Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 77 of 253
Found at i:23130789 original size:27 final size:27
Alignment explanation
Indices: 23130759--23130812 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
23130749 CAGTAAAAGT
*
23130759 TATAAAAAAATTCAAACTTTAATAAAA
1 TATAAAAAAATTCAAAATTTAATAAAA
* *
23130786 TATAAAAAAATTTAAAATTTATTAAAA
1 TATAAAAAAATTCAAAATTTAATAAAA
23130813 ATTATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (27 bp):
TATAAAAAAATTCAAAATTTAATAAAA
Found at i:23130876 original size:21 final size:20
Alignment explanation
Indices: 23130782--23130880 Score: 84
Period size: 20 Copynumber: 5.2 Consensus size: 20
23130772 AAACTTTAAT
23130782 AAAATATA-AAAAAATT-T-
1 AAAATATATAAAAAATTATA
* * *
23130799 AAAATTTATTAAAAATTATT
1 AAAATATATAAAAAATTATA
**
23130819 AAAATATAT--AAAATCGTA
1 AAAATATATAAAAAATTATA
*
23130837 TAAATATATAAAAAATTATA
1 AAAATATATAAAAAATTATA
23130857 AAAATA-ATAAAAAAATTTATA
1 AAAATATAT-AAAAAA-TTATA
23130878 AAA
1 AAA
23130881 TACATTAAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
17 7 0.11
18 21 0.32
19 3 0.05
20 26 0.40
21 8 0.12
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (20 bp):
AAAATATATAAAAAATTATA
Found at i:23130890 original size:21 final size:20
Alignment explanation
Indices: 23130725--23130891 Score: 72
Period size: 18 Copynumber: 8.8 Consensus size: 20
23130715 GACATGTGAC
*
23130725 AAAAA-AATTAAAAAA-AAT
1 AAAAATAATTAAAAAATTAT
* * *
23130743 AAAAATCAGT-AAAAGTTAT
1 AAAAATAATTAAAAAATTAT
* **
23130762 AAAAA-AATTCAAACTTTA-
1 AAAAATAATTAAAAAATTAT
*
23130780 ATAAAAT-ATAAAAAAATT-T
1 A-AAAATAATTAAAAAATTAT
* *
23130799 AAAATTTATT-AAAAATTAT
1 AAAAATAATTAAAAAATTAT
* *
23130818 TAAAAT-A-TATAAAATCGTAT
1 AAAAATAATTAAAAAAT--TAT
*
23130838 AAATAT-A-TAAAAAATTAT
1 AAAAATAATTAAAAAATTAT
*
23130856 AAAAATAATAAAAAAATT-T
1 AAAAATAATTAAAAAATTAT
23130875 ATAAAATACATTAAAAA
1 A-AAAATA-ATTAAAAA
23130892 GGCTCTTTAA
Statistics
Matches: 111, Mismatches: 23, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
17 1 0.01
18 37 0.33
19 37 0.33
20 29 0.26
21 7 0.06
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAAATAATTAAAAAATTAT
Found at i:23131072 original size:9 final size:9
Alignment explanation
Indices: 23131058--23131267 Score: 56
Period size: 9 Copynumber: 22.0 Consensus size: 9
23131048 TTTTGGTAAG
23131058 ATAATTTTT
1 ATAATTTTT
23131067 ATAATTTTTTTT
1 ATAA---TTTTT
* *
23131079 ACAAATTTT
1 ATAATTTTT
*
23131088 ATATTTCTTT
1 ATAATT-TTT
* *
23131098 ACATTTTTT
1 ATAATTTTT
23131107 ATAATTTTCT
1 ATAATTTT-T
**
23131117 -TACAACTTT
1 ATA-ATTTTT
*
23131126 ATAAAATTTT
1 AT-AATTTTT
23131136 ATAATTTTTT
1 ATAA-TTTTT
*
23131146 CTATATTTTT
1 ATA-ATTTTT
*
23131156 CT-ATATTTT
1 ATAAT-TTTT
*
23131165 ATTATTTTT
1 ATAATTTTT
23131174 -TACGATTTTT
1 ATA--ATTTTT
*
23131184 ATGATTTTT
1 ATAATTTTT
23131193 AATAAGTTTTT
1 -ATAA-TTTTT
23131204 A-ATATTTTT
1 ATA-ATTTTT
23131213 A-ATATTTTT
1 ATA-ATTTTT
* *
23131222 ATTATAATTTA
1 A-TA-ATTTTT
23131233 ATAATTTTT
1 ATAATTTTT
*
23131242 ATTGATTTTT
1 A-TAATTTTT
23131252 AT--TTTTT
1 ATAATTTTT
*
23131259 ATCATTTTT
1 ATAATTTTT
23131268 TACCACATAT
Statistics
Matches: 156, Mismatches: 22, Indels: 46
0.70 0.10 0.21
Matches are distributed among these distances:
7 7 0.04
8 3 0.02
9 67 0.43
10 56 0.36
11 15 0.10
12 8 0.05
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (9 bp):
ATAATTTTT
Found at i:23131098 original size:10 final size:9
Alignment explanation
Indices: 23131084--23131269 Score: 51
Period size: 10 Copynumber: 19.6 Consensus size: 9
23131074 TTTTTACAAA
23131084 TTTTATATT
1 TTTTATATT
*
23131093 TCTTTACATT
1 T-TTTATATT
23131103 TTTTATAATT
1 TTTTAT-ATT
* *
23131113 TTCTTACAACT
1 TT-TTA-TATT
* * *
23131124 TTATAAAAT
1 TTTTATATT
23131133 -TTTATAATTT
1 TTTTAT-AT-T
23131143 TTTCTATATT
1 TTT-TATATT
23131153 TTTCTATATT
1 TTT-TATATT
*
23131163 TTAT-TATT
1 TTTTATATT
*
23131171 TTTTACGA-T
1 TTTTA-TATT
23131180 TTTTATGATT
1 TTTTAT-ATT
*
23131190 TTTAATAAGTT
1 TTTTAT-A-TT
*
23131201 TTTAATATT
1 TTTTATATT
*
23131210 TTTAATA-T
1 TTTTATATT
*
23131218 TTTTATTATAA
1 TTTTA-TAT-T
* *
23131229 TTTAATAAT
1 TTTTATATT
*
23131238 TTTTAT-TGA
1 TTTTATAT-T
23131247 TTTT-TATT
1 TTTTATATT
23131255 TTTTATCATT
1 TTTTAT-ATT
23131265 TTTTA
1 TTTTA
23131270 CCACATATCA
Statistics
Matches: 133, Mismatches: 24, Indels: 39
0.68 0.12 0.20
Matches are distributed among these distances:
8 20 0.15
9 39 0.29
10 48 0.36
11 23 0.17
12 3 0.02
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATATT
Found at i:23131117 original size:21 final size:21
Alignment explanation
Indices: 23131060--23131135 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
23131050 TTGGTAAGAT
*
23131060 AATTTTTATAATTTTTTTTAC
1 AATTTTTATAATTTTCTTTAC
*
23131081 AAATTTTAT-A-TTTCTTTAC
1 AATTTTTATAATTTTCTTTAC
*
23131100 ATTTTTTATAATTTTC-TTAC
1 AATTTTTATAATTTTCTTTAC
* *
23131120 AACTTTATAAAATTTT
1 AA-TTTTTATAATTTT
23131136 ATAATTTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 15 0.33
20 7 0.16
21 23 0.51
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (21 bp):
AATTTTTATAATTTTCTTTAC
Found at i:23131202 original size:20 final size:19
Alignment explanation
Indices: 23131178--23131252 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 19
23131168 ATTTTTTACG
23131178 ATTTTTATGATTTTTAATA
1 ATTTTTATGATTTTTAATA
23131197 AGTTTTTAAT-ATTTTTAAT-
1 A-TTTTT-ATGATTTTTAATA
* *
23131216 ATTTTTATTATAATTTAATA
1 ATTTTTATGAT-TTTTAATA
23131236 ATTTTTATTGATTTTTA
1 ATTTTTA-TGATTTTTA
23131253 TTTTTTATCA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
17 2 0.04
18 7 0.15
19 8 0.17
20 25 0.53
21 5 0.11
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
ATTTTTATGATTTTTAATA
Found at i:23131220 original size:8 final size:9
Alignment explanation
Indices: 23131178--23131252 Score: 62
Period size: 9 Copynumber: 7.8 Consensus size: 9
23131168 ATTTTTTACG
23131178 ATTTTT-AT
1 ATTTTTAAT
23131186 GATTTTTAAT
1 -ATTTTTAAT
23131196 AAGTTTTTAAT
1 -A-TTTTTAAT
23131207 ATTTTTAAT
1 ATTTTTAAT
*
23131216 ATTTTTATT
1 ATTTTTAAT
*
23131225 ATAATTTAAT
1 AT-TTTTAAT
*
23131235 AATTTTTATT
1 -ATTTTTAAT
23131245 GATTTTTA
1 -ATTTTTA
23131253 TTTTTTATCA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
9 24 0.44
10 21 0.38
11 10 0.18
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:23131836 original size:23 final size:23
Alignment explanation
Indices: 23131810--23131864 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
23131800 TAATGATTTT
23131810 TAATTTTTTAAAAATAATTCCTA
1 TAATTTTTTAAAAATAATTCCTA
23131833 TAATTTTTTAAAAATAATTCCTA
1 TAATTTTTTAAAAATAATTCCTA
23131856 TAATTTTTT
1 TAATTTTTT
23131865 TTTTAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (23 bp):
TAATTTTTTAAAAATAATTCCTA
Found at i:23133369 original size:24 final size:25
Alignment explanation
Indices: 23133327--23133374 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
23133317 TTTATGGTAC
*
23133327 ATAAAATATATAAACTTAAATTATA
1 ATAAAATATATAAAATTAAATTATA
*
23133352 ATAAAATAT-TAAAATTAATTTAT
1 ATAAAATATATAAAATTAAATTAT
23133375 TAAGTCATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAAAATATATAAAATTAAATTATA
Found at i:23137353 original size:20 final size:20
Alignment explanation
Indices: 23137328--23137390 Score: 101
Period size: 20 Copynumber: 3.1 Consensus size: 20
23137318 GAAAAAGCTG
*
23137328 TGTTTATACGGATGAGTTAC
1 TGTTTATATGGATGAGTTAC
23137348 TGTTTATATGGATGAAG-TAC
1 TGTTTATATGGATG-AGTTAC
23137368 TGTTTATATGGATGAGTTAC
1 TGTTTATATGGATGAGTTAC
23137388 TGT
1 TGT
23137391 CATCGAATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 2 0.05
20 36 0.90
21 2 0.05
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.43
Consensus pattern (20 bp):
TGTTTATATGGATGAGTTAC
Found at i:23139520 original size:28 final size:28
Alignment explanation
Indices: 23139455--23139553 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
23139445 CATGAGATTG
* * *
23139455 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
23139484 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
23139512 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
23139540 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23139554 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:23145448 original size:15 final size:15
Alignment explanation
Indices: 23145428--23145458 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
23145418 GGGCAAACTA
23145428 AGTCCGAGGTTCATC
1 AGTCCGAGGTTCATC
23145443 AGTCCGAGGTTCATC
1 AGTCCGAGGTTCATC
23145458 A
1 A
23145459 CAACGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (15 bp):
AGTCCGAGGTTCATC
Found at i:23147450 original size:28 final size:28
Alignment explanation
Indices: 23147385--23147483 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
23147375 CATGAGATTG
* * *
23147385 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
23147414 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
23147442 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
23147470 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23147484 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:23151489 original size:14 final size:15
Alignment explanation
Indices: 23151460--23151489 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23151450 CAAAATTAAG
23151460 ACATGATACTTTCAC
1 ACATGATACTTTCAC
23151475 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
23151489 A
1 A
23151490 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:23154859 original size:39 final size:39
Alignment explanation
Indices: 23154797--23155044 Score: 208
Period size: 39 Copynumber: 6.3 Consensus size: 39
23154787 AAATCACGTA
* * * **
23154797 CCTTCGGAATTTAACCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAACCGGTTATAG-TAACTCGCACAAATG
* *
23154836 CCTTCGGGACATAGCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCGGTTATAGTAACTCGCACAAATG
23154875 CCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAA-CCGG-TTATAGTAACTCGCACAAATG
23154915 CCTTC-GGACTTAACCGCG-T-TAGTACACTCGCACAAATG
1 CCTTCGGGACTTAACCG-GTTATAGTA-ACTCGCACAAATG
* * *
23154953 CCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCACAAATG
1 CCTTCGGGACTTA-ACCGGTTA-TAGTAACTCGCACAAATG
* * * * *
23154992 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTA-ACCGGTTATAGTAAC-TCGCACAAATG
23155032 CCTTCGGGACTTA
1 CCTTCGGGACTTA
23155045 GCCCGGACAT
Statistics
