Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 79 of 253
Found at i:23794121 original size:26 final size:26
Alignment explanation
Indices: 23794092--23794199 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
23794082 TGGTACAAAT
23794092 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
23794118 TGATAATGGATTAGGTGAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23794144 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
23794170 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23794196 TGAT
1 TGAT
23794200 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23798502 original size:40 final size:40
Alignment explanation
Indices: 23798418--23798531 Score: 183
Period size: 40 Copynumber: 2.8 Consensus size: 40
23798408 TGGATGATAA
* **
23798418 CCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTGACTACAT
*
23798459 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTACAT
23798499 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG
23798532 GGCTAAGTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 47 0.69
41 21 0.31
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTACAT
Found at i:23798537 original size:30 final size:30
Alignment explanation
Indices: 23798501--23798560 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
23798491 TACTACATCC
*
23798501 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGT
23798531 GGGCTAAGTCCCGAAGGCATTGGTGCGAGT
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGT
23798561 TACTATATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.38, T:0.22
Consensus pattern (30 bp):
GGGCTAAGTCCCGAAGGCATTGGTGCGAGT
Found at i:23798575 original size:70 final size:69
Alignment explanation
Indices: 23798461--23798599 Score: 215
Period size: 70 Copynumber: 2.0 Consensus size: 69
23798451 GACTAGTTCC
* *
23798461 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCA-TTGAG
23798526 CGAGT
65 CGAGT
* * * *
23798531 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCTGGGCTATGTCCTGAAGGCATTGAGC
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGC
23798596 GAGT
66 GAGT
23798600 AGCTATATCC
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
69 9 0.14
70 54 0.86
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (69 bp):
GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGAGC
GAGT
Found at i:23798587 original size:40 final size:39
Alignment explanation
Indices: 23798530--23798608 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 39
23798520 TTTGTGCGAG
*
23798530 TGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTA-CTATATC
1 TGGGCTAAGTCCCGAAGGCATT-GAGCGAG-TAGCTATATC
* *
23798570 TGGGCTATGTCCTGAAGGCATTGAGCGAGTAGCTATATC
1 TGGGCTAAGTCCCGAAGGCATTGAGCGAGTAGCTATATC
23798609 CTGTTAAATC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
38 2 0.06
39 13 0.37
40 20 0.57
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (39 bp):
TGGGCTAAGTCCCGAAGGCATTGAGCGAGTAGCTATATC
Found at i:23810564 original size:40 final size:40
Alignment explanation
Indices: 23810505--23810648 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
23810495 CTCGCACAAG
* * * * *
23810505 GCCTTCTGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCTGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
23810545 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCTGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
23810585 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCTGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
23810626 GCCTT-TGGACTTAGCCCGGATAT
1 GCCTTCTGGACTTAGCCCGGATAT
23810649 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 70 0.78
41 17 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCTGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:23811879 original size:38 final size:38
Alignment explanation
Indices: 23811837--23811912 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
23811827 CAAGAACTCC
23811837 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
23811875 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
23811913 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:23813581 original size:30 final size:30
Alignment explanation
Indices: 23813547--23813607 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
23813537 TTCCCGAGCC
23813547 TAGGGGCAAAAGTGTAAATATGCGAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCGAAAGTT
* * * *
23813577 TAGGGGCAAAATTGTAATTTTGCTAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCGAAAGTT
23813607 T
1 T
23813608 GATTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCGAAAGTT
Found at i:23821775 original size:8 final size:9
Alignment explanation
Indices: 23821745--23821774 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
23821735 ATGGTAAAAG
23821745 GTTTTGGGT
1 GTTTTGGGT
23821754 GTTTTGGG-
1 GTTTTGGGT
23821762 GTTTTGGGT
1 GTTTTGGGT
23821771 GTTT
1 GTTT
23821775 GAAGCATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.00, C:0.00, G:0.43, T:0.57
Consensus pattern (9 bp):
GTTTTGGGT
Found at i:23823105 original size:12 final size:13
Alignment explanation
Indices: 23823088--23823119 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23823078 GCAAATGTTA
23823088 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
23823100 AGTTTTGATGCAT
1 AGTTTTGATGCAT
23823113 -GTTTTGA
1 AGTTTTGA
23823120 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:23830146 original size:12 final size:13
Alignment explanation
Indices: 23830129--23830160 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
23830119 GCAAATGTTA
23830129 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
23830141 AGTTTTGATGCAT
1 AGTTTTGATGCAT
23830154 -GTTTTGA
1 AGTTTTGA
23830161 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:23842627 original size:37 final size:37
Alignment explanation
Indices: 23842574--23842676 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
23842564 CGAATAGTCC
*
23842574 CCACACGTAGTTATCGGGTCTTACTCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
* *
23842611 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
23842648 CCACACGTAGTCATCGGGTCTTACTCGGA
1 CCACACGTAGTCATCGGGTCTTACTCGGA
23842677 ATAAATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACTCGGACAAAATCT
Found at i:23842875 original size:48 final size:48
Alignment explanation
Indices: 23842817--23843147 Score: 495
Period size: 48 Copynumber: 6.9 Consensus size: 48
23842807 ATATACACAC
* *
23842817 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
23842865 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAG
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
23842913 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACGTGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
23842961 ATCTCATTCATATTTTACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
23843009 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
23843057 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATAT-C-C
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
23843103 ATCTCATACACATTTCGCATTAGCCATTCCGCTTTACCACATATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
23843148 TACGCTTCCA
Statistics
Matches: 259, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
46 40 0.15
47 1 0.00
48 218 0.84
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:23843191 original size:47 final size:46
Alignment explanation
Indices: 23843120--23843358 Score: 230
Period size: 47 Copynumber: 5.1 Consensus size: 46
23843110 ACACATTTCG
* * * * *
23843120 CATTAGCCATTCCGCTTTACCACATATAT-ACGCTTC-CACGTTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATATCACG-TTCTCA--TTCATCA
** *
23843167 CATTGGCCATTTTGCCTTATCACATATATGCATGTTCTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* * ** *
23843214 CATTGGCCATTCGGCCTTATCACATATATGTATGTTCAAATTCACCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* * *
23843261 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* * *
23843308 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
23843355 CATT
1 CATT
23843359 AAATCCTAAA
Statistics
Matches: 172, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
47 165 0.96
48 3 0.02
49 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCACATATATCACGTTCTCATTCATCA
Found at i:23843223 original size:94 final size:93
Alignment explanation
Indices: 23843120--23843358 Score: 257
Period size: 94 Copynumber: 2.5 Consensus size: 93
23843110 ACACATTTCG
* * ** ** **
23843120 CATTAGCCATTCCGCTTTACCACATATA-TACGCTTCCACGTTCGTCACATTGGCCATTTTGCCT
1 CATTGGCCATTCCGCCTTACCACATATAGTACG-TT-CAAATTCACCACATTGGCCATTCGGCCT
* *
23843184 TATCACATATATGCATGTTCTCATTCATCA
64 TATCACACATATGCATGTTCACATTCATCA
* * *
23843214 CATTGGCCATTCGGCCTTATCACATATATGTATGTTCAAATTCACCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCCGCCTTACCACATATA-GTACGTTCAAATTCACCACATTGGCCATTCGGCCTT
23843279 ATCACACATATGCATGTTCACATTCATCA
65 ATCACACATATGCATGTTCACATTCATCA
* * * * *
23843308 CATTGGCCATTCGGCCTTATCACACATAT-GCATGTTCACATTCATCACATT
1 CATTGGCCATTCCGCCTTA-C-CACATATAGTACGTTCAAATTCACCACATT
23843359 AAATCCTAAA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
94 112 0.90
95 2 0.02
96 10 0.08
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (93 bp):
CATTGGCCATTCCGCCTTACCACATATAGTACGTTCAAATTCACCACATTGGCCATTCGGCCTTA
TCACACATATGCATGTTCACATTCATCA
Found at i:23843307 original size:25 final size:25
Alignment explanation
Indices: 23843279--23843356 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
23843269 ATTCGGCCTT
23843279 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
23843304 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
23843326 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
23843351 ATCACA
1 ATCACA
23843357 TTAAATCCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:23847135 original size:40 final size:40
Alignment explanation
Indices: 23847082--23847317 Score: 328
Period size: 40 Copynumber: 5.9 Consensus size: 40
23847072 GAATACACAT
* *
23847082 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
* * * * * **
23847122 CACTAGTACGAATGCTCTTTGGGACTTAACCCTAATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
*
23847162 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
* * *
23847202 TACCAGCACGTATGCTCTTCGAGACTTAGCCCTGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
*
23847242 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
* *
23847282 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGAT
23847318 CATATATAAC
Statistics
Matches: 170, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
Found at i:23847310 original size:80 final size:80
Alignment explanation
Indices: 23847084--23847313 Score: 370
Period size: 80 Copynumber: 2.9 Consensus size: 80
23847074 ATACACATCA
* * * * * *
23847084 CCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACTAGTACGAATGCTCTTTGGGACTT
1 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTT
*
23847149 AACCCTAATATAACT
66 AGCCCTAATATAACT
* *
23847164 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAATACCAGCACGTATGCTCTTCGAGACTT
