 GTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22531573 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22531613 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22531653 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
22531693 ATAACCAGGCTAAATCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
22531733 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
22531755 TACTTGGTTT
Statistics
Matches: 206, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 16 0.08
40 190 0.92
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22535317 original size:29 final size:29
Alignment explanation
Indices: 22535254--22535321 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
22535244 TAATCAACCA
22535254 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
22535283 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
22535312 CGCACACTTA
1 CGCACACTTA
22535322 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:22535462 original size:29 final size:30
Alignment explanation
Indices: 22535423--22535501 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22535413 CTTAATAATC
22535423 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
22535453 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
22535482 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22535502 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:22543123 original size:40 final size:40
Alignment explanation
Indices: 22543059--22543316 Score: 376
Period size: 40 Copynumber: 6.5 Consensus size: 40
22543049 CGGATGATAA
* * * *
22543059 CCGGGCTAAGTCCCAAAGGTATTTGTGTGAGTTACTATAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22543099 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22543139 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22543179 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22543219 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
22543259 CCGGGCTAAATCCCAAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
22543299 CC-GGCTAATTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22543317 TACTTGGTTT
Statistics
Matches: 200, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 16 0.08
40 184 0.92
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22546764 original size:25 final size:24
Alignment explanation
Indices: 22546729--22546780 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
22546719 AAGTTCAAGC
22546729 GAGCCATATCAGGAAGCTCACAAA
1 GAGCCATATCAGGAAGCTCACAAA
* *
22546753 GAGCCTATATCAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCACAAA
22546778 GAG
1 GAG
22546781 TTGCATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCACAAA
Found at i:22553735 original size:48 final size:48
Alignment explanation
Indices: 22553632--22553877 Score: 206
Period size: 48 Copynumber: 5.1 Consensus size: 48
22553622 ATGTGAGTAT
* ** * * * * *
22553632 TGAGATCCCGTATAAGATGATATCTGGGGTATGGCATCAAAATTGAGA
1 TGAGATCCCATATAAGACCATATCTGGGATATGGCATCGACATCGATA
* * *
22553680 TGAGATCCCTTGTAAGATCATATCTGGGATATGGCATCGACATCGATA
1 TGAGATCCCATATAAGACCATATCTGGGATATGGCATCGACATCGATA
* * ** * *
22553728 AGTGATCCCATATAAGACCACGTTTGGGACATGGCATCGACATC-AGTA
1 TGAGATCCCATATAAGACCATATCTGGGATATGGCATCGACATCGA-TA
* * * * *
22553776 TGAGATCCCATGTAAAACCATATCTGGAATATGGCATTGGCATCGATA
1 TGAGATCCCATATAAGACCATATCTGGGATATGGCATCGACATCGATA
* * * * * * * *
22553824 TGAGGTCCCGTATAAGACCATGTCTAGGACATGGCATCGGCACCGTTA
1 TGAGATCCCATATAAGACCATATCTGGGATATGGCATCGACATCGATA
22553872 TGAGAT
1 TGAGAT
22553878 TTCGTGAAAG
Statistics
Matches: 156, Mismatches: 40, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 154 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (48 bp):
TGAGATCCCATATAAGACCATATCTGGGATATGGCATCGACATCGATA
Found at i:22553877 original size:96 final size:96
Alignment explanation
Indices: 22553679--22553862 Score: 251
Period size: 96 Copynumber: 1.9 Consensus size: 96
22553669 CAAAATTGAG
* * * * *
22553679 ATGAGATCCCTTGTAAGATCATATCTGGGATATGGCATCGACATCGATAAGTGATCCCATATAAG
1 ATGAGATCCCATGTAAAACCATATCTGGAATATGGCATCGACATCGATAAGAGATCCCATATAAG
* *
22553744 ACCACGTTTGGGACATGGCATCGACATCAGT
66 ACCACGTCTAGGACATGGCATCGACATCAGT
* * * * *
22553775 ATGAGATCCCATGTAAAACCATATCTGGAATATGGCATTGGCATCGATATGAGGTCCCGTATAAG
1 ATGAGATCCCATGTAAAACCATATCTGGAATATGGCATCGACATCGATAAGAGATCCCATATAAG
*
22553840 ACCATGTCTAGGACATGGCATCG
66 ACCACGTCTAGGACATGGCATCG
22553863 GCACCGTTAT
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (96 bp):
ATGAGATCCCATGTAAAACCATATCTGGAATATGGCATCGACATCGATAAGAGATCCCATATAAG
ACCACGTCTAGGACATGGCATCGACATCAGT
Found at i:22560778 original size:46 final size:46
Alignment explanation
Indices: 22560709--22560973 Score: 215
Period size: 46 Copynumber: 5.7 Consensus size: 46
22560699 TGGGCATCTA
* *
22560709 AACTCATTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTG
* * * *
22560755 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CTG
*
22560802 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTG
* * * *
22560848 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CTG
* ** *
22560895 AACTTGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACG-CTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCT-G
* *
22560941 AGCTCGTTGAGTTGTGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22560974 GCGGGTTACA
Statistics
Matches: 173, Mismatches: 27, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
42 4 0.02
43 10 0.06
45 9 0.05
46 78 0.45
47 52 0.30
48 7 0.04
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTG
Found at i:22560860 original size:93 final size:93
Alignment explanation
Indices: 22560701--22560965 Score: 413
Period size: 93 Copynumber: 2.8 Consensus size: 93
22560691 AGGATATTTG
* * * *
22560701 GGCATCTAAACTCATTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGCCTGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
22560766 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
22560794 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
22560859 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * ** * * *
22560887 GGCATCCGAACTTGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
22560952 TTGTGTCCGAGTTC
66 TTGAGTCCGAGTTC
22560966 ACTTATGGGC
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 159 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:22560919 original size:47 final size:47
Alignment explanation
Indices: 22560754--22560911 Score: 191
Period size: 47 Copynumber: 3.4 Consensus size: 47
22560744 GCGAATGCCT
* *
22560754 GAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
* * *
22560801 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
22560847 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
*
22560894 GAACTTGTTGAGTTGAGT
1 GAACTCGTTGAGTTGAGT
22560912 TTGAGTTCAC
Statistics
Matches: 93, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 27 0.29
47 44 0.47
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
Found at i:22570835 original size:38 final size:38
Alignment explanation
Indices: 22570793--22570865 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
22570783 GAACTCCTTC
22570793 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTG
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTG
*
22570831 CTCCTTCCTTAGAATTTTCGGCCAAAGGAAATGAA
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
22570866 AAAGGATGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (38 bp):
CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTG
