Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 80 of 253
Found at i:24040983 original size:29 final size:30
Alignment explanation
Indices: 24040945--24041068 Score: 125
Period size: 29 Copynumber: 4.3 Consensus size: 30
24040935 ACCCCTACAT
*
24040945 ACATGCATATGGCCCATCTA-GCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
24040974 ACGTTCATATGGCCCATC-AGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
24041003 ACATTCATATGACCCAT-TAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* * ** * *
24041031 TCATTTATATCACCGAT-TAGGCCCAAATC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
24041060 ACATT-ATAT
1 ACATTCATAT
24041069 TCATGCTCAC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
28 29 0.35
29 54 0.65
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:24050058 original size:30 final size:29
Alignment explanation
Indices: 24050012--24050078 Score: 125
Period size: 30 Copynumber: 2.3 Consensus size: 29
24050002 CCTCAAGTAA
24050012 CCAAAGCTAGTTAAATCGCACACTTAGTG
1 CCAAAGCTAGTTAAATCGCACACTTAGTG
24050041 CCAAAGCTAGTTTAAATCGCACACTTAGTG
1 CCAAAGCTAG-TTAAATCGCACACTTAGTG
24050071 CCAAAGCT
1 CCAAAGCT
24050079 TTCGATTCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 10 0.27
30 27 0.73
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (29 bp):
CCAAAGCTAGTTAAATCGCACACTTAGTG
Found at i:24054902 original size:29 final size:28
Alignment explanation
Indices: 24054835--24054974 Score: 124
Period size: 29 Copynumber: 4.9 Consensus size: 28
24054825 TACATACATG
*
24054835 CATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
*
24054863 TATATGGCCCATCCA-GCCCAATTCACGTT
1 CATATGGCCCAT-CAGGCCCAATTCAC-TT
*
24054892 CATATGGCCCATCAGGCCCAATTCACAAT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
* * *
24054921 CATATGACCCATTAGACCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
* ** *
24054949 TATATGGCCCATTTGGCCCAAATCAC
1 CATATGGCCCATCAGGCCCAATTCAC
24054975 ATTATATTCA
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
27 6 0.07
28 38 0.41
29 45 0.49
30 3 0.03
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACTT
Found at i:24054954 original size:57 final size:56
Alignment explanation
Indices: 24054835--24054975 Score: 151
Period size: 57 Copynumber: 2.5 Consensus size: 56
24054825 TACATACATG
* * * *
24054835 CATATGGCCCATTAGGCCCAATCTCATTTATATGGCCCATCCAGCCCAATTCACGTT
1 CATATGGCCCATTAGGCCCAATCACAATCATATGACCCATCCAGCCCAATTCAC-TT
* *
24054892 CATATGGCCCATCAGGCCCAATTCACAATCATATGACCCAT-TAGACCCAATCTCA-TT
1 CATATGGCCCATTAGGCCCAA-TCACAATCATATGACCCATCCAG-CCCAAT-TCACTT
* *
24054949 TATATGGCCCATTTGGCCCAAATCACA
1 CATATGGCCCATTAGGCCC-AATCACA
24054976 TTATATTCAT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
57 45 0.63
58 23 0.32
59 3 0.04
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.26
Consensus pattern (56 bp):
CATATGGCCCATTAGGCCCAATCACAATCATATGACCCATCCAGCCCAATTCACTT
Found at i:24061076 original size:22 final size:22
Alignment explanation
Indices: 24060936--24061076 Score: 183
Period size: 22 Copynumber: 6.4 Consensus size: 22
24060926 CATCAATGTT
* *
24060936 ATCAGTGGCAGTTTATTTGCAA
1 ATCAGTGGTAGTTTATCTGCAA
* * *
24060958 ATCAATGGCAATTTATCTGCAA
1 ATCAGTGGTAGTTTATCTGCAA
* *
24060980 ATCAGTGGCAGTTTATCTACAA
1 ATCAGTGGTAGTTTATCTGCAA
24061002 ATCAGTGGTAGTTTATCTGCAA
1 ATCAGTGGTAGTTTATCTGCAA
* *
24061024 TTCAGTGGTAGTTTATCTACAA
1 ATCAGTGGTAGTTTATCTGCAA
* *
24061046 TTCAGTGGTAGTTTATCTGGAA
1 ATCAGTGGTAGTTTATCTGCAA
24061068 ATCAGTGGT
1 ATCAGTGGT
24061077 GGCATGACCA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 106 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (22 bp):
ATCAGTGGTAGTTTATCTGCAA
Found at i:24061090 original size:44 final size:44
Alignment explanation
Indices: 24060969--24061091 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
24060959 TCAATGGCAA
* * * * *
24060969 TTTATCTGCAAATCAGTGGCAGTTTATCTACAAATCAGTGGTAG
1 TTTATCTGCAAATCAGTGGTAGATGATCCACAATTCAGTGGTAG
* * * *
24061013 TTTATCTGCAATTCAGTGGTAGTTTATCTACAATTCAGTGGTAG
1 TTTATCTGCAAATCAGTGGTAGATGATCCACAATTCAGTGGTAG
* *
24061057 TTTATCTGGAAATCAGTGGTGGCATGA-CCACAATT
1 TTTATCTGCAAATCAGTGGTAG-ATGATCCACAATT
24061092 GGTGTTTGGA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 67 0.97
45 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (44 bp):
TTTATCTGCAAATCAGTGGTAGATGATCCACAATTCAGTGGTAG
Found at i:24063221 original size:12 final size:12
Alignment explanation
Indices: 24063204--24063229 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24063194 CATTCCAAAG
24063204 TATATATATACA
1 TATATATATACA
24063216 TATATATATACA
1 TATATATATACA
24063228 TA
1 TA
24063230 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:24063762 original size:27 final size:28
Alignment explanation
Indices: 24063676--24063770 Score: 120
Period size: 28 Copynumber: 3.4 Consensus size: 28
24063666 CATGAGATTG
* * * *
24063676 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAG-TTAGATTATATA
*
24063705 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
24063733 GCACTAAGTGTGCGAG-TAGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
*
24063760 GCACTGAGTGT
1 GCACTAAGTGT
24063771 ACGGACTTAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.34
28 24 0.41
29 15 0.25
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:24070587 original size:27 final size:27