1 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTT
*
23847229 AGCCCTGATATAACT
66 AGCCCTAATATAACT
23847244 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTT
23847309 AGCCC
66 AGCCC
23847314 GGATCATATA
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 138 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
CCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACGTATGCTCTTCGGGACTT
AGCCCTAATATAACT
Found at i:23848659 original size:37 final size:37
Alignment explanation
Indices: 23848602--23848697 Score: 156
Period size: 37 Copynumber: 2.6 Consensus size: 37
23848592 CGAATAGTCC
*
23848602 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
23848639 CCACACGAAGTCATCAGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
23848676 CCACACGTAGTCATCGGGTCTT
1 CCACACGTAGTCATCGGGTCTT
23848698 TCTCGGAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:23848903 original size:48 final size:48
Alignment explanation
Indices: 23848845--23849051 Score: 333
Period size: 48 Copynumber: 4.3 Consensus size: 48
23848835 ATATACACAC
* *
23848845 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
23848893 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
23848941 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACGTGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
23848989 ATCTCATTCATATTTTACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
23849037 ATCTCATATATATTT
1 ATCTCATACATATTT
23849052 TGTAACACCC
Statistics
Matches: 148, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:23852254 original size:21 final size:21
Alignment explanation
Indices: 23852187--23852254 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
23852177 TTTCACATTC
23852187 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGG-CATTAGGCCTT
*** * *
23852209 ATCACATATACTTTCA--CATT
1 ATCACATCGGCATT-AGGCCTT
23852229 CATCACATCGGCATTAGGCCTT
1 -ATCACATCGGCATTAGGCCTT
23852251 ATCA
1 ATCA
23852255 ACATATACAC
Statistics
Matches: 32, Mismatches: 10, Indels: 9
0.63 0.20 0.18
Matches are distributed among these distances:
20 4 0.12
21 17 0.53
22 11 0.34
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (21 bp):
ATCACATCGGCATTAGGCCTT
Found at i:23852289 original size:45 final size:47
Alignment explanation
Indices: 23852132--23852635 Score: 856
Period size: 47 Copynumber: 11.0 Consensus size: 47
23852122 CATCAAATAC
23852132 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
23852179 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT--ACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
23852222 TCACATTCATCACATCGG-CATTAGGCCTTATCA-ACATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
23852267 TCACATTCAT-ACATCGGCCATTAGGCCTTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCC-TTATCACATATATACACTT
23852314 TCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACACTT
23852362 TCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
23852408 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
23852455 TCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
23852500 TCACATTCATCACATCGGCCATTAGGCCTTATCAC-CATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
23852546 TCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACA--T
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
23852590 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
23852636 GTCTTGGCTG
Statistics
Matches: 438, Mismatches: 4, Indels: 30
0.93 0.01 0.06
Matches are distributed among these distances:
42 15 0.03
43 26 0.06
44 26 0.06
45 112 0.26
46 70 0.16
47 143 0.33
48 46 0.11
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
Found at i:23852625 original size:276 final size:274
Alignment explanation
Indices: 23852132--23852635 Score: 906
Period size: 276 Copynumber: 1.8 Consensus size: 274
23852122 CATCAAATAC
23852132 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
23852197 CCATTAGGCCTTATCACATATACTTTCACATTCATCACATCGGCATTAGGCCTTATCAACATATA
66 CCATTAGGCCTTATCACATATACTTTCACATTCATCACATCGGCATTAGGCCTTATCAACATATA
23852262 CACTTTCACATTCATACATCGGCCATTAGGCCTTTATCACATATATACACTTTCACATTCATCAC
131 CACTTTCACATTCATACATCGGCCATTAGGCCTTTATCACATATATACAC-TTCACATTCATCAC
23852327 ATCGGCCATTAGGCCTTATCACATTATATACACTTTCACATTCATCACATCGGCATTAGGCCTTA
195 ATCGGCCATTAGGCCTTATCACA-TATATACACTTTCACATTCATCACATCGGCATTAGGCCTTA
23852392 TCACATATATACACTT
259 TCACATATATACACTT
*
23852408 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
* *
23852473 CTATTAGGCCTTATCACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACCAT
66 CCATTAGGCCTTATCACATAT--ACTTTCACATTCATCACATCGG-CATTAGGCCTTATCAACAT
23852538 ATACACTTTCACATTCATCACATCGG-CATTAGGCC-TTATCACATATATACA-TTCACATTCAT
128 ATACACTTTCACATTCAT-ACATCGGCCATTAGGCCTTTATCACATATATACACTTCACATTCAT
23852600 CACATCGGCCATTAGGCCTTATCACATATATACACT
192 CACATCGGCCATTAGGCCTTATCACATATATACACT
23852636 GTCTTGGCTG
Statistics
Matches: 221, Mismatches: 3, Indels: 9
0.95 0.01 0.04
Matches are distributed among these distances:
275 10 0.05
276 121 0.55
278 38 0.17
279 45 0.20
280 7 0.03
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (274 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACATATACTTTCACATTCATCACATCGGCATTAGGCCTTATCAACATATA
CACTTTCACATTCATACATCGGCCATTAGGCCTTTATCACATATATACACTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATC
ACATATATACACTT
Found at i:23856239 original size:38 final size:39
Alignment explanation
Indices: 23856151--23856402 Score: 215
Period size: 39 Copynumber: 6.9 Consensus size: 39
23856141 CGAATACACG
* * *
23856151 TCACCAGCATGATTGCTCTTC-GA--TAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
*
23856187 TCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATA-A
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
*
23856225 ACACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
23856264 TCACTAGCATGAATGCTC-TCGGGACTTAGCCCGG--A-A
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATA
23856300 TCACT---A-GAATGCTC--CGGACTTA--CCGG--ATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
* * *
23856329 TCACT-GCA-CAATGCTCTTCGGATCTTAGTCCGGATATGG
1 TCACTAGCATGAATGCTCTTCGGA-CTTAGCCCGGATAT-A
* *
23856368 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTC-GGACTTAGCCCGGA
23856403 CATCATTCAA
Statistics
Matches: 186, Mismatches: 11, Indels: 34
0.81 0.05 0.15
Matches are distributed among these distances:
28 5 0.03
29 6 0.03
30 7 0.04
31 9 0.05
32 8 0.04
33 5 0.03
34 4 0.02
36 28 0.15
37 3 0.02
38 40 0.22
39 45 0.24
40 15 0.08
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATA
Found at i:23856266 original size:77 final size:77
Alignment explanation
Indices: 23856156--23856364 Score: 229
Period size: 77 Copynumber: 2.9 Consensus size: 77
23856146 ACACGTCACC
* *
23856156 AGCATGATTGCTCTTC-GA--TAGCACGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCC
1 AGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCC
23856218 CGGATAAACACT
66 CGGATAAACACT
*
23856230 AGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCATGAATGCTC-TCGGGACTTAGC
1 AGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGC
*
23856294 CCGG--AATCACT
65 CCGGATAAACACT
*
23856305 ---A-GAATGCTC--CGGACTTA--CCGG--ATATCACT-GCAC-AATGCTCTTCGGATCTTAGT
1 AGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA-CTTAGC
23856358 CCGGATA
65 CCGGATA
23856365 TGGTCACTTA
Statistics
Matches: 121, Mismatches: 6, Indels: 24
0.80 0.04 0.16
Matches are distributed among these distances:
63 10 0.08
64 14 0.12
65 8 0.07
66 1 0.01
67 4 0.03
69 8 0.07
71 8 0.07
72 1 0.01
74 15 0.12
75 8 0.07
76 2 0.02
77 42 0.35
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (77 bp):
AGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCC
CGGATAAACACT
Found at i:23856321 original size:30 final size:31
Alignment explanation
Indices: 23856274--23856333 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
23856264 TCACTAGCAT
23856274 GAATGCTCTCGGGACTTAGCCCGGA-ATCACTA
1 GAATGCTCTCGGGACTTA--CCGGATATCACTA
23856306 GAATGCTC-C-GGACTTACCGGATATCACT
1 GAATGCTCTCGGGACTTACCGGATATCACT
23856334 GCACAATGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 5 0.19
29 6 0.22
30 7 0.26
31 1 0.04
32 8 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (31 bp):
GAATGCTCTCGGGACTTACCGGATATCACTA
Found at i:23856744 original size:29 final size:29
Alignment explanation
Indices: 23856705--23856783 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
23856695 CTTAATAATC
*
23856705 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
23856735 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
23856764 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
23856784 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:23856826 original size:43 final size:43
Alignment explanation
Indices: 23856765--23856867 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
23856755 TGCATTTCAA
23856765 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
23856808 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
23856851 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
23856868 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:23858780 original size:37 final size:37
Alignment explanation
Indices: 23858730--23858808 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
23858720 TTATTACGAA
* *
23858730 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
23858767 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
23858804 GTCTT
1 GTCTT
23858809 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:23859005 original size:47 final size:47
Alignment explanation
Indices: 23858927--23859366 Score: 758
Period size: 47 Copynumber: 9.4 Consensus size: 47
23858917 CCCTTCGGGA
* * * * * * *
23858927 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23858974 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23859021 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23859068 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23859114 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23859161 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23859208 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23859254 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23859301 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23859348 CTTATCACATATATACACT
1 CTTATCACATATATACACT
23859367 GTCTTGGCTG
Statistics
Matches: 376, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 90 0.24
47 286 0.76
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23859194 original size:140 final size:140
Alignment explanation
Indices: 23858927--23859366 Score: 756
Period size: 140 Copynumber: 3.1 Consensus size: 140
23858917 CCCTTCGGGA
* * * * * * * * *
23858927 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
23858992 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
23859057 GGCCATTAGGC
130 GGCCATTAGGC
23859068 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
*
23859132 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