Found at i:22575710 original size:41 final size:39
Alignment explanation
Indices: 22575552--22575729 Score: 166
Period size: 38 Copynumber: 4.5 Consensus size: 39
22575542 AATCAAGCAT
* ** * * *
22575552 CTTCGGG-TTTAGCCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
* * * * *
22575589 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTT-AGCCGGATATAGTCGCTAGCACAAATGC
22575629 CTTCGGGACTTAGCC-GATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
* *
22575667 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAG-CCGGATATAGTCGC-TAGCACAAATGC
22575708 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATAT
22575730 CATTCGAGTA
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
37 10 0.09
38 31 0.27
39 21 0.18
40 24 0.21
41 27 0.23
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
Found at i:22577548 original size:24 final size:24
Alignment explanation
Indices: 22577513--22577560 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
22577503 GTACCAGGAA
22577513 CTACTCCAATTTCGATAGCTCCGT
1 CTACTCCAATTTCGATAGCTCCGT
*
22577537 CTACTCCGATTTCGATAGCTCCGT
1 CTACTCCAATTTCGATAGCTCCGT
22577561 GTAGAATGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (24 bp):
CTACTCCAATTTCGATAGCTCCGT
Found at i:22579684 original size:46 final size:48
Alignment explanation
Indices: 22579567--22579740 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 48
22579557 AACCCGCCCC
* *
22579567 TAAGTGAACTCGGACTCAACTCAACGAGCTC-G--G-C-GTTCGCATCCA
1 TAAG-GAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
*
22579612 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 T-AAGGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
22579660 TCA-GAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
22579704 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAG-GAACTCGGACTCAACTCAACGAGTTCGGATGC
22579741 TCAACCATCC
Statistics
Matches: 108, Mismatches: 7, Indels: 24
0.78 0.05 0.17
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 26 0.24
46 61 0.56
47 1 0.01
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (48 bp):
TAAGGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:22579728 original size:92 final size:91
Alignment explanation
Indices: 22579572--22579740 Score: 293
Period size: 92 Copynumber: 1.8 Consensus size: 91
22579562 GCCCCTAAGT
*
22579572 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
22579637 GAGTTCGGATGCCTAGTTACATCTCA
66 GAGTTCGGATGCCTAGTTACATCTCA
* * *
22579663 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
22579728 CGAGTTCGGATGC
65 CGAGTTCGGATGC
22579741 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 27 0.37
92 46 0.63
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:22584140 original size:36 final size:38
Alignment explanation
Indices: 22584100--22584172 Score: 114
Period size: 36 Copynumber: 1.9 Consensus size: 38
22584090 AGAACTCCTT
*
22584100 CTCCTTCCTTATGAA-TTTCGGCCAAA-GAAATGAATG
1 CTCCTTCCTTAAGAATTTTCGGCCAAAGGAAATGAATG
22584136 CTCCTTCCTTAAGAATTTTTCGGCCAAAGGAAATGAA
1 CTCCTTCCTTAAGAA-TTTTCGGCCAAAGGAAATGAA
22584173 AAAAGAGTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 14 0.42
38 11 0.33
39 8 0.24
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (38 bp):
CTCCTTCCTTAAGAATTTTCGGCCAAAGGAAATGAATG
Found at i:22588800 original size:43 final size:40
Alignment explanation
Indices: 22588636--22588860 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
22588626 AAACCAAGTA
* * *
22588636 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATG
* * * * *
22588675 CCTTCGGGACTTAACCCGGATATAGTACCTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATG
* * ** * *
22588715 CCTTCGAGTCTTAGCCCAAAAATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTTGCACAAATG
* *
22588755 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACT--T-GCACAAATG
*
22588798 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATG
22588838 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
22588861 CATCCGAATA
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.08
40 103 0.67
41 1 0.01
43 36 0.24
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATG
Found at i:22588838 original size:83 final size:80
Alignment explanation
Indices: 22588636--22588860 Score: 272
Period size: 83 Copynumber: 2.8 Consensus size: 80
22588626 AAACCAAGTA
* * * * *
22588636 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
22588700 TACCTCGCACACATG
66 AACCTCGCACAAATG
* * ** * * *
22588715 CCTTCGAGTCTTAGCCCAAAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
22588780 CAACTACTCGTACAAATG
66 -AAC--CTCGCACAAATG
*
22588798 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
22588861 CATCCGAATA
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
79 11 0.09
80 41 0.34
81 2 0.02
83 65 0.55
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AACCTCGCACAAATG
Found at i:22596094 original size:28 final size:28
Alignment explanation
Indices: 22596029--22596152 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
22596019 GAGATTGGCG
* * * *
22596029 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
22596058 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
22596086 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
22596114 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
22596142 CTGAGAGTGCG
1 CTAAGTGTGCG
22596153 GACTTAATAT
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 73 0.83
29 15 0.17
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:22598537 original size:29 final size:29
Alignment explanation
Indices: 22598455--22598565 Score: 116
Period size: 29 Copynumber: 3.8 Consensus size: 29
22598445 AGTTTCATTT
* *
22598455 ATATGGCCCATCAGG-CTAAATTCACATTC
1 ATATGGCCCATCAGGCCCAAA-TCATATTC
* *
22598484 ATATGGCCCATCAGGCCGAATTCATATTC
1 ATATGGCCCATCAGGCCCAAATCATATTC
* * *
22598513 ATATGGCCCATTAGGCCCAAATCATCTTT
1 ATATGGCCCATCAGGCCCAAATCATATTC
* * *
22598542 ATATGACCCGTTAGGCCCAAATCA
1 ATATGGCCCATCAGGCCCAAATCA
22598566 CCTTATATTC
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 68 0.96
30 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAAATCATATTC
Found at i:22605896 original size:35 final size:35
Alignment explanation
Indices: 22605850--22605921 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
22605840 GCACCACTGG
22605850 TAGGCTTCTTCCCTAAGTAGTGACACGGCTCCTTT
1 TAGGCTTCTTCCCTAAGTAGTGACACGGCTCCTTT
22605885 TAGGCTTCTTCCCTAAGTAGTGACACGGCTCCTTT
1 TAGGCTTCTTCCCTAAGTAGTGACACGGCTCCTTT
22605920 TA
1 TA
22605922 ACTTTTGTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (35 bp):
TAGGCTTCTTCCCTAAGTAGTGACACGGCTCCTTT
Found at i:22611227 original size:13 final size:13
Alignment explanation
Indices: 22611209--22611234 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22611199 AAGAAATCGT
22611209 ACACGGGCGTGTC
1 ACACGGGCGTGTC
22611222 ACACGGGCGTGTC
1 ACACGGGCGTGTC
22611235 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:22613503 original size:34 final size:34
Alignment explanation
Indices: 22613427--22613503 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 34
22613417 GATTGCATTT
* * *
22613427 CTGTTACAGCTACTGTAATGGGCTAAGGCTCACA
1 CTGTTACTGATACTGTAATGGGCTAAGGCTCAAA
* * *
22613461 TTGCTACTGATACTGTATTGGGCTAAGGC-CATAA
1 CTGTTACTGATACTGTAATGGGCTAAGGCTCA-AA
22613495 CTGTTACTG
1 CTGTTACTG
22613504 GACTGTTACT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
33 2 0.06
34 32 0.94
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (34 bp):
