Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 76 of 253
Found at i:22815888 original size:93 final size:93
Alignment explanation
Indices: 22815729--22815900 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
22815719 GGATGGTTGA
* * *
22815729 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22815794 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22815822 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
22815887 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
22815901 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22820820 original size:40 final size:40
Alignment explanation
Indices: 22820776--22820963 Score: 215
Period size: 40 Copynumber: 4.7 Consensus size: 40
22820766 GCCACTAGCT
*
22820776 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
22820816 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
22820855 CAAATGCCTTCGGGACTTAGCCCGGAATTAT--TAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTCGCA
* * * ** * *
22820895 CAAATGCCTTCGGGACTTAGCTCAG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
22820935 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
22820964 CATCCGAACA
Statistics
Matches: 126, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 39 0.31
40 81 0.64
41 1 0.01
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:22821609 original size:34 final size:34
Alignment explanation
Indices: 22821571--22821638 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
22821561 AAGCATCAAT
22821571 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
1 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
22821605 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
1 ATGCTTGCCTCTAACCGAACACATGCAACACCAA
22821639 CCTATCTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.18
Consensus pattern (34 bp):
ATGCTTGCCTCTAACCGAACACATGCAACACCAA
Found at i:22823971 original size:48 final size:48
Alignment explanation
Indices: 22823900--22823997 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
22823890 TGACGAGTAA
22823900 AAGAATGTTTTAAGTCAATCTGACAATCAATGTTGGAAATCAGATAAC
1 AAGAATGTTTTAAGTCAATCTGACAATCAATGTTGGAAATCAGATAAC
22823948 AAGAATGTTTTAAGTCAATCTGACAATCAATGTTGGAAATCAGATAAC
1 AAGAATGTTTTAAGTCAATCTGACAATCAATGTTGGAAATCAGATAAC
22823996 AA
1 AA
22823998 ATTTTGTTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (48 bp):
AAGAATGTTTTAAGTCAATCTGACAATCAATGTTGGAAATCAGATAAC
Found at i:22823979 original size:25 final size:25
Alignment explanation
Indices: 22823903--22823981 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
22823893 CGAGTAAAAG
22823903 AATGTTTTAAGTCAATCTGACAATC
1 AATGTTTTAAGTCAATCTGACAATC
** * * *
22823928 AATGTTGGAAATCAGA--TAACAA-G
1 AATGTTTTAAGTCA-ATCTGACAATC
22823951 AATGTTTTAAGTCAATCTGACAATC
1 AATGTTTTAAGTCAATCTGACAATC
22823976 AATGTT
1 AATGTT
22823982 GGAAATCAGA
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
22 1 0.03
23 11 0.28
24 10 0.25
25 17 0.43
26 1 0.03
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (25 bp):
AATGTTTTAAGTCAATCTGACAATC
Found at i:22837604 original size:57 final size:57
Alignment explanation
Indices: 22837532--22837656 Score: 171
Period size: 57 Copynumber: 2.2 Consensus size: 57
22837522 GTAAGTCCGC
* *
22837532 ACACTTAGTGTTATATAATCAAACTCGCAAACTTAGTGCT-TACATAATCAAACTCGA
1 ACACTTAGTGCTATATAATCAAACTCGCAAACTTAGTGCTATACA-AATCAAACCCGA
* * * * *
22837589 ACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAACCCGA
1 ACACTTAGTGCTATATAATCAAACTCGCAAACTTAGTGCTATACAAATCAAACCCGA
22837646 ACACTTAGTGC
1 ACACTTAGTGC
22837657 CAATCTCATG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 57 0.95
58 3 0.05
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (57 bp):
ACACTTAGTGCTATATAATCAAACTCGCAAACTTAGTGCTATACAAATCAAACCCGA
Found at i:22837627 original size:28 final size:28
Alignment explanation
Indices: 22837529--22837630 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
22837519 ATAGTAAGTC
*
22837529 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
22837557 CGCAAACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
*
22837586 CGAACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
22837614 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
22837631 GCAATTTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
28 40 0.62
29 25 0.38
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:22837651 original size:29 final size:28
Alignment explanation
Indices: 22837532--22837656 Score: 128
Period size: 29 Copynumber: 4.4 Consensus size: 28
22837522 GTAAGTCCGC
* *
22837532 ACACTTAGTGTTATATAATCAAACTCGCA
1 ACACTTAGTGCTATACAATCAAACTCG-A
22837561 A-ACTTAGTGCT-TACATAATCAAACTCGA
1 ACACTTAGTGCTATAC--AATCAAACTCGA
* * *
22837589 ACACTTAGTGCTATATAATCAAACTTGC
1 ACACTTAGTGCTATACAATCAAACTCGA
* * *
22837617 ACACTTAGTGCTATGCAATTTAAACCCGA
1 ACACTTAGTGCTATACAA-TCAAACTCGA
22837646 ACACTTAGTGC
1 ACACTTAGTGC
22837657 CAATCTCATG
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
27 2 0.03
28 37 0.46
29 39 0.49
30 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (28 bp):
ACACTTAGTGCTATACAATCAAACTCGA
Found at i:22844812 original size:28 final size:28
Alignment explanation
Indices: 22844780--22844907 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
22844770 ATAGTAAGTC
*
22844780 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
22844808 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
22844837 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
22844865 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
22844894 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22844908 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:22844870 original size:57 final size:57
Alignment explanation
Indices: 22844779--22844907 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
22844769 TATAGTAAGT
*
22844779 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
22844836 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
22844893 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
22844908 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:22846954 original size:37 final size:37
Alignment explanation
Indices: 22846895--22847003 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
22846885 AGCTCAGACG
* *
22846895 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
22846932 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
22846969 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
22847004 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:22847288 original size:50 final size:50
Alignment explanation
Indices: 22847153--22847299 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
22847143 CATCGCCTAC
* *
22847153 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
22847203 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
22847253 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
22847300 TCACCACATT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 6 0.06
50 86 0.92
51 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:22847349 original size:47 final size:47
Alignment explanation
Indices: 22847258--22847402 Score: 222
Period size: 47 Copynumber: 3.1 Consensus size: 47
22847248 TATATATATT
* * *
22847258 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
22847303 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
22847350 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
22847397 TCACAT
1 TCACAT
22847403 AAAATCCTAA
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
45 19 0.21
46 1 0.01
47 70 0.78
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:22851585 original size:40 final size:40
Alignment explanation
Indices: 22851523--22851832 Score: 543
Period size: 40 Copynumber: 7.8 Consensus size: 40
22851513 CCAGCATGAT
* * *
22851523 TGCTCTTCGGGACCTAGCCCGGATATAACACAAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
22851563 TGCTCTCCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22851603 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
22851643 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22851682 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22851722 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22851762 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22851801 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
22851833 CTCAATTCTC
Statistics
Matches: 257, Mismatches: 11, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
39 77 0.30
40 180 0.70
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:22851691 original size:79 final size:80
Alignment explanation
Indices: 22851523--22851832 Score: 543
Period size: 79 Copynumber: 3.9 Consensus size: 80
22851513 CCAGCATGAT
* * * * *
22851523 TGCTCTTCGGGACCTAGCCCGGATATAACACAAGCACGAATGCTCTCCGGGACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
22851588 CATCACTAGCACGAA
66 CATCACTAGCACGAA
22851603 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
22851667 CATCACTAGCACGAA
66 CATCACTAGCACGAA
22851682 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
22851747 TATCACTAGCACGAA
66 CATCACTAGCACGAA
22851762 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
22851826 TATCACT
66 CATCACT
22851833 CTCAATTCTC
Statistics
Matches: 223, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
79 141 0.63
80 82 0.37
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:22851748 original size:119 final size:119
Alignment explanation
Indices: 22851523--22851832 Score: 548
Period size: 119 Copynumber: 2.6 Consensus size: 119
22851513 CCAGCATGAT
* * * * *
22851523 TGCTCTTCGGGACCTAGCCCGGATATAACACAAGCACGAATGCTCTCCGGGACTTAGTCCGGATA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
22851588 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
22851643 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
22851708 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22851762 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
22851827 ATCACT
66 ATCACT
22851833 CTCAATTCTC
Statistics