23859197 GGCCATTAGGC
130 GGCCATTAGGC
*
23859208 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACACATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
23859273 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
23859338 GCCATTAGGC
131 GCCATTAGGC
23859348 CTTATCACATATATACACT
1 CTTATCACATATATACACT
23859367 GTCTTGGCTG
Statistics
Matches: 285, Mismatches: 12, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
139 1 0.00
140 246 0.86
141 38 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:23859242 original size:187 final size:187
Alignment explanation
Indices: 23858927--23859366 Score: 756
Period size: 187 Copynumber: 2.4 Consensus size: 187
23858917 CCCTTCGGGA
* * * * * * * * *
23858927 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23858992 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
23859057 GGCCATTAGGCCTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GG-CATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23859114 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23859179 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
23859244 GGCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
23859301 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23859366 T
66 T
23859367 GTCTTGGCTG
Statistics
Matches: 239, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
186 13 0.05
187 226 0.95
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (187 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23861868 original size:48 final size:47
Alignment explanation
Indices: 23861794--23861925 Score: 185
Period size: 46 Copynumber: 2.8 Consensus size: 47
23861784 TAGGGGTGTC
* *
23861794 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATAC-CATCTCAT
* **
23861842 ACATATTTCACATTAGCCATTTGGCTTTACCTTATAT-CCATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACCATCTCAT
* *
23861888 ACACATTTCGCATTAGCCATTCGGCTTTACCACATATA
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATA
23861926 TACGCTTCCA
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 39 0.53
47 1 0.01
48 33 0.45
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACCATCTCAT
Found at i:23861969 original size:47 final size:46
Alignment explanation
Indices: 23861898--23862089 Score: 199
Period size: 47 Copynumber: 4.1 Consensus size: 46
23861888 ACACATTTCG
* * * *
23861898 CATTAGCCATTCGGCTTTACCACATATAT-ACGCTTC-CACGTTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATATCACG-TTCTCA--TTCATCA
*** *
23861945 CATTGGCCATTTTTCCTTATCACATATATGCATGTTCTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* *
23861992 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
* * *
23862039 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CACGTTCTCATTCATCA
23862086 CATT
1 CATT
23862090 AAATCCTAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
47 122 0.95
48 3 0.02
49 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.35
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCACATATATCACGTTCTCATTCATCA
Found at i:23862001 original size:94 final size:94
Alignment explanation
Indices: 23861898--23862090 Score: 255
Period size: 94 Copynumber: 2.1 Consensus size: 94
23861888 ACACATTTCG
* * * ***
23861898 CATTAGCCATTCGGCTTTACCACATATATACGC-T-TCCACGTTCGTCACATTGGCCATTTTTCC
1 CATTAGCCATTCGGCCTTACCACATATAT--GCATGTCCACATTCATCACATTGGCCATTCGGCC
* *
23861961 TTATCACATATATGCATGTTCTCATTCATCA
64 TTATCACACATATGCATGTTCACATTCATCA
* * *
23861992 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATGCATGTCCACATTCATCACATTGGCCATTCGGCCTT
23862057 ATCACACATATGCATGTTCACATTCATCA
66 ATCACACATATGCATGTTCACATTCATCA
23862086 CATTA
1 CATTA
23862091 AATCCTAAAT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
92 2 0.02
93 1 0.01
94 82 0.96
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.35
Consensus pattern (94 bp):
CATTAGCCATTCGGCCTTACCACATATATGCATGTCCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATGCATGTTCACATTCATCA
Found at i:23862016 original size:22 final size:22
Alignment explanation
Indices: 23861988--23862062 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
23861978 GTTCTCATTC
23861988 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
23862010 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
23862034 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
23862057 ATCACA
1 ATCACA
23862063 CATATGCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.40
23 7 0.17
24 7 0.17
25 10 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:23870005 original size:27 final size:26
Alignment explanation
Indices: 23869949--23870005 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
23869939 CAACCTTATC
* * *
23869949 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATTAGTAATTTTCCA
23869975 CCTAGGGGTAAATCT-GTAAATTTTCCA
1 CCTAGGGGTAAAT-TAGT-AATTTTCCA
23870002 CCTA
1 CCTA
23870006 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTCCA
Found at i:23884639 original size:27 final size:28
Alignment explanation
Indices: 23884555--23884652 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
23884545 CATGAGATTG
* * * *
23884555 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
23884584 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
23884612 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23884639 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
23884653 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:23884663 original size:27 final size:27
Alignment explanation
Indices: 23884583--23884665 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
23884573 TAAATTGTAC
* *
23884583 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23884611 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
23884638 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
23884665 A
1 A
23884666 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:23887181 original size:27 final size:27
Alignment explanation
Indices: 23887150--23887814 Score: 145
Period size: 27 Copynumber: 24.6 Consensus size: 27
23887140 TTACTTTACC
*
23887150 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
23887177 AAATTAC-CAAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
**
23887204 AAATTAC-CCAATA-CCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
23887229 AAATTACTGAAATACCCAC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
23887256 AAATTACTAAAATACCATCGATTTTATA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
23887284 AAATTACTGAAATA--CTC-ATATAAGATA
1 AAATTACTGAAATACCCTCGAT-T-TG-TA
* * ** *
23887311 GAATTAC-CATTTTACCCTTGA-TTG-A
1 AAATTACTGA-AATACCCTCGATTTGTA
*** * *
23887336 CAGAATTACTGTTTTACCCTCAATTTATA
1 -A-AATTACTGAAATACCCTCGATTTGTA
* * ** **
23887365 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * *** *
23887392 GAATTACCGTCTTACCC-CTGATTTATA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * ** * **
23887419 GAATTAC-CATTTTACCCTTGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * **
23887446 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
23887473 AAATTACCAAAATACCC-CTACTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* *
23887500 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
23887527 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * * *
23887555 AAATTATTGAAATTCCCTCAACTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
*
23887583 AAATTACT-AAAGTACCCTCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * ** **
23887610 GAATTA-TTATTGTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* ** **
23887637 GAATTACT-ATTTTACCCTTTATTTAG-A
1 AAATTACTGA-AATACCCTCGATTT-GTA
* ** *
23887664 AAATTAC-CATTTTACCCTCGA-TTGTG
1 AAATTACTGA-AATACCCTCGATTTGTA
* * **
23887690 AAATTACTAAAATACCC-CTATAGGATA
1 AAATTACTGAAATACCCTCGATTTG-TA
* ** * *
23887717 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
23887744 AAATTACTAAAATACCACT-GGTTTGTG
1 AAATTACTGAAATACC-CTCGATTTGTA
* *
23887771 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
23887798 AAATTACCAAAATACCC
1 AAATTACTGAAATACCC
23887815 CTTATTTACA
Statistics
Matches: 485, Mismatches: 112, Indels: 82
0.71 0.16 0.12
Matches are distributed among these distances:
24 1 0.00
25 22 0.05
26 32 0.07
27 358 0.74
28 68 0.14
29 3 0.01
30 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:23887245 original size:52 final size:53
Alignment explanation
Indices: 23887144--23887298 Score: 161
Period size: 52 Copynumber: 2.9 Consensus size: 53
23887134 AATACTTTAC
* * * * *
23887144 TTTACCAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCCCAA
1 TTTACAAAATTACTAAAATA-CCTCGATTTGTAAAATTACTGAAA-TACCCACAA
* ** *
23887198 TTTATAAAATTAC-CCAATACCTCGATTTGTAAAATTACTGAAATACCCACAG
1 TTTACAAAATTACTAAAATACCTCGATTTGTAAAATTACTGAAATACCCACAA
* *
23887250 TTTGCAAAATTACTAAAATACCATCGATTTTATAAAATTACTGAAATAC
1 TTTACAAAATTACTAAAATACC-TCGA-TTTGTAAAATTACTGAAATAC
23887299 TCATATAAGA
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 36 0.43
53 13 0.15
54 15 0.18
55 20 0.24
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.30
Consensus pattern (53 bp):
TTTACAAAATTACTAAAATACCTCGATTTGTAAAATTACTGAAATACCCACAA
Found at i:23887366 original size:54 final size:54
Alignment explanation
Indices: 23887308--23887454 Score: 224
Period size: 54 Copynumber: 2.7 Consensus size: 54
23887298 CTCATATAAG
* *
23887308 ATAGAATTACCATTTTACCCTTGATTGACAGAATTACTGTTTTA-CCCTCAATTT
1 ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTCTTACCCCT-AATTT
* * *
23887362 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCCTGATTT
1 ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTCTTACCCCTAATTT
*
23887416 ATAGAATTACCATTTTACCCTTGATTTACAAAATTACTG
1 ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTG
23887455 AAATACCCTT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 80 0.95
55 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTCTTACCCCTAATTT
Found at i:23887462 original size:54 final size:54
Alignment explanation
Indices: 23887308--23887481 Score: 215
Period size: 54 Copynumber: 3.2 Consensus size: 54
23887298 CTCATATAAG
* * *
23887308 ATAGAATTACCATTTTACCCTTGATTGACAGAATTACTGTTTTA-CCCTCAATTT
1 ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTATTACCCCT-GATTT
* * *
23887362 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCCTGATTT
1 ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTATTACCCCTGATTT
* * * * *
23887416 ATAGAATTACCATTTTACCCTTGATTTACAAAATTACTGAAATACCCTTGGTTT
1 ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTATTACCCCTGATTT
* *
23887470 ACAAAATTACCA
1 ATAGAATTACCA
23887482 AAATACCCCT
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 100 0.96
55 4 0.04
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTATTACCCCTGATTT
Found at i:23887821 original size:27 final size:27
Alignment explanation
Indices: 23887685--23887862 Score: 123
Period size: 27 Copynumber: 6.6 Consensus size: 27
23887675 TTACCCTCGA
* *
23887685 TTGTGAAATTACTAAAATACCCC-TAT
1 TTGTAAAATTACCAAAATACCCCTTAT
** * *
23887711 AGGATAGAATTACCAAAACACCCC-TAGT