Alignment explanation
Indices: 24070556--24070733 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24070546 TAAATTGTAC
24070556 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24070583 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24070609 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24070637 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24070665 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24070692 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24070719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24070734 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24070670 original size:82 final size:81
Alignment explanation
Indices: 24070557--24070712 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24070547 AAATTGTACA
* *
24070557 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24070621 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24070638 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24070703 TGCGAGTTGA
65 TGCGAATTGA
24070713 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24070724 original size:82 final size:81
Alignment explanation
Indices: 24070553--24070733 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24070543 GATTAAATTG
* *
24070553 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24070618 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24070634 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24070698 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24070716 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24070734 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24078566 original size:27 final size:27
Alignment explanation
Indices: 24078535--24078712 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24078525 TAAATTGTAC
24078535 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24078562 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24078588 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24078616 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24078644 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24078671 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24078698 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24078713 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24078649 original size:82 final size:81
Alignment explanation
Indices: 24078536--24078691 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24078526 AAATTGTACA
* *
24078536 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24078600 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24078617 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24078682 TGCGAGTTGA
65 TGCGAATTGA
24078692 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24078703 original size:82 final size:81
Alignment explanation
Indices: 24078532--24078712 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24078522 GATTAAATTG
* *
24078532 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24078597 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24078613 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24078677 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24078695 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24078713 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24080789 original size:47 final size:46
Alignment explanation
Indices: 24080711--24080939 Score: 155
Period size: 47 Copynumber: 4.8 Consensus size: 46
24080701 ATTGGGTTAT
* *
24080711 ATGAGAGCCAGTATAAGACCATGCCTGGGACATGGCATCGGCATTGA-G
1 ATGAG-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGATG
* * * *
24080759 ACGAGGGCTAGTGTAAGACGTGTCTGGGACATGCATCAGCCGCA-TCATG
1 ATGA-GGCCAGTGTAAGACATGTCTGGGACATGCATC-G--GCATTGATG
* * *
24080808 AT-A-GCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGA-G
1 ATGAGGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGATG
* *** * *
24080853 GTGAGTTATAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATG
1 ATGAG-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGATG
* *
24080900 ATGTTA-GCCAGTGTAAGACGTGTCTGGGAAATGCATCGGC
1 ATG--AGGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
24080940 TAAGTTTCGT
Statistics
Matches: 140, Mismatches: 27, Indels: 29
0.71 0.14 0.15
Matches are distributed among these distances:
45 5 0.04
46 28 0.20
47 71 0.51
48 29 0.21
49 7 0.05
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (46 bp):
ATGAGGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGATG
Found at i:24080885 original size:94 final size:95
Alignment explanation
Indices: 24080711--24081030 Score: 319
Period size: 94 Copynumber: 3.4 Consensus size: 95
24080701 ATTGGGTTAT
* * * * * *
24080711 ATGAGAGCCAGTATAAGACCATGCCTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAG
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAG
*
24080776 ACGTGTCTGGGACATGCATCAGCCGC-ATC
66 ACATGTCTGGGACATGCATCAGCCGCGATC
* * * **
24080805 ATGATAGCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCATAGAGGTGAGTTATAGTGTAAG
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAG
* * *
24080870 ACATGTCTGGGACATGCATCGGCCTCGATG
66 ACATGTCTGGGACATGCATCAGCCGCGATC
* * * * **
24080900 ATGTTAGCCAGTGTAAGA-CGTGTCTGGGAAAT-GCATCGGC-TA-AGTTTCGTGCTAGTGTAAG