Matches: 182, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 174 0.96
120 8 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (119 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:22859296 original size:39 final size:40
Alignment explanation
Indices: 22859228--22859451 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
22859218 AAACCAAGTA
* *
22859228 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
22859267 CCTTCGGGACTTAACCCGGATATAG-AACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
22859306 CCTTCGGGTCTTAGCCCGGAAATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
* *
22859346 CCTTCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
* **
22859389 CCTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
22859429 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
22859452 CATCCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 48 0.30
40 75 0.47
42 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:22859404 original size:83 final size:79
Alignment explanation
Indices: 22859228--22859451 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 79
22859218 AAACCAAGTA
* * * *
22859228 CCTTCGGGATTTAG-CCGGATATCG-CAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
22859291 GAACTCGCACACATG
65 GAACTCGCACAAATG
* * * *
22859306 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCTGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
22859371 CAACTACTCGCACAAATG
66 --A--ACTCGCACAAATG
*
22859389 CCTTCGGGACTTAGCCCGGATATAGTAACTTA-CACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
22859452 CATCCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
78 12 0.10
79 42 0.34
80 1 0.01
81 1 0.01
83 67 0.54
84 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AACTCGCACAAATG
Found at i:22866869 original size:29 final size:29
Alignment explanation
Indices: 22866834--22866907 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
22866824 GTTGTGAGAT
* *
22866834 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
22866863 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
22866892 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22866908 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:22873976 original size:41 final size:41
Alignment explanation
Indices: 22873860--22873976 Score: 121
Period size: 41 Copynumber: 2.9 Consensus size: 41
22873850 ATAATGATAT
* * **
22873860 TTAGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTTAA
1 TTAGGCTTTGAGCCTAGCAGGCCTTGTGCTGGTGTATAAAA
* * *
22873901 TCAGGC-TTGATGCCTAGCAGG-CTTATTGCCGGTGTATAAAA
1 TTAGGCTTTGA-GCCTAGCAGGCCTT-GTGCTGGTGTATAAAA
* *
22873942 TTAGACTTTGAGTCTAGCAGGCCTTGTGCTGGTGT
1 TTAGGCTTTGAGCCTAGCAGGCCTTGTGCTGGTGT
22873977 GTGATACAGG
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
40 7 0.12
41 46 0.77
42 7 0.12
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (41 bp):
TTAGGCTTTGAGCCTAGCAGGCCTTGTGCTGGTGTATAAAA
Found at i:22879769 original size:19 final size:19
Alignment explanation
Indices: 22879745--22879790 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
22879735 ATGAAAATAC
*
22879745 AAAAGAAAATAAAAATGAG
1 AAAAGAAAAGAAAAATGAG
* * *
22879764 AAAAGAGAGGAAAAATGAT
1 AAAAGAAAAGAAAAATGAG
22879783 AAAAGAAA
1 AAAAGAAA
22879791 CTGAGAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.09
Consensus pattern (19 bp):
AAAAGAAAAGAAAAATGAG
Found at i:22881804 original size:31 final size:31
Alignment explanation
Indices: 22881762--22881826 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
22881752 CTCTTTTCAT
*
22881762 TTTTCATATTTCATAACACTGGGCAGAAGCC
1 TTTTCAAATTTCATAACACTGGGCAGAAGCC
** *
22881793 TTTTCAAATTTCATATTACTGGGCCGAAGCC
1 TTTTCAAATTTCATAACACTGGGCAGAAGCC
22881824 TTT
1 TTT
22881827 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (31 bp):
TTTTCAAATTTCATAACACTGGGCAGAAGCC
Found at i:22882072 original size:24 final size:24
Alignment explanation
Indices: 22882020--22882162 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
22882010 GCTTTATCAT
*
22882020 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
22882045 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
22882069 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
22882092 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
22882116 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
22882140 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22882163 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 21 0.19
24 75 0.69
25 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22882096 original size:47 final size:48
Alignment explanation
Indices: 22882019--22882163 Score: 213
Period size: 47 Copynumber: 3.0 Consensus size: 48
22882009 TGCTTTATCA
* *
22882019 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
22882068 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
22882115 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
22882163 T
1 T
22882164 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
47 44 0.51
48 30 0.34
49 13 0.15
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:22882120 original size:71 final size:72
Alignment explanation
Indices: 22882020--22882161 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 72
22882010 GCTTTATCAT
*
22882020 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAG
1 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
22882085 CCCTTTA
66 CCCTTTA
* * *
22882092 ATAACTGG-GGCGTAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
22882155 GCCCTTT
65 GCCCTTT
22882162 TTCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
CCCTTTA
Found at i:22882240 original size:20 final size:20
Alignment explanation
Indices: 22882212--22882278 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
22882202 TTATGAATAC
*
22882212 ATCAAGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
22882232 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22882252 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
22882272 AACATGT
1 ATCATGT
22882279 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22882347 original size:25 final size:25
Alignment explanation
Indices: 22882315--22882362 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22882305 ATACATAAAC
* * *
22882315 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
22882340 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
22882363 CATGTCATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:22889815 original size:31 final size:31
Alignment explanation
Indices: 22889773--22889837 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
22889763 CTCTTTTCAT
*
22889773 TTTTCATATTTCATAACACTGGGCAGAAGCC
1 TTTTCAAATTTCATAACACTGGGCAGAAGCC
** *
22889804 TTTTCAAATTTCATATTACTGGGCCGAAGCC
1 TTTTCAAATTTCATAACACTGGGCAGAAGCC
22889835 TTT
1 TTT
22889838 GCTGTAAACG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (31 bp):
TTTTCAAATTTCATAACACTGGGCAGAAGCC
Found at i:22890083 original size:24 final size:24
Alignment explanation
Indices: 22890031--22890173 Score: 164
Period size: 24 Copynumber: 6.0 Consensus size: 24
22890021 ACTTTATCAT
*
22890031 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * * *
22890056 ATAACTGGGGAAAAAGCCATTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
22890080 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* ** *
22890103 ATACCTGGGGTGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
22890127 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
22890151 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22890174 TCACTTCCTC
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
23 18 0.18
24 70 0.70
25 12 0.12
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22890111 original size:47 final size:48
Alignment explanation
Indices: 22890030--22890174 Score: 177
Period size: 47 Copynumber: 3.0 Consensus size: 48
22890020 TACTTTATCA
* * *
22890030 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAAGCCATTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGAATAAGCCCTTTT
* **
22890079 TATAACTGGGGCATAAG-CCTTTTAATACCTGGGGTGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGAATAAGCCCTTTT
* * *
22890126 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGAATAAGCCCTTTT
22890174 T
1 T
22890175 CACTTCCTCC
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
47 40 0.49
48 31 0.38
49 11 0.13
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGAATAAGCCCTTTT
Found at i:22890268 original size:20 final size:20
Alignment explanation
Indices: 22890231--22890269 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22890221 ACATCAAGTG
**
22890231 CATATCATACATGTCATGTA
1 CATATCATACATACCATGTA
22890251 CATATCATACATACCATGT
1 CATATCATACATACCATGT
22890270 TTATCAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (20 bp):
CATATCATACATACCATGTA
Found at i:22896970 original size:8 final size:8
Alignment explanation
Indices: 22896958--22896990 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
22896948 AATAGGGACT
*
22896958 AAAATGTT
1 AAAATGTG
22896966 AAAATGTG
1 AAAATGTG
22896974 AAAATGTG
1 AAAATGTG
22896982 AAAATGTG
1 AAAATGTG
22896990 A
1 A
22896991 GGGCTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (8 bp):
AAAATGTG
Found at i:22902416 original size:34 final size:33
Alignment explanation
Indices: 22902339--22902419 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 33
22902329 TATGTTTGCA
22902339 TACTGTACTGAAATGGGCTAGGGCCCAGACTGC
1 TACTGTACTGAAATGGGCTAGGGCCCAGACTGC
* * * * *
22902372 CACTAATACTGTAATGGGCTCA-GGCCCAGATTGT
1 TACT-GTACTGAAATGGGCT-AGGGCCCAGACTGC
22902406 TACTGCTACTGAAA
1 TACTG-TACTGAAA
22902420 GAGGGGCTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
33 3 0.08
34 33 0.89
35 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (33 bp):
TACTGTACTGAAATGGGCTAGGGCCCAGACTGC
Found at i:22909676 original size:40 final size:40
Alignment explanation
Indices: 22909632--22909762 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
22909622 GGACTAAGAT
* * * *