1 TTG-TAAAATTACCAAAATACCCCTTA-T
* * **
23887739 TTGTAAAATTACTAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTTAT
* * *
23887766 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-TAT
23887793 TTGTAAAATTACCAAAATACCCCTTAT
1 TTGTAAAATTACCAAAATACCCCTTAT
**
23887820 TTACAAAATT-CCAGAAATA-CCCTTAAT
1 TTGTAAAATTACCA-AAATACCCCTT-AT
* *
23887847 TTGTAGATTTACCAAA
1 TTGTAAAATTACCAAA
23887863 GCAGTCTTGT
Statistics
Matches: 115, Mismatches: 29, Indels: 15
0.72 0.18 0.09
Matches are distributed among these distances:
26 12 0.10
27 94 0.82
28 9 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTTAT
Found at i:23887829 original size:54 final size:54
Alignment explanation
Indices: 23887433--23887851 Score: 199
Period size: 54 Copynumber: 7.7 Consensus size: 54
23887423 TACCATTTTA
* * *** ** *
23887433 CCCTTGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATAC
1 CCCTT-ATTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAATAC
* ** **
23887488 CCC-TACTTTGTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACTAAAATACC
1 CCCTTA-TTTATAAAATTACCGAAATACCCTC-AATTTGTAAAATTACTAAAATA-C
* * ** * * *
23887543 CCCTGATTTGTAAAATTATTGAAATTCCCTCAACTTGTAAAAATTACTAAAGTA-
1 CCCTTATTTATAAAATTACCGAAATACCCTCAATTTGT-AAAATTACTAAAATAC
* * ** ** * ** * ***
23887597 CCCTCGATTTATAGAATTA-TTATTGTACCCTCGATTTACAGAATTACTATTTTAC
1 CCCT-TATTTATAAAATTACCGA-AATACCCTCAATTTGTAAAATTACTAAAATAC
* * ** * *
23887652 CCTTTATTTAGAAAATTACC-ATTTTACCCTCGA-TTGTGAAATTACTAAAATAC
1 CCCTTATTTATAAAATTACCGA-AATACCCTCAATTTGTAAAATTACTAAAATAC
** * * * *
23887705 CCC-TATAGGATAGAATTACCAAAACACCC-CTAGTTTGTAAAATTACTAAAATAC
1 CCCTTAT-TTATAAAATTACCGAAATACCCTC-AATTTGTAAAATTACTAAAATAC
* ** * * *
23887759 CACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTTATTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAATAC
* *
23887813 CCCTTATTTACAAAATT-CCAGAAATACCCTTAATTTGTA
1 CCCTTATTTATAAAATTACC-GAAATACCCTCAATTTGTA
23887852 GATTTACCAA
Statistics
Matches: 275, Mismatches: 72, Indels: 35
0.72 0.19 0.09
Matches are distributed among these distances:
52 4 0.01
53 31 0.11
54 167 0.61
55 57 0.21
56 16 0.06
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (54 bp):
CCCTTATTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAATAC
Found at i:23889964 original size:85 final size:85
Alignment explanation
Indices: 23889821--23889999 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
23889811 GGCCGGCCAT
23889821 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
23889886 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
23889906 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
23889971 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
23889991 GGGCATGGG
1 GAGCATGGG
23890000 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:23891741 original size:12 final size:12
Alignment explanation
Indices: 23891724--23891749 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23891714 CATTCCGAAG
23891724 TATATATATACA
1 TATATATATACA
23891736 TATATATATACA
1 TATATATATACA
23891748 TA
1 TA
23891750 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:23892280 original size:27 final size:28
Alignment explanation
Indices: 23892196--23892293 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
23892186 CATGAGATTG
* * * *
23892196 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
23892225 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
23892253 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23892280 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
23892294 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:23892304 original size:27 final size:27
Alignment explanation
Indices: 23892224--23892306 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
23892214 TAAATTGTAC
* *
23892224 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23892252 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
23892279 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
23892306 A
1 A
23892307 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:23900017 original size:12 final size:12
Alignment explanation
Indices: 23900000--23900026 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23899990 ATTCCGAAGT
23900000 ATATATATATAC
1 ATATATATATAC
23900012 ATATATATATAC
1 ATATATATATAC
23900024 ATA
1 ATA
23900027 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:23900557 original size:27 final size:28
Alignment explanation
Indices: 23900473--23900570 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
23900463 CATGAGATTG
* * * *
23900473 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
23900502 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
23900530 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23900557 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
23900571 GACTTACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:23900581 original size:27 final size:27
Alignment explanation
Indices: 23900501--23900583 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
23900491 TAAATTGTAC
* *
23900501 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGACTATAT
* *
23900529 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGACTATAT
*
23900556 AGCACTGAGTGTGCGGACTT-ACTATAT
1 AGCACTAAGTGTGC-GACTTGACTATAT
23900583 A
1 A
23900584 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGACTATAT
Found at i:23906263 original size:48 final size:49
Alignment explanation
Indices: 23906211--23906375 Score: 156
Period size: 50 Copynumber: 3.3 Consensus size: 49
23906201 CTCTGCATTT
*
23906211 AATAAAGTCATGCATTATGTAACTTTCA-TTAGTTAAGCA-TGCATCATA
1 AATAAAGTCATGCATTATGTAACTCTCAGTTAGTTAAG-ATTGCATCATA
* *
23906259 AATAATGACATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCATA
1 AATAAAGTCATGCATTATGTAACTCTCA-GTTAGTTAAGATTGCATCATA
* * * * * * *
23906309 AATTATA-TCGTGCATTATGTAACTCCCATGGTAGTTAAAGTTTGCATCTTTT
1 AA-TAAAGTCATGCATTATGTAACTCTCA-GTTAGTT-AAGATTGCATC-ATA
*
23906361 AATGAAGTCATGCAT
1 AATAAAGTCATGCAT
23906376 GAATTAGTAA
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
48 25 0.26
49 1 0.01
50 45 0.47
51 14 0.15
52 10 0.11
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (49 bp):
AATAAAGTCATGCATTATGTAACTCTCAGTTAGTTAAGATTGCATCATA
Found at i:23906311 original size:50 final size:50
Alignment explanation
Indices: 23906218--23906356 Score: 169
Period size: 50 Copynumber: 2.8 Consensus size: 50
23906208 TTTAATAAAG
*
23906218 TCATGCATTATGTAACTTTCA--TTAGTTAAGCA-TGCATCATAAATAATGA
1 TCATGCATTATGTAACTCTCATGTTAGTTAAG-ATTGCATCATAAATAAT-A
*
23906267 -CATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCATAAATTATA
1 TCATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCATAAATAATA
* * * *
23906316 TCGTGCATTATGTAACTCCCATGGTAGTTAAAGTTTGCATC
1 TCATGCATTATGTAACTCTCATGTTAGTT-AAGATTGCATC
23906357 TTTTAATGAA
Statistics
Matches: 79, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
48 19 0.24
49 2 0.03
50 48 0.61
51 10 0.13
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.37
Consensus pattern (50 bp):
TCATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCATAAATAATA
Found at i:23908952 original size:40 final size:39
Alignment explanation
Indices: 23908862--23909086 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
23908852 TTGAATGATG
* * * *
23908862 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
23908902 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23908942 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
23908981 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
23909021 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
23909062 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
23909087 AATGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.22
40 116 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23909104 original size:80 final size:80
Alignment explanation
Indices: 23908862--23909119 Score: 215
Period size: 80 Copynumber: 3.2 Consensus size: 80
23908852 TTGAATGATG
* * * * * * * *
23908862 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
23908925 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* * *
23908942 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTTCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
23909006 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
23909021 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
* *
23909085 TGAATGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
23909101 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
23909120 TACGTGATTT
Statistics
Matches: 151, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 74 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:23911817 original size:39 final size:40
Alignment explanation
Indices: 23911740--23911846 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
23911730 TAGCTCCTCG
* * *
23911740 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
23911780 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
23911819 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
23911847 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:23911845 original size:79 final size:80
Alignment explanation
Indices: 23911746--23911966 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
23911736 CTCGTTCAAG
* * * ** * *
23911746 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
23911809 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
23911825 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
23911890 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
23911905 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
23911967 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 36 0.31
80 75 0.64
81 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:23911897 original size:80 final size:80
Alignment explanation
Indices: 23911786--23911966 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
23911776 CTCATTCAAT
* * *
23911786 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
23911849 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
23911865 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
23911929 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
23911946 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
23911967 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:23911926 original size:40 final size:40
Alignment explanation
Indices: 23911783--23911966 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
23911773 TAACTCATTC
* *
23911783 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
23911823 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
23911863 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
23911903 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
23911944 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23911967 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:23919703 original size:40 final size:40
Alignment explanation
Indices: 23919615--23919799 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