Matches: 177, Mismatches: 18, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
37 6 0.03
38 29 0.16
39 73 0.41
40 55 0.31
41 14 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCGGTTATAGTAACTCGCACAAATG
Found at i:23154912 original size:40 final size:40
Alignment explanation
Indices: 23154830--23155051 Score: 228
Period size: 40 Copynumber: 5.7 Consensus size: 40
23154820 GCTACTCGTT
* *
23154830 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
23154869 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
23154909 CAAATGCCTTC-GGACTTAA-CCGCG--TTAGTACACTCGCA
1 CAAATGCCTTCGGGACTTAACCCG-GATTTAGTA-ACTCGCA
* * *
23154947 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
23154986 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
23155027 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23155052 CATCATTCAA
Statistics
Matches: 159, Mismatches: 12, Indels: 23
0.82 0.06 0.12
Matches are distributed among these distances:
37 6 0.04
38 28 0.18
39 48 0.30
40 64 0.40
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23155035 original size:117 final size:118
Alignment explanation
Indices: 23154830--23155044 Score: 278
Period size: 117 Copynumber: 1.8 Consensus size: 118
23154820 GCTACTCGTT
*
23154830 CAAATGCCTTCGGGACATAGCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
23154895 TTTAGTAACTCGCACAAATGCCTTC-GGACTTAACCGCGTTAGTACACTCGCA
66 TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCGCGTTAGTACACTCGCA
* * **
23154947 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAG-CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
23155009 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
63 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTA
23155045 GCCCGGACAT
Statistics
Matches: 84, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
116 8 0.10
117 61 0.73
118 15 0.18
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCGCGTTAGTACACTCGCA
Found at i:23162883 original size:79 final size:79
Alignment explanation
Indices: 23162780--23163000 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 79
23162770 GCTACTCGTT
* *
23162780 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
23162845 TTTAGTAACTCGCA
66 ATTAGTAACTCGCA
*
23162859 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAC-AATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-
*
23162921 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
* * * * *
23162937 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
23163000 G
64 G
23163001 GACATCATTC
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
77 11 0.09
78 50 0.40
79 51 0.41
80 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
ATTAGTAACTCGCA
Found at i:23163002 original size:40 final size:40
Alignment explanation
Indices: 23162761--23163002 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
23162751 CGGAATTTAA
** *
23162761 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23162801 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23162841 CC-GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
23162880 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23162918 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23162958 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23162998 CCGGA
1 CCGGA
23163003 CATCATTCAA
Statistics
Matches: 177, Mismatches: 16, Indels: 18
0.84 0.08 0.09
Matches are distributed among these distances:
38 24 0.14
39 59 0.33
40 82 0.46
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23170162 original size:28 final size:27
Alignment explanation
Indices: 23170105--23170186 Score: 85
Period size: 28 Copynumber: 2.9 Consensus size: 27
23170095 ATACAGTCTA
*
23170105 GGCCTAAGCCCATATCAGTAACAGA-CTG
1 GGCCTAAGCCCATA-CAGTAACA-ATATG
23170133 GGCCTAAGCCCATTACAGTAACAATATG
1 GGCCTAAGCCCA-TACAGTAACAATATG
* * *
23170161 GGCATTAGCCCAATGCAGTAACAATA
1 GGCCTAAGCCC-ATACAGTAACAATA
23170187 CAGTACAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.02
28 43 0.91
29 3 0.06
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (27 bp):
GGCCTAAGCCCATACAGTAACAATATG
Found at i:23170547 original size:26 final size:28
Alignment explanation
Indices: 23170510--23170563 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
23170500 ATCATAGCAC
*
23170510 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
23170537 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
23170564 TTTTGGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:23173269 original size:27 final size:27
Alignment explanation
Indices: 23173163--23173269 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
23173153 AGGAAGCGTC
*
23173163 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
23173190 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
*
23173217 CTGGTGGCTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
23173245 CTGGTGACTCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
23173270 TCTAGCAGCC
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.03
27 51 0.74
28 16 0.23
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:23173269 original size:54 final size:54
Alignment explanation
Indices: 23173163--23173272 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
23173153 AGGAAGCGTC
* *
23173163 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
23173217 CTGGTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
23173271 CT
1 CT
23173273 AGCAGCCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:23180968 original size:39 final size:39
Alignment explanation
Indices: 23180914--23181027 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
23180904 CAGTGATGTT
*
23180914 TATCCAGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
23180953 TATCCAGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
23180992 TATCCGGACTCAAGGTCCACAGGCTACGTGCTGGAA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAA
23181028 ATATGTCCGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:23182420 original size:16 final size:16
Alignment explanation
Indices: 23182395--23182428 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23182385 AAGGGGCAAC
*
23182395 AATGTAATTTTTGTAT
1 AATGTAATTTTTGGAT
*
23182411 AATGTGATTTTTGGAT
1 AATGTAATTTTTGGAT
23182427 AA
1 AA
23182429 AAATTAATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (16 bp):
AATGTAATTTTTGGAT
Found at i:23203975 original size:21 final size:21
Alignment explanation
Indices: 23203951--23204004 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
23203941 AAAACAGGGC
*
23203951 ACACATCCGTGTGGAAGGGTA
1 ACACACCCGTGTGGAAGGGTA
* *
23203972 ACACGCCCGTGTTGAAGGGTA
1 ACACACCCGTGTGGAAGGGTA
**
23203993 ACATGCCCGTGT
1 ACACACCCGTGT
23204005 CCCACACCCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.20
Consensus pattern (21 bp):
ACACACCCGTGTGGAAGGGTA
Found at i:23205047 original size:24 final size:24
Alignment explanation
Indices: 23205002--23205048 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
23204992 AGTATGGTAT
*
23205002 TGGAAATATATACATGGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
23205026 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
23205049 GTTAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:23205771 original size:3 final size:3
Alignment explanation
Indices: 23205757--23205816 Score: 84
Period size: 3 Copynumber: 19.7 Consensus size: 3
23205747 AAACATAAGC
* *
23205757 TAA TACA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA TAG
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
23205803 TAA TAA TAC TAA TA
1 TAA TAA TAA TAA TA
23205817 TTATAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:23209344 original size:47 final size:47
Alignment explanation
Indices: 23209195--23209710 Score: 806
Period size: 47 Copynumber: 11.1 Consensus size: 47
23209185 CCTTCGGGAA
* * * * * * *
23209195 TTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
23209242 CTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
23209288 TTATCACATATATACACTTTCACATTCATCACAGCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
23209335 TTCTCACATATATACACTTTCACATTCATCACATCGGCTA-TAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
23209381 TTATCAC-TATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
23209427 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
23209474 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGG-C
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
23209520 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
23209567 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
23209614 TTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
23209661 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
23209708 TTA
1 TTA
23209711 CTATCATTTC
Statistics
Matches: 440, Mismatches: 25, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
45 32 0.07
46 111 0.25
47 297 0.68
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:23209354 original size:93 final size:94
Alignment explanation
Indices: 23209195--23209710 Score: 815
Period size: 93 Copynumber: 5.5 Consensus size: 94
23209185 CCTTCGGGAA
* * * * * * * * *
23209195 TTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
23209260 TTCACATTCA-CACATCGGCCATTAGGCC
66 TTCACATTCATCACATCGGCTATTAGGCC
* *
23209288 TTATCACATATATACACTTTCACATTCATCACAGCGGCCATTAGGCCTTCTCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
23209353 TTCACATTCATCACATCGGCTA-TAGGCC
66 TTCACATTCATCACATCGGCTATTAGGCC
*
23209381 TTATCAC-TATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
23209445 TTCACATTCATCACATCGGCTATTAGGCC
66 TTCACATTCATCACATCGGCTATTAGGCC
* * *
23209474 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGG-CTTATCACACATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* *
23209538 TTCACATTCATCACATCGGCCATTTGGCC
66 TTCACATTCATCACATCGGCTATTAGGCC
* *
23209567 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
23209632 TTCACATTCATCACGTCGGCTATTAGGCC
66 TTCACATTCATCACATCGGCTATTAGGCC
23209661 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
23209711 CTATCATTTC
Statistics
Matches: 394, Mismatches: 25, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
92 76 0.19
93 180 0.46
94 138 0.35
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCTATTAGGCC
Found at i:23209598 original size:140 final size:141
Alignment explanation
Indices: 23209195--23209710 Score: 806
Period size: 140 Copynumber: 3.7 Consensus size: 141