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAG
* * * *
24080961 ACATGTTTGGGACATGCATCAGTACG-TATAT
66 ACATGTCTGGGACATGCATCAG-CCGCGAT-C
* ** *
24080992 ATGAGAGTTAGTGTAAGTCCATGTCTGGGACATGGCATC
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
24081031 AGCCTCAATA
Statistics
Matches: 183, Mismatches: 38, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
91 36 0.20
92 16 0.09
93 20 0.11
94 93 0.51
95 18 0.10
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (95 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAG
ACATGTCTGGGACATGCATCAGCCGCGATC
Found at i:24082860 original size:44 final size:44
Alignment explanation
Indices: 24082797--24082884 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
24082787 TAATGCGAAT
24082797 GTACAAGTATACACGTCGAAGCAAGTAATAAAGTGATGAGTGAG
1 GTACAAGTATACACGTCGAAGCAAGTAATAAAGTGATGAGTGAG
24082841 GTACAAGTATACACGTCGAAGCAAGTAATAAAGTGATGAGTGAG
1 GTACAAGTATACACGTCGAAGCAAGTAATAAAGTGATGAGTGAG
24082885 TATTGTCTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.20
Consensus pattern (44 bp):
GTACAAGTATACACGTCGAAGCAAGTAATAAAGTGATGAGTGAG
Found at i:24089042 original size:16 final size:17
Alignment explanation
Indices: 24089011--24089043 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24089001 TTCATAAGTA
24089011 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
*
24089028 TATATTAAT-ATTTCAT
1 TATATCAATCATTTCAT
24089044 GCTCCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:24089391 original size:46 final size:45
Alignment explanation
Indices: 24089339--24089618 Score: 344
Period size: 46 Copynumber: 6.1 Consensus size: 45
24089329 TGGCATAGTG
* * * *
24089339 TCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTA
*** * * **
24089385 TCTTTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTA
** * *
24089431 TCTTTCAACCATGGTCTTATTCATTCCCATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTA
* *
24089476 TATTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTA
24089522 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTA
* *
24089568 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTA
24089614 TCTTT
1 TCTTT
24089619 ATAAATAAAT
Statistics
Matches: 207, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
45 40 0.19
46 164 0.79
47 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTA
Found at i:24089586 original size:92 final size:91
Alignment explanation
Indices: 24089339--24089618 Score: 389
Period size: 92 Copynumber: 3.1 Consensus size: 91
24089329 TGGCATAGTG
* * * *
24089339 TCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAACCATGGTCTTG
1 TCTTTCAACCATGGTCTTACTCA-TTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * * * **
24089404 TTCATTTCATGTTACATTGCCATGGTA
65 CACATTTTATATCATGTTGCCATGGTA
* * * *
24089431 TCTTTCAACCATGGTCTTATTCATTCCCATCATGTTGCCATGGTATATTTCAACCATGGTCTTAC
1 TCTTTCAACCATGGTCTTACTCATTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
24089496 ACATTTTATATCATGTTGCCATGGTA
66 ACATTTTATATCATGTTGCCATGGTA
*
24089522 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTC-TATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
24089587 CACATTTTATATCCTGTTGCCATGGTA
65 CACATTTTATATCATGTTGCCATGGTA
24089614 TCTTT
1 TCTTT
24089619 ATAAATAAAT
Statistics
Matches: 166, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
91 79 0.48
92 87 0.52
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (91 bp):
TCTTTCAACCATGGTCTTACTCATTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
ACATTTTATATCATGTTGCCATGGTA
Found at i:24109692 original size:33 final size:33
Alignment explanation
Indices: 24109650--24109713 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
24109640 AGTTTATTCT
*
24109650 GGATTACCAGTCCAGGCTAAATCTAGTCAATTA
1 GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
24109683 GGATTACCAGTCCAGGCTAAATCCAGTCAAT
1 GGATTACCAGTCCAGGCTAAATCCAGTCAAT
24109714 CCTAATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (33 bp):
GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
Found at i:24115332 original size:27 final size:27
Alignment explanation
Indices: 24115302--24115479 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
24115292 ATATTGAGCC
* * * *
24115302 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24115329 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24115356 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
24115384 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24115411 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24115438 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24115465 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24115480 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24115441 original size:82 final size:81
Alignment explanation
Indices: 24115323--24115478 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
24115313 TGCTATATAA
* * * *
24115323 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
24115388 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24115405 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24115469 CACTTAGTGC
65 CACTTAGTGC
24115479 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24118547 original size:47 final size:47
Alignment explanation
Indices: 24118426--24118547 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