22909632 CCGAAGGTATTTGTGCGAGTTATTAATTCCGAGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATAAATTCCGGGTTAAGTC
* * **
22909672 CCGAAGGCCTTCGTGCGAGATACCAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATAAATTCCGGGTTAAGTC
* *
22909712 CCGAAGGCATTCGTTCGAGTCT-TAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGT-TATAAATTCCGGGTTAAGTC
22909752 CCGAAGGCATT
1 CCGAAGGCATT
22909763 GAATGAGTTA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 76 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATAAATTCCGGGTTAAGTC
Found at i:22916868 original size:40 final size:40
Alignment explanation
Indices: 22916771--22916954 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 40
22916761 TTGAATGCTG
* * * *
22916771 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
22916810 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * **
22916851 TCCGAGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
22916891 TCCGGGTTAAGTCCCGAAGGCATTCGTTCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
22916931 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22916955 GAATGAGTTA
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 107 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:22916975 original size:39 final size:40
Alignment explanation
Indices: 22916891--22917001 Score: 113
Period size: 40 Copynumber: 2.8 Consensus size: 40
22916881 AGATACCAAT
* *
22916891 TCCGGGTTAAGTCCCGAAGGCATTCG-TTCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAATCGAGTTCTAAAA
**
22916931 TCCGGGTTAAGTCCCGAAGGCATTGAAT-GAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAATCGAGTT-CTAAAA
* *
22916971 -CCGGGCTATGTCCCGAAGGCACTTGAA-CGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAATCGAG
22917002 GAGCTATATC
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
39 25 0.41
40 36 0.59
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAATCGAGTTCTAAAA
Found at i:22930970 original size:29 final size:29
Alignment explanation
Indices: 22930907--22930974 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
22930897 TAATCAACCA
22930907 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
22930936 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
22930965 CGCACACTTA
1 CGCACACTTA
22930975 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:22931115 original size:29 final size:30
Alignment explanation
Indices: 22931076--22931154 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22931066 CTTAATAATC
22931076 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
22931106 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
22931135 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22931155 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:22939115 original size:29 final size:29
Alignment explanation
Indices: 22939052--22939119 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
22939042 TAATCAACCA
22939052 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
22939081 CACACACTTAGTGTCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
22939110 CGCACACTTA
1 CGCACACTTA
22939120 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:22939263 original size:29 final size:30
Alignment explanation
Indices: 22939228--22939299 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
22939218 ATCAACCGCA
*
22939228 CACACTTAGTGCCATGTAC-TTTAAACTCG
1 CACACTTAGTGCCATGTACATTTAAACCCG
22939257 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCG
22939286 CACACTTAGTGCCA
1 CACACTTAGTGCCA
22939300 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCG
Found at i:22948537 original size:31 final size:31
Alignment explanation
Indices: 22948499--22948561 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
22948489 ACGTTTGAAA
*
22948499 TGGACATTTGAAATGGAAGCACATGGCCGTG
1 TGGACATTCGAAATGGAAGCACATGGCCGTG
*
22948530 TGGACATTCGAAATGGAAGCACATGGTCGTG
1 TGGACATTCGAAATGGAAGCACATGGCCGTG
22948561 T
1 T
22948562 CCCAACCCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.24
Consensus pattern (31 bp):
TGGACATTCGAAATGGAAGCACATGGCCGTG
Found at i:22951002 original size:29 final size:29
Alignment explanation
Indices: 22950967--22951040 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
22950957 GTTGTGAGAT
* * *
22950967 TGGCACTAAGTGTGTGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
22950996 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
22951025 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22951041 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:22955171 original size:25 final size:25
Alignment explanation
Indices: 22955142--22955189 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22955132 TTATAATATG
* * *
22955142 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
22955167 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
22955190 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:22955240 original size:9 final size:9
Alignment explanation
Indices: 22955228--22955304 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
22955218 TTTGATAAAC
22955228 ATGATATGT
1 ATGATATGT
*
22955237 ATGATATGCAC
1 ATGATATG--T
22955248 ATGATATGT
1 ATGATATGT
*
22955257 ATGATATGCAC
1 ATGATATG--T
*
22955268 ATGACATGT
1 ATGATATGT
*
22955277 ATGATATGCAC
1 ATGATATG--T
*
22955288 ATGATATCT
1 ATGATATGT
22955297 ATGATATG
1 ATGATATG
22955305 CACACGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:22955251 original size:20 final size:20
Alignment explanation
Indices: 22955226--22955308 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
22955216 ATTTTGATAA
22955226 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22955246 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22955266 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22955286 ACATGATATCTATGATATGC
1 ACATGATATGTATGATATGC
22955306 ACA
1 ACA
22955309 CGAGATGTTC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22955253 original size:11 final size:11
Alignment explanation
Indices: 22955237--22955308 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
22955227 CATGATATGT
22955237 ATGATATGCAC
1 ATGATATGCAC
*
22955248 ATGATATG--T
1 ATGATATGCAC
22955257 ATGATATGCAC
1 ATGATATGCAC
* *
22955268 ATGACATG--T
1 ATGATATGCAC
22955277 ATGATATGCAC
1 ATGATATGCAC
*
22955288 ATGATAT-C-T
1 ATGATATGCAC
22955297 ATGATATGCAC
1 ATGATATGCAC
22955308 A
1 A
22955309 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 22 0.47
10 2 0.04
11 23 0.49
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22955395 original size:24 final size:24
Alignment explanation
Indices: 22955363--22955505 Score: 220
Period size: 24 Copynumber: 6.0 Consensus size: 24
22955353 AGGAAGTGCA
22955363 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22955387 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22955411 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22955435 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22955458 AAAAAGAGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
22955482 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22955506 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
23 29 0.26
24 66 0.59
25 16 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:22955457 original size:47 final size:48
Alignment explanation
Indices: 22955362--22955484 Score: 214
Period size: 47 Copynumber: 2.6 Consensus size: 48
22955352 GAGGAAGTGC
22955362 AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
22955411 -AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
22955458 AAAAAGAGCTT-TGCCCCAGTTATTAAA
1 AAAAAGGGCTTATGCCCCAGTTATTAAA
22955485 AGAGGCTAGG
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
47 39 0.54
48 33 0.46
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (48 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:22955480 original size:71 final size:72
Alignment explanation
Indices: 22955364--22955505 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 72
22955354 GGAAGTGCAA
* *
22955364 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTC
22955427 CAGTTATT
65 CAGTTATT
22955435 AAAGGGCTTATGCCCCAGTTATTAAAAAGAGCTT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAGGGCTTATGCCCCAGTTATT-AAAAGAGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTC
22955499 CAGTTAT
65 CAGTTAT
22955506 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
71 46 0.70
72 20 0.30
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
AGTTATT
Found at i:22962422 original size:9 final size:9
Alignment explanation
Indices: 22962408--22962484 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
22962398 TAGTGTAAAC
22962408 ATGATATGT
1 ATGATATGT
*
22962417 ATGATATGCAC
1 ATGATATG--T
22962428 ATGATATGT
1 ATGATATGT
*
22962437 ATGATATGCAC
1 ATGATATG--T
*
22962448 ATGACATGT
1 ATGATATGT
*
22962457 ATGATATGCAC
1 ATGATATG--T
22962468 ATGATATGT
1 ATGATATGT
22962477 ATGATATG
1 ATGATATG
22962485 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:22962433 original size:11 final size:11
Alignment explanation
Indices: 22962417--22962488 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
22962407 CATGATATGT
22962417 ATGATATGCAC
1 ATGATATGCAC
*
22962428 ATGATATG--T
1 ATGATATGCAC
22962437 ATGATATGCAC
1 ATGATATGCAC
* *
22962448 ATGACATG--T
1 ATGATATGCAC
22962457 ATGATATGCAC
1 ATGATATGCAC
*
22962468 ATGATATG--T
1 ATGATATGCAC
22962477 ATGATATGCAC
1 ATGATATGCAC
22962488 A
1 A
22962489 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22962496 original size:20 final size:20
Alignment explanation
Indices: 22962406--22962488 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
22962396 CCTAGTGTAA
22962406 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22962426 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22962446 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
22962466 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22962486 ACA
1 ACA
22962489 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22962575 original size:24 final size:24
Alignment explanation