CTGTTACTGATACTGTAATGGGCTAAGGCTCAAA
Found at i:22614822 original size:22 final size:23
Alignment explanation
Indices: 22614797--22614839 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
22614787 GAAAATTTTT
22614797 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
22614819 AATTTTGATTAATTTTGATAA
1 AATTTTAATTAATTTTGATAA
22614840 ATTTCGGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:22617035 original size:6 final size:6
Alignment explanation
Indices: 22617021--22617059 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
22617011 TAAAATAGAA
*
22617021 TTTATT TTTACT TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
22617060 TTCAAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:22622330 original size:47 final size:48
Alignment explanation
Indices: 22622261--22622388 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 48
22622251 GTATAATGCT
* *
22622261 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-TC-ATCAAGT-C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACGATC-AGTCC
* *
22622308 GATGCCATTTCCCAGACATGGTCTTACACTAGCTCTCACGTATCAGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACG-ATCAGT-CC
22622358 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
22622389 ACACATCACG
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
46 1 0.01
47 33 0.47
48 3 0.04
49 3 0.04
50 30 0.43
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGATCAGTCC
Found at i:22622372 original size:50 final size:47
Alignment explanation
Indices: 22622261--22622388 Score: 161
Period size: 50 Copynumber: 2.7 Consensus size: 47
22622251 GTATAATGCT
* *
22622261 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATTCATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAGTCATCAAGTC
* *
22622308 GATGCCATTTCCCAGACATGGTCTTACACTAGCTCTCACGT-ATC-AGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCA-GTCATCAAGT--C
22622358 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
22622389 ACACATCACG
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
47 28 0.39
48 4 0.06
49 8 0.11
50 31 0.44
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAGTCATCAAGTC
Found at i:22630897 original size:42 final size:42
Alignment explanation
Indices: 22630772--22630941 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 42
22630762 GGGATTTTCG
*
22630772 ATATGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATC
1 ATATTTGATTTCATGTAAGACC-CTGTCTGGGACATTGGCATC
* *
22630814 GAT-TTGAGATTTACATGTAAGACCATGTCTGGGACATTGGCATC
1 -ATATT-TGATTT-CATGTAAGACCCTGTCTGGGACATTGGCATC
* * *
22630858 ATATTTGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATCC
1 ATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCAT-C
* * * * * *
22630901 TTATTTGATTACATGTGAGACCATATCTGGGACGTTGGCAT
1 ATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCAT
22630942 TATACGAGCT
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 27 0.26
43 47 0.45
44 31 0.30
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
ATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCATC
Found at i:22630922 original size:43 final size:42
Alignment explanation
Indices: 22630772--22630929 Score: 147
Period size: 44 Copynumber: 3.7 Consensus size: 42
22630762 GGGATTTTCG
* * * * *
22630772 ATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
1 ATATTTGATTACATGTAAGACCATGTCTGAGACAGTGGCATC
* * *
22630814 GAT-TTGAGATTTACATGTAAGACCATGTCTGGGACATTGGCATC
1 -ATATT-TGA-TTACATGTAAGACCATGTCTGAGACAGTGGCATC
* * *
22630858 ATATTTGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATCC
1 ATATTTGATTACATGTAAGACCATGTCTGAGACAGTGGCAT-C
* * *
22630901 TTATTTGATTACATGTGAGACCATATCTG
1 ATATTTGATTACATGTAAGACCATGTCTG
22630930 GGACGTTGGC
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.31
43 32 0.34
44 34 0.36
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
ATATTTGATTACATGTAAGACCATGTCTGAGACAGTGGCATC
Found at i:22633419 original size:27 final size:27
Alignment explanation
Indices: 22633236--22633417 Score: 256
Period size: 27 Copynumber: 6.7 Consensus size: 27
22633226 TGGATAAGTT
*
22633236 GTAGAATTACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
22633263 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
22633290 GTAGAATTACTGAAATCCCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
22633317 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
22633344 ATAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
22633371 GTAGAAATACTAAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
22633398 GTAGAATTACCGAGATACCC
1 GTAGAATTACTGAAATACCC
22633418 TTCTGGGGTA
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:22633561 original size:31 final size:31
Alignment explanation
Indices: 22633526--22633586 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
22633516 CGTGGATTTA
*
22633526 TGTTAGTTATCGTTAATTCGTAAGTCTAATG
1 TGTTAGTTATCGTTAATTCGTAAGTATAATG
22633557 TGTTAGTTATCGTTAATTCGTAAGTATAAT
1 TGTTAGTTATCGTTAATTCGTAAGTATAAT
22633587 TCGTAAGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (31 bp):
TGTTAGTTATCGTTAATTCGTAAGTATAATG
Found at i:22633588 original size:13 final size:13
Alignment explanation
Indices: 22633570--22633599 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22633560 TAGTTATCGT
22633570 TAATTCGTAAGTA
1 TAATTCGTAAGTA
*
22633583 TAATTCGTAAGTC
1 TAATTCGTAAGTA
22633596 TAAT
1 TAAT
22633600 GTGTTAGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (13 bp):
TAATTCGTAAGTA
Found at i:22650978 original size:40 final size:40
Alignment explanation
Indices: 22650902--22650992 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 40
22650892 TAACTCATTC
* * *
22650902 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
** *
22650942 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
*
22650982 AAGGCCTTCGG
1 AATGCCTTCGG
22650993 ACCTTAGTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
Found at i:22652071 original size:13 final size:13
Alignment explanation
Indices: 22652053--22652077 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22652043 AGGATGAGCA
22652053 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
22652066 TTTTTTTTCTTT
1 TTTTTTTTCTTT
22652078 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:22657878 original size:93 final size:93
Alignment explanation
Indices: 22657763--22657933 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
22657753 GCCCATAAGT
* *
22657763 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22657828 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
22657856 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22657921 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22657934 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:22657930 original size:46 final size:46
Alignment explanation
Indices: 22657755--22657930 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
22657745 TGTAACCTGC
* * *
22657755 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
22657801 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
22657851 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
22657894 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22657931 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:22659506 original size:17 final size:16
Alignment explanation
Indices: 22659484--22659515 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
22659474 TATAAACACC
22659484 TATTATTTTTATTTTTT
1 TATTA-TTTTATTTTTT
22659501 TATTATTTTATTTTT
1 TATTATTTTATTTTT