23919605 TAACTCATTC
* * *
23919615 AATGCCTTCGGGACTTAACCCGGATTTTAAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
23919656 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
23919696 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
23919736 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
23919777 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23919800 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 5 0.04
40 82 0.67
41 35 0.29
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:23919759 original size:80 final size:81
Alignment explanation
Indices: 23919618--23919799 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
23919608 CTCATTCAAT
* * *
23919618 GCCTTCGGGACTTAACCCGGATTTTAAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-
*
23919682 TAGT-A-TCTCGCACAAA
65 TAGTCACT-TAGCACAAA
* **
23919698 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAAAAACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
23919761 ATAGTCACTTAGCACAAA
64 ATAGTCACTTAGCACAAA
*
23919779 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
23919800 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.03
80 54 0.61
81 31 0.35
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (81 bp):
GCCTTCGGGACTTAACCCGGATATTAAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATAT
AGTCACTTAGCACAAA
Found at i:23922057 original size:46 final size:41
Alignment explanation
Indices: 23921951--23922091 Score: 148
Period size: 38 Copynumber: 3.4 Consensus size: 41
23921941 GCTCCTCGTT
* * *
23921951 CAAATGCCTTCGGGACATAGCCCGG-TTA-TATAACTCGCA-
1 CAAATGCCTTCGGGACTTAACCCGGATTAGTA-ACCTCGCAC
23921990 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACCTCGGCA-
1 CAAATGCCTTCGGGACTTAACCCGGA-TTAGTAACCTC-GCAC
*
23922031 CAACATGCCTATCAGGGACTTTAACCCGGATTAGTAACTTCGCAC
1 CAA-ATGCCT-TC-GGGAC-TTAACCCGGATTAGTAACCTCGCAC
23922076 CAAATGCCTTCGGGAC
1 CAAATGCCTTCGGGAC
23922092 CCGGTTTCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 17
0.81 0.04 0.16
Matches are distributed among these distances:
38 21 0.24
39 1 0.01
40 7 0.08
41 6 0.07
42 6 0.07
43 8 0.09
44 11 0.12
45 18 0.20
46 10 0.11
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAACCCGGATTAGTAACCTCGCAC
Found at i:23923239 original size:13 final size:13
Alignment explanation
Indices: 23923221--23923245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23923211 AGATGAGCAC
23923221 TTTTTTCTTTTCG
1 TTTTTTCTTTTCG
23923234 TTTTTTCTTTTC
1 TTTTTTCTTTTC
23923246 TAGTTTCGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTTTTCTTTTCG
Found at i:23924670 original size:24 final size:24
Alignment explanation
Indices: 23924643--23924718 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
23924633 TGATGATGTG
23924643 AATGGTATATATGTGATAAGGCCA
1 AATGGTATATATGTGATAAGGCCA
** * **
23924667 AATGG-CCA-ATGTGATGAATGTGA
1 AATGGTATATATGTGAT-AAGGCCA
*
23924690 AAT-GTATATATGTGAATAAGGCCG
1 AATGGTATATATGTG-ATAAGGCCA
23924714 AATGG
1 AATGG
23924719 CCATGTGATG
Statistics
Matches: 36, Mismatches: 11, Indels: 9
0.64 0.20 0.16
Matches are distributed among these distances:
22 8 0.22
23 9 0.25
24 16 0.44
25 3 0.08
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.28
Consensus pattern (24 bp):
AATGGTATATATGTGATAAGGCCA
Found at i:23924734 original size:47 final size:44
Alignment explanation
Indices: 23924633--23924981 Score: 356
Period size: 47 Copynumber: 7.5 Consensus size: 44
23924623 ATTTGGATAT
23924633 TGATG-ATGTG-AATGGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAT-GTATATATGTGATAAGGCC-AATGGCC-ATG
23924678 TGATGAATGTGAAATGTATATATGTGAATAAGGCCGAATGGCCATG
1 TGATGAATGTGAAATGTATATATGTG-ATAAGGCC-AATGGCCATG
*
23924724 TGATGAAATGTGAAATGCTATAT-TGTGATAAGGCCGAATGGCGAATG
1 TGATG-AATGTGAAATG-TATATATGTGATAAGGCC-AATGGC-CATG
*
23924771 T-ATGAATGTGAAATGTATATTATGGTGATTAGG-CAATGGCCAATG
1 TGATGAATGTGAAATGTATA-TAT-GTGATAAGGCCAATGGCC-ATG
23924816 TGATGAATGTGAAAGTGCTATATAGTGTGATAAGGCCAATGGCCATG
1 TGATGAATGTGAAA-TG-TATATA-TGTGATAAGGCCAATGGCCATG
23924863 TGATGAATGTGAACATGTAATATATTGTGATACAGAGCCAGATGG-CAT-
1 TGATGAATGTGAA-ATGT-ATATA-TGTGATA-AG-GCCA-ATGGCCATG
*
23924911 TGATG-ATGTGAAAGTGTATATAT-TGAATGAGGCCAATGGCCAATG
1 TGATGAATGTGAAA-TGTATATATGTG-ATAAGGCCAATGGCC-ATG
*
23924956 TGATGAATAGTAGAGAGTGTATATAT
1 TGATGAAT-GT-GA-AATGTATATAT
23924982 ATTATAACTC
Statistics
Matches: 267, Mismatches: 8, Indels: 55
0.81 0.02 0.17
Matches are distributed among these distances:
42 4 0.01
43 5 0.02
44 10 0.04
45 35 0.13
46 65 0.24
47 99 0.37
48 37 0.14
49 8 0.03
50 4 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (44 bp):
TGATGAATGTGAAATGTATATATGTGATAAGGCCAATGGCCATG
Found at i:23924957 original size:93 final size:94
Alignment explanation
Indices: 23924633--23924981 Score: 383
Period size: 93 Copynumber: 3.8 Consensus size: 94
23924623 ATTTGGATAT
*
23924633 TGATG-ATGTG-AA-TGGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAATGT
1 TGATGAATGTGAAAGTGCTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAATGT
23924695 ATATA-TGTGAATAAGGCC-GAATGGCCATG
66 ATATATTGTG-ATAAGGCCAG-ATGGCCATG
* *
23924724 TGATGAAATGTGAAA-TGCTATAT-TGTGATAAGGCCGAATGGCGAATGT-ATGAATGTGAAATG
1 TGATG-AATGTGAAAGTGCTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAATG
* *
23924786 TATATTATGGTGATTAGG-CA-ATGGCCAATG
65 TATA-TATTGTGATAAGGCCAGATGGCC-ATG
23924816 TGATGAATGTGAAAGTGCTATATAGTGTGATAAGGCC-AATGGCC-ATGTGATGAATGTGAACAT
1 TGATGAATGTGAAAGTGCTATATA-TGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAA-AT
23924879 GTAATATATTGTGATACAGAGCCAGATGG-CAT-
64 GT-ATATATTGTGATA-AG-GCCAGATGGCCATG
*
23924911 TGATG-ATGTGAAAGTG-TATATAT-TGAATGAGGCC-AATGGCCAATGTGATGAATAGTAGAGA
1 TGATGAATGTGAAAGTGCTATATATGTG-ATAAGGCCAAATGGCCAATGTGATGAAT-GT-GA-A
*
23924972 GTGTATATAT
62 ATGTATATAT
23924982 ATTATAACTC
Statistics
Matches: 226, Mismatches: 10, Indels: 41
0.82 0.04 0.15
Matches are distributed among these distances:
91 22 0.10
92 54 0.24
93 69 0.31
94 55 0.24
95 15 0.07
96 4 0.02
97 3 0.01
98 4 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (94 bp):
TGATGAATGTGAAAGTGCTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAATGT
ATATATTGTGATAAGGCCAGATGGCCATG
Found at i:23929008 original size:30 final size:28
Alignment explanation
Indices: 23928972--23929066 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 28
23928962 GAGATTGGCA
* *
23928972 TAAGTGTGCGGGTTTAAAATTGTACAGCAC
1 TAAGTGTGCGAGTTT--AATTATACAGCAC
* *
23929002 TAAGTGTGCGAGTTTGATTATATAGCAC
1 TAAGTGTGCGAGTTTAATTATACAGCAC
* *
23929030 TAAGTGTGCGAG-TTGATTATATAGCAC
1 TAAGTGTGCGAGTTTAATTATACAGCAC
*
23929057 TGAGTGTGCG
1 TAAGTGTGCG
23929067 GACTTAATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
27 24 0.40
28 22 0.37
30 14 0.23
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
TAAGTGTGCGAGTTTAATTATACAGCAC
Found at i:23929053 original size:27 final size:28
Alignment explanation
Indices: 23928997--23929066 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
23928987 AAAATTGTAC
23928997 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
23929025 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
23929052 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23929067 GACTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:23929077 original size:27 final size:27
Alignment explanation
Indices: 23928997--23929079 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
23928987 AAAATTGTAC
* *
23928997 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23929025 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
23929052 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
23929079 A
1 A
23929080 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:23932445 original size:47 final size:47
Alignment explanation
Indices: 23932394--23932782 Score: 517
Period size: 47 Copynumber: 8.1 Consensus size: 47
23932384 TTAGGATTTT
* *
23932394 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
23932441 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
23932492 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
23932539 ATGTGATGAATGTGAACCTGTATATATATATGCGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
23932592 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
23932639 ATGTGATGAATGTGAACATGCGTATGTGTGATCAGGCCGGATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
23932686 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
23932733 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
23932780 ATG
1 ATG
23932783 CGAAACGTGT
Statistics
Matches: 304, Mismatches: 28, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
47 216 0.71
48 1 0.00
49 2 0.01
51 43 0.14
52 1 0.00
53 41 0.13
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:23932496 original size:24 final size:24
Alignment explanation
Indices: 23932468--23932543 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
23932458 CCGTATATAT
23932468 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
23932492 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
23932515 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
23932539 ATGTG
1 ATGTG
23932544 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:23932630 original size:100 final size:98
Alignment explanation
Indices: 23932394--23932782 Score: 578
Period size: 94 Copynumber: 4.0 Consensus size: 98
23932384 TTAGGATTTT
*
23932394 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
23932459 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
23932492 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
23932557 TGTATATATATATGCGTAATAAGGCCGAATGGCCA
66 TG--TATATATATGTGTGATAAGGCCGAATGGCCA
23932592 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*** * *
23932656 ---ATGCGTATGTGTGATCAGGCCGGATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
23932686 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
23932751 TG-A-ATATATGTG-G-TAAGGCCGAATGGCTA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
23932780 ATG
1 ATG
23932783 CGAAACGTGT
Statistics
Matches: 265, Mismatches: 21, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
94 99 0.37
95 1 0.00
96 6 0.02
97 1 0.00
98 65 0.25
99 1 0.00
100 92 0.35
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGTATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:23932845 original size:46 final size:46
Alignment explanation
Indices: 23932756--23932846 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
23932746 GAACATGAAT
* * * *
23932756 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
23932802 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
23932847 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:23933101 original size:37 final size:37
Alignment explanation
Indices: 23932993--23933101 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
23932983 GGAAATATAT
* *
23932993 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
23933030 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
* *
23933067 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