23209185 CCTTCGGGAA
** * * * * * * * *
23209195 TTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
23209260 TTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAGCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
23209324 GCCATTAGGCC
131 GCCATTAGGCC
* * *
23209335 TTCTCACATATATACACTTTCACATTCATCACATCGGCTA-TAGGCCTTATCAC-TATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
23209398 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
23209463 GCTATTAGGCC
131 GCCATTAGGCC
* *
23209474 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGG-CTTATCACACATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* *
23209538 TTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
23209603 GCCATTAGGCC
131 GCCATTAGGCC
* *
23209614 TTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACATATATACACT
1 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
23209679 TTCACATTCATCACATCGGCCATTAGGCCTTA
66 TTCACATTCATCACATCGGCCATTAGGCCTTA
23209711 CTATCATTTC
Statistics
Matches: 345, Mismatches: 27, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
138 20 0.06
139 117 0.34
140 159 0.46
141 49 0.14
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCC
Found at i:23213609 original size:28 final size:29
Alignment explanation
Indices: 23213543--23213620 Score: 113
Period size: 28 Copynumber: 2.7 Consensus size: 29
23213533 CTTAATAATC
*
23213543 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
23213573 AACTCGCACACTTAGTGCCATGCA-TTTA
1 AACCCGCACACTTAGTGCCATGCACTTTA
*
23213601 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
23213621 ATCTCACCCG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 22 0.50
29 19 0.43
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:23213704 original size:43 final size:43
Alignment explanation
Indices: 23213602--23213732 Score: 220
Period size: 43 Copynumber: 3.2 Consensus size: 43
23213592 ATGCATTTAA
23213602 GCCCGCACACTTAGTGCCAATCTCAC--CCG-GAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
23213642 G-CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
23213684 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTA-T
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
23213726 -CCCGCAC
1 GCCCGCAC
23213733 TTGTGCTGAA
Statistics
Matches: 87, Mismatches: 0, Indels: 7
0.93 0.00 0.07
Matches are distributed among these distances:
39 24 0.28
40 1 0.01
41 10 0.11
42 13 0.15
43 39 0.45
ACGTcount: A:0.27, C:0.37, G:0.15, T:0.21
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:23213978 original size:18 final size:18
Alignment explanation
Indices: 23213955--23213998 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
23213945 ACTAACCCTT
23213955 ATAATTCAATCCAAATCG
1 ATAATTCAATCCAAATCG
23213973 ATAATTCAATCCAAATCG
1 ATAATTCAATCCAAATCG
23213991 A-AATTCAA
1 ATAATTCAA
23213999 ATACGAGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (18 bp):
ATAATTCAATCCAAATCG
Found at i:23233405 original size:46 final size:46
Alignment explanation
Indices: 23233355--23233530 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
23233345 TGGTTGAGCA
23233355 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23233401 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23233446 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23233494 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23233531 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23233511 original size:93 final size:93
Alignment explanation
Indices: 23233352--23233523 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23233342 GGATGGTTGA
* *
23233352 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23233417 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23233445 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23233510 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
23233524 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23240959 original size:46 final size:46
Alignment explanation
Indices: 23240909--23241084 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
23240899 TGGTTGAGCA
23240909 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23240955 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23241000 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23241048 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23241085 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23241065 original size:93 final size:93
Alignment explanation
Indices: 23240906--23241077 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23240896 GGATGGTTGA
* *
23240906 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23240971 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23240999 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23241064 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
23241078 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23243500 original size:42 final size:43
Alignment explanation
Indices: 23243422--23243503 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
23243412 CGTGTCTTAG
* * *
23243422 TTGTGTGGAGAGCACGGTCTCTGGCCATGGGCGTGTGCCTCAA
1 TTGTGTGGAGAGAACGGCCTCTGGCCACGGGCGTGTGCCTCAA
* *
23243465 TTGTGTGGAGA-AATGGCCTCTGGCCACGGGTGTGTGCCT
1 TTGTGTGGAGAGAACGGCCTCTGGCCACGGGCGTGTGCCT
23243504 TAACTTGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 23 0.68
43 11 0.32
ACGTcount: A:0.13, C:0.22, G:0.38, T:0.27
Consensus pattern (43 bp):
TTGTGTGGAGAGAACGGCCTCTGGCCACGGGCGTGTGCCTCAA
Found at i:23246175 original size:13 final size:13
Alignment explanation
Indices: 23246153--23246189 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
23246143 GTAATCATAC
23246153 ACGGGCGTGTCAT
1 ACGGGCGTGTCAT
*
23246166 ACGGGAGTGTCAT
1 ACGGGCGTGTCAT
23246179 ACGGGCGTGTC
1 ACGGGCGTGTC
23246190 CTTACCGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.16, C:0.22, G:0.41, T:0.22
Consensus pattern (13 bp):
ACGGGCGTGTCAT
Found at i:23248685 original size:19 final size:19
Alignment explanation
Indices: 23248658--23248694 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
23248648 GTCAGCATAG
23248658 ATTCATAGGCATAACTTAA
1 ATTCATAGGCATAACTTAA
*
23248677 ATTCGTAGGCATAACTTA
1 ATTCATAGGCATAACTTA
23248695 CACATTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (19 bp):
ATTCATAGGCATAACTTAA
Found at i:23253307 original size:34 final size:34
Alignment explanation
Indices: 23253264--23253332 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
23253254 TGTACATCCA
*
23253264 ATAACACCATTTATGGTCTAATTACCATATAAGG
1 ATAACACCATTTATGGTCTAATTACCACATAAGG
*
23253298 ATAACACCATTTATTGTCTAATTACCACATAAGG
1 ATAACACCATTTATGGTCTAATTACCACATAAGG
23253332 A
1 A
23253333 CTCATACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (34 bp):
ATAACACCATTTATGGTCTAATTACCACATAAGG
Found at i:23254230 original size:16 final size:16
Alignment explanation
Indices: 23254209--23254245 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23254199 TACTGGGCCG
23254209 GTGTCGTGACACCCTA
1 GTGTCGTGACACCCTA
23254225 GTGTCGTGACACCCTA
1 GTGTCGTGACACCCTA
*
23254241 ATGTC
1 GTGTC
23254246 TATGTCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.27
Consensus pattern (16 bp):
GTGTCGTGACACCCTA
Found at i:23255835 original size:57 final size:58
Alignment explanation
Indices: 23255728--23255845 Score: 175
Period size: 57 Copynumber: 2.1 Consensus size: 58
23255718 GGTATATTTG
* * * * *
23255728 ATTACTCAATACCTATTTAATGTATAATATATAGACCTTAATAGTCTAAAAATTGAAA
1 ATTACTCAATACCTATTTAAAGCATAATATATAGAACTCAATAGTCTAAAAATTAAAA
*
23255786 ATTACTCAATACCTATTTAAAGCA-AATATATAGAACTCAGTAGTCTAAAAATTAAAA
1 ATTACTCAATACCTATTTAAAGCATAATATATAGAACTCAATAGTCTAAAAATTAAAA
23255843 ATT
1 ATT
23255846 GAAAATCAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
57 32 0.59
58 22 0.41
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.34
Consensus pattern (58 bp):
ATTACTCAATACCTATTTAAAGCATAATATATAGAACTCAATAGTCTAAAAATTAAAA
Found at i:23263322 original size:37 final size:37
Alignment explanation
Indices: 23263263--23263364 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
23263253 AGCTCAGACG
* *
23263263 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
23263300 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
23263337 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
23263365 TAGAGCTTGG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:23263561 original size:47 final size:47
Alignment explanation
Indices: 23263483--23264173 Score: 1148
Period size: 47 Copynumber: 14.6 Consensus size: 47
23263473 CCCTTCGGGA
* * * * * * *
23263483 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23263530 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23263577 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23263624 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23263671 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23263718 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23263765 CTTATCAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23263812 CTTATCACATATATATACACTTTCACATTCATCACGTCAGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23263861 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23263908 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23263955 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23264002 CTTATCACATATATATACACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23264051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23264098 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23264147 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
23264174 TATTCAAATA
Statistics
Matches: 605, Mismatches: 33, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 471 0.78
49 134 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23263929 original size:190 final size:190
Alignment explanation
Indices: 23263483--23264173 Score: 1179
Period size: 190 Copynumber: 3.6 Consensus size: 190
23263473 CCCTTCGGGA
* * * * * * * * *
23263483 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23263548 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
23263613 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGAC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
23263671 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
23263736 TTTCACATTCATCACATCGGCTATTAGGCCTTATCAAATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