Indices: 22962543--22962710 Score: 245
Period size: 24 Copynumber: 7.0 Consensus size: 24
22962533 AGGAAGTGCA
22962543 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22962567 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22962591 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22962615 AAAAGGGGTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22962639 -AAAGGGCTTATGCCCTC-GTTATT
1 AAAAGGGCTTATGCCC-CAGTTATT
22962662 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
22962687 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22962711 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 3, Indels: 15
0.88 0.02 0.10
Matches are distributed among these distances:
23 26 0.20
24 79 0.59
25 19 0.14
26 9 0.07
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:22962939 original size:31 final size:31
Alignment explanation
Indices: 22962903--22962966 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
22962893 CGTTTACAGT
*
22962903 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
22962934 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
22962965 AA
1 AA
22962967 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:22974144 original size:37 final size:37
Alignment explanation
Indices: 22974094--22974172 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22974084 TTATTACGAA
* * *
22974094 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTAATCGG
*
22974131 GTCTTACCCGGACAAAATCCCCACACGTAGTAATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTAATCGG
22974168 GTCTT
1 GTCTT
22974173 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTAATCGG
Found at i:22974369 original size:47 final size:47
Alignment explanation
Indices: 22974291--22975100 Score: 1275
Period size: 47 Copynumber: 17.1 Consensus size: 47
22974281 CCCTTCGGGA
* * * * * *
22974291 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
22974338 CCTGTCACATATATATACTTTCACAATCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974385 CGTATCAC-TATAT-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974430 CGTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974479 CCTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
22974528 CTTATCACGTATATATACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22974575 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974624 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974673 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974720 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22974767 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22974814 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974860 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22974907 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974954 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22975001 CTTATCACATATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22975050 CTTATCATATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22975097 CTTA
1 CTTA
22975101 CTATCATTTC
Statistics
Matches: 719, Mismatches: 35, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
45 38 0.05
46 51 0.07
47 403 0.56
48 5 0.01
49 222 0.31
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22974471 original size:94 final size:96
Alignment explanation
Indices: 22974291--22975100 Score: 1286
Period size: 96 Copynumber: 8.5 Consensus size: 96
22974281 CCCTTCGGGA
* * * * * * * *
22974291 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
22974354 ACTTTCACAATCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
22974385 CGTATCAC-TATAT-CACTTTCACATTCATCACATCGGCCATTAGGCCGTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
22974448 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
22974479 CCTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
22974544 --ACTTTCACATTCATCACATCGGCCATTAGAC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
22974575 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGACCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
22974640 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974673 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
22974736 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
22974767 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
22974829 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22974860 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
22974923 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22974954 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
22975019 ACTTTCACGTTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
22975050 CTTATCATATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
22975101 CTATCATTTC
Statistics
Matches: 674, Mismatches: 29, Indels: 24
0.93 0.04 0.03
Matches are distributed among these distances:
91 6 0.01
92 41 0.06
93 88 0.13
94 222 0.33
96 229 0.34
97 5 0.01
98 83 0.12
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22978459 original size:40 final size:40
Alignment explanation
Indices: 22978414--22978568 Score: 215
Period size: 39 Copynumber: 3.9 Consensus size: 40
22978404 CGAATACACG
* * *
22978414 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
22978454 ACACCAGCACGAATGCTCTTCGGAACTTAGCCC-GATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
22978493 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
22978532 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
22978569 TTAGTAACTC
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
38 2 0.02
39 66 0.65
40 34 0.33
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:22978646 original size:40 final size:39
Alignment explanation
Indices: 22978431--22978646 Score: 183
Period size: 39 Copynumber: 5.5 Consensus size: 39
22978421 CATGATTGCT
* * *
22978431 CTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATGC
* * *
22978470 TCTTCGGAACTTAGCCC-GATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATGC
* *
22978509 TCTTCGGGACTTAG-CCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATGC
* * * *
22978548 TCTTTGGGACTTAGCCCGGATTTAGTAACTCGCACTAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATGC
* * *
22978589 CTTCGGG-CTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAATGC
22978628 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
22978647 CATCATTCGA
Statistics
Matches: 148, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 92 0.62
40 42 0.28
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATGC
Found at i:22978989 original size:29 final size:29
Alignment explanation
Indices: 22978950--22979028 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
22978940 CTTAATAATC
*
22978950 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
22978980 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
22979009 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22979029 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:22980860 original size:37 final size:37
Alignment explanation
Indices: 22980810--22980888 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22980800 TTATTACGAA
* * *
22980810 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
22980847 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
22980884 GTCTT
1 GTCTT
22980889 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:22981204 original size:22 final size:22
Alignment explanation
Indices: 22981176--22981249 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
22981166 TTTCACATTC
22981176 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
22981198 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
22981220 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
22981243 ATCACAT
1 ATCACAT
22981250 ATATATACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:22981272 original size:47 final size:47
Alignment explanation
Indices: 22981006--22981764 Score: 1212
Period size: 47 Copynumber: 16.1 Consensus size: 47
22980996 GCCCTTCGGA
* * * * * *
22981006 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22981053 CCTGTCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981098 C-TATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981146 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981195 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981240 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981287 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981335 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981382 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981429 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981476 C-TATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
22981524 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981570 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981619 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981666 CTTATCACATATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981715 CTTATCATATATATACACTTTCAC-TTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981761 CTTA
1 CTTA
22981765 CTATCATTTC
Statistics
Matches: 672, Mismatches: 20, Indels: 41
0.92 0.03 0.06
Matches are distributed among these distances:
44 2 0.00
45 72 0.11
46 94 0.14
47 243 0.36
48 110 0.16
49 151 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22981300 original size:142 final size:141
Alignment explanation
Indices: 22981008--22981764 Score: 1214
Period size: 142 Copynumber: 5.4 Consensus size: 141
22980998 CCTTCGGACT
* * * * * * * *
22981008 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATACACT
*
22981070 TTCACATTCATCACATCGGCCATTAGGCC-TATCACACATATATACACTTTCACATTCATCACAT
66 TTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATATATACTTTCACATTCATCACAT
22981134 CGGCCATTAGGCCC
129 CGGCCATTAGG-CC
22981148 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATACACT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATACACT
22981212 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATCG
22981277 GCCATTAGGCC
131 GCCATTAGGCC