22659516 ATCTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TATTATTTTATTTTTT
Found at i:22659508 original size:11 final size:12
Alignment explanation
Indices: 22659486--22659527 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
22659476 TAAACACCTA
22659486 TTATTT-TTATT
1 TTATTTATTATT
22659497 TT-TTTATTATT
1 TTATTTATTATT
22659508 TTATTT-TTATCT
1 TTATTTATTAT-T
22659520 TTATTTAT
1 TTATTTAT
22659528 ATGTTGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 3 0.11
11 13 0.48
12 10 0.37
13 1 0.04
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (12 bp):
TTATTTATTATT
Found at i:22668501 original size:27 final size:27
Alignment explanation
Indices: 22668471--22668648 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
22668461 ATATTGAGTC
* * * *
22668471 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
22668498 CGCACACTTATTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22668525 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22668553 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22668580 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22668607 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22668634 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22668649 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22676681 original size:27 final size:27
Alignment explanation
Indices: 22676651--22676828 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22676641 ATATTGAGTC
* * *
22676651 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
22676678 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
22676705 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** * *
22676733 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
22676760 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
22676787 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
22676814 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22676829 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:22676790 original size:82 final size:81
Alignment explanation
Indices: 22676671--22676827 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 81
22676661 GTGCTATATA
* *
22676671 ATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
22676736 ACACTTAGTGCCGCATG
65 ACACTTAGTGCCGCATG
* * **
22676753 ATCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 ATCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGC
22676817 ACACTTAGTGC
65 ACACTTAGTGC
22676828 TGTACAATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
ATCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATG
Found at i:22682109 original size:41 final size:41
Alignment explanation
Indices: 22682045--22682221 Score: 246
Period size: 41 Copynumber: 4.3 Consensus size: 41
22682035 GTGATTTGAC
* * * * *
22682045 ATAGCTTCAGATATATATGGCACTTAGTGTGCGAGATCGAG
1 ATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAG
22682086 ATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAG
1 ATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAG
* * * *
22682127 ATAGCTTCGACTACATCTAGCACTTAGTGTGCGAGATTGAG
1 ATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAG
* * *
22682168 ATAGCTTCGACTATATATGGCACTTAGTGTGCAAGATCGAG
1 ATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAG
22682209 ATAGCTTCGGCTA
1 ATAGCTTCGGCTA
22682222 TGTACGACAC
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 121 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (41 bp):
ATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAG
Found at i:22682160 original size:82 final size:82
Alignment explanation
Indices: 22682064--22682217 Score: 272
Period size: 82 Copynumber: 1.9 Consensus size: 82
22682054 GATATATATG
*
22682064 GCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAGAT
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCGACTACATATAGCACTTAGTGTGCAAGATCGAGAT
22682129 AGCTTCGACTACATCTA
66 AGCTTCGACTACATCTA
* * *
22682146 GCACTTAGTGTGCGAGATTGAGATAGCTTCGACTATATATGGCACTTAGTGTGCAAGATCGAGAT
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCGACTACATATAGCACTTAGTGTGCAAGATCGAGAT
22682211 AGCTTCG
66 AGCTTCG
22682218 GCTATGTACG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 68 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (82 bp):
GCACTTAGTGTGCGAGATCGAGATAGCTTCGACTACATATAGCACTTAGTGTGCAAGATCGAGAT
AGCTTCGACTACATCTA
Found at i:22682233 original size:82 final size:81
Alignment explanation
Indices: 22682064--22682245 Score: 267
Period size: 82 Copynumber: 2.2 Consensus size: 81
22682054 GATATATATG
*
22682064 GCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTACATATAGCACTTAGTGTGCAAGATCGAGAT
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCGACTACATATAGCACTTAGTGTGCAAGATCGAGAT
22682129 AGCTTCGACTACATCTA
66 AGCTTCGACTA-ATCTA
* * *
22682146 GCACTTAGTGTGCGAGATTGAGATAGCTTCGACTATATATGGCACTTAGTGTGCAAGATCGAGAT
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCGACTACATATAGCACTTAGTGTGCAAGATCGAGAT
* *
22682211 AGCTTCGGCT-ATGTA
66 AGCTTCGACTAATCTA
*
22682226 CGACACTTAGTGTGTGAGAT
1 -G-CACTTAGTGTGCGAGAT
22682246 ATTAAGTATT
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
80 4 0.04
81 1 0.01
82 86 0.95
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (81 bp):
GCACTTAGTGTGCGAGATCGAGATAGCTTCGACTACATATAGCACTTAGTGTGCAAGATCGAGAT
AGCTTCGACTAATCTA
Found at i:22684346 original size:43 final size:43
Alignment explanation
Indices: 22684299--22684453 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 43
22684289 TTATCGAGAT
* *
22684299 GATTACATGTAAGACCATGTCTGGGACATTAGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * * *
22684342 GATTACGTGTAAGGCCATGTCTGGGTCATTGGCATCGTTAATCA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGA
*** * * *
22684386 -ATTTTGTGTAAGACCTTGTCTGGGACAATGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* *
22684428 GATAACATGTAAGACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
22684454 TATGGCGTTG
Statistics
Matches: 87, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 81 0.93
44 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:22694137 original size:44 final size:44
Alignment explanation
Indices: 22694074--22694177 Score: 181
Period size: 44 Copynumber: 2.4 Consensus size: 44
22694064 TGCTTTAACA
*
22694074 TCTGCACACTTAGTGCTTTAAGGGTTAGCCAAAGCTAAAATGAT
1 TCTGCACACTTAGTGCTTTAAGGGTTAGCCAAAGCTAAAACGAT
*
22694118 TCTGCACACTTAGTGCTTTAAGGGTTAGCCAAAGCTAGAACGAT
1 TCTGCACACTTAGTGCTTTAAGGGTTAGCCAAAGCTAAAACGAT
*
22694162 TCTACACACTTAGTGC
1 TCTGCACACTTAGTGC
22694178 CATTTCAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTGCACACTTAGTGCTTTAAGGGTTAGCCAAAGCTAAAACGAT
Found at i:22709443 original size:17 final size:18
Alignment explanation
Indices: 22709421--22709463 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 18
22709411 TCTAAGTCTT
22709421 TAACTCG-CAACTGGTAA
1 TAACTCGTCAACTGGTAA
22709438 TAACTCGATTTCAACTGGTAA
1 TAACTCG---TCAACTGGTAA
22709459 TAACT
1 TAACT
22709464 GATCAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.32
21 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (18 bp):
TAACTCGTCAACTGGTAA
Found at i:22711486 original size:37 final size:37
Alignment explanation
Indices: 22711436--22711578 Score: 232
Period size: 37 Copynumber: 3.9 Consensus size: 37
22711426 CTTTAGCTCA
* * *
22711436 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCTG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
22711473 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