23263801 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCAGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
23263861 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
23263926 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* * * *
23263991 GGCCATTAGGTCTTATCACATATATATACACTTTCACATTCATCACATGGGCCATTCGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
23264051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
23264116 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
23264174 TATTCAAATA
Statistics
Matches: 475, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
188 138 0.29
190 272 0.57
192 65 0.14
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:23266793 original size:21 final size:23
Alignment explanation
Indices: 23266758--23266802 Score: 76
Period size: 21 Copynumber: 2.0 Consensus size: 23
23266748 ATTAAAGATT
23266758 CCCTTTAGTGGTATTGTGATATC
1 CCCTTTAGTGGTATTGTGATATC
23266781 CCCTTT-G-GGTATTGTGATATC
1 CCCTTTAGTGGTATTGTGATATC
23266802 C
1 C
23266803 ACCTGCCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 15 0.68
22 1 0.05
23 6 0.27
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (23 bp):
CCCTTTAGTGGTATTGTGATATC
Found at i:23269581 original size:23 final size:23
Alignment explanation
Indices: 23269552--23269677 Score: 118
Period size: 23 Copynumber: 5.5 Consensus size: 23
23269542 ACAGCTCGTT
* *
23269552 GAGCTTACCGTTTCAGTT-TTTAT
1 GAGCTTACCGTTTCA-TTCCTTAG
* * *
23269575 GAGCTTACC-ATTCAGAT-CTTCG
1 GAGCTTACCGTTTCA-TTCCTTAG
23269597 GAGCTTACCGTTTCATTCCTTAG
1 GAGCTTACCGTTTCATTCCTTAG
*
23269620 GGGCTTACCGTTTCATTCCTTAG
1 GAGCTTACCGTTTCATTCCTTAG
*
23269643 GGGCTTACCGTTTCA-T-CTCTACG
1 GAGCTTACCGTTTCATTCCT-TA-G
23269666 GAGCTTACCGTT
1 GAGCTTACCGTT
23269678 CAGCTCACAC
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
21 2 0.02
22 21 0.24
23 66 0.74
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (23 bp):
GAGCTTACCGTTTCATTCCTTAG
Found at i:23272693 original size:14 final size:14
Alignment explanation
Indices: 23272676--23272705 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
23272666 GGATAATTAA
23272676 ATTAGTGAAATTTT
1 ATTAGTGAAATTTT
23272690 ATTAGTGAAATTTT
1 ATTAGTGAAATTTT
23272704 AT
1 AT
23272706 CATTTTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (14 bp):
ATTAGTGAAATTTT
Found at i:23273057 original size:48 final size:48
Alignment explanation
Indices: 23272981--23273250 Score: 285
Period size: 48 Copynumber: 5.6 Consensus size: 48
23272971 TATGTGTGCC
*
23272981 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* * * *
23273029 AGTGCAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
* * ** * *
23273077 AGTGTAAGACCATGTTTGAGACATGGCATCGGCCACTTTATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* ** * * *
23273125 AGTGTAAGACCATGTCTAGGACATGGCAT-GG-CATTAAGACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
* * * * *
23273172 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* *
23273220 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
23273251 ACAATTCACC
Statistics
Matches: 181, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
46 2 0.01
47 37 0.20
48 139 0.77
49 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
Found at i:23273134 original size:96 final size:96
Alignment explanation
Indices: 23272968--23273250 Score: 352
Period size: 96 Copynumber: 3.0 Consensus size: 96
23272958 GACATTTCGG
* * * * *
23272968 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCTAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTG
*
23273033 CAAGACCATGTCTGGGACATGGCATCGGCAT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * * ** *
23273064 TGATATGTGCGCTAGTGTAAGACCATGTTTGAGACATGGCATCGGCCACTTTATAAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTG
*
23273129 TAAGACCATGTCTAGGACATGGCAT-GGCAT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * * ** * * *
23273159 TAAGACGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTG
* *
23273224 TAAGACCATGTTTGGAACATGGCATCG
66 TAAGACCATGTCTGGGACATGGCATCG
23273251 ACAATTCACC
Statistics
Matches: 158, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
95 78 0.49
96 80 0.51
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (96 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:23273219 original size:95 final size:96
Alignment explanation
Indices: 23272981--23273250 Score: 337
Period size: 95 Copynumber: 2.8 Consensus size: 96
23272971 TATGTGTGCC
* * * *
23272981 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCTAGTGCAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
* * * * ***
23273046 GGGACATGGCATCGGCATTGATATGTGCGCT
66 AGGACATGGCATCGGCATTAAGACGAAAGCT
* * ** *
23273077 AGTGTAAGACCATGTTTGAGACATGGCATCGGCCACTTTATAAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
23273142 AGGACATGGCAT-GGCATTAAGACGAAAGCT
66 AGGACATGGCATCGGCATTAAGACGAAAGCT
* * *
23273172 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGTGTAAGACCATGT-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
*
23273236 TGGAACATGGCATCG
66 AGG-ACATGGCATCG
23273251 ACAATTCACC
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
94 3 0.02
95 76 0.51
96 69 0.47
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGGCATTAAGACGAAAGCT
Found at i:23273237 original size:143 final size:144
Alignment explanation
Indices: 23272978--23273250 Score: 392
Period size: 143 Copynumber: 1.9 Consensus size: 144
23272968 TGATATGTGT
* *
23272978 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCTAGTGCAAGACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATAGGAAAGCTAGTGCAAGACCATG
** * * *
23273043 TCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTTT-GAGACATGGCATC
66 TCTGGGACATGGCATCGGCATCAACATGTGAGCCAGTGTAAGACCATGTTTGGA-ACATGGCATC
23273107 GGCCACTTTATAAGA
130 GGCCACTTTATAAGA
** *
23273122 GCCAGTGTAAGACCATGTCTAGGACATGGCAT-GG-CATTA-AGACGAAAGCTAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATAG--GAAAGCTAGTGCAAGACCA
*
23273184 TGTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
64 TGTCTGGGACATGGCATCGGCATCAACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
23273249 CG
129 CG
23273251 ACAATTCACC
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
141 2 0.02
142 3 0.03
143 77 0.67
144 33 0.29
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATAGGAAAGCTAGTGCAAGACCATG
TCTGGGACATGGCATCGGCATCAACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
GCCACTTTATAAGA
Found at i:23276673 original size:46 final size:46
Alignment explanation
Indices: 23276606--23276857 Score: 218
Period size: 46 Copynumber: 5.5 Consensus size: 46
23276596 TGTGTGCCAC
*
23276606 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAG
*
23276652 TGTAAGACCATGTCT-AGACATGGCATC-G--ACATTGA-GACGAGGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGA-GA--GCTAG
* * *
23276699 TGTAAGACATGTCTGGGACATGCATCAGCCATAATATGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAG
* * * ** *
23276745 TGTAAGACATGTCTGGGACATACATCGGCCTCGA-GATGTTAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCTAG
* * * *
23276791 TGTCAA-ACATGTCTGGGACATGCGTCGGCTAC--GA-GATGTGCTAG
1 TGT-AAGACATGTCTGGGACATGCATCGGCCACATTATGA-GAGCTAG
23276835 TGTAAGACATGTCTGGGACATGC
1 TGTAAGACATGTCTGGGACATGC
23276858 GTTAGCACGG
Statistics
Matches: 170, Mismatches: 21, Indels: 32
0.76 0.09 0.14
Matches are distributed among these distances:
43 3 0.02
44 33 0.19
45 2 0.01
46 91 0.54
47 33 0.19
48 3 0.02
49 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAG
Found at i:23276765 original size:93 final size:92
Alignment explanation
Indices: 23276601--23276856 Score: 261
Period size: 93 Copynumber: 2.8 Consensus size: 92
23276591 AGATTTGTGT
* * * *
23276601 GCCACTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCTAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCATAATATGAGAGCTAGTGTAAGA-CATGTC
* * * *
23276666 T-AGACATGGCATCGACATTGAGACGAGG
64 TGGGACATGACATCGACATCGAGACGAGA
*
23276694 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAATATGAGAGCTAGTGTAAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCATAATATGAGAGCTAGTGTAAGACATGTCT
* * * **
23276759 GGGACAT-ACATCGGCCTCGAGATGTTA
65 GGGACATGACATCGACATCGAGACGAGA
* * ** *
23276786 GCCAGTGTCAA-ACATGTCTGGGACATGCGTCGGC-TACGA-GATGTGCTAGTGTAAGACATGTC
1 GCCAGTGT-AAGACATGTCTGGGACATGCATCGCCATAATATGA-GAGCTAGTGTAAGACATGTC
23276848 TGGGACATG
64 TGGGACATG
23276857 CGTTAGCACG
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
89 2 0.01
90 30 0.22
91 2 0.01
92 45 0.33
93 59 0.43
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (92 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGCCATAATATGAGAGCTAGTGTAAGACATGTCTG
GGACATGACATCGACATCGAGACGAGA
Found at i:23284030 original size:28 final size:28
Alignment explanation
Indices: 23283998--23284112 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
23283988 TACTTGTATC
* *
23283998 TGGCCCATTAAGCCCAATTATATTCATA
1 TGGCCCATTAGGCCCAATTACATTCATA
* **
23284026 TGGCCCATTAGGCCCAAAT-CACCCGTATA
1 TGGCCCATTAGGCCCAATTACATTC--ATA
*
23284055 TGGCCCATTAGGCCCAAATTACATTTATA
1 TGGCCCATTAGGCCC-AATTACATTCATA
* *
23284084 TGGCCCGTTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATTACATTCATA
23284112 T
1 T
23284113 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 2 0.03
28 29 0.41
29 35 0.49
30 3 0.04
31 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATTACATTCATA
Found at i:23284059 original size:57 final size:57
Alignment explanation
Indices: 23283993--23284104 Score: 163
Period size: 58 Copynumber: 2.0 Consensus size: 57
23283983 TCACATACTT
* *
23283993 GTATCTGGCCCATTAAGCCC-AATTATATTCATATGGCCCATTAGGCCCAAATCACCC
1 GTATATGGCCCATTAAGCCCAAATTACATTCATATGGCCCATTAGGCCC-AATCACCC
* * *
23284050 GTATATGGCCCATTAGGCCCAAATTACATTTATATGGCCCGTTAGGCCCAATCAC
1 GTATATGGCCCATTAAGCCCAAATTACATTCATATGGCCCATTAGGCCCAATCAC
23284105 ATTCATATTC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
57 24 0.49
58 25 0.51
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (57 bp):
GTATATGGCCCATTAAGCCCAAATTACATTCATATGGCCCATTAGGCCCAATCACCC
Found at i:23287339 original size:13 final size:13
Alignment explanation
Indices: 23287317--23287349 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23287307 AAGGATTTGT
23287317 TTAT-TAAACTAA
1 TTATCTAAACTAA
23287329 TTATCTAAACTAA
1 TTATCTAAACTAA
*
23287342 TTAACTAA
1 TTATCTAA
23287350 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:23291923 original size:40 final size:40