22981288 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATACAC
22981353 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATC
22981418 GGCCATTAGGCC
130 GGCCATTAGGCC
22981430 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATGTATA
1 -TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TA--TATA
*
22981492 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATACACTTTCACATTCATCAC
62 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCAC
22981556 ATCGGCCATTAGGCC
127 ATCGGCCATTAGGCC
22981571 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACA
1 -TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATACA
*
22981636 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACGTTCATCAC
64 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--ACTTTCACATTCATCAC
22981701 ATCGGCCATTAGGCC
127 ATCGGCCATTAGGCC
22981716 T-T-ATCATATATATACACTTTCAC-TTCATCACATCGGCCATTAGGCCTTA
1 TATCA-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
22981765 CTATCATTTC
Statistics
Matches: 588, Mismatches: 14, Indels: 28
0.93 0.02 0.04
Matches are distributed among these distances:
140 73 0.12
141 126 0.21
142 274 0.47
143 75 0.13
144 9 0.02
145 31 0.05
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACATCG
GCCATTAGGCC
Found at i:22981326 original size:189 final size:188
Alignment explanation
Indices: 22981006--22981764 Score: 1258
Period size: 189 Copynumber: 4.0 Consensus size: 188
22980996 GCCCTTCGGA
* * * * * * * *
22981006 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATAT--AC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22981069 TTTCACATTCATCACATCGGCCATTAGGCCTATCACACATATATACACTTTCACATTCATCACAT
65 TTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACAT
*
22981134 CGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981195 CTTATCAC-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACT
1 CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
22981259 TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACATC
66 TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACATC
*
22981324 GGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981382 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22981447 TTTCACATTCATCACATCGGCCATTAGGCCTATCACATATGTATACACTTTCACATTCATCACAT
65 TTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACAT
22981512 CGGCCATTAGGCCTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22981570 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22981635 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACGTTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCATCA
*
22981700 CATCGGCCATTAGGCCTTATCATATATATACACTTTCAC-TTCATCACATCGGCCATTAGGC
127 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22981761 CTTA
1 CTTA
22981765 CTATCATTTC
Statistics
Matches: 543, Mismatches: 19, Indels: 14
0.94 0.03 0.02
Matches are distributed among these distances:
187 89 0.16
188 46 0.08
189 230 0.42
190 85 0.16
191 78 0.14
192 15 0.03
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22984266 original size:49 final size:49
Alignment explanation
Indices: 22984206--22984335 Score: 129
Period size: 49 Copynumber: 2.7 Consensus size: 49
22984196 GAGGTGTCAA
* * *
22984206 TGTAAGACCATGTTTGGGACATGTC-TCGGCACGGATATGT-GAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGACATCGGCACCGAT-T-TCAAGAGCTAG
* * * * * * *
22984255 TGTAAGACCATGTCTGGTACATGACGTTGGCCCCGATTTCAATAGTTAG
1 TGTAAGACCATGTTTGGGACATGACATCGGCACCGATTTCAAGAGCTAG
*
22984304 TGTAAGACCATGTTTGGGACATGGCATCGGCA
1 TGTAAGACCATGTTTGGGACATGACATCGGCA
22984336 TTATACCCTA
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
48 1 0.02
49 55 0.86
50 8 0.12
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (49 bp):
TGTAAGACCATGTTTGGGACATGACATCGGCACCGATTTCAAGAGCTAG
Found at i:22985222 original size:70 final size:70
Alignment explanation
Indices: 22985109--22985247 Score: 224
Period size: 70 Copynumber: 2.0 Consensus size: 70
22985099 TGCTTGGTCG
* * *
22985109 TGTGTCCCCTGCACATAAAATTTGCAAGTCAGTATGCATGGTAGTAAACACACGGGTAGAGACAC
1 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTACGCATGGTAGTAAACACACGGGAAGAGACAC
22985174 GACCA
66 GACCA
* * *
22985179 TGTGTTCCCTGCACATAAAATTTACAAGTCAGTACGTATGGTAGTAAACGCACGGGAAGAGACAC
1 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTACGCATGGTAGTAAACACACGGGAAGAGACAC
22985244 GACC
66 GACC
22985248 GCGTATCTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 63 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (70 bp):
TGTGTCCCCTGCACATAAAATTTACAAGTCAGTACGCATGGTAGTAAACACACGGGAAGAGACAC
GACCA
Found at i:22987686 original size:43 final size:42
Alignment explanation
Indices: 22987629--22987785 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
22987619 AACATATACA
*
22987629 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAA-ATCG
* * * * *
22987672 ATACCACTATCCCAGACAG-AGTCTTACATGAAATC-AAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAAAT-CG
* * * *
22987714 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCA-AAATCG
22987758 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
22987786 CAAAACCACA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 27 0.29
43 30 0.33
44 30 0.33
45 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAAATCG
Found at i:22990304 original size:40 final size:40
Alignment explanation
Indices: 22990227--22990432 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
22990217 AAACCAAGTA
* *
22990227 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
22990266 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22990306 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * *
22990346 CCTTCGGGACTTAGCCCGGATATAATCGCTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22990386 CCTTCGGGACATAGCCCGGATATAGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22990426 CCTTCGG
1 CCTTCGG
22990433 ATCTTAGTCC
Statistics
Matches: 146, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 14 0.10
40 132 0.90
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22998331 original size:40 final size:40
Alignment explanation
Indices: 22998254--22998459 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
22998244 AAACCAAGTA
* *
22998254 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
22998293 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22998333 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * *
22998373 CCTTCGGGACTTAGCCCGGATATAATGGCTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22998413 CCTTCGGGACATAGCCCGGATATAGCAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22998453 CCTTCGG
1 CCTTCGG
22998460 ATCTTAGTCC
Statistics
Matches: 148, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 14 0.09
40 134 0.91
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23002921 original size:45 final size:45
Alignment explanation
Indices: 23002865--23002997 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
23002855 AAACTATGTG
* * *
23002865 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGCC
1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
*
23002910 ATCTAAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
*
23002955 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATGTATGTG
1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTG
23002998 ACACATGTTT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
Found at i:23002942 original size:21 final size:21
Alignment explanation
Indices: 23002918--23002987 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
23002908 CCATCTAAAC
23002918 TCATTAAATTATGGTCTGAGT
1 TCATTAAATTATGGTCTGAGT
* * **
23002939 TCATGATA-TATGTGCCATCTGAAC
1 TCATTAAATTATG-G---TCTGAGT
23002963 TCATTAAATTATGGTCTGAGT
1 TCATTAAATTATGGTCTGAGT
23002984 TCAT
1 TCAT
23002988 GATGTATGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
24 12 0.33
25 4 0.11
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (21 bp):
TCATTAAATTATGGTCTGAGT
Found at i:23002959 original size:24 final size:24
Alignment explanation
Indices: 23002887--23002960 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
23002877 TGAGTTGTGG
23002887 TCTGAGTTCATGATATATGTGCCA
1 TCTGAGTTCATGATATATGTGCCA
* ** * *
23002911 TCTAAACTCATTAAATTATG-G---
1 TCTGAGTTCATGATA-TATGTGCCA
23002932 TCTGAGTTCATGATATATGTGCCA
1 TCTGAGTTCATGATATATGTGCCA
23002956 TCTGA
1 TCTGA
23002961 ACTCATTAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 4 0.11
21 11 0.31
24 16 0.46
25 4 0.11
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (24 bp):
TCTGAGTTCATGATATATGTGCCA
Found at i:23004650 original size:18 final size:18
Alignment explanation
Indices: 23004627--23004682 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
23004617 TTTATTATTC
23004627 TATATTTTATTTATAAAT
1 TATATTTTATTTATAAAT
*
23004645 TATATTTTATTATATATAT
1 TATATTTTATT-TATAAAT
23004664 TAT-TTTTATTT-TAAAT
1 TATATTTTATTTATAAAT
23004680 TAT
1 TAT
23004683 GTATTATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 7 0.20
17 1 0.03
18 18 0.51
19 9 0.26
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATATTTTATTTATAAAT
Found at i:23004679 original size:35 final size:32
Alignment explanation
Indices: 23004612--23004693 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 32
23004602 ATCCATCATG
*
23004612 TTATTTTTATTATTCTATATTTTATTTATAAA
1 TTATTTTTATTATTATATATTTTATTTATAAA
23004644 TTATATTTTATTATATATATTATTTTTATTT-TAAA
1 TTAT-TTTTATTAT-TATA-TA-TTTTATTTATAAA
*
23004679 TTATGTATTATTATT
1 TTAT-TTTTATTATT
23004694 CATTAATTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
32 4 0.09
33 9 0.21
34 4 0.09
35 18 0.42
36 8 0.19
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (32 bp):
TTATTTTTATTATTATATATTTTATTTATAAA
Found at i:23007392 original size:85 final size:85
Alignment explanation
Indices: 23007249--23007427 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
23007239 GGCCGGCCAT
23007249 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
23007314 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