22711510 GACATAATCTCCACACGTAGTAATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
22711547 GACATAATCTCCACACGTAGTCATCGGGTCTT
1 GACAAAATCTCCACACGTAGTCATCGGGTCTT
22711579 TAGAGCTCGG
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:22711816 original size:38 final size:42
Alignment explanation
Indices: 22711764--22712144 Score: 294
Period size: 49 Copynumber: 8.0 Consensus size: 42
22711754 ATATACACTT
22711764 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
22711808 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
22711855 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC----ATATATA-A
*
22711906 CTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
22711955 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
22712004 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
22712051 CTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
*
22712100 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA
22712145 CACTTTCACA
Statistics
Matches: 317, Mismatches: 11, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
47 131 0.41
49 140 0.44
51 46 0.15
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATAA
Found at i:22711967 original size:49 final size:47
Alignment explanation
Indices: 22711697--22712156 Score: 704
Period size: 47 Copynumber: 9.6 Consensus size: 47
22711687 CCCTTCGGGA
* * * * * *
22711697 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22711744 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22711791 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22711838 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22711885 CTTATCACATATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22711936 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22711985 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22712034 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22712081 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22712130 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
22712157 TATTCAAATA
Statistics
Matches: 386, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 200 0.52
49 140 0.36
51 46 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22711997 original size:145 final size:142
Alignment explanation
Indices: 22711697--22712156 Score: 717
Period size: 145 Copynumber: 3.2 Consensus size: 142
22711687 CCCTTCGGGA
* * * * * *
22711697 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
22711762 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
22711825 TCGGCTATTAGGC
130 TCGGCTATTAGGC
* *
22711838 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACA-ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC----ATATAT
*
22711903 ACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
61 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
*
22711968 CACATCGGCCATTAGGC
126 CACATCGGCTATTAGGC
22711985 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
22712050 ACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
22712115 CATCGGCTATTAGGC
128 CATCGGCTATTAGGC
22712130 CTTATCACATATATACACTTTCACATT
1 CTTATCACA-ATATACACTTTCACATT
22712157 TATTCAAATA
Statistics
Matches: 296, Mismatches: 15, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
141 47 0.16
143 19 0.06
145 139 0.47
147 46 0.16
149 45 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACAATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
CGGCTATTAGGC
Found at i:22717093 original size:43 final size:43
Alignment explanation
Indices: 22717043--22717144 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
22717033 TCCCGGACGT
* * **
22717043 GGTCTTACATGTAATTCA-ATGTCGATGCCTCTGTCCCAGACAA
1 GGTCTTACACGTAATTCAGAT-ACGATGCCGATGTCCCAGACAA
* *
22717086 GGTCTTACACG-AAATCAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAATTCAGATACGATGCCGATGTCCCAGACAA
*
22717128 GGTCTTATACGTAATTC
1 GGTCTTACACGTAATTC
22717145 TCAACCGAGG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 33 0.67
43 16 0.33
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATTCAGATACGATGCCGATGTCCCAGACAA
Found at i:22719921 original size:47 final size:47
Alignment explanation
Indices: 22719830--22719956 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 47
22719820 TGGGTAAGGT
* ***
22719830 GCCGATGCCATGTCCCAGACACTGTCTTACAGTAGCTCATATCTC-AA
1 GCCGATGCCATGTCCCAGACACTGTCTTACACT-GAAAATATCTCGAA
* * *
22719877 GTCGATGCCATGTCCCAGACACGGTCTTACACTGAAAATCATCTCGTA
1 GCCGATGCCATGTCCCAGACACTGTCTTACACTGAAAAT-ATCTCGAA
22719925 GCCGATG-CATGTCCCAGACA-TGTCTTACACTG
1 GCCGATGCCATGTCCCAGACACTGTCTTACACTG
22719957 GCTGCAACAC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 14 0.20
47 48 0.70
48 7 0.10
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACACTGTCTTACACTGAAAATATCTCGAA
Found at i:22721349 original size:50 final size:49
Alignment explanation
Indices: 22721239--22721417 Score: 205
Period size: 50 Copynumber: 3.6 Consensus size: 49
22721229 GTACGCATAA
* *
22721239 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAG
* ** * * *
22721288 TAGCCTCCACTTAGTACTACACACGTGACCTAACCATCTGATGCACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACGTAG
* * * * * *
22721338 TAGCCTTCACTTAGTACTACACACATGATCGAAGTTATCGGGTACGCATAG
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACGTAG
22721389 TAGCCTGCACTTAGTACTACACACGTGAC
1 TAGCCTGCACTTAGTACTACACACGTGAC
22721418 ATCACAATAG
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
49 27 0.25
50 43 0.40
51 37 0.35
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACGTAG
Found at i:22722861 original size:49 final size:49
Alignment explanation
Indices: 22722779--22723003 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 49
22722769 CTGGTATGCA
* * *
22722779 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * *
22722828 TAGGAGCTTGCACTTAGTACTACACACGTGACCAATTATCCCGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
22722877 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * * * *
22722927 TAGTAGCATGCACTTAGTACTACACACGTGATTACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA--CCAATTATCCGGTACACG
22722978 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
22723004 TGCGACCTCA
Statistics
Matches: 149, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 74 0.50
50 41 0.28
51 33 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:22722950 original size:99 final size:99
Alignment explanation
Indices: 22722777--22723010 Score: 290
Period size: 101 Copynumber: 2.4 Consensus size: 99
22722767 ATCTGGTATG
* * ** * *
22722777 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGGAGCTTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGGAGCATGCACT
*
22722842 TAGTACTACACACGTGA-CCAATTATCCCGTACA
66 TAGTACTACACACGTGATACAATTATCCCGTACA
* * * *
22722875 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCATGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGGAGCATGCAC
* * ** *
22722940 TTAGTACTACACACGTGATTACAGTTTTCGGGTACG
65 TTAGTACTACACACGTGA-TACAATTATCCCGTACA
*
22722976 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
22723011 TCACAATAGA
Statistics
Matches: 114, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 31 0.27
99 41 0.36
101 42 0.37
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGGAGCATGCACT
TAGTACTACACACGTGATACAATTATCCCGTACA
Found at i:22729615 original size:50 final size:50
Alignment explanation
Indices: 22729436--22729727 Score: 313
Period size: 50 Copynumber: 5.9 Consensus size: 50
22729426 ATCTATTGTG