24118416 CCATTGGTAC
* * *
24118426 TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGGTATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTCGG
24118473 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTCGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTCGG
* *
24118520 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
24118548 CAAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTCGG
Found at i:24118590 original size:54 final size:54
Alignment explanation
Indices: 24118515--24118732 Score: 201
Period size: 54 Copynumber: 4.0 Consensus size: 54
24118505 GAACATGGCA
* * * *
24118515 TTCGGTAAGATAAGGATATCATGTAAGACCATG-CAAAGGCATGGCATTGATAAG
1 TTCGATAAGGTAAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGATAAG
* * *
24118569 TTCGATAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAAA
1 TTCGATAAGGTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGAT-AAG
* * * * * * *
24118624 TATTG-TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGTTGAG
1 T-TCGATAAGG-TAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAG
* * * * *
24118678 TTC-ATAAGTTAAGGATACCACGTAAGACTATGTCAAGACATGGCAATGGTAAG
1 TTCGATAAGGTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAG
24118731 TT
1 TT
24118733 TAAAAAGGAA
Statistics
Matches: 132, Mismatches: 26, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
52 4 0.03
53 37 0.28
54 47 0.36
55 38 0.29
56 6 0.05
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (54 bp):
TTCGATAAGGTAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAG
Found at i:24121655 original size:77 final size:80
Alignment explanation
Indices: 24121522--24121743 Score: 226
Period size: 77 Copynumber: 2.8 Consensus size: 80
24121512 TTGAATGATG
* * * * * * *
24121522 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGACATTTGTGC-GAGTTACTATAACCGGGCT-ATATCCCGAAGGCAT
*
24121584 TTGTGTGAGATACT-AA
64 TTGTGCGAGATACTAAA
* * *
24121600 TTCGGGCTAAG-CCCGAAGACATTT-TGTGAGTTACTA-AATCCGGGTTA-AGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAA-CCGGGCTATA-TCCCGAAGGCAT
*
24121661 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
24121678 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATATCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGGGCTATATCCCGAAGGCATTT
24121743 G
66 G
24121744 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 16, Indels: 18
0.78 0.11 0.12
Matches are distributed among these distances:
75 1 0.01
76 9 0.08
77 36 0.31
78 24 0.20
79 12 0.10
80 33 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAACCGGGCTATATCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:24121678 original size:40 final size:40
Alignment explanation
Indices: 24121522--24121743 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
24121512 TTGAATGATG
* * * *
24121522 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
24121562 T-CGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
24121600 TTCGGGCTAAG-CCCGAAGACATTT-TGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24121638 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24121678 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
24121719 -CCGGGCTATA-TCCCGAAGGCATTTG
1 TCCGGGCTA-AGTCCCGAAGGCATTTG
24121744 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
37 10 0.06
38 24 0.15
39 40 0.25
40 81 0.51
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24128865 original size:39 final size:40
Alignment explanation
Indices: 24128749--24128972 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
24128739 TTGAATGATG
* * * *
24128749 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
24128789 TCCGGACTAAGAT-CCGAAGGCATTAGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24128829 TCCGGGCTAAG-CCCGAAGACATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
24128868 TCTGGGTTAAGTTCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24128908 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24128949 -CC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24128973 AACGAGTAGC
Statistics
Matches: 154, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 51 0.33
40 94 0.61
41 9 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24128964 original size:79 final size:78
Alignment explanation
Indices: 24128749--24128972 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 78
24128739 TTGAATGATG
* * * *
24128749 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGG-CTAAG-TCCGAAGGCATT
* *
24128813 AGTGCGAGATACTAAT
63 TGTGCGAGATACTAAA
* * * *
24128829 TCCGGGCTAAG-CCCGAAGACATTTGTACGAGTTACTA-AATCTGGGTTAAGTTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C-CGGCTAAG-TCCGAAGGCATT
* *
24128892 TGTGTGAGTTACTAAA
63 TGTGCGAGATACTAAA
* *
24128908 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTAAGT-CCGAAGGCATTTG
24128973 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
78 2 0.02
79 71 0.60
80 44 0.37
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGCTAAGTCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:24128979 original size:39 final size:39
Alignment explanation
Indices: 24128802--24128995 Score: 187
Period size: 39 Copynumber: 4.9 Consensus size: 39
24128792 GGACTAAGAT
* * * * *
24128802 CCGAAGGCATTAGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTACGAGTTACTAAATCC-GGTTAAGTC
* * *