23007334 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATCAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
23007399 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
23007419 GAGCATGGG
1 GAGCATGGG
23007428 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:23008695 original size:39 final size:40
Alignment explanation
Indices: 23008648--23008779 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
23008638 GGACTAAGAT
23008648 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGTC
* * *
23008687 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGTC
* * *
23008727 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGATAAGTC
23008767 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23008780 AACGAGTAGC
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 36 0.43
40 47 0.57
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGTC
Found at i:23008793 original size:40 final size:40
Alignment explanation
Indices: 23008596--23008786 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 40
23008586 CGAATGATGT
* ** * * * *
23008596 CCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTATAA
* ** *
23008636 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGTTACTATA-A
* * **
23008676 CCGGGATAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAA
* **
23008714 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAA
*
23008755 CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGT
23008787 AGCTATATCC
Statistics
Matches: 129, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.27
40 84 0.65
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAA
Found at i:23008801 original size:79 final size:79
Alignment explanation
Indices: 23008648--23008802 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
23008638 GGACTAAGAT
* **
23008648 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGATAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGATAAGCCCGAAGGCATTGGAACGAGTTACTAA
23008713 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
23008727 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGATAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
23008790 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
23008803 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGATAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:23011942 original size:85 final size:85
Alignment explanation
Indices: 23011799--23011975 Score: 345
Period size: 85 Copynumber: 2.1 Consensus size: 85
23011789 GGCCGGCCAT
*
23011799 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGGTGGGGTAGTGCATTAT
23011864 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
23011884 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGGTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGGTGGGGTAGTGCATTAT
23011949 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
23011969 GAGCATG
1 GAGCATG
23011976 CGCAATAAAA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGGTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:23013212 original size:40 final size:39
Alignment explanation
Indices: 23013138--23013341 Score: 216
Period size: 40 Copynumber: 5.1 Consensus size: 39
23013128 TCGAATGATG
* *
23013138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
*
23013178 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
23013217 TTCCGGGCTAAGCCCGAAGGCGTTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
*
23013257 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTATA
* * **
23013297 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATA
23013337 TCCGG
1 TCCGG
23013342 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 37 0.27
40 93 0.67
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:23013275 original size:79 final size:80
Alignment explanation
Indices: 23013138--23013317 Score: 233
Period size: 79 Copynumber: 2.3 Consensus size: 80
23013128 TCGAATGATG
* *
23013138 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTT
23013203 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
23013217 TTCCGGGCTAAG-CCCGAAGGCGTTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTTACCAAATCCGGACTAAGATC-CGAAGGCA
23013279 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
23013297 ACCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
23013318 ATTTGAACGA
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.67
80 27 0.31
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:23013344 original size:79 final size:78
Alignment explanation
Indices: 23013168--23013355 Score: 204
Period size: 79 Copynumber: 2.4 Consensus size: 78
23013158 CTTTGTGCTA
* * *
23013168 AGTTACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCG
1 AGTTACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCG
* **
23013233 AAGGCGTTGGTGCG
65 AAGGCATTGGAACG
* *
23013247 AGTTACTAAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 AGTTACTATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-C
*
23013310 CCGAAGGCATTTGAACG
62 CCGAAGGCATTGGAACG
23013327 AG-TAGCTATATCCGGTTAA-ATTCCGAAGG
1 AGTTA-CTATATCCGGTTAAGA-TCCGAAGG
23013356 TACGTGATTC
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
78 4 0.04
79 61 0.66
80 27 0.29
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
AGTTACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGA
AGGCATTGGAACG
Found at i:23016757 original size:43 final size:43
Alignment explanation
Indices: 23016696--23016806 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
23016686 CGGCATTACA
* *
23016696 CCTGCTAGGCACAAAGGCCCGAATACACATGACCGACACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAG
* *
23016739 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAG
23016782 CCTGCTAGGCACGAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
23016807 TAATACCAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAG
Found at i:23016853 original size:38 final size:38
Alignment explanation
Indices: 23016799--23016882 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
23016789 GGCACGAAGG
* * * *
23016799 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
23016837 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAA
23016875 CCCGAATA
1 CCCGAATA
23016883 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:23017146 original size:53 final size:53
Alignment explanation
Indices: 23017048--23017153 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
23017038 TCACCATTCA
23017048 AACTTAACCCATAGTGACCATTCGACTATAAGTCATATACATAAATTATTTAT
1 AACTTAACCCATAGTGACCATTCGACTATAAGTCATATACATAAATTATTTAT
*
23017101 AACTTAACCCATAGTGACCATTCGACTATAAGTCATATGCATAAATTATTTAT
1 AACTTAACCCATAGTGACCATTCGACTATAAGTCATATACATAAATTATTTAT
23017154 CACACAACTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (53 bp):
AACTTAACCCATAGTGACCATTCGACTATAAGTCATATACATAAATTATTTAT
Found at i:23031750 original size:47 final size:47
Alignment explanation
Indices: 23031699--23031803 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
23031689 TAGTATTAAT
*
23031699 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
23031746 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
23031793 AATGTGATAAG
1 TATGTGATAAG
23031804 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:23037800 original size:27 final size:28
Alignment explanation
Indices: 23037716--23037813 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
23037706 CATGAGATTG
* * * *
23037716 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
23037745 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
23037773 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23037800 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
23037814 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:23037824 original size:27 final size:27
Alignment explanation
Indices: 23037744--23037826 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
23037734 TAAATTGTAC
* *
23037744 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23037772 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
23037799 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
23037826 A
1 A
23037827 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:23037827 original size:29 final size:27
Alignment explanation
Indices: 23037716--23037827 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
23037706 CATGAGATTG
** * *
23037716 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
23037745 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
23037773 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
23037800 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
23037828 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:23039383 original size:40 final size:40
Alignment explanation
Indices: 23039324--23039535 Score: 153
Period size: 40 Copynumber: 5.1 Consensus size: 40
23039314 TTTACGCTAA
* * *
23039324 AGCAGATCCAAGATCATTTGGCATCTCTGTGTTGTCAGAT
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
23039364 AGCAGATCGAAGCA-GATTTGGCATCTTTGTATTGTCAGAG
1 AGCAGATCCAAG-ATGATTTGGCATCTCTGTATTGTCAGAG
* *
23039404 AGCAGATCCAAGATGATTTGGAATCT-TCGTATT-TGACGAGG
1 AGCAGATCCAAGATGATTTGGCATCTCT-GTATTGTCA-GA-G
* * * *
23039445 GGCAAATCCAAGAAGCAGATTTGGCATC-CTTGTATTGTCAGGG
1 AGCAGATCCAAG-A--TGATTTGGCATCTC-TGTATTGTCAGAG
* * * *
23039488 AGTAGATCGAAGATAGTAGATTTGGCATCTCTGTATGGTTAGAG
1 AGCAGATCCAAG--A-T-GATTTGGCATCTCTGTATTGTCAGAG
23039532 AGCA
1 AGCA
23039536 AATAAGAGAT
Statistics
Matches: 133, Mismatches: 25, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
39 4 0.03
40 62 0.47
41 12 0.09
42 1 0.01
43 9 0.07
44 41 0.31
45 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (40 bp):
AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
Found at i:23039687 original size:44 final size:44
Alignment explanation
Indices: 23039324--23039683 Score: 230
Period size: 44 Copynumber: 8.6 Consensus size: 44
23039314 TTTACGCTAA
* *
23039324 AGCAGATCCAAGAT--C--ATTTGGCATCTCTGTGTTGTCAGAT
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
*