* * * **
22729436 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * * *
22729486 -GGTCGCTTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CCAGATAA-TT
* * * * **
22729536 TGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * **
22729586 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* *
22729636 AGATCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * *
22729686 -GGTCGCATGTGTAGTACTAAGTGCT-GGCTACTATGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTG-TAGGCTACTACGTGTACCA
22729728 TATAGCTTTG
Statistics
Matches: 205, Mismatches: 32, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
49 72 0.35
50 98 0.48
51 35 0.17
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
Found at i:22729641 original size:100 final size:99
Alignment explanation
Indices: 22729439--22729726 Score: 357
Period size: 100 Copynumber: 2.9 Consensus size: 99
22729429 TATTGTGAGG
* * *
22729439 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACTGGATAATTGGTCGCTTGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-GGATAATTGGTCGCATGTGTAGTACT
* *
22729504 AAGTGTAGGCTACTATGCGTACCCAATAACTTTGA
65 AAGTGTAGGCTACTACGCGTACCCAATAACTTAGA
* ** * *
22729539 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATT-GGTCGCATGTGTAGTAC
* * **
22729604 TAAGTGTAGGCTACTACGTGTA-TCAGAT-GGTTAGA
64 TAAGTGTAGGCTACTACGCGTACCCA-ATAACTTAGA
*
22729639 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATTGGTCGCATGTGTAGTACT
*
22729704 AAGTGCT-GGCTACTATGCGTACC
65 AAGTG-TAGGCTACTACGCGTACC
22729727 ATATAGCTTT
Statistics
Matches: 160, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
99 33 0.21
100 89 0.56
101 38 0.24
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACGGATAATTGGTCGCATGTGTAGTACTA
AGTGTAGGCTACTACGCGTACCCAATAACTTAGA
Found at i:22732353 original size:40 final size:40
Alignment explanation
Indices: 22732316--22732461 Score: 197
Period size: 40 Copynumber: 3.7 Consensus size: 40
22732306 TGAGGAATTG
22732316 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
* *
22732356 TATCTGGGCTTAAAGACCCACAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
* * * *
22732396 TATCCAGGCTTAAAGACCCGCAGGCT-TCATGTTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
* *
22732436 TATCCGAGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
22732462 CGAGCTGGTA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.17
40 77 0.83
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
Found at i:22739989 original size:40 final size:41
Alignment explanation
Indices: 22739952--22740057 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 41
22739942 TGAGGAATTG
*
22739952 TATCCGGGCTTAAAGACCCGTAGGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGTAGGCTATCATGCTGGAATGC
** * * *
22739992 TATCTTGGCTTAAAGACCCGCAGGCT-TCATGTTAGAATGC
1 TATCCGGGCTTAAAGACCCGTAGGCTATCATGCTGGAATGC
* *
22740032 TATCCGAGC-TAGAGACCCGTAGGCTA
1 TATCCGGGCTTAAAGACCCGTAGGCTA
22740058 CGAGCTGGTA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
39 15 0.28
40 38 0.72
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (41 bp):
TATCCGGGCTTAAAGACCCGTAGGCTATCATGCTGGAATGC
Found at i:22742292 original size:40 final size:40
Alignment explanation
Indices: 22742222--22742445 Score: 317
Period size: 40 Copynumber: 5.5 Consensus size: 40
22742212 AAACCAAGTA
* * *
22742222 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAATTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
22742261 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22742301 CCTTCGGGAATTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22742341 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
*
22742384 CCTTCGGGACTTGGCCCGGTTATCATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATG
22742427 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22742446 TTATCATCCG
Statistics
Matches: 171, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.08
40 78 0.46
42 2 0.01
43 77 0.45
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22742383 original size:43 final size:43
Alignment explanation
Indices: 22742248--22742452 Score: 323
Period size: 43 Copynumber: 4.9 Consensus size: 43
22742238 GGATATAGCT
* *
22742248 ACTCGCTCAATTGCCTTCGGGACTTAGCCCGG--AT-ATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
*
22742288 ACTCGCACAAATGCCTTCGGGAATTAGCCCGG--AT-ATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
22742328 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
* *
22742371 ACTCACACAAATGCCTTCGGGACTTGGCCCGGTTATCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
22742414 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCAT
22742453 CCGAATATTC
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 68 0.44
42 2 0.01
43 84 0.55
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (43 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCATAGTA
Found at i:22742440 original size:86 final size:83
Alignment explanation
Indices: 22742222--22742452 Score: 337
Period size: 86 Copynumber: 2.8 Consensus size: 83
22742212 AAACCAAGTA
* * *
22742222 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAATTGCCTTCGGGACTTAGCCCGG--AT-
1 CCTTCGGGAATTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATC
*
22742282 ATAGTAACTCGCACAAATG
65 ATAGTAACTCACACAAATG
22742301 CCTTCGGGAATTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
1 CCTTCGGGAATTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
22742366 TAGTAACTCACACAAATG
66 TAGTAACTCACACAAATG
* *
22742384 CCTTCGGGACTTGGCCCGGTTATCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
1 CCTTCGGGAATTAGCCCGG--AT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
22742449 TCAT
63 TCAT
22742453 CCGAATATTC
Statistics
Matches: 138, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
79 14 0.10
80 40 0.29
82 2 0.01
83 35 0.25
85 2 0.01
86 45 0.33
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (83 bp):
CCTTCGGGAATTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
TAGTAACTCACACAAATG
Found at i:22745938 original size:28 final size:28
Alignment explanation
Indices: 22745872--22745999 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
22745862 CATGAGATTG
* * **
22745872 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22745901 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22745929 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22745958 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22745986 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22746000 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22745961 original size:57 final size:57
Alignment explanation
Indices: 22745872--22745999 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
22745862 CATGAGATTG
*
22745872 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
22745929 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
22745986 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22746000 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:22753976 original size:28 final size:28
Alignment explanation
Indices: 22753910--22754037 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
22753900 CATGAGATTG
* * **
22753910 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22753939 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22753967 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22753996 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22754024 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22754038 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22753999 original size:57 final size:57