23933102 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:23934775 original size:27 final size:27
Alignment explanation
Indices: 23934744--23935185 Score: 136
Period size: 27 Copynumber: 16.3 Consensus size: 27
23934734 TTAGTTTACC
* *
23934744 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * *
23934771 AAATTAC-CAAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
* *
23934798 AAATTACCT-AAATATCCTCGATTTGTA
1 AAATTA-CTGAAATACCCTCAATTTGTA
* *
23934825 AAATTACTGAAATACCGTCAATTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
**
23934852 AAATTACTGAAATACTCCT--ATAAGATA
1 AAATTACTGAAATAC-CCTCAATTTG-TA
* *** *
23934879 TAATTACCT-TTTTACCCTCGA-TTG-A
1 AAATTA-CTGAAATACCCTCAATTTGTA
*** *
23934904 CAGAATTA-TCGTTTTACCCTCAATTTATA
1 -A-AATTACT-GAAATACCCTCAATTTGTA
* ** * *
23934933 AAATTAC-CATTTTACCCTCGATTTATA
1 AAATTACTGA-AATACCCTCAATTTGTA
* * *** ** *
23934960 GAATTACCGTCTTACCCTTGATTTGCA
1 AAATTACTGAAATACCCTCAATTTGTA
* * ** * **
23934987 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCAATTTGTA
*** *
23935014 AAATTACTGAAATACCCTTGGTTTATA
1 AAATTACTGAAATACCCTCAATTTGTA
** ***
23935041 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
*
23935068 AAATTACTCAAATACCCCTGC--TTTGTA
1 AAATTACTGAAATA-CCCT-CAATTTGTA
* *
23935095 AAATTACTAAAATACCCCCTAATTTGTA
1 AAATTACTGAAATACCCTC-AATTTGTA
* *
23935123 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTGAAATACCCTCAATTTGT-A
* * *
23935151 AAATTA-TTAAAGTACCCTCGATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
*
23935178 GAATTACT
1 AAATTACT
23935186 ATTTTACCCT
Statistics
Matches: 323, Mismatches: 64, Indels: 55
0.73 0.14 0.12
Matches are distributed among these distances:
25 3 0.01
26 14 0.04
27 245 0.76
28 60 0.19
29 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:23935030 original size:81 final size:80
Alignment explanation
Indices: 23934837--23935048 Score: 196
Period size: 81 Copynumber: 2.6 Consensus size: 80
23934827 ATTACTGAAA
* * ** * * *
23934837 TACCGTCAATTTGCAAAATTACTGAAATACTCCT-ATAAGATATAATTACCTTTTTACCCTCGAT
1 TACCCTCAATTTACAAAATTACTGAAATAC-CCTGAT-TTATAAAATTACCGTCTTACCCTCGAT
* *
23934901 TGACAGAATTATCGTTT
64 TGACAGAATTACCATTT
* * ** * *
23934918 TACCCTCAATTTATAAAATTAC-CATTTTACCCTCGATTTATAGAATTACCGTCTTACCCTTGAT
1 TACCCTCAATTTACAAAATTACTGA-AATACCCT-GATTTATAAAATTACCGTCTTACCCTCGA-
23934982 TTG-CAGAATTACCATTT
63 TTGACAGAATTACCATTT
* *
23934999 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTATAAAATTACC
1 TACCCTCAATTTACAAAATTACTGAAATACCC-TGATTTATAAAATTACC
23935049 AAAATACCCT
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
80 4 0.04
81 93 0.89
82 7 0.07
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (80 bp):
TACCCTCAATTTACAAAATTACTGAAATACCCTGATTTATAAAATTACCGTCTTACCCTCGATTG
ACAGAATTACCATTT
Found at i:23935046 original size:54 final size:54
Alignment explanation
Indices: 23934744--23935238 Score: 194
Period size: 54 Copynumber: 9.1 Consensus size: 54
23934734 TTAGTTTACC
* * * *** * *
23934744 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCAATTTATA
1 AAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTATA
* * * * ** * * **
23934798 AAATTACCT-AAATATCCTCGATTTGTAAAATTACTGA-AATACCGTCAATTTGCA
1 AAATTA-CTGAAATACCCTTGATTTATAAAATTAC-CATTTTACCCTCGATTTATA
** * * * *
23934852 AAATTACTGAAATACTCC-T-ATAAGATATAATTACCTTTTTACCCTCGATTGACA
1 AAATTACTGAAATAC-CCTTGAT-TTATAAAATTACCATTTTACCCTCGATTTATA
* *** **
23934906 GAATTA-TCGTTTTACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTATA
1 AAATTACT-GAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTATA
* * *** ** * *
23934960 GAATTACCGTCTTACCCTTGATTTGCAGAATTACCATTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTATA
* *** * * *
23935014 AAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTATA
* * * * * *** * * *
23935068 AAATTACTCAAATACCCCTGCTTTGTAAAATTACTAAAATACCCCCTAATTTGTA
1 AAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTC-GATTTATA
* ** ***
23935123 AAATTACTGAAATACCCTCGACTTGTA-AAAATTATTAAAGTACCCTCGATTTATA
1 AAATTACTGAAATACCCTTGA-TT-TATAAAATTACCATTTTACCCTCGATTTATA
* ** * * *** * * *
23935178 GAATTACT-ATTTTACCCTCGATTTACAAAATTAATGTTTTACCTTTGATTTACA
1 AAATTACTGA-AATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTATA
23935232 AAATTAC
1 AAATTAC
23935239 CATTTTACCC
Statistics
Matches: 338, Mismatches: 88, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
53 9 0.03
54 257 0.76
55 52 0.15
56 19 0.06
57 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (54 bp):
AAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTATA
Found at i:23935122 original size:28 final size:27
Alignment explanation
Indices: 23935013--23935139 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
23935003 CTCGATTTAC
* * *
23935013 AAAATTACTGAAATACCCTTGGTTTAT
1 AAAATTACTAAAATACCCCTGGTTTGT
* *
23935040 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCCTGGTTTGT
* *
23935067 AAAATTACTCAAATACCCCTGCTTTGT
1 AAAATTACTAAAATACCCCTGGTTTGT
**
23935094 AAAATTACTAAAATACCCCCTAATTTGT
1 AAAATTACTAAAATA-CCCCTGGTTTGT
*
23935122 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
23935140 TCGACTTGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 64 0.73
28 24 0.27
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGGTTTGT
Found at i:23935193 original size:27 final size:27
Alignment explanation
Indices: 23935163--23935254 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
23935153 ATTATTAAAG
* *
23935163 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
23935190 TACCCTCGATTTACAAAATTAATGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
23935217 TACCTTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
23935244 TACCCTCGATT
1 TACCCTCGATT
23935255 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:23935316 original size:27 final size:27
Alignment explanation
Indices: 23935286--23935436 Score: 112
Period size: 27 Copynumber: 5.6 Consensus size: 27
23935276 TATAGGGTAG
* *
23935286 AATTGCCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
23935313 AATTATCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
23935340 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
23935367 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* *
23935394 AATTA-CAGAAATA-CCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTAG-TTTGTAA
* *
23935421 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
23935437 TTGTAGGATG
Statistics
Matches: 96, Mismatches: 21, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
26 9 0.09
27 79 0.82
28 8 0.08
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:23935364 original size:54 final size:54
Alignment explanation
Indices: 23935306--23935431 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
23935296 ACACCCCTAG
* * *** *
23935306 TTTGTAAAATTATCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
* **
23935360 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
* *
23935414 TTTGTAGATTTACCAAAA
1 TTTGTAAAATTACCAAAA
23935432 CACCCTTGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
Found at i:23935396 original size:81 final size:81
Alignment explanation
Indices: 23935253--23935408 Score: 183
Period size: 81 Copynumber: 1.9 Consensus size: 81
23935243 TTACCCTCGA
* * * * **
23935253 TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTGCCAAAACACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAACACCCCTAGTTTACAAAATTA
23935318 TCA-AAATACCACTGGT
66 -CAGAAATACCACTGGT
** *
23935334 TTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCT-GATTTACAAAAT
1 TTGTGAAATTACCGAAATACCC-CAATAGGGTAAAATTACCAAAACACCCCTAG-TTTACAAAAT
23935397 TACAGAAATACC
64 TACAGAAATACC
23935409 CTTGATTTGT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
80 3 0.05
81 57 0.90
82 3 0.05
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (81 bp):
TTGTGAAATTACCGAAATACCCCAATAGGGTAAAATTACCAAAACACCCCTAGTTTACAAAATTA
CAGAAATACCACTGGT
Found at i:23935418 original size:81 final size:81
Alignment explanation
Indices: 23935226--23935418 Score: 180
Period size: 81 Copynumber: 2.4 Consensus size: 81
23935216 TTACCTTTGA
* *** * * * *
23935226 TTTACAAAATTACCATTTTACCCTCGA-TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATT
1 TTTACAAAATTATCAAAATACCCTTGATTTGTGAAATTACCGAAATACCCCAATAGGGTAAAATT
*
23935290 GCCAAAACACCCCTAG
66 ACCAAAACACCCCTAG
** * **
23935306 TTTGTAAAATTATCAAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAA
1 TTTACAAAATTATCAAAATACC-CTTGATTTGTGAAATTACCGAAATACCC-CAATAGGGTAAAA
*
23935369 TTACCAAAATACCCCT-G
64 TTACCAAAACACCCCTAG
23935386 ATTTACAAAATTA-CAGAAATACCCTTGATTTGT
1 -TTTACAAAATTATCA-AAATACCCTTGATTTGT
23935419 AGATTTACCA
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
80 21 0.24
81 65 0.73
82 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (81 bp):
TTTACAAAATTATCAAAATACCCTTGATTTGTGAAATTACCGAAATACCCCAATAGGGTAAAATT
ACCAAAACACCCCTAG
Found at i:23937960 original size:27 final size:27
Alignment explanation
Indices: 23937929--23938650 Score: 195
Period size: 27 Copynumber: 26.7 Consensus size: 27
23937919 TTAGTTTACC
* *
23937929 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
23937956 AAATTAC-CAAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** *
23937983 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
23938010 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
23938037 AAATTACTGAAATACCTTCGATTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* **
23938065 AAGTTACTGAAATACTCCT-G-TAAGATA
1 AAATTACTGAAATAC-CCTCGATTTG-TA
* * **
23938092 GAATTAC-CATTTTACCCTCGA-TTG-A
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** * *
23938117 CAGAATTACCGTTTTACCCTTGATTTATA
1 -A-AATTACTGAAATACCCTCGATTTGTA
* * ** **
23938146 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** **
23938173 GAATTA-TCGTCTTACCCTCGATTTACA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * ** **
23938200 GAATTAC-CATTTTACCCTCGATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTA
* * * **
23938227 AAATTATTGAAATACCCTTGGTTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
23938254 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* *
23938281 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
23938308 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
*
23938336 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
* *
23938364 AAATTAC-CAAAGTACCCTCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *** **
23938391 GAATTATTGTTGTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** * **
23938418 GAATTACT-ATTTTACCCTTGATTTAAA
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** * *
23938445 AAATTACCGTTTTACCCTC-AATTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * **
23938471 AAATTACTAAAATACCC-CTATAGGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
* ** * * *
23938498 GAATTACCAAAACACCC-CTAGTTTATA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** * *
23938525 AAATTACCAAAATACCGCT-GGTTTGTG
1 AAATTACTGAAATACC-CTCGATTTGTA
* * *