24128841 CCGAAGACATTTGTACGAGTTACTAAATCTGGGTTAAGTT
1 CCGAAGGCATTTGTACGAGTTACTAAATC-CGGTTAAGTC
**
24128881 CCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTACGAGTTACTAAATCC-GGTTAAGTC
* * *
24128921 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGCTATGTC
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGTTAAGTC
* *
24128960 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA
1 CCGAAGGCATTTGTACGAGTTA-CTAAATCCGGTTAA
24128996 ATTCTGAAGG
Statistics
Matches: 128, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
38 3 0.02
39 63 0.49
40 60 0.47
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGTTAAGTC
Found at i:24134155 original size:47 final size:47
Alignment explanation
Indices: 24134095--24134216 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
24134085 ACATTGGCAC
*
24134095 TAAGACAAGGATACCATGAAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
24134142 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATTGTATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
24134189 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
24134217 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:24134377 original size:53 final size:54
Alignment explanation
Indices: 24134195--24134402 Score: 186
Period size: 53 Copynumber: 3.9 Consensus size: 54
24134185 TTGGTAAGAT
* *
24134195 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * * * * **
24134249 GAGGAAATCATGTAAGATCATGTCAAGACAGGGAATTGATGAGTTACTATAATGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAA-GGC
* * * * *
24134305 AATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
24134357 AAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
24134403 AAAAAGGAAA
Statistics
Matches: 120, Mismatches: 31, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
52 4 0.03
53 38 0.32
54 38 0.32
55 37 0.31
56 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:24141021 original size:33 final size:33
Alignment explanation
Indices: 24140974--24141063 Score: 162
Period size: 33 Copynumber: 2.7 Consensus size: 33
24140964 AGTTTATTTT
24140974 GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
1 GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
* *
24141007 GGATTACCAATCCAGGTTAAATCCAGTCAATTA
1 GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
24141040 GGATTACCAGTCCAGGCTAAATCC
1 GGATTACCAGTCCAGGCTAAATCC
24141064 TAATTGAAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (33 bp):
GGATTACCAGTCCAGGCTAAATCCAGTCAATTA
Found at i:24149941 original size:47 final size:47
Alignment explanation
Indices: 24149890--24150064 Score: 160
Period size: 47 Copynumber: 3.7 Consensus size: 47
24149880 GGGGCCAATG
* * *
24149890 CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTATGCCGCTGC
1 CATGTCCCAGACATGGTCTTACACTAGCACTCAT-TGTATGCCGATGC
* * *
24149937 CATGTCCCAGACATGGTCTTACATTAGCTA-TCATAGTATGGCTGATG-
1 CATGTCCCAGACATGGTCTTACACTAGC-ACTCATTGTAT-GCCGATGC
* ** * **
24149984 CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTTTGGATATCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCAC-TCATTGTATGCCGATGC
* *
24150031 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 CATGTCCCAGACATGGTCTTACACTAGCACTCAT
24150065 AATGTGGCTG
Statistics
Matches: 102, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
46 16 0.16
47 52 0.51
48 33 0.32
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCACTCATTGTATGCCGATGC
Found at i:24149996 original size:94 final size:94
Alignment explanation
Indices: 24149745--24150082 Score: 251
Period size: 94 Copynumber: 3.6 Consensus size: 94
24149735 ATATATTGCT
* * * * *
24149745 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCAT-ATACGCGTGCTGATGCATGTCCTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATA--TG-GCTGATGCATGTCCCAG
* *
24149809 ACATGTCTTACACTAGCA--CAACTC-TTAGCC
63 ACATGTCTTACACTAGCACTCATCTCGATA-CC
** * * * * * * * **
24149839 GATG-TGTGTTCCAGGCA-CGTTTTACACTGGCTAT-AT-CTGTCGGGGCCAATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATAT---GGCTGATGCATGTCCCAG
* * *
24149900 ACATGTCTTACACTGGCACTCATCTCTATGCC
63 ACATGTCTTACACTAGCACTCATCTCGATACC
* * *
24149932 GCTGCCATGTCCCAGACATGGTCTTACATTAGCTATCATAGTATGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATATGGCTGATGCATGTCCCAGACA
* ** * * *
24149997 TGTCTTACACTAGCCCTTGTTTGGATATC
66 TGTCTTACACTAGCACTCATCTCGATACC
* * * *
24150026 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGAAGCATGT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATATGGCTGATGCATGT
24150083 TGTAACACCC
Statistics
Matches: 187, Mismatches: 47, Indels: 20
0.74 0.19 0.08
Matches are distributed among these distances:
91 34 0.18
92 15 0.08
93 18 0.10
94 103 0.55
95 13 0.07
96 2 0.01
97 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATAATATGGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCATCTCGATACC
Found at i:24150082 original size:47 final size:46
Alignment explanation
Indices: 24149887--24150082 Score: 139
Period size: 47 Copynumber: 4.2 Consensus size: 46
24149877 GTCGGGGCCA
* * * * * *
24149887 ATGCATGTCCCAGACATGTCTTACACTGGCACTCAT-CTCTATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGT-GGCTG
* * * * *
24149933 CTGCCATGTCCCAGACATGGTCTTACATTAGCTATCATAGTATGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCTG
** * *
24149981 ATGCATGTCCCAGACATGTCTTACACTAGC-C-C-TTGTTTGGATATCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGG--CT-G
*
24150027 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCTG
*
24150075 AAGCATGT
1 ATGCATGT
24150083 TGTAACACCC
Statistics
Matches: 118, Mismatches: 21, Indels: 21
0.74 0.13 0.13
Matches are distributed among these distances:
43 6 0.05
44 1 0.01
45 1 0.01
46 18 0.15
47 47 0.40
48 35 0.30
49 4 0.03
50 1 0.01
51 5 0.04
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCTG
Found at i:24150829 original size:31 final size:31
Alignment explanation
Indices: 24150788--24150851 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
24150778 CCTTTTCATA
* *
24150788 TTTCATATTTCATAAAACTGGGCTGAAGCCT
1 TTTCAAATTTCATAAAACTGGGCCGAAGCCT
**
24150819 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAAAACTGGGCCGAAGCCT
24150850 TT
1 TT
24150852 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAAAACTGGGCCGAAGCCT
Found at i:24151097 original size:24 final size:24
Alignment explanation
Indices: 24151045--24151210 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
24151035 GCTTTATCAT
*
24151045 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
24151070 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
24151094 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
24151117 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
24151141 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
24151165 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
24151188 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
24151211 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:24151121 original size:47 final size:48
Alignment explanation
Indices: 24151044--24151210 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
24151034 TGCTTTATCA
* *
24151044 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
24151093 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
24151140 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
24151187 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
24151211 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:24151145 original size:71 final size:71
Alignment explanation
Indices: 24151045--24151210 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
24151035 GCTTTATCAT
* *
24151045 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
24151109 GCCCTTTA
64 GCCCTTTA
* * *
24151117 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
24151182 CCTTTA
66 CCTTTA
24151188 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
24151211 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:24151285 original size:20 final size:20
Alignment explanation
Indices: 24151260--24151340 Score: 144
Period size: 20 Copynumber: 4.0 Consensus size: 20
24151250 TTATGAATAC
24151260 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24151280 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
24151300 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
24151320 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24151340 A
1 A
24151341 CCGTGTTTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:24151291 original size:11 final size:11
Alignment explanation
Indices: 24151260--24151335 Score: 65
Period size: 11 Copynumber: 7.5 Consensus size: 11
24151250 TTATGAATAC
24151260 ATCATGTGCAT
1 ATCATGTGCAT
*
24151271 ATCA--TACAT
1 ATCATGTGCAT
24151280 ATCATGTGCAT
1 ATCATGTGCAT
*
24151291 ATCA--TACAT
1 ATCATGTGCAT
*
24151300 GTCATGTGCAT
1 ATCATGTGCAT
*
24151311 ATCA--TACAT
1 ATCATGTGCAT
*
24151320 GTCATGTGCAT
1 ATCATGTGCAT
24151331 ATCAT
1 ATCAT
24151336 ACATACCGTG
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.45
11 27 0.55
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:24152422 original size:27 final size:27
Alignment explanation
Indices: 24152360--24152437 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
24152350 GGGCATATTC
24152360 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
24152387 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
24152414 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
24152438 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:24152498 original size:27 final size:27
Alignment explanation
Indices: 24152468--24152520 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
24152458 GGGTGTTTTG
24152468 GTAAATCTGCAAACCAAAGGTATTTCA
1 GTAAATCTGCAAACCAAAGGTATTTCA
* * * *
24152495 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTGCAAACCAAAGGTATTTC
24152521 CATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (27 bp):
GTAAATCTGCAAACCAAAGGTATTTCA
Found at i:24152526 original size:27 final size:27
Alignment explanation
Indices: 24152478--24152529 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
24152468 GTAAATCTGC
24152478 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
*
24152505 AAACCAATGGTATTTCCA-TAATTTT
1 AAACCAAAGGTATTT-CAGTAATTTT
24152530 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:24152581 original size:27 final size:26
Alignment explanation
Indices: 24152541--24152672 Score: 90
Period size: 27 Copynumber: 4.9 Consensus size: 26
24152531 AGAAAGTCAA
*
24152541 GGGTATTTCT-GTAACTTTGTAAATCAG
1 GGGTATTT-TGGTAA-TTTATAAATCAG
* *
24152568 GGGTATTTTGGTAATTTTACAAAT-TG
1 GGGTATTTTGGTAA-TTTATAAATCAG