Alignment explanation
Indices: 22753910--22754037 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
22753900 CATGAGATTG
*
22753910 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
22753967 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
22754024 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22754038 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:22759820 original size:547 final size:548
Alignment explanation
Indices: 22758779--22759875 Score: 2151
Period size: 547 Copynumber: 2.0 Consensus size: 548
22758769 AAAATATCTG
22758779 ATGACACAAAGAGATCTAAATCTACGACAAAGACGTTGGCTTGAGTTGTTGAAGGACTACGAACT
1 ATGACACAAAGAGATCTAAATCTACGACAAAGACGTTGGCTTGAGTTGTTGAAGGACTACGAACT
22758844 TGTTATTGATTATCACCCGGGAAAGGCTAACGTGGTTGCCGATGCTTTAAGTGGGAAAGCACTGT
66 TGTTATTGATTATCACCCGGGAAAGGCTAACGTGGTTGCCGATGCTTTAAGTGGGAAAGCACTGT
22758909 TTGCTTTGAGAGCGGTGAATGCTCACTTATCCGTCTCACCCGATGGGGTGCTAGTAGCTGAATTA
131 TTGCTTTGAGAGCGGTGAATGCTCACTTATCCGTCTCACCCGATGGGGTGCTAGTAGCTGAATTA
22758974 GAGGCCAAACCATTATTGATTCGTCAAATACTTGAATCCCAGAAAGTCGATGCTGAATTGGTCAC
196 GAGGCCAAACCATTATTGATTCGTCAAATACTTGAATCCCAGAAAGTCGATGCTGAATTGGTCAC
22759039 TAAACGAGCTGAATGTGCTTCGAATAAGGAATCGGAGTTCCGGATTGACGACAATGATTGCTTGA
261 TAAACGAGCTGAATGTGCTTCGAATAAGGAATCGGAGTTCCGGATTGACGACAATGATTGCTTGA
22759104 CGCTCAGAGGTCGATTATGTGTTCCAAGAAACTCGAAACTTATTTCGATGATTTTGAACGAGGCT
326 CGCTCAGAGGTCGATTATGTGTTCCAAGAAACTCGAAACTTATTTCGATGATTTTGAACGAGGCT
*
22759169 CATAGTAGTCGAATGTCAGTCCACCCGGGTAGTACTAAAATGTACAATGACCTGAAATGCCAATT
391 CATAGTAGTCGAATGTCAGTCCACCCGGGTAGTACTAAAATGTACAATGACCTGAAACGCCAATT
22759234 TTGGTGGCCCGGTATGAAATGAGACATTTCTAAATTTGTTTCAATGCGTTTGATATGTCAACAAG
456 TTGGTGGCCCGGTATGAAATGAGACATTTCTAAATTTGTTTCAATGCGTTTGATATGTCAACAAG
22759299 TGAAAGCGGAACATCAAGTACCATCGGA
521 TGAAAGCGGAACATCAAGTACCATCGGA
*
22759327 ATGACGCAAAGAGATCTAAATCTACGACAAAGACGTTGGCTTGAGTTGTTGAAGGACTACGAACT
1 ATGACACAAAGAGATCTAAATCTACGACAAAGACGTTGGCTTGAGTTGTTGAAGGACTACGAACT
22759392 TGTTATTGATTATCACCCGGGAAAGGCTAACGTGGTTGCCGATGCTTTAAGT-GGAAAGCACTGT
66 TGTTATTGATTATCACCCGGGAAAGGCTAACGTGGTTGCCGATGCTTTAAGTGGGAAAGCACTGT
22759456 TTGCTTTGAGAGCGGTGAATGCTCACTTATCCGTCTCACCCGATGGGGTGCTAGTAGCTGAATTA
131 TTGCTTTGAGAGCGGTGAATGCTCACTTATCCGTCTCACCCGATGGGGTGCTAGTAGCTGAATTA
22759521 GAGGCCAAACCATTATTGATTCGTCAAATACTTGAATCCCAGAAAGTCGATGCTGAATTGGTCAC
196 GAGGCCAAACCATTATTGATTCGTCAAATACTTGAATCCCAGAAAGTCGATGCTGAATTGGTCAC
22759586 TAAACGAGCTGAATGTGCTTCGAATAAGGAATCGGAGTTCCGGATTGACGACAATGATTGCTTGA
261 TAAACGAGCTGAATGTGCTTCGAATAAGGAATCGGAGTTCCGGATTGACGACAATGATTGCTTGA
* *
22759651 CGTTCAGAGGTCGATTATGTGTTCCAAGAAATTCGAAACTTATTTCGATGATTTTGAACGAGGCT
326 CGCTCAGAGGTCGATTATGTGTTCCAAGAAACTCGAAACTTATTTCGATGATTTTGAACGAGGCT
22759716 CATAGTAGTCGAATGTCAGTCCACCCGGGTAGTACTAAAATGTACAATGACCTGAAACGCCAATT
391 CATAGTAGTCGAATGTCAGTCCACCCGGGTAGTACTAAAATGTACAATGACCTGAAACGCCAATT
22759781 TTGGTGGCCCGGTATGAAATGAGACATTTCTAAATTTGTTTCAATGCGTTTGATATGTCAACAAG
456 TTGGTGGCCCGGTATGAAATGAGACATTTCTAAATTTGTTTCAATGCGTTTGATATGTCAACAAG
22759846 TGAAAGCGGAACATCAAGTACCATCGGA
521 TGAAAGCGGAACATCAAGTACCATCGGA
22759874 AT
1 AT
22759876 TACTTCAGCC
Statistics
Matches: 545, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
547 429 0.79
548 116 0.21
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (548 bp):
ATGACACAAAGAGATCTAAATCTACGACAAAGACGTTGGCTTGAGTTGTTGAAGGACTACGAACT
TGTTATTGATTATCACCCGGGAAAGGCTAACGTGGTTGCCGATGCTTTAAGTGGGAAAGCACTGT
TTGCTTTGAGAGCGGTGAATGCTCACTTATCCGTCTCACCCGATGGGGTGCTAGTAGCTGAATTA
GAGGCCAAACCATTATTGATTCGTCAAATACTTGAATCCCAGAAAGTCGATGCTGAATTGGTCAC
TAAACGAGCTGAATGTGCTTCGAATAAGGAATCGGAGTTCCGGATTGACGACAATGATTGCTTGA
CGCTCAGAGGTCGATTATGTGTTCCAAGAAACTCGAAACTTATTTCGATGATTTTGAACGAGGCT
CATAGTAGTCGAATGTCAGTCCACCCGGGTAGTACTAAAATGTACAATGACCTGAAACGCCAATT
TTGGTGGCCCGGTATGAAATGAGACATTTCTAAATTTGTTTCAATGCGTTTGATATGTCAACAAG
TGAAAGCGGAACATCAAGTACCATCGGA
Found at i:22762546 original size:28 final size:28
Alignment explanation
Indices: 22762480--22762607 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
22762470 CATGAGATTG
* * **
22762480 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22762509 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22762537 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22762566 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22762594 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22762608 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22762569 original size:57 final size:57
Alignment explanation
Indices: 22762480--22762607 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
22762470 CATGAGATTG
*
22762480 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
22762537 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
22762594 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22762608 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:22769358 original size:18 final size:19
Alignment explanation
Indices: 22769335--22769372 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
22769325 CAATTAAAAT
22769335 AAAAAG-GAATTAAA-AAGG
1 AAAAAGTGAA-TAAATAAGG
22769353 AAAAAGTGAATAAATAAGG
1 AAAAAGTGAATAAATAAGG
22769372 A
1 A
22769373 GGGAAGAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.13
Consensus pattern (19 bp):
AAAAAGTGAATAAATAAGG
Found at i:22770578 original size:29 final size:29
Alignment explanation
Indices: 22770509--22770608 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
22770499 AAATTGCCAT
*
22770509 AGCACTAAGTGTGCAAGTTTGATTATAT-
1 AGCACTAAGTGTGCGAGTTTGATTATATA
*
22770537 AGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
22770566 AGCACTAAGTGTGCGAGTTTGATTATATA
1 AGCACTAAGTGTGCGAGTTTGATTATATA
22770595 A-CACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22770609 GACTTACTAT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 39 0.57
29 29 0.43
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22778119 original size:40 final size:40
Alignment explanation
Indices: 22778049--22778225 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
22778039 AAACCAAGTA
* ** *
22778049 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTTAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
22778088 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22778128 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22778168 CCTTCGGGACTT-GCCCGGATCATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGAT-ATAGTAACTCGCACAAATG
*
22778207 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22778226 TTATCATCCG
Statistics
Matches: 129, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
39 37 0.29
40 92 0.71
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22787925 original size:46 final size:47
Alignment explanation
Indices: 22787875--22787963 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 47
22787865 CTAACTATCA
* *
22787875 TCTCGTAGCCGATGCATGTCCCAGACAT-ATCGTACACTGGCTTACG
1 TCTCGGAGCCGATACATGTCCCAGACATGATCGTACACTGGCTTACG
* * * *
22787921 TCTCGGGGCTGATACATGTCCCAGACATGGTCTTACACTGGCT
1 TCTCGGAGCCGATACATGTCCCAGACATGATCGTACACTGGCT
22787964 CTCATAGCGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
46 24 0.67
47 12 0.33
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (47 bp):
TCTCGGAGCCGATACATGTCCCAGACATGATCGTACACTGGCTTACG
Found at i:22787986 original size:47 final size:47
Alignment explanation