23938552 AAATTACTGAAATACCTTCAAATTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** **
23938579 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
23938606 AAATTACAGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * **
23938633 GATTTACCAAAATACCCT
1 AAATTACTGAAATACCCT
23938651 TGTAGGATGA
Statistics
Matches: 527, Mismatches: 132, Indels: 72
0.72 0.18 0.10
Matches are distributed among these distances:
25 2 0.00
26 28 0.05
27 418 0.79
28 76 0.14
29 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:23938153 original size:54 final size:54
Alignment explanation
Indices: 23938089--23938232 Score: 234
Period size: 54 Copynumber: 2.7 Consensus size: 54
23938079 CTCCTGTAAG
* * *
23938089 ATAGAATTACCATTTTACCCTCGATTGACAGAATTACCGTTTTACCCTTGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTT
*
23938143 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTT
* *
23938197 ACAGAATTACCATTTTACCCTCGATTTACAAAATTA
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTA
23938233 TTGAAATACC
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.38
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATTT
Found at i:23938243 original size:54 final size:54
Alignment explanation
Indices: 23938091--23938451 Score: 219
Period size: 54 Copynumber: 6.6 Consensus size: 54
23938081 CCTGTAAGAT
* * * *** * *
23938091 AGAATTACCATTTTACCCTCGATTGACAGAATTACCGTTTTACCCTTGATTTAT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTAC
* ***
23938145 AGAATTACCATTTTACCCTCGATTTACAGAATTA-TCGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACT-GAAATACCCTCGATTTAC
* * *
23938199 AGAATTACCATTTTACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTTAC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTAC
* *** * ** * * *
23938253 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTA-
1 AGAATTACCATTTTACCCTCGA-TTTACAAAATTACTGAAATA-CCCTCGATT-TAC
* *** * **
23938308 A-AATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACTTGTA-
1 AGAATTACCATTTTACCCTC-GATTTACAAAATTACTGAAATACCCTCGA-TT-TAC
* *** * * * ***
23938363 AAAATTACCAAAGTACCCTCGATTTATAGAATTATTGTTGTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTAC
* * *
23938417 AGAATTACTATTTTACCCTTGATTTAAAAAATTAC
1 AGAATTACCATTTTACCCTCGATTTACAAAATTAC
23938452 CGTTTTACCC
Statistics
Matches: 252, Mismatches: 45, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
53 4 0.02
54 172 0.68
55 58 0.23
56 18 0.07
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.35
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTAC
Found at i:23939479 original size:20 final size:21
Alignment explanation
Indices: 23939444--23939500 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
23939434 TGATACGTGG
23939444 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
23939462 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
23939483 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
23939501 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:23939578 original size:26 final size:26
Alignment explanation
Indices: 23939549--23939684 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
23939539 GAGGAAGTGC
23939549 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
23939575 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
23939601 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
23939627 GAAAGGACTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
23939652 AAAAGGGCTTA-GCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
23939675 AAAAGAGGCT
1 AAAAG-GGCT
23939685 AGGCCTCTAG
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 28 0.29
26 58 0.59
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:23939897 original size:42 final size:42
Alignment explanation
Indices: 23939817--23939908 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
23939807 TAGTCTCCCC
** *
23939817 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
* *
23939859 GAATGGGCTTGCATACA-TCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTC-ATTGACATTACATATGATATTG
23939901 AAATGGGC
1 AAATGGGC
23939909 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
Found at i:23939970 original size:31 final size:31
Alignment explanation
Indices: 23939932--23940039 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 31
23939922 TGTTTACAGT
*
23939932 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
23939963 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * *
23939994 AAAGGCTTCGGCCCAGT-AACT-ATTAAACG-
1 AAAGGCTTCGGCCCAGTGAAATGATT-TATGA
23940023 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
23940040 ATATGTCAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
29 20 0.29
30 4 0.06
31 46 0.66
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:23943673 original size:30 final size:30
Alignment explanation
Indices: 23943639--23943700 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
23943629 ATTCGGAAGT
*
23943639 TTTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
23943669 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
23943699 TT
1 TT
23943701 CGGCTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:23948985 original size:53 final size:53
Alignment explanation
Indices: 23948804--23949058 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
23948794 ATTAGGGTTT
* * * *
23948804 AAGGATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
23948859 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
23948914 AAAGG-TCCCATGTAAGACCATGCCAAGGCATAGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
23948967 AAGGATACCATGGAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
23949016 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
23949059 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 42 0.25
54 8 0.05
55 65 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:23949010 original size:108 final size:110
Alignment explanation
Indices: 23948814--23949011 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
23948804 AAGGATACCG
* * *
23948814 TGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGAAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATAGAAATTGGTAAGGTTTCTAAGGAAAGGAAACCATGGAAGACCA
*
23948879 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * * *
23948924 TGTAAGACCATGCCAAGGCATAG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGGAAGACC
1 TGTAAGACCATGCCAAGGCATAGAAATTGGTAAGGTTTC-TAAGGAAAGGAAACCATGGAAGACC
*
23948986 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
23949012 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.59
109 7 0.09
110 22 0.28
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATAGAAATTGGTAAGGTTTCTAAGGAAAGGAAACCATGGAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:23950998 original size:20 final size:19
Alignment explanation
Indices: 23950973--23951011 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23950963 CAATGAAAAA
*
23950973 TATATATCCCATTACAATTT
1 TATATA-CCCAATACAATTT
*
23950993 TATATACTCAATACAATTT
1 TATATACCCAATACAATTT
23951012 CAAAGCAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (19 bp):
TATATACCCAATACAATTT
Found at i:23963470 original size:12 final size:12
Alignment explanation
Indices: 23963453--23963512 Score: 68
Period size: 12 Copynumber: 5.0 Consensus size: 12
23963443 AGTTACACGA
23963453 CCTAGCACATGG
1 CCTAGCACATGG
*
23963465 CCTAGCACAGGG
1 CCTAGCACATGG
23963477 CCTAGCACACT-G
1 CCTAGCACA-TGG
* **
23963489 TCTAGCACACAG
1 CCTAGCACATGG
23963501 CCTAGCACATGG
1 CCTAGCACATGG
23963513 GAATGTGGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (12 bp):
CCTAGCACATGG
Found at i:23963485 original size:24 final size:24
Alignment explanation
Indices: 23963453--23963512 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
23963443 AGTTACACGA
**
23963453 CCTAGCACATGGCCTAGCACAGGG
1 CCTAGCACATGGCCTAGCACACAG
*
23963477 CCTAGCACACT-GTCTAGCACACAG
1 CCTAGCACA-TGGCCTAGCACACAG
23963501 CCTAGCACATGG
1 CCTAGCACATGG
23963513 GAATGTGGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 1 0.03
24 29 0.94
25 1 0.03
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (24 bp):
CCTAGCACATGGCCTAGCACACAG
Found at i:23965833 original size:93 final size:94
Alignment explanation
Indices: 23965679--23965849 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 94
23965669 AGGATACCAA
* * * * * *
23965679 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGTAAGGAAATCAGGTAAGACCATG
1 GTAAGACCATGCCAAGGCATGGCAATGGTAAGTTTCACAAGGCAAGGAAACCACGTAAGACCATA
23965744 TCAAGACATGGCATTGATAAACTACTCAT
66 TCAAGACATGGCATTGATAAACTACTCAT
* * *
23965773 GTAAGACCATGCCAAGGCATGGCAATGGTGAG-TTCATAAGGCAAGGATACCACGTAAGACCATA
1 GTAAGACCATGCCAAGGCATGGCAATGGTAAGTTTCACAAGGCAAGGAAACCACGTAAGACCATA
23965837 TCAAGACATGGCA
66 TCAAGACATGGCA
23965850 ATGGTAAGTT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 38 0.56
94 30 0.44
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (94 bp):
GTAAGACCATGCCAAGGCATGGCAATGGTAAGTTTCACAAGGCAAGGAAACCACGTAAGACCATA
TCAAGACATGGCATTGATAAACTACTCAT
Found at i:23969522 original size:16 final size:16
Alignment explanation
Indices: 23969503--23969533 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23969493 CTTCTTCACT
23969503 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
23969519 TACTTACTTACTTAA
1 TACTCACTTACTTAA
23969534 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:23969539 original size:20 final size:20
Alignment explanation
Indices: 23969500--23969539 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23969490 AAACTTCTTC
* *
23969500 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
23969520 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
23969540 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:23969854 original size:53 final size:54
Alignment explanation
Indices: 23969771--23969979 Score: 244
Period size: 55 Copynumber: 3.9 Consensus size: 54
23969761 TATCCTTTTC
* *
23969771 AAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
23969825 -AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
* * * * *
23969879 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
23969932 AAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 AAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
23969980 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 47 0.36
54 8 0.06
55 70 0.54
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:23981561 original size:28 final size:28
Alignment explanation
Indices: 23981527--23981626 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
23981517 CTGACTGATT
23981527 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * *
23981555 TCACACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
23981584 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
23981612 TCGCACACATAGTGC
1 TCGCACACATAGTGC
23981627 CTCAACTACT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.02
28 36 0.60
29 22 0.37
30 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:23981591 original size:29 final size:29
Alignment explanation
Indices: 23981527--23981655 Score: 115