23039364 AGCAGAT-C--GA-AGCAGATTTGGCATCTTTGTATTGTCAGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* *
23039404 AGCAGATCCAAGAT----GATTTGGAATCT-TCGTATT-TGACGAGG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCT-GTATTGTCA-GA-G
* * *
23039445 GGCAAATCCAAGA-AGCAGATTTGGCATC-CTTGTATTGTCAGGG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTC-TGTATTGTCAGAG
* * * * *
23039488 AGTAGATCGAAGATAGTAGATTTGGCATCTCTGTATGGTTAGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* * * * * * * *
23039532 AGCAAAT-AAGAGATAGTAGACTTGACATATTTGTATTCGACA-AGG
1 AGCAGATCCA-AGATAGCAGATTTGGCATCTCTGTATT-GTCAGA-G
* * *
23039577 AGTAAATCCAAGA-AGCAGATTTGGCA--TAT-TA-T-T-AGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* * *
23039614 AGCAGATCGAAGACAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
*
23039658 AGCAGATCGAAGATAGCAGATTTGGC
1 AGCAGATCCAAGATAGCAGATTTGGC
23039684 GTCTTTGTGC
Statistics
Matches: 247, Mismatches: 41, Indels: 60
0.71 0.12 0.17
Matches are distributed among these distances:
37 14 0.06
38 14 0.06
39 4 0.02
40 57 0.23
41 17 0.07
42 3 0.01
43 14 0.06
44 107 0.43
45 16 0.06
46 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
Found at i:23039698 original size:126 final size:130
Alignment explanation
Indices: 23039339--23039691 Score: 345
Period size: 126 Copynumber: 2.8 Consensus size: 130
23039329 ATCCAAGATC
* * * *
23039339 ATTTGGCATCTCTGTGTTGTCAGATAGCAGATC---GA-AGCAGATTTGGCATCTTTGTATTGTC
1 ATTTGGCATC-ATGTATTGTCAGAGAGCAGATCGAAGACAGCAGATTTGGCATCTCTGTATTGTC
* * * * * *
23039400 AGAGAGCAGATCCAAGAT---GATTTGGAATCTTCGTATTTGACGAGGGGCAAATCCAAGAAGCA
65 AGAGAGCAGATCAAAGATAGAGATTTGGCATCTTTGTATTCGACAAGGAGCAAATCCAAGAAGCA
23039462 G
130 G
* * * * * * *
23039463 ATTTGGCATCCTTGTATTGTCAGGGAGTAGATCGAAGATAGTAGATTTGGCATCTCTGTATGGTT
1 ATTTGGCAT-CATGTATTGTCAGAGAGCAGATCGAAGACAGCAGATTTGGCATCTCTGTATTGTC
* * * * *
23039528 AGAGAGCAAAT-AAGAGATAGTAGACTTGACATATTTGTATTCGACAAGGAGTAAATCCAAGAAG
65 AGAGAGCAGATCAA-AGATAG-AGATTTGGCATCTTTGTATTCGACAAGGAGCAAATCCAAGAAG
23039592 CAG
128 CAG
*
23039595 ATTTGGCAT-AT-TA-T-T-AGAGAGCAGATCGAAGACAGCAGATTTGGCGTCTCTGTATTGTCA
1 ATTTGGCATCATGTATTGTCAGAGAGCAGATCGAAGACAGCAGATTTGGCATCTCTGTATTGTCA
* *
23039655 GAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGT
66 GAGAGCAGATCAAAGATAG-AGATTTGGCATCTTTGT
23039692 GCTCGACGGA
Statistics
Matches: 183, Mismatches: 35, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
124 26 0.14
125 1 0.01
126 66 0.36
127 5 0.03
128 37 0.20
129 2 0.01
130 1 0.01
132 45 0.25
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (130 bp):
ATTTGGCATCATGTATTGTCAGAGAGCAGATCGAAGACAGCAGATTTGGCATCTCTGTATTGTCA
GAGAGCAGATCAAAGATAGAGATTTGGCATCTTTGTATTCGACAAGGAGCAAATCCAAGAAGCAG
Found at i:23041287 original size:18 final size:17
Alignment explanation
Indices: 23041264--23041329 Score: 71
Period size: 18 Copynumber: 3.8 Consensus size: 17
23041254 TTCATTATTC
23041264 TATATTTTACTTATAAAT
1 TATATTTTA-TTATAAAT
23041282 TATATTTTATTATATATAT
1 TATATTTTATTATA-A-AT
*
23041301 TAT-TTTTATTTTAAAT
1 TATATTTTATTATAAAT
* *
23041317 TATGTATTATTAT
1 TATATTTTATTAT
23041330 TCATTAACTG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
16 5 0.12
17 13 0.31
18 19 0.45
19 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TATATTTTATTATAAAT
Found at i:23041306 original size:35 final size:33
Alignment explanation
Indices: 23041250--23041330 Score: 83
Period size: 35 Copynumber: 2.4 Consensus size: 33
23041240 TCCATCATGT
*
23041250 TATTTTCATTATTCTATA-TTTTACTTATAAATTA
1 TATTTT-ATTATTATATATTTTTA-TTATAAATTA
*
23041284 TATTTTATTATATATATTATTTTTATTTTAAATTA
1 TATTTTATTAT-TATA-TATTTTTATTATAAATTA
* *
23041319 TGTATTATTATT
1 TATTTTATTATT
23041331 CATTAACTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
33 5 0.12
34 10 0.25
35 20 0.50
36 5 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (33 bp):
TATTTTATTATTATATATTTTTATTATAAATTA
Found at i:23041477 original size:22 final size:23
Alignment explanation
Indices: 23041430--23041479 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
23041420 CATTATATTT
* *
23041430 TATTTATATTTTATTCTATATCA
1 TATTTATATTTTATCCTATATAA
23041453 TATTATATATTTT-TCCT-TATAA
1 TATT-TATATTTTATCCTATATAA
23041475 TATTT
1 TATTT
23041480 TTCCTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 1 0.04
22 8 0.33
23 7 0.29
24 8 0.33
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (23 bp):
TATTTATATTTTATCCTATATAA
Found at i:23041489 original size:17 final size:14
Alignment explanation
Indices: 23041455--23041485 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
23041445 CTATATCATA
23041455 TTATATATTTTTCC
1 TTATATATTTTTCC
23041469 TTATAATATTTTTCC
1 TTAT-ATATTTTTCC
23041484 TT
1 TT
23041486 TTATTATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATATATTTTTCC
Found at i:23047335 original size:43 final size:43
Alignment explanation
Indices: 23047287--23047381 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 43
23047277 TCTCAGATAG
*
23047287 GGTCTTACACAAAATCAT-ATA-ATGATGCCAATGTGCC-AGACAT
1 GGTCTTACACAAAATCATAATACA--ATGCCAATGT-CCTAAACAT
* **
23047330 TGTCTTACACGTAATCATAATACAATGCCAATGTCCTAAACAT
1 GGTCTTACACAAAATCATAATACAATGCCAATGTCCTAAACAT
23047373 GGTCTTACA
1 GGTCTTACA
23047382 TGTAATCACA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.05
43 38 0.86
44 3 0.07
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACACAAAATCATAATACAATGCCAATGTCCTAAACAT
Found at i:23052103 original size:11 final size:11
Alignment explanation
Indices: 23052087--23052116 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
23052077 CTTAAGTGAT
23052087 CACATGCCCGG
1 CACATGCCCGG
23052098 CACATGCCCGG
1 CACATGCCCGG
23052109 CACATGCC
1 CACATGCC
23052117 TAAAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.47, G:0.23, T:0.10
Consensus pattern (11 bp):
CACATGCCCGG
Found at i:23053231 original size:22 final size:22
Alignment explanation
Indices: 23053203--23053246 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
23053193 CTGCTGTAAG
23053203 GAATAATAATTAATTATTAAAT
1 GAATAATAATTAATTATTAAAT
23053225 GAATAATAATTAATTATTAAAT
1 GAATAATAATTAATTATTAAAT
23053247 TTACCCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (22 bp):
GAATAATAATTAATTATTAAAT
Found at i:23057455 original size:28 final size:28
Alignment explanation
Indices: 23057392--23057517 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
23057382 ATATTAAGTC
*
23057392 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
23057419 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
23057447 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
23057475 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
23057504 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23057518 CAATCTCATG
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.24
28 51 0.55
29 19 0.21
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:23057981 original size:12 final size:12
Alignment explanation
Indices: 23057964--23057990 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23057954 TGGGCATACT
23057964 TATGTATATATA
1 TATGTATATATA
23057976 TATGTATATATA
1 TATGTATATATA
23057988 TAT
1 TAT
23057991 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:23063878 original size:43 final size:43
Alignment explanation
Indices: 23063767--23063892 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 43
23063757 AATGCCAACG
* *
23063767 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCAAATA-CGATGCCACTA
* * *
23063810 TCCCAGATA-GAGTCTCACACG-AAATCAAATACGATGCCGA-TA
1 TCCCAGACATG-GTCTTACATGTAAATCAAATACGATGCC-ACTA
23063852 TCCCAGACATGGTCTTACATGTAAATCTCAAAT-CGATGCCA
1 TCCCAGACATGGTCTTACATGTAAA--TCAAATACGATGCCA
23063893 ACGTCCTAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
42 25 0.37
43 30 0.44
44 7 0.10
45 6 0.09
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATACGATGCCACTA
Found at i:23071203 original size:49 final size:49
Alignment explanation
Indices: 23071137--23071374 Score: 316
Period size: 49 Copynumber: 4.8 Consensus size: 49
23071127 TAGCCAAAGC
* * * *
23071137 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
23071186 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
23071235 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
23071285 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* *
23071336 T-TTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACA
23071375 TGCGACCTCA
Statistics
Matches: 168, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
49 89 0.53
50 44 0.26
51 34 0.20
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:23071317 original size:99 final size:100
Alignment explanation
Indices: 23071137--23071381 Score: 323
Period size: 99 Copynumber: 2.5 Consensus size: 100
23071127 TAGCCAAAGC
* * * * ** * *
23071137 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACATAG
23071202 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* *
23071235 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCTGATACACATA
*
23071300 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* ** * *
23071336 TTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
23071382 TCACAATAGA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 40 0.32
99 43 0.34
100 1 0.01
101 42 0.33
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACATAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:23082051 original size:30 final size:30
Alignment explanation
Indices: 23082017--23082073 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
23082007 ATCAATTTTC
**
23082017 AAGTCTAGGGGTAAAATGGTCATTTTGTAA
1 AAGTCTAGGGACAAAATGGTCATTTTGTAA
23082047 AAGTCTAGGGACAAAATGGTCATTTTG
1 AAGTCTAGGGACAAAATGGTCATTTTG
23082074 CCAAAAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (30 bp):
AAGTCTAGGGACAAAATGGTCATTTTGTAA
Found at i:23082659 original size:49 final size:49
Alignment explanation
Indices: 23082459--23082730 Score: 208
Period size: 48 Copynumber: 5.7 Consensus size: 49
23082449 TATGAGAGCT
* * * * * *