Indices: 22787886--22788010 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
22787876 CTCGTAGCCG
* * * ** *
22787886 ATGCATGTCCCAGACATATCGTACACTGGCT-TACGTCTCGGGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTACATAGCGGGGCTA
* *
22787932 ATACATGTCCCAGACATGGTCTTACACTGGCTCT-CATAGCGTGGCTA
1 ATGCATGTCCCAGACAT-GTCTTACACTGGCTCTACATAGCGGGGCTA
*
22787979 ATGCATGTCCCAGACATGTCTTACACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTGGCTC
22788011 ACAAACAAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 30 0.45
47 36 0.54
48 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTACATAGCGGGGCTA
Found at i:22791033 original size:21 final size:21
Alignment explanation
Indices: 22791008--22791047 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22790998 TTGTTATTAT
22791008 ACATGATATGACATAATATGC
1 ACATGATATGACATAATATGC
* *
22791029 ACATGATATGCCATGATAT
1 ACATGATATGACATAATAT
22791048 ACTCATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATGATATGACATAATATGC
Found at i:22791037 original size:11 final size:11
Alignment explanation
Indices: 22791008--22791061 Score: 58
Period size: 10 Copynumber: 5.1 Consensus size: 11
22790998 TTGTTATTAT
22791008 ACATGATATG-
1 ACATGATATGC
*
22791018 ACATAATATGC
1 ACATGATATGC
22791029 ACATGATATGC
1 ACATGATATGC
*
22791040 -CATGATATAC
1 ACATGATATGC
* *
22791050 TCATTATATGC
1 ACATGATATGC
22791061 A
1 A
22791062 TGGGTTGGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
10 18 0.50
11 18 0.50
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (11 bp):
ACATGATATGC
Found at i:22791130 original size:25 final size:25
Alignment explanation
Indices: 22791092--22791163 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
22791082 GGAGGAAGTG
22791092 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
* * *
22791117 CGAAAAGGGATTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
22791142 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
22791164 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:22791176 original size:24 final size:24
Alignment explanation
Indices: 22791094--22791176 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
22791084 AGGAAGTGCA
*
22791094 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
22791118 GAAAAGGGATTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
22791143 AAAAAGGGCTTTGCCCCAG-TTATT
1 -AAAAGGGCTTTGCCCCAGTTTATC
22791167 AAAAGAGGCT
1 AAAAG-GGCT
22791177 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
23 5 0.10
24 8 0.15
25 39 0.75
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:22792791 original size:43 final size:43
Alignment explanation
Indices: 22792744--22792841 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
22792734 TAGCCTAGCT
** * * *
22792744 ATGGTCTTACTTGAAATCAAATAATGATGCCAATATTCTAGAC
1 ATGGTCTTACACGAAATCAAACAATGATGCCAATATCCCAGAC
* * *
22792787 ATGGTCTTACACGTAATCACACAATTATGCCAATATCCCAGAC
1 ATGGTCTTACACGAAATCAAACAATGATGCCAATATCCCAGAC
22792830 ATGGTCTTACAC
1 ATGGTCTTACAC
22792842 ATAATCACGT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAACAATGATGCCAATATCCCAGAC
Found at i:22800683 original size:41 final size:40
Alignment explanation
Indices: 22800629--22800754 Score: 148
Period size: 41 Copynumber: 3.1 Consensus size: 40
22800619 CATAACTTTG
* *
22800629 GCTATATATGGCACTTAATGTGCAAGATCGAGATAGCTTCA
1 GCTACATATGGCACTTAATGTGC-AGATTGAGATAGCTTCA
*
22800670 GCTACATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCA
1 GCTACATATGGCACTTAATGTGC-AGATTGAGATAGCTTCA
* * *
22800711 GCT-CTATACGGCACTTACTGTGC-GATTTGAGATAGCTTCG
1 GCTAC-ATATGGCACTTAATGTGCAGA-TTGAGATAGCTTCA
22800751 GCTA
1 GCTA
22800755 TGTACGGAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
39 2 0.03
40 17 0.23
41 56 0.75
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
GCTACATATGGCACTTAATGTGCAGATTGAGATAGCTTCA
Found at i:22804413 original size:12 final size:11
Alignment explanation
Indices: 22804398--22804451 Score: 54
Period size: 11 Copynumber: 4.5 Consensus size: 11
22804388 TCGTAAGTAA
22804398 AAAAAAGTTTCG
1 AAAAAAG-TTCG
*
22804410 AAAAAAAAGTTCAA
1 --AAAAAAGTTC-G
22804424 AAAAAAGTTCG
1 AAAAAAGTTCG
*
22804435 AAAAAAATTCG
1 AAAAAAGTTCG
22804446 AAAAAA
1 AAAAAA
22804452 TTAAAAACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
11 16 0.44
12 10 0.28
13 3 0.08
14 7 0.19
ACGTcount: A:0.65, C:0.07, G:0.11, T:0.17
Consensus pattern (11 bp):
AAAAAAGTTCG
Found at i:22804415 original size:14 final size:13
Alignment explanation
Indices: 22804396--22804451 Score: 82
Period size: 12 Copynumber: 4.5 Consensus size: 13
22804386 GTTCGTAAGT
22804396 AAAAAAAAGTTTCG
1 AAAAAAAAG-TTCG
22804410 AAAAAAAAGTTC-
1 AAAAAAAAGTTCG
22804422 AAAAAAAAGTTCG
1 AAAAAAAAGTTCG
22804435 -AAAAAAA-TTCG
1 AAAAAAAAGTTCG
22804446 AAAAAA
1 AAAAAA
22804452 TTAAAAACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.10
12 24 0.60
13 3 0.08
14 9 0.22
ACGTcount: A:0.66, C:0.07, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAAAAAGTTCG
Found at i:22809953 original size:40 final size:39
Alignment explanation
Indices: 22809909--22810093 Score: 228
Period size: 40 Copynumber: 4.7 Consensus size: 39
22809899 GCCACTAGCT
*
22809909 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
22809949 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
** *
22809988 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* * ** * *
22810028 CAAATGCCTTCGGGACTTAGCCCAGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
22810068 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
22810094 TATCATCCGA
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 39 0.30
40 89 0.70
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:22810007 original size:79 final size:80
Alignment explanation
Indices: 22809902--22810096 Score: 243
Period size: 79 Copynumber: 2.5 Consensus size: 80
22809892 GGATATAGCC
* *
22809902 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* * *
22809967 AGCCCGGTA-TAATA
66 AGCCCAGAATTAACA
* ** *
22809981 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAATTAGTAGCTCGCACAAATGCCTTCGGGACT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACT
* *
22810045 TAGCCCAGAATTAGCC
65 TAGCCCAGAATTAACA
*
22810061 ACTAGCTCAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGTTAT
22810097 CATCCGAACA
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
78 2 0.02
79 65 0.67
80 28 0.29
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCAGAATTAACA
Found at i:22810740 original size:34 final size:34
Alignment explanation
Indices: 22810702--22810769 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
22810692 AAGCATCAAT
22810702 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
1 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
22810736 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
1 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
22810770 CCTATCTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.18
Consensus pattern (34 bp):
ATGCTTGCCTCTAACCGAACACATGCAACACCAA
Found at i:22815785 original size:46 final size:46
Alignment explanation
Indices: 22815732--22815907 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
22815722 TGGTTGAGCA
22815732 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22815778 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22815823 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22815871 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22815908 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.