Period size: 29 Copynumber: 4.5 Consensus size: 29
23981517 CTGACTGATT
* *
23981527 TCGCACACATAGTG-CTCGATTA-AAGAAC
1 TCGCACACATAGTGCCTCAATTACAA-ATC
* *
23981555 TCACACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
23981584 TCGCACACATAGTG-CTCGATTGA-AGAA-C
1 TCGCACACATAGTGCCTCAATT-ACA-AATC
* **
23981612 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
23981641 TGGCACACATAGTGC
1 TCGCACACATAGTGC
23981656 TCAGTTGAAG
Statistics
Matches: 82, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
28 36 0.44
29 45 0.55
30 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACAAATC
Found at i:23981664 original size:57 final size:57
Alignment explanation
Indices: 23981499--23981687 Score: 231
Period size: 57 Copynumber: 3.3 Consensus size: 57
23981489 GAAACACACT
* * *
23981499 TCGCATACACAGTGCC-C-ACTGACTGATTTCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGTGCTCGATTGAAGAAC
* * * **
23981555 TCACACACATAGTGCCTCAATTACCAATCTCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTGAAGAAC
* * *
23981612 TCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTC-AGTTGAAGAGC
1 TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGA-TTGAAGAAC
*
23981669 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
23981688 TAATTCCAGC
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.12
57 98 0.86
58 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCGATTGAAGAAC
Found at i:23981675 original size:28 final size:28
Alignment explanation
Indices: 23981527--23981683 Score: 115
Period size: 28 Copynumber: 5.5 Consensus size: 28
23981517 CTGACTGATT
*
23981527 TCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACATAGTGCTCAG-TTGAAGAAC
* * **
23981555 TCACACACATAGTGCCTCAATT-ACCAATC
1 TCGCACACATAGTG-CTCAGTTGAAGAA-C
23981584 TCGCACACATAGTGCTC-GATTGAAGAAC
1 TCGCACACATAGTGCTCAG-TTGAAGAAC
** * *
23981612 TCGCACACATAGTGCCTCAACT-ACTGATC
1 TCGCACACATAGTG-CTCAGTTGA-AGAAC
* *
23981641 TGGCACACATAGTGCTCAGTTGAAGAGC
1 TCGCACACATAGTGCTCAGTTGAAGAAC
* *
23981669 TTGCACACACAGTGC
1 TCGCACACATAGTGC
23981684 CTCATAATTC
Statistics
Matches: 101, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
28 58 0.57
29 43 0.43
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCAGTTGAAGAAC
Found at i:23981767 original size:40 final size:40
Alignment explanation
Indices: 23981693--23981809 Score: 157
Period size: 40 Copynumber: 3.0 Consensus size: 40
23981683 CCTCATAATT
* **
23981693 CCAGCACGAATGC-CTTCGAGG-TTTAGCCAAGATATATCA
1 CCAGCACGAATGCTCTTC-AGGACTTAGCCCGGATATATCA
* *
23981732 CTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATATCA
*
23981772 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAT
23981810 AACTCTCAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 15 0.22
40 53 0.78
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATATCA
Found at i:23997521 original size:40 final size:40
Alignment explanation
Indices: 23997437--23997620 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
23997427 TTGAATGCTG
* * * *
23997437 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
23997476 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
23997517 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
23997557 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
23997597 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23997621 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:23997574 original size:80 final size:81
Alignment explanation
Indices: 23997437--23997617 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
23997427 TTGAATGCTG
* * *
23997437 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
23997501 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
23997517 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
23997578 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
23997597 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
23997618 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:23997641 original size:39 final size:38
Alignment explanation
Indices: 23997518--23997667 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
23997508 GTTATTAATT
* ** * *
23997518 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
23997558 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
23997597 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
23997637 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
23997668 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:24003096 original size:35 final size:35
Alignment explanation
Indices: 24003054--24003172 Score: 98
Period size: 35 Copynumber: 3.2 Consensus size: 35
24003044 CCAACCATGA
24003054 TCTTACATCTAAAAACTGCCATAGCCTCGCTATGG
1 TCTTACATCTAAAAACTGCCATAGCCTCGCTATGG
* * * **
24003089 TCTTACATATATATATATACACTGCCATGGTCCAAC-C-ATAA
1 TCTTAC--ATCTA-A-A-A-ACTGCCATAG-CC-TCGCTATGG
*
24003130 TCTTACACCTAAAAACTGCCATAGCCTCGCTATGG
1 TCTTACATCTAAAAACTGCCATAGCCTCGCTATGG
24003165 TCTTACAT
1 TCTTACAT
24003173 AAACATTGCC
Statistics
Matches: 62, Mismatches: 12, Indels: 20
0.66 0.13 0.21
Matches are distributed among these distances:
33 1 0.02
34 3 0.05
35 24 0.39
36 1 0.02
37 5 0.08
38 2 0.03
39 4 0.06
40 1 0.02
41 17 0.27
42 3 0.05
43 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (35 bp):
TCTTACATCTAAAAACTGCCATAGCCTCGCTATGG
Found at i:24003133 original size:76 final size:76
Alignment explanation
Indices: 24003009--24003173 Score: 280
Period size: 76 Copynumber: 2.2 Consensus size: 76
24002999 CATAGCCCAA
* * *
24003009 CTATGGTCTTAC--ATATATATATACATTACCATGGTCCAACCATGATCTTACATCTAAAAACTG
1 CTATGGTCTTACATATATATATATACACTACCATGGTCCAACCATAATCTTACACCTAAAAACTG
24003072 CCATAGCCTCG
66 CCATAGCCTCG
*
24003083 CTATGGTCTTACATATATATATATACACTGCCATGGTCCAACCATAATCTTACACCTAAAAACTG
1 CTATGGTCTTACATATATATATATACACTACCATGGTCCAACCATAATCTTACACCTAAAAACTG
24003148 CCATAGCCTCG
66 CCATAGCCTCG
24003159 CTATGGTCTTACATA
1 CTATGGTCTTACATA
24003174 AACATTGCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
74 12 0.14
76 73 0.86
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (76 bp):
CTATGGTCTTACATATATATATATACACTACCATGGTCCAACCATAATCTTACACCTAAAAACTG
CCATAGCCTCG
Found at i:24003264 original size:69 final size:69
Alignment explanation
Indices: 24003140--24003272 Score: 167
Period size: 69 Copynumber: 1.9 Consensus size: 69
24003130 TCTTACACCT
* **
24003140 AAAAACTGCCATAGCCTCGCTATGGTCTTACATAAACATTGCCATGGTCCAACCATGGTCTTGTG
1 AAAAACTGCCATAGCCTCACTATGGTCTTACATAAACATTGCCAAAGTCCAACCATGGTCTTGTG
24003205 TCTG
66 TCTG
** * * * ***
24003209 AAAAACTGGTATAGCCTTACTATGGTTTTACGTAAACATTGCCAAAGTTTGACCATGGTCTTGT
1 AAAAACTGCCATAGCCTCACTATGGTCTTACATAAACATTGCCAAAGTCCAACCATGGTCTTGT
24003273 ACATCTTTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (69 bp):
AAAAACTGCCATAGCCTCACTATGGTCTTACATAAACATTGCCAAAGTCCAACCATGGTCTTGTG
TCTG
Found at i:24008003 original size:42 final size:43
Alignment explanation
Indices: 24007909--24008077 Score: 130
Period size: 42 Copynumber: 4.0 Consensus size: 43
24007899 TCATACAATG
* * * * *
24007909 CCAACGTCCCAGACGAGG-CTTACATGTAATCAAATATCGATG
1 CCAATGTCCCAGACAAGGTCTTACACGAAATCAAATATCGATA
* * *
24007951 CCACTATCCCAGACAAGGTCTTACACGAAATCATATA-CGATA
1 CCAATGTCCCAGACAAGGTCTTACACGAAATCAAATATCGATA
* * * *
24007993 CCAATGTCCCAGGCATGGTCTTACACGTAATTCTCAAAT-T-GATG
1 CCAATGTCCCAGACAAGGTCTTACACG-AA--ATCAAATATCGATA
* * * * *
24008037 CCAATGTGCCAGACATGGTCTTATAGGAAATCACATATCGA
1 CCAATGTCCCAGACAAGGTCTTACACGAAATCAAATATCGA
24008078 AATCCTGATA
Statistics
Matches: 99, Mismatches: 21, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
41 5 0.05
42 42 0.42
43 21 0.21
44 26 0.26
45 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
CCAATGTCCCAGACAAGGTCTTACACGAAATCAAATATCGATA
Found at i:24010626 original size:28 final size:28
Alignment explanation
Indices: 24010563--24010660 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
24010553 ATATTAAGTC
*
24010563 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24010590 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
24010618 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
24010647 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24010661 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24018913 original size:28 final size:28
Alignment explanation
Indices: 24018850--24018947 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
24018840 ATATTAAGTC
*
24018850 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24018877 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
24018905 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
24018934 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24018948 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24026433 original size:46 final size:46
Alignment explanation
Indices: 24026383--24026558 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
24026373 TGGTTGAGCA
24026383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24026429 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
24026474 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
24026522 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24026559 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:24026539 original size:93 final size:93
Alignment explanation
Indices: 24026380--24026551 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
24026370 GGATGGTTGA
*
24026380 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
24026445 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
24026473 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
24026537 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
24026552 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:24034106 original size:45 final size:46
Alignment explanation
Indices: 24033943--24034117 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
24033933 TGGTTGAGCA
*
24033943 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
24033989 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
24034034 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
24034082 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24034118 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:24034897 original size:17 final size:17
Alignment explanation
Indices: 24034875--24034908 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24034865 TAGTTTCACA
*
24034875 TGAAACAAATGATACAG
1 TGAAACAAATGAAACAG
24034892 TGAAACAAATGAAACAG
1 TGAAACAAATGAAACAG
24034909 GTAAAGGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.18, T:0.15
Consensus pattern (17 bp):
TGAAACAAATGAAACAG
Found at i:24038099 original size:13 final size:15
Alignment explanation
Indices: 24038081--24038113 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
24038071 ATATTTAAAA
24038081 TTTATTTT-T-TGAG
1 TTTATTTTGTGTGAG
24038094 TTTATTTTGTGTGAG
1 TTTATTTTGTGTGAG
24038109 TTTAT
1 TTTAT
24038114 ATCTGTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 1 0.06
15 9 0.50
ACGTcount: A:0.15, C:0.00, G:0.18, T:0.67
Consensus pattern (15 bp):
TTTATTTTGTGTGAG
Done.