** * *
24152594 AGGGTATTTCAGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTT-ATAAATCAG
* *
24152622 TGGTATTTTGGTAATTT-TACAAACTAG
1 GGGTATTTTGGTAATTTATA-AATC-AG
24152649 GGGTATTTTGGTAATTTTATAAAT
1 GGGTATTTTGGTAA-TTTATAAAT
24152673 TGAGGGTATT
Statistics
Matches: 82, Mismatches: 15, Indels: 15
0.73 0.13 0.13
Matches are distributed among these distances:
25 1 0.01
26 8 0.10
27 65 0.79
28 6 0.07
29 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTATAAATCAG
Found at i:24152661 original size:81 final size:81
Alignment explanation
Indices: 24152566--24152760 Score: 295
Period size: 81 Copynumber: 2.4 Consensus size: 81
24152556 TTTGTAAATC
* *
24152566 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-AGTAATTTCACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCTA-TAATTTCACAAACCAATGGTATTT
*
24152630 TGGTAATTTTACAAACT
65 TAGTAATTTTACAAACT
*
24152647 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCTATAATTTTACAAACCAATGGTATTTT
1 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCTATAATTTCACAAACCAATGGTATTTT
*
24152712 AGTAATTTTACAGACT
66 AGTAATTTTACAAACT
* * *
24152728 A-GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTA
24152761 AAACAGTAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
80 29 0.28
81 75 0.71
82 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCTATAATTTCACAAACCAATGGTATTTT
AGTAATTTTACAAACT
Found at i:24152679 original size:27 final size:27
Alignment explanation
Indices: 24152568--24152746 Score: 186
Period size: 27 Copynumber: 6.7 Consensus size: 27
24152558 TGTAAATCAG
* *
24152568 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTAGTAATTTTACAAACTGA
* * *
24152595 GGGTATTTCAGTAATTTCACAAAC-CA
1 GGGTATTTTAGTAATTTTACAAACTGA
*
24152621 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTAGTAATTTTACAAACTGA
* * *
24152648 GGGGTATTTTGGTAATTTTATAAATTGA
1 -GGGTATTTTAGTAATTTTACAAACTGA
**
24152676 GGGTATTTCTA-TAATTTTACAAACCAA
1 GGGTATTT-TAGTAATTTTACAAACTGA
* *
24152703 TGGTATTTTAGTAATTTTACAGACT-A
1 GGGTATTTTAGTAATTTTACAAACTGA
24152729 GGGTATTTTAGTAATTTT
1 GGGTATTTTAGTAATTTT
24152747 GTAAATCGAG
Statistics
Matches: 127, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
26 22 0.17
27 102 0.80
28 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTGA
Found at i:24152949 original size:27 final size:27
Alignment explanation
Indices: 24152739--24152942 Score: 264
Period size: 27 Copynumber: 7.6 Consensus size: 27
24152729 GGGTATTTTA
* * *
24152739 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
**
24152766 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
24152793 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
24152820 GTACTTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
24152847 ATAATTCTGTAAGTCAATGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
24152874 GTAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* **
24152901 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
24152928 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
24152943 GGGGGTACTT
Statistics
Matches: 158, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACG
Found at i:24152976 original size:54 final size:54
Alignment explanation
Indices: 24152739--24152976 Score: 233
Period size: 54 Copynumber: 4.4 Consensus size: 54
24152729 GGGTATTTTA
* *
24152739 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
* * * *
24152793 GTAATTCTATAAATCAAGGGTAAAACAGTACTTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
* * * * * * * * * *
24152847 ATAATTCTGTAAGTCAATGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
* * * * ** ***
24152901 GTAATTATGTAAATCGGGGGTAAAACGGTAATTCTGTAAATCGGGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
* *
24152955 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
24152977 TTTCAATAAT
Statistics
Matches: 153, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 153 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
Found at i:24154396 original size:30 final size:30
Alignment explanation
Indices: 24154355--24154412 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
24154345 AAATTTACAT
* *
24154355 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
*
24154385 CTTTGGCAAAATGACTATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
24154413 TGCCCAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:24155321 original size:27 final size:27
Alignment explanation
Indices: 24155236--24155381 Score: 118
Period size: 27 Copynumber: 5.4 Consensus size: 27
24155226 GGCTGTTACA
* * * *
24155236 GCCCTTGTGTGGTAAAATGACAATTTT
1 GCCCTTATATGGTAGAATGACTATTTT
* * *
24155263 TCCCTTATGTGGTAAAATGAC-ACTTTT
1 GCCCTTATATGGTAGAATGACTA-TTTT
* ** *
24155290 TCCCTTATATGGTAGAATGGTTGTTTT
1 GCCCTTATATGGTAGAATGACTATTTT
*
24155317 GCCCTTA-AGTGGTAGAATGACTATATT
1 GCCCTTATA-TGGTAGAATGACTATTTT
*
24155344 GCCCTTATATGCTCAG-ATGACTATTTT
1 GCCCTTATATGGT-AGAATGACTATTTT
*
24155371 GCCCCTATATG
1 GCCCTTATATG
24155382 ATGTATGTTT
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.02
27 94 0.95
28 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (27 bp):
GCCCTTATATGGTAGAATGACTATTTT
Found at i:24162941 original size:100 final size:100
Alignment explanation
Indices: 24162768--24162955 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
24162758 TATTGTGAGG