Alignment explanation
Indices: 23291861--23292065 Score: 292
Period size: 40 Copynumber: 5.2 Consensus size: 40
23291851 AAACCAAGTA
* *
23291861 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCG-ATCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCA-CAAATG
*
23291900 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23291940 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23291980 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23292020 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
23292060 CCTTCG
1 CCTTCG
23292066 TTATCATCCG
Statistics
Matches: 152, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 14 0.09
40 137 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23300295 original size:39 final size:39
Alignment explanation
Indices: 23300174--23300337 Score: 242
Period size: 40 Copynumber: 4.2 Consensus size: 39
23300164 AAACCAAGTA
* * *
23300174 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
23300213 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
23300253 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
*
23300292 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
23300332 CCTTCG
1 CCTTCG
23300338 TTATCATCCG
Statistics
Matches: 117, Mismatches: 4, Indels: 7
0.91 0.03 0.05
Matches are distributed among these distances:
38 1 0.01
39 50 0.43
40 66 0.56
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:23300305 original size:79 final size:79
Alignment explanation
Indices: 23300174--23300337 Score: 244
Period size: 79 Copynumber: 2.1 Consensus size: 79
23300164 AAACCAAGTA
* *
23300174 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAG
1 CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
23300238 T-AGCTCGCACAAATG
65 TCA-CTAGCACAAATG
*
23300253 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTA-ACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
23300317 TCACTAGCACAAATG
65 TCACTAGCACAAATG
23300332 CCTTCG
1 CCTTCG
23300338 TTATCATCCG
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
79 65 0.83
80 13 0.17
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATG
Found at i:23304273 original size:48 final size:47
Alignment explanation
Indices: 23304199--23304423 Score: 247
Period size: 48 Copynumber: 4.7 Consensus size: 47
23304189 TGATATGTGT
*
23304199 GCCAGTGTAAGTCCATGTCTGGGACATGGCATCAGCCACGATAGGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATAGGAGA
* * * *
23304247 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA-TAGGAGA
* * *
23304295 GCCAGTGTAAGACCATCTCTGGGACATGGCATC-GGCA-TTAAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACAT-AG--GAGA
* * * * *
23304343 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATAGGAGA
* *
23304391 GCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
23304424 GGCAATTCAC
Statistics
Matches: 148, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
47 4 0.03
48 139 0.94
49 2 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATAGGAGA
Found at i:23304366 original size:96 final size:95
Alignment explanation
Indices: 23304199--23304427 Score: 307
Period size: 96 Copynumber: 2.4 Consensus size: 95
23304189 TGATATGTGT
* *
23304199 GCCAGTGTAAGTCCATGTCTGGGACATGGCATCAGCCACGATAGGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGATAGGAGAGCTAGTGTAAGACCATG
* * **
23304264 TTTGGGACATGGCATCGGCCACATTATGAGA
65 TCTGGGACATGGCATCAGCCACAACATGAGA
* **
23304295 GCCAGTGTAAGACCATCTCTGGGACATGGCATCGGCATTA-AGACGAGAGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAG--GAGAGCTAGTGTAAGACCAT
* *
23304359 GTCTGGGACATGGCATCAGCCTCAACATGTGA
64 GTCTGGGACATGGCATCAGCCACAACATGAGA
* *
23304391 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
23304428 ATTCACCCTC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
94 2 0.02
95 4 0.03
96 111 0.95
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (95 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAGGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCAGCCACAACATGAGA
Found at i:23308049 original size:46 final size:46
Alignment explanation
Indices: 23307996--23308171 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
23307986 TATTTGGGCA
23307996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
23308042 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
23308089 TCCTAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23308135 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23308172 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23308151 original size:93 final size:93
Alignment explanation
Indices: 23307992--23308163 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
23307982 AGGATATTTG
*
23307992 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
23308057 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * * *
23308085 GGCATCCTAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
23308150 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
23308164 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:23312259 original size:20 final size:20
Alignment explanation
Indices: 23312234--23312298 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
23312224 TGGGCCTTGG
23312234 GTTCAGAAACTCGGAATCCA
1 GTTCAGAAACTCGGAATCCA
* *
23312254 GTTCAGAAAATC--ATATCTTGA
1 GTTCAGAAACTCGGA-ATC--CA
23312275 GTTCAGAAACTCGGAATCCA
1 GTTCAGAAACTCGGAATCCA
23312295 GTTC
1 GTTC
23312299 CGTAAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 1 0.03
19 3 0.08
20 16 0.44
21 12 0.33
22 3 0.08
23 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (20 bp):
GTTCAGAAACTCGGAATCCA
Found at i:23313560 original size:40 final size:40
Alignment explanation
Indices: 23313523--23313706 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
23313513 GCTACTCGTT
*
23313523 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
23313563 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
23313603 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
23313642 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
23313683 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
23313707 ACATCATTCA
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.61
41 15 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:23313634 original size:79 final size:79
Alignment explanation
Indices: 23313490--23313707 Score: 239
Period size: 79 Copynumber: 2.7 Consensus size: 79
23313480 AAATCACGTA
* * * * *
23313490 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATAG
23313554 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
23313569 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATA
*
23313632 GTATCTCGCACAAATG
64 GTAACTCGCACAAATG
* * * *
23313648 CCTTC-GGATCTTAGTCTGGATATGGTCACTTCGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
23313708 CATCATTCAA
Statistics
Matches: 119, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 67 0.56
80 49 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:23324855 original size:48 final size:48
Alignment explanation
Indices: 23324742--23325008 Score: 321
Period size: 48 Copynumber: 5.6 Consensus size: 48
23324732 AAATGAGATT
* * *
23324742 CTGTGTAAGACCATGTTTGGGACATGGCATTGGC-ATCCGAGA-AGTGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATA-TGTGC
* **
23324791 CTGTGTAAGACCATGTCTAGGACATGGCATCAACGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
23324839 CTGTGTAAGACCATGTCTGGGACATGGCAT-GGCGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * *
23324886 CTGTATAAGACCATGTTTGGGACATGGCATCGGGGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* *
23324934 CAT-TGTAAGACCATGTCTGGGACATGGCATTGGCGAT--TATATGTGGA
1 C-TGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-GC
* *
23324981 TTCATGTAAGACCATGTCTGGGACATGG
1 CT-GTGTAAGACCATGTCTGGGACATGG
23325009 TATTGGTACT
Statistics
Matches: 193, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
46 8 0.04
47 44 0.23
48 108 0.56
49 31 0.16
50 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
Found at i:23324909 original size:95 final size:96
Alignment explanation
Indices: 23324742--23324978 Score: 324
Period size: 95 Copynumber: 2.5 Consensus size: 96
23324732 AAATGAGATT
* * *
23324742 CTGTGTAAGACCATGTTTGGGACATGGCATTGGC-ATCCGAGA-AGTGTGCCTGTGTAAGACCAT
1 CTGTGTAAGACCATGTCTGGGACATGGCATTGGCGAT--GATATA-TGTGCCTGTATAAGACCAT
23324805 GTCTAGGACATGGCATCAACGATGATATATGTGC
63 GTCTAGGACATGGCATCAACGATGATATATGTGC
*
23324839 CTGTGTAAGACCATGTCTGGGACATGGCA-TGGCGATGATATATGTGCCTGTATAAGACCATGTT
1 CTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTGCCTGTATAAGACCATGTC
* ***
23324903 TGGGACATGGCATCGGGGATGATATATGTGC
66 TAGGACATGGCATCAACGATGATATATGTGC
23324934 CAT-TGTAAGACCATGTCTGGGACATGGCATTGGCGAT--TATATGTG
1 C-TGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTG
23324979 GATTCATGTA
Statistics
Matches: 128, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
94 8 0.06
95 77 0.60
96 13 0.10
97 30 0.23
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (96 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATATGTGCCTGTATAAGACCATGTC
TAGGACATGGCATCAACGATGATATATGTGC
Found at i:23324989 original size:143 final size:142
Alignment explanation
Indices: 23324742--23325008 Score: 344
Period size: 143 Copynumber: 1.9 Consensus size: 142
23324732 AAATGAGATT
* *
23324742 CTGTGTAAGACCATGTTTGGGACATGGCATTGGCATCCGAGAAGTGTGCCTGTGTAAGACCATGT
1 CTGTATAAGACCATGTTTGGGACATGGCATGGGCAT-CGAGAAGTGTGCCTGTGTAAGACCATGT
* *
23324807 CTAGGACATGGCATCAACGATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATGGC
65 CTAGGACATGGCATCAACGAT-ATATATGTGACTATGTAAGACCATGTCTGGGACATGGCATGGC
23324872 GATGATATATGTGC
129 GATGATATATGTGC
* *
23324886 CTGTATAAGACCATGTTTGGGACATGGCATCGGGGAT-GATATA-TGTGCCAT-TGTAAGACCAT
1 CTGTATAAGACCATGTTTGGGACATGGCAT-GGGCATCGAGA-AGTGTGCC-TGTGTAAGACCAT
* *** *
23324948 GTCTGGGACATGGCATTGGCGAT-TATATGTGGATTCATGTAAGACCATGTCTGGGACATGG
63 GTCTAGGACATGGCATCAACGATATATATGT-GACT-ATGTAAGACCATGTCTGGGACATGG
23325009 TATTGGTACT
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
141 7 0.07
142 2 0.02
143 63 0.59
144 31 0.29
145 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (142 bp):
CTGTATAAGACCATGTTTGGGACATGGCATGGGCATCGAGAAGTGTGCCTGTGTAAGACCATGTC
TAGGACATGGCATCAACGATATATATGTGACTATGTAAGACCATGTCTGGGACATGGCATGGCGA
TGATATATGTGC
Found at i:23330721 original size:55 final size:53
Alignment explanation