23082459 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATAT-ACAAG-C
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGA-AAGTC
* * * * *
23082506 TAGTGTAAGACCTGTCTGGGACATGG--T-GTCAGCG-T-GTTGTATGTC
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGTC
* * *
23082551 AGTGTAAGACCTGTCTGGGACATGG-ATTGACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGTC
* * * *
23082599 AGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGTC
* * * ** *
23082648 AGTATAAGACCTGTCCT-GGACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGT-CTGGGACATGGCATCGACATCGATAGATGAAAGTC
23082695 AGTGTAAGACCATGTCTGGGACATGGCATCGACATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
23082731 TTATCCCATG
Statistics
Matches: 177, Mismatches: 36, Indels: 22
0.75 0.15 0.09
Matches are distributed among these distances:
44 28 0.16
45 2 0.01
46 9 0.05
47 19 0.11
48 69 0.39
49 48 0.27
50 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGTC
Found at i:23082669 original size:97 final size:97
Alignment explanation
Indices: 23082548--23082725 Score: 245
Period size: 97 Copynumber: 1.8 Consensus size: 97
23082538 CGTGTTGTAT
* *
23082548 GTCAGTGTAAGACCTGTCTGGGACATGG-ATTGACATCGATAGATGAGAGCCAGTGTAAGACC-T
1 GTCAGTATAAGACCTGTCTGGGACATGGCATCGACATCGAT-G-TGAGAGCCAGTGTAAGACCAT
23082611 GTCTGGGACACGGCATCGGCCTCGATATATGAAA
64 GTCTGGGACACGGCATCGGCCTCGATATATGAAA
* * **
23082645 GTCAGTATAAGACCTGTCCT-GGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATG
1 GTCAGTATAAGACCTGT-CTGGGACATGGCATCGACATCGATGTGAGAGCCAGTGTAAGACCATG
*
23082709 TCTGGGACATGGCATCG
65 TCTGGGACACGGCATCG
23082726 ACATCTTATC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
96 17 0.24
97 43 0.61
98 11 0.15
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (97 bp):
GTCAGTATAAGACCTGTCTGGGACATGGCATCGACATCGATGTGAGAGCCAGTGTAAGACCATGT
CTGGGACACGGCATCGGCCTCGATATATGAAA
Found at i:23082719 original size:48 final size:47
Alignment explanation
Indices: 23082413--23082730 Score: 197
Period size: 48 Copynumber: 6.7 Consensus size: 47
23082403 TATGTGCGCT
* * * * * * *
23082413 AGTGTAAGACATGTTTGGGTCAT-GCATC-AGCATTGATATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CATCGATGTGAAAGCC
* * * * * *
23082459 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGA-GATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATG-T-GA-AAGCC
* * * * *
23082507 AGTGTAAGACCTGTCTGGGACATGG--T-GTCAGCG-TGTTGTATGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATG-TGAAAGCC
* *
23082551 AGTGTAAGACCTGTCTGGGACATGG-ATTGACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGAT-G-TGAAAGCC
* * * * *
23082599 AGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATCG--ATGTGAAAGCC
* * * **
23082648 AGTATAAGACCTGTCCT-GGACATGGCATCGACTTTGATGTGCTAGCC
1 AGTGTAAGACCTGT-CTGGGACATGGCATCGACATCGATGTGAAAGCC
23082695 AGTGTAAGACCATGTCTGGGACATGGCATCGACATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACATC
23082731 TTATCCCATG
Statistics
Matches: 210, Mismatches: 46, Indels: 30
0.73 0.16 0.10
Matches are distributed among these distances:
44 27 0.13
45 1 0.00
46 41 0.20
47 22 0.10
48 73 0.35
49 42 0.20
50 2 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATGTGAAAGCC
Found at i:23089624 original size:28 final size:28
Alignment explanation
Indices: 23089584--23089639 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
23089574 GAGCCATAAA
23089584 ATTTTATTCATATTTCAAAGCGTTCATT
1 ATTTTATTCATATTTCAAAGCGTTCATT
23089612 ATTTTATTCATATTTCAAAGCGTTCATT
1 ATTTTATTCATATTTCAAAGCGTTCATT
23089640 CTCTTACACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (28 bp):
ATTTTATTCATATTTCAAAGCGTTCATT
Found at i:23089651 original size:28 final size:28
Alignment explanation
Indices: 23089592--23089651 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
23089582 AAATTTTATT
* **
23089592 CATATTTCAAAGCGTTCATTATTTTATT
1 CATATTTCAAAGCGTTCATTATCTTACA
*
23089620 CATATTTCAAAGCGTTCATTCTCTTACA
1 CATATTTCAAAGCGTTCATTATCTTACA
23089648 CATA
1 CATA
23089652 GTCCCTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (28 bp):
CATATTTCAAAGCGTTCATTATCTTACA
Found at i:23101293 original size:48 final size:48
Alignment explanation
Indices: 23101215--23101393 Score: 250
Period size: 48 Copynumber: 3.7 Consensus size: 48
23101205 ATGCCAATCT
* *
23101215 CATGTCCCAGACATGGTCTTACATTGGCTCACGTAACAATGTCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGC
* *
23101263 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGC
* **
23101311 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGTTTATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGC
* * * * *
23101359 CATGTTCCAAACATGGTCTTATACGGGATCACATA
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATA
23101394 CTGTTTCCAT
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGC
Found at i:23103866 original size:6 final size:6
Alignment explanation
Indices: 23103850--23103902 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
23103840 ATACTAGAAT
* *
23103850 AAAAT- AAAATG AAAATG -AAATG AAAATG ATAATG ATAAT- AAAAT-
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
*
23103894 AAAAAG AAA
1 AAAATG AAA
23103903 CAAATAGCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
5 18 0.43
6 24 0.57
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (6 bp):
AAAATG
Found at i:23103870 original size:11 final size:11
Alignment explanation
Indices: 23103850--23103902 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
23103840 ATACTAGAAT
*
23103850 AAAATAAAATG
1 AAAATGAAATG
23103861 AAAATGAAATG
1 AAAATGAAATG
23103872 AAAATGATAATG
1 AAAATGA-AATG
* *
23103884 ATAATAAAAT-
1 AAAATGAAATG
*
23103894 AAAAAGAAA
1 AAAATGAAA
23103903 CAAATAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
10 6 0.17
11 20 0.57
12 9 0.26
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (11 bp):
AAAATGAAATG
Found at i:23104589 original size:75 final size:75
Alignment explanation
Indices: 23104501--23104647 Score: 206
Period size: 75 Copynumber: 2.0 Consensus size: 75
23104491 TCGGTTATCT
* * * *
23104501 GACTAGTGCTGGGTGCAATCTTTGTC-GATTTATTCGACTAGTGCTAGGCACATCATCATATTTA
1 GACTAGCGCTGGGTGCAACCCTTGTCAG-TTTATTCGACTAGTGCTAGGCACACCATCATATTTA
23104565 TCAGTTTATTG
65 TCAGTTTATTG
* * *
23104576 GACTAGCGCTGGGTGCAACCCTTGTCAGTTTATTTGACTAGTGCTAGGCACACCATTATATTTGT
1 GACTAGCGCTGGGTGCAACCCTTGTCAGTTTATTCGACTAGTGCTAGGCACACCATCATATTTAT
*
23104641 CGGTTTA
66 CAGTTTA
23104648 CCAAGCTAGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 62 0.98
76 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (75 bp):
GACTAGCGCTGGGTGCAACCCTTGTCAGTTTATTCGACTAGTGCTAGGCACACCATCATATTTAT
CAGTTTATTG
Found at i:23113952 original size:40 final size:40
Alignment explanation
Indices: 23113854--23114115 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
23113844 TCCTCGTTCA
* * * * *
23113854 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23113893 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
23113933 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23113973 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23114013 AATGCCTT-GGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
23114052 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23114092 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23114116 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 72 0.37
40 116 0.59
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23114031 original size:119 final size:119
Alignment explanation
Indices: 23113854--23114115 Score: 314
Period size: 119 Copynumber: 2.2 Consensus size: 119
23113844 TCCTCGTTCA
* * *
23113854 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* ** * *
23113919 TAACAACTCGCACGACTGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
23113972 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTT-GGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** * * * *
23114036 TTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
23114092 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
23114116 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 3 0.02
119 105 0.87
120 13 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:23114069 original size:79 final size:79
Alignment explanation
Indices: 23113854--23114115 Score: 307
Period size: 79 Copynumber: 3.3 Consensus size: 79
23113844 TCCTCGTTCA
* * * * *
23113854 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
23113919 TAACAACTCGCACG
66 TAACAACTCGCACG
* *
23113933 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
23113998 TTAATAACTCGCACG
65 TTAACAACTCGCACG
* * *
23114013 AATGCCTT-GGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * *
23114076 TATATTC-ACTTAGCAC-
64 TTTA-ACAAC-TCGCACG
* *
23114092 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23114116 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 91 0.58
80 64 0.41
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:23121793 original size:27 final size:27
Alignment explanation
Indices: 23121763--23121940 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23121753 ATATTGAGTC
* * * *
23121763 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23121790 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23121817 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23121845 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23121872 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23121899 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23121926 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23121941 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23121902 original size:82 final size:81
Alignment explanation
Indices: 23121784--23121939 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23121774 TGCTATATAA
* *
23121784 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23121849 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23121866 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23121930 CACTTAGTGC
65 CACTTAGTGC
23121940 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.