Indices: 23330579--23330722 Score: 164
Period size: 53 Copynumber: 2.7 Consensus size: 53
23330569 TTTTCCTTTT
* * ** * *
23330579 TGAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATTCTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACCTGGGACTCTTGCCTTA
* *
23330632 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACCTGGGAC-CTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACCTGGGACTC-TTGCCTTA
* *
23330685 TAGTAACTCATCAATGCCATGTCTTGACATGATCTTAC
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTAC
23330723 ATGATTTCCT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 44 0.58
54 1 0.01
55 30 0.39
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACCTGGGACTCTTGCCTTA
Found at i:23330776 original size:54 final size:54
Alignment explanation
Indices: 23330591--23330787 Score: 195
Period size: 55 Copynumber: 3.6 Consensus size: 54
23330581 AACTTACCAT
* ** * * *
23330591 TGCCATGTCTT-GACATGGTCTTATGTGGTATTCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGA-ATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * **
23330644 TGCCATGCCTTGGCATGGTCTTACCTGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGAATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
23330699 TGCCATGTCTT-GACATGATCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGA-ATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
*
23330753 TACCATGCCTTGGAATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGGAATGGTCTTACATGATATCCTT
23330788 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
52 1 0.01
53 32 0.27
54 40 0.34
55 43 0.36
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGGAATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:23330819 original size:47 final size:47
Alignment explanation
Indices: 23330767--23330887 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
23330757 ATGCCTTGGA
*
23330767 ATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGCTCCAAAC
1 ATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGCTCCAAAC
*
23330814 ATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAAC
1 ATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGCTCCAAAC
*
23330861 ATGGTCTTACATGGTATCCTTGTCTTA
1 ATGGTCTTACATGATATCCTTGTCTTA
23330888 GTACCAATGC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
ATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGCTCCAAAC
Found at i:23337349 original size:53 final size:54
Alignment explanation
Indices: 23337268--23337467 Score: 217
Period size: 53 Copynumber: 3.7 Consensus size: 54
23337258 TTTCCTTTTT
* * * **
23337268 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTACTCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACTCTTGCCTTATA
* * *
23337321 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACCTGGGAC-CTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACTC-TTGCCTTATA
* * * *
23337375 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACT-CTTGCCTTATA
* * *
23337430 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG
23337468 ATATCCTTAT
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 44 0.35
54 35 0.28
55 44 0.35
56 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACTCTTGCCTTATA
Found at i:23337463 original size:54 final size:54
Alignment explanation
Indices: 23337279--23337475 Score: 229
Period size: 55 Copynumber: 3.6 Consensus size: 54
23337269 AACTTACCAT
* * ** * *
23337279 TGCCATGTCTTGACATGGTCTTATGTGGTA-CTCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATC-CTTGCCTTATAGAACTCATCAA
* **
23337332 TGCCATGCCTTGGCATGGTCTTACCTGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
23337387 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
23337441 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
23337476 ATCTTACCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 35 0.28
54 42 0.34
55 44 0.35
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:23337510 original size:47 final size:47
Alignment explanation
Indices: 23337454--23337575 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
23337444 CATGCCTTGG
* *
23337454 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGCTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
*
23337501 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
*
23337548 CATGGTCTTACATGGTATCATTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
23337576 GTGCTAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
Found at i:23338377 original size:30 final size:31
Alignment explanation
Indices: 23338330--23338393 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
23338320 CATTCCCTAA
23338330 CTAAAACTTTGGCAAAATTATAATTATGCCC
1 CTAAAACTTTGGCAAAATTATAATTATGCCC
* * *
23338361 CTAAACCTTT-GCAAAATTATGATTTTGCCC
1 CTAAAACTTTGGCAAAATTATAATTATGCCC
23338391 CTA
1 CTA
23338394 GGCTCGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (31 bp):
CTAAAACTTTGGCAAAATTATAATTATGCCC
Found at i:23347747 original size:20 final size:20
Alignment explanation
Indices: 23347724--23347771 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
23347714 AGAGCATTAA
* *
23347724 AAATGCTAACAGAGGCATCG
1 AAATGCAAACAGAGGCACCG
*
23347744 AAATGCAAATAGAGGCACCG
1 AAATGCAAACAGAGGCACCG
*
23347764 AAGTGCAA
1 AAATGCAA
23347772 TCCCGTATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (20 bp):
AAATGCAAACAGAGGCACCG
Found at i:23360634 original size:79 final size:81
Alignment explanation
Indices: 23360498--23360682 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
23360488 TTGAATGATG
*
23360498 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
23360562 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
23360577 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23360639 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
23360657 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23360683 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:23360696 original size:40 final size:40
Alignment explanation
Indices: 23360499--23360682 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
23360489 TGAATGATGT
* * * *
23360499 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
23360539 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
23360579 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23360617 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23360658 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23360683 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:23360704 original size:79 final size:79
Alignment explanation
Indices: 23360551--23360715 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
23360541 GGACTAAGAT
* **
23360551 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
23360616 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
23360630 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
23360693 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23360709 CCGAAGG
1 CCGAAGG
23360716 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23364123 original size:38 final size:38
Alignment explanation
Indices: 23364072--23364148 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
23364062 TAGGGAATTC
23364072 ATTTACAAACCGTCTATAGAATCCGGCCAAACCCAAAA
1 ATTTACAAACCGTCTATAGAATCCGGCCAAACCCAAAA
23364110 ATTTACAAACCGTCTATAGAATCCGGCCAAACCCAAAA
1 ATTTACAAACCGTCTATAGAATCCGGCCAAACCCAAAA
23364148 A
1 A
23364149 GCTTTGAACC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.18
Consensus pattern (38 bp):
ATTTACAAACCGTCTATAGAATCCGGCCAAACCCAAAA
Found at i:23365665 original size:48 final size:49
Alignment explanation
Indices: 23365594--23365719 Score: 147
Period size: 48 Copynumber: 2.7 Consensus size: 49
23365584 TAAGATGCCA
* * *
23365594 ATGCCATGTCCCAAAAATGGTCTTACACTAGCACTCATCTCAATGT-C-G
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCACAATGTGCTG
* *
23365642 ATGCCATGTCCTAGACATGGTCTTACACT-G-GCTCTCACAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTCACAATGT-GCTG
23365690 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
23365720 TCACAATAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 8 0.12
46 13 0.19
47 16 0.24
48 30 0.45
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTCACAATGTGCTG
Found at i:23380481 original size:28 final size:28
Alignment explanation
Indices: 23380446--23380507 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
23380436 AATGTGACCG
*
23380446 TGTGTCGCACATGGCTAAGACACACGCC
1 TGTGTCGCACACGGCTAAGACACACGCC
23380474 TGTGTCGCACACGGCTAAGACACACGCC
1 TGTGTCGCACACGGCTAAGACACACGCC
23380502 TGTGTC
1 TGTGTC
23380508 TCTGCCTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (28 bp):
TGTGTCGCACACGGCTAAGACACACGCC
Found at i:23385417 original size:27 final size:27
Alignment explanation
Indices: 23385360--23385511 Score: 144
Period size: 27 Copynumber: 5.6 Consensus size: 27
23385350 CATGATAGCT
** * * *
23385360 AAAGAATAGCCTTTGTGGCAAATTTTG
1 AAAGAATAGCCTTTGTGGTGAACTCTA
*
23385387 AAAGAATAGCCATTGTGGTGAACTCTA
1 AAAGAATAGCCTTTGTGGTGAACTCTA
* * *
23385414 AAAGGATAGTCTTTGTGTTGAACTCTA
1 AAAGAATAGCCTTTGTGGTGAACTCTA
* * * *
23385441 AAAGAATAACCTTTGTGATGAATTCTG
1 AAAGAATAGCCTTTGTGGTGAACTCTA
* * *
23385468 AAAGACTAGTCTTTGTGGTGAACTTTA
1 AAAGAATAGCCTTTGTGGTGAACTCTA
23385495 AAAGAA-ATGCCTTTGTG
1 AAAGAATA-GCCTTTGTG
23385512 AAAAATTCTG
Statistics
Matches: 99, Mismatches: 25, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
26 1 0.01
27 98 0.99
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33
Consensus pattern (27 bp):
AAAGAATAGCCTTTGTGGTGAACTCTA
Found at i:23385508 original size:54 final size:54
Alignment explanation
Indices: 23385420--23385523 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
23385410 TCTAAAAGGA
* **
23385420 TAGTCTTTGTGTTGAACTCTAAAAGAATAACCTTTGTGATGAATTCTGAAAGAC
1 TAGTCTTTGTGGTGAACTCTAAAAGAATAACCTTTGTGAAAAATTCTGAAAGAC
* *
23385474 TAGTCTTTGTGGTGAACTTTAAAAGAA-ATGCCTTTGTGAAAAATTCTGAA
1 TAGTCTTTGTGGTGAACTCTAAAAGAATA-ACCTTTGTGAAAAATTCTGAA
23385524 TAGATCACCT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.02
54 43 0.98
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.36
Consensus pattern (54 bp):
TAGTCTTTGTGGTGAACTCTAAAAGAATAACCTTTGTGAAAAATTCTGAAAGAC
Found at i:23385509 original size:81 final size:81
Alignment explanation
Indices: 23385360--23385511 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
23385350 CATGATAGCT
* * * * *
23385360 AAAGAATAGCCTTTGTGGCAAATTTTGAAAGAATAGCCATTGTGGTGAACTCTAAAAGGATAGTC
1 AAAGAATAACCTTTGTGACAAATTCTGAAAGAATAGCCATTGTGGTGAACTCTAAAAGAATAGCC
23385425 TTTGTGTTGAACTCTA
66 TTTGTGTTGAACTCTA
** * * * *
23385441 AAAGAATAACCTTTGTGATGAATTCTGAAAGACTAGTCTTTGTGGTGAACTTTAAAAGAA-ATGC
1 AAAGAATAACCTTTGTGACAAATTCTGAAAGAATAGCCATTGTGGTGAACTCTAAAAGAATA-GC
23385505 CTTTGTG
65 CTTTGTG
23385512 AAAAATTCTG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.33
Consensus pattern (81 bp):
AAAGAATAACCTTTGTGACAAATTCTGAAAGAATAGCCATTGTGGTGAACTCTAAAAGAATAGCC
TTTGTGTTGAACTCTA
Found at i:23387451 original size:90 final size:90
Alignment explanation
Indices: 23387356--23387522 Score: 203
Period size: 90 Copynumber: 1.9 Consensus size: 90
23387346 AGATCCTATG
* * * * * *
23387356 TAAGACCATATCAGGGATAAGGCTTC-GACATC-ATTAAGTGATTTCGTATAAGACCATATTTGG
1 TAAGACCATATCAGGGACAAGGCGTCAG-CACCGATT-AGAGACTTCGTATAAGACCATATCTGG
23387419 GACATGGCATCGATATGAGGTCCCGTA
64 GACATGGCATCGATATGAGGTCCCGTA
* * * *
23387446 TAAGACCATGTCTGGGACATGGCGTCAGCACCGATTCGAGACTTCGTATAAGACCATATCTGGGA
1 TAAGACCATATCAGGGACAAGGCGTCAGCACCGATTAGAGACTTCGTATAAGACCATATCTGGGA
*
23387511 TATGGCATCGAT
66 CATGGCATCGAT
23387523 GTTCGGTTCC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
90 60 0.94
91 4 0.06
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (90 bp):
TAAGACCATATCAGGGACAAGGCGTCAGCACCGATTAGAGACTTCGTATAAGACCATATCTGGGA
CATGGCATCGATATGAGGTCCCGTA
Found at i:23387462 original size:42 final size:42
Alignment explanation
Indices: 23387400--23387558 Score: 122
Period size: 42 Copynumber: 3.6 Consensus size: 42
23387390 TAAGTGATTT
*
23387400 CGTATAAGACCATATTTGGGACATGGCATCGATATGAGGTCC
1 CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
* * * * *
23387442 CGTATAAGACCATGTCTGGGACATGGCGTCAGCACCGATTCGA-GACTT
1 CGTATAAGACCATATCTGGGACATGGCATC-G-A--TA-T-GAGGTC-C
* * ** *
23387490 CGTATAAGACCATATCTGGGATATGGCATCGATGTTCGGTTC
1 CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
* * *
23387532 CATCTAAGACCATGTCTGGGACATGGC
1 CGTATAAGACCATATCTGGGACATGGC
23387559 TTTGGTACCT
Statistics
Matches: 89, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
42 50 0.56
43 3 0.03
44 1 0.01
46 2 0.02
47 4 0.04
48 29 0.33
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (42 bp):
CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
Found at i:23389441 original size:77 final size:78
Alignment explanation
Indices: 23389272--23389462 Score: 201
Period size: 77 Copynumber: 2.5 Consensus size: 78
23389262 CAAACATAAC
* * * * * *
23389272 ACCAGCACGAAGCCTACG-GGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGTGGGATTT
1 ACCAGCACGAAGCCTGCGAGGA-TTTAAGCCCGGATATAATACCAGCACGAAGCCTGTGGGATTT
23389336 AACCCGGATAAAAT
65 AACCCGGATAAAAT
* * *
23389350 ACTAGCACGAAGCCTGCG-GGATTTAA-CCCGGATATATTACCAGCACGAAGCCTGCTGGGTTTT
1 ACCAGCACGAAGCCTGCGAGGATTTAAGCCCGGATATAATACCAGCACGAAGCCTG-TGGGATTT
*
23389413 AACCCGGATATAAT
65 AACCCGGATAAAAT
* * **
23389427 TCCAGCA-TATAGCCTGCGAGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGAGGATTTAAGCCCGGATA
23389463 CACATCAAAT
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
76 24 0.25
77 38 0.40
78 25 0.26
79 8 0.08
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGCGAGGATTTAAGCCCGGATATAATACCAGCACGAAGCCTGTGGGATTTA
ACCCGGATAAAAT
Found at i:23389443 original size:39 final size:38
Alignment explanation
Indices: 23389267--23389433 Score: 199
Period size: 38 Copynumber: 4.3 Consensus size: 38
23389257 AAACCCAAAC
* * * *
23389267 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
23389307 ATAATACCAGCACTAGGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
23389345 AAAATACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
23389383 ATATTACCAGCACGAAGCCTGCTGGGTTTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGC-GGGATTTAACCCGGAT
*
23389422 ATAATTCCAGCA
1 ATAATACCAGCA
23389434 TATAGCCTGC
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
38 59 0.55
39 28 0.26
40 21 0.19
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:23389453 original size:39 final size:39
Alignment explanation
Indices: 23389272--23389462 Score: 140
Period size: 38 Copynumber: 4.9 Consensus size: 39
23389262 CAAACATAAC
* * * * * * *
23389272 ACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAAT
1 ACCAGCACGAAGCCTGC-TGAGTTTTAACCCGGATATATT
* * * * * *
23389312 ACCAGCACTAGGCCTG-TGGGATTTAACCCGGATAAAAT
1 ACCAGCACGAAGCCTGCTGAGTTTTAACCCGGATATATT
* * *
23389350 ACTAGCACGAAGCCTGC-GGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCTGAGTTTTAACCCGGATATATT
*
23389388 ACCAGCACGAAGCCTGCTGGGTTTTAACCCGGATATAATT
1 ACCAGCACGAAGCCTGCTGAGTTTTAACCCGGATAT-ATT
*
23389428 -CCAGCA-TATAGCCTGC-GAGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCTGAGT-TTTAA-CCCGGATA
23389463 CACATCAAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
38 66 0.53
39 35 0.28
40 24 0.19
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (39 bp):
ACCAGCACGAAGCCTGCTGAGTTTTAACCCGGATATATT
Found at i:23393917 original size:43 final size:43
Alignment explanation
Indices: 23393856--23394205 Score: 547
Period size: 43 Copynumber: 8.1 Consensus size: 43
23393846 CCTTGCTCGA
** * *
23393856 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* * * *
23393899 ATCACTGGCATGGAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* **
23393942 ATCACCGACACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
*
23393985 ATCACCGGCACGAAGCCTACTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
*
23394028 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
23394071 ATCACCAGCACAAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
23394114 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
23394157 ATCACCGGTACGAAGCCTGCAAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
23394200 ATCACC
1 ATCACC
23394206 TAGTTTCATG
Statistics
Matches: 285, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 285 1.00
ACGTcount: A:0.33, C:0.34, G:0.22, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
Found at i:23395848 original size:38 final size:38
Alignment explanation
Indices: 23395766--23395957 Score: 210
Period size: 38 Copynumber: 5.0 Consensus size: 38
23395756 AAACCCAAAC
* * * *
23395766 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
23395806 ATAATACCAGCACTAGGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
23395844 ATAATACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
23395882 ATATTA-CAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * * *
23395919 ATAATTCCA-CA-TATAGCCTGCGGGTCTTTAAGCCGGAT
1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAACCCGGAT
23395957 A
1 A
23395958 CACATCAAAT
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
36 1 0.01
37 46 0.35
38 60 0.46
39 3 0.02
40 21 0.16
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:23395913 original size:75 final size:78
Alignment explanation
Indices: 23395774--23395923 Score: 216
Period size: 75 Copynumber: 2.0 Consensus size: 78
23395764 ACATAACACC
* * * *
23395774 AGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGTGGGATTTAACC
1 AGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
23395839 CGGATATAATACT
66 CGGATATAATACT
* * *
23395852 AGCACGAAGCCTGCGGGA-TTT-AACCCGGATATATTA-CAGCACGAAGCCTGCGGGATTTAACC
1 AGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
23395914 CGGATATAAT
66 CGGATATAAT
23395924 TCCACATATA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 33 0.51
76 12 0.18
77 3 0.05
78 17 0.26
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (78 bp):
AGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
CGGATATAATACT
Found at i:23395949 original size:75 final size:76
Alignment explanation
Indices: 23395766--23395957 Score: 210
Period size: 75 Copynumber: 2.5 Consensus size: 76
23395756 AAACCCAAAC
* * * * * * *
23395766 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGTGGG
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATACCAGCACGAAGCCTGCGGG
23395831 ATTTAACCCGGAT
64 ATTTAACCCGGAT
* *
23395844 ATAATACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATTA-CAGCACGAAGCCTGCGGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGGAT
23395908 TTAACCCGGAT
66 TTAACCCGGAT
* * * *
23395919 ATAATTCCA-CA-TATAGCCTGCGGGTCTTTAAGCCGGATA
1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAACCCGGATA
23395958 CACATCAAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
73 1 0.01
74 12 0.12
75 47 0.48
76 12 0.12
77 3 0.03
78 23 0.23
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (76 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGGAT
TTAACCCGGAT
Found at i:23408826 original size:14 final size:15
Alignment explanation
Indices: 23408809--23408841 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
23408799 TATTTATAGT
23408809 TTAATTGAACTTAA-
1 TTAATTGAACTTAAC
*
23408823 TTAATTTAACTTAAC
1 TTAATTGAACTTAAC
23408838 TTAA
1 TTAA
23408842 ATTAATCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (15 bp):
TTAATTGAACTTAAC
Found at i:23409661 original size:19 final size:19
Alignment explanation
Indices: 23409637--23409674 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23409627 AAGACAAGCC
23409637 CACCTTATATTATCTCAGT
1 CACCTTATATTATCTCAGT
23409656 CACCTTATATTATCTCAGT
1 CACCTTATATTATCTCAGT
23409675 TTCTCCCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (19 bp):
CACCTTATATTATCTCAGT
Found at i:23422935 original size:42 final size:43
Alignment explanation
Indices: 23422824--23423018 Score: 179
Period size: 42 Copynumber: 4.6 Consensus size: 43
23422814 TCCAATATGT
* *
23422824 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
* *
23422867 GATTTACGTGTAATACCACGTTTGGGACGTTGGCATCGATTTAA
1 GA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
* * * * *
23422911 GA-TACGTGTAAGACCATGTCTGGGACGTCGACATCG-TATAT
1 GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
* * * *
23422952 GATTTCATGTAAGACC-CTATTTGGGACAG-TGGCATCGA-TT--
1 GATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATTTAA
* *
23422992 GATTACATGTAAGACCACGTTTGGGAC
1 GATTACGTGTAAGACCACGTCTGGGAC
23423019 ATTGCTATGG
Statistics
Matches: 125, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
40 23 0.18
41 6 0.05
42 54 0.43
43 3 0.02
44 39 0.31
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
Found at i:23426923 original size:28 final size:28
Alignment explanation
Indices: 23426891--23426945 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
23426881 AACGAAGTGT
*
23426891 TAACACATGAAAAATGAATGTGTCTTAC
1 TAACACATGAAAAATGAATATGTCTTAC
23426919 TAACACATGAAAAATGAATATGTCTTA
1 TAACACATGAAAAATGAATATGTCTTA
23426946 ACACCATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (28 bp):
TAACACATGAAAAATGAATATGTCTTAC
Found at i:23431683 original size:40 final size:40
Alignment explanation
Indices: 23431592--23431814 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
23431582 TTATTCGGAT
* * *
23431592 TATAACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTGC
1 TATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
* * * * * ** *
23431632 TCTATCTGGGCTATGTCCCGAAGGCATTTATGCTAGCGAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
23431672 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
23431712 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
23431752 TATAAT-CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGC
1 TAT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-C
*
23431792 TATATCC-GGCTAAATCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGG
23431815 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 20 0.13
40 136 0.86
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:23439691 original size:40 final size:40
Alignment explanation
Indices: 23439626--23439808 Score: 257
Period size: 40 Copynumber: 4.6 Consensus size: 40
23439616 TTATTCGGAT
* * *
23439626 TATAACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTGC
1 TATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
23439666 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
23439706 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
23439746 TATAAT-CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGC
1 TAT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-C
* *
23439786 TATATCC-AGCTAAATCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGG
23439809 TACTTGGTTT
Statistics
Matches: 133, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
39 19 0.14
40 112 0.84
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:23442868 original size:27 final size:27
Alignment explanation
Indices: 23442829--23442954 Score: 137
Period size: 27 Copynumber: 4.7 Consensus size: 27
23442819 AATATGAGAA
*
23442829 CCTGTAGGGTAGAATTATTGAAATACC
1 CCTGTAGGGTAGAATTACTGAAATACC
* * *
23442856 CCTGTTGGATAGAATTACCGAAATACC
1 CCTGTAGGGTAGAATTACTGAAATACC
* * *
23442883 CTTGTATGGTAGAAATACTGAAATACC
1 CCTGTAGGGTAGAATTACTGAAATACC
* *
23442910 CCTGTAGGGTAGAATTACCGAGATA-C
1 CCTGTAGGGTAGAATTACTGAAATACC
* *
23442936 CCTCGTGGGGTAAAATTAC
1 CCT-GTAGGGTAGAATTAC
23442955 CATTTTGCCT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 4 0.05
27 77 0.95
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
CCTGTAGGGTAGAATTACTGAAATACC
Found at i:23442905 original size:54 final size:54
Alignment explanation
Indices: 23442831--23442951 Score: 163
Period size: 54 Copynumber: 2.3 Consensus size: 54
23442821 TATGAGAACC
* * *
23442831 TGTAGGGTAGAATTATTGAAATACCCCTGTTGGATAGAATTACCGAAATACCCT
1 TGTAGGGTAGAAATACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCT
* * *
23442885 TGTATGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCT
1 TGTAGGGTAGAAATACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCT
* *
23442939 CGTGGGGTA-AAAT
1 TGTAGGGTAGAAAT
23442952 TACCATTTTG
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
53 4 0.07
54 54 0.93
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (54 bp):
TGTAGGGTAGAAATACTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCT
Found at i:23443315 original size:22 final size:22
Alignment explanation
Indices: 23443283--23443341 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
23443273 CCCGTTATCG
* *
23443283 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACATAAAT
* * *
23443305 ATGGCTTTGTGCCATCATGACT
1 ATGGCTTTGTGCCAACATAAAT
*
23443327 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
23443342 GCGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACATAAAT
Found at i:23443529 original size:27 final size:26
Alignment explanation
Indices: 23443498--23443633 Score: 137
Period size: 27 Copynumber: 5.0 Consensus size: 26
23443488 ATTCTGTTAA
* *
23443498 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCT-ATTCTG
* *
23443525 ATGGCTCTGTCACAATATTCTATTTCTG
1 GTGGCTCTGCCACAATA-TCTA-TTCTG
*
23443553 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCAC-AATATCTATTCTG
* *
23443580 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTAT-TCTG
* * *
23443607 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATTCTG
23443633 G
1 G
23443634 CAGCCATGCT
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
26 13 0.14
27 53 0.58
28 22 0.24
29 4 0.04
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTATTCTG
Found at i:23443564 original size:55 final size:54
Alignment explanation
Indices: 23443498--23443632 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 54
23443488 ATTCTGTTAA
* * ** *
23443498 GTGGCTTTGCCACATTATCTGATTCTGATGGCTCTGTCACAATATTCTATTTCTG
1 GTGGCTATGCCACAATATCTGATTCTGATGGCTCTACCACAATA-TCTATATCTG
* *
23443553 GTGGCTATGCCACAAATATCT-ATTCTGGTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTATGCCAC-AATATCTGATTCTGATGGCTCTACCACAATATCTATATCTG
* * *
23443607 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
23443633 GCAGCCATGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
53 12 0.18
54 18 0.26
55 32 0.47
56 6 0.09
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATATCTGATTCTGATGGCTCTACCACAATATCTATATCTG
Found at i:23443760 original size:6 final size:6
Alignment explanation
Indices: 23443751--23443854 Score: 79
Period size: 6 Copynumber: 16.8 Consensus size: 6
23443741 TTGCATTCAC
* * *
23443751 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACATA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * *
23443801 ATTCTG ATTCTG ATTTTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
23443850 ATTCT
1 ATTCT
23443855 CATTTTAATT
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.05
6 63 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:23443782 original size:25 final size:25
Alignment explanation
Indices: 23443754--23443815 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
23443744 CATTCACATT
* * *
23443754 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACATAATA
*
23443779 CTGATTCTGATTCTGTCACATAATT
1 CTGATTCTGATTCTGTCACATAATA
23443804 CTGATTCTGATT
1 CTGATTCTGATT
23443816 TTGATTATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACATAATA
Found at i:23443786 original size:31 final size:31
Alignment explanation
Indices: 23443751--23443854 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
23443741 TTGCATTCAC
*
23443751 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
23443782 ATTCTGATTCTG-TCACATAATT--CTGATTCTG
1 ATTCTGATTCTGAT-TC-T-GTTACCTGATTCTG
* * *
23443813 ATTTTGATTATGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
23443844 ATTCTGATTCT
1 ATTCTGATTCT
23443855 CATTTTAATT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
29 1 0.02
30 2 0.04
31 50 0.88
32 2 0.04
33 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:23443852 original size:37 final size:37
Alignment explanation
Indices: 23443780--23443852 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
23443770 TACCTGATAC
*
23443780 TGATTCTGATTCTGTCACATAATTCTGATTCTGATTT
1 TGATTATGATTCTGTCACATAATTCTGATTCTGATTT
* *
23443817 TGATTATGATTCTGTCACCTGATTCTGATTCTGATT
1 TGATTATGATTCTGTCACATAATTCTGATTCTGATT
23443853 CTCATTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.16, G:0.15, T:0.48
Consensus pattern (37 bp):
TGATTATGATTCTGTCACATAATTCTGATTCTGATTT
Found at i:23443866 original size:37 final size:37
Alignment explanation
Indices: 23443788--23443866 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
23443778 ACTGATTCTG
* * *
23443788 ATTCTGTCACATAATTCTGATTCTGATTTTGATTATG
1 ATTCTGTCACATAATTCTGATTCTGATTCTCATTATA
* * *
23443825 ATTCTGTCACCTGATTCTGATTCTGATTCTCATTTTA
1 ATTCTGTCACATAATTCTGATTCTGATTCTCATTATA
23443862 ATTCT
1 ATTCT
23443867 AGTTCTGATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.18, G:0.11, T:0.49
Consensus pattern (37 bp):
ATTCTGTCACATAATTCTGATTCTGATTCTCATTATA
Found at i:23446878 original size:43 final size:43
Alignment explanation
Indices: 23446830--23446914 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
23446820 GCCATAGTCC
23446830 AACTATGGTCTTACACATACATTGCCATGGCCCTGCCGTGGTA
1 AACTATGGTCTTACACATACATTGCCATGGCCCTGCCGTGGTA
23446873 AACTATGGTCTTACACATACATTGCCATGGCCCTGCCGTGGT
1 AACTATGGTCTTACACATACATTGCCATGGCCCTGCCGTGGT
23446915 CTTACATTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (43 bp):
AACTATGGTCTTACACATACATTGCCATGGCCCTGCCGTGGTA
Found at i:23458077 original size:20 final size:21
Alignment explanation
Indices: 23458052--23458090 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
23458042 TTCAAACTTG
*
23458052 TTTTATTTTTATTT-TTTTAC
1 TTTTATTTCTATTTATTTTAC
23458072 TTTTATTTCTATTTATTTT
1 TTTTATTTCTATTTATTTT
23458091 TGAAGACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTATTTCTATTTATTTTAC
Found at i:23469677 original size:24 final size:25
Alignment explanation
Indices: 23469650--23469701 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
23469640 GACTAGCCTC
23469650 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
**
23469674 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
23469699 TTT
1 TTT
23469702 CTCACTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:23469771 original size:21 final size:21
Alignment explanation
Indices: 23469747--23469809 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
23469737 CATATAATAA
*
23469747 GTATATCTTAGCATATCATGT
1 GTATATCATAGCATATCATGT
*
23469768 GTATCTCATAGCATATCATGT
1 GTATATCATAGCATATCATGT
* *
23469789 GCATATTAT-GTCATATCATGT
1 GTATATCATAG-CATATCATGT
23469810 ATAACAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (21 bp):
GTATATCATAGCATATCATGT
Found at i:23469803 original size:10 final size:11
Alignment explanation
Indices: 23469757--23469809 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
23469747 GTATATCTTA
23469757 GCATATCATGT
1 GCATATCATGT
* * *
23469768 GTATCTCAT-A
1 GCATATCATGT
23469778 GCATATCATGT
1 GCATATCATGT
*
23469789 GCATATTATGT
1 GCATATCATGT
23469800 -CATATCATGT
1 GCATATCATGT
23469810 ATAACAATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (11 bp):
GCATATCATGT
Done.