***
24162768 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAAATAATTGGTCGCATGTGTAGTACT
24162833 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* *
24162868 TCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAAATAATTGGTCGCATGTGTAGTACT
24162933 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
24162956 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAAATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:24162957 original size:49 final size:49
Alignment explanation
Indices: 24162773--24162960 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
24162763 TGAGGTCACG
* *
24162773 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* * * * *
24162822 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-T-TGGTCGCA
*** *
24162873 TGTGTAGTACTAAGTGCAGGCTACTACAAGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
24162922 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
24162961 GCTTCGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 76 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
Found at i:24165463 original size:28 final size:28
Alignment explanation
Indices: 24165400--24165497 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
24165390 ATATTAAGTC
*
24165400 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24165427 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
24165455 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
24165484 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24165498 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24173749 original size:28 final size:28
Alignment explanation
Indices: 24173686--24173783 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
24173676 ATATTAAGTC
*
24173686 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24173713 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
24173741 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
24173770 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24173784 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24176505 original size:27 final size:29
Alignment explanation
Indices: 24176460--24176519 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
24176450 TATTCAGTAT
*
24176460 CAGT-ATAGTCTGGGCCTT-AGCCCTATA
1 CAGTAATAGTCTGGGCCTTAAGCCCAATA
*
24176487 CAGTAATAGTGTGGG-CTTAAGCCCAATA
1 CAGTAATAGTCTGGGCCTTAAGCCCAATA
24176515 CAGTA
1 CAGTA
24176520 TCAGTACTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 7 0.24
28 22 0.76
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (29 bp):
CAGTAATAGTCTGGGCCTTAAGCCCAATA
Found at i:24176911 original size:27 final size:27
Alignment explanation
Indices: 24176881--24176991 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 27
24176871 ATCGTCTTTC
* *
24176881 TACCATATAGGGGTATTACAATCATTT
1 TACCCTATAGGGGTATTACGATCATTT
*
24176908 TACCCTATAGGGGTATTACGGTCATTT
1 TACCCTATAGGGGTATTACGATCATTT
* *
24176935 TACCCTATAGGGGTATTATGACCATTT
1 TACCCTATAGGGGTATTACGATCATTT
* * * *
24176962 TACCCTACAGGGATATTATGGTCATTT
1 TACCCTATAGGGGTATTACGATCATTT
24176989 TAC
1 TAC
24176992 AAATCAGGGG
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
TACCCTATAGGGGTATTACGATCATTT
Found at i:24176968 original size:54 final size:54
Alignment explanation
Indices: 24176881--24177005 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 54
24176871 ATCGTCTTTC
* * *
24176881 TACCATATAGGGGTATTACAATCATTTTACCCTATAGGGGTATTACGGTCATTT
1 TACCATATAGGGGTATTACAACCATTTTACCCTACAGGGATATTACGGTCATTT
* ** *
24176935 TACCCTATAGGGGTATTATGACCATTTTACCCTACAGGGATATTATGGTCATTT
1 TACCATATAGGGGTATTACAACCATTTTACCCTACAGGGATATTACGGTCATTT
*
24176989 TA-CAAATCAGGGGTATT
1 TACCATAT-AGGGGTATT
24177006 TTGGTAATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.05
54 58 0.95
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (54 bp):
TACCATATAGGGGTATTACAACCATTTTACCCTACAGGGATATTACGGTCATTT
Found at i:24176999 original size:27 final size:27
Alignment explanation
Indices: 24176969--24177074 Score: 83
Period size: 27 Copynumber: 3.9 Consensus size: 27
24176959 TTTTACCCTA
*
24176969 CAGGGATATTATGGTCATTTTACAAAT
1 CAGGGATATTATGGTAATTTTACAAAT
* *
24176996 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAGGGATATTATGGTAATTTTACAAAT
** * *
24177023 TGGGGGTATT-TCGGTAATTTCACAAAT
1 CAGGGATATTAT-GGTAATTTTACAAAT
* *
24177050 AAAGGG-TATT-TCAGTAATTTTACAA
1 -CAGGGATATTAT-GGTAATTTTACAA
24177075 CCTAGGAGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 63 0.94
28 3 0.04
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAGGGATATTATGGTAATTTTACAAAT
Found at i:24177048 original size:54 final size:54
Alignment explanation
Indices: 24176985--24177135 Score: 185
Period size: 54 Copynumber: 2.8 Consensus size: 54
24176975 TATTATGGTC
* * *
24176985 ATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATTGGGGGTATTTCGGTA
1 ATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAATTGGGGGTATTTCAGTA
* * * ** * *
24177039 ATTTCACAAATAAAGGGTATTTCAGTAATTTTACAACCTAGGAGTATTTCAGTA
1 ATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAATTGGGGGTATTTCAGTA
* * *
24177093 ATTTCACAAATCAGGGGTATTTTAATAATTTCACAAATCGGGG
1 ATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAATTGGGG
24177136 TCTTAACGAC
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (54 bp):
ATTTCACAAATCAGGGGTATTTTAGTAATTTTACAAATTGGGGGTATTTCAGTA
Found at i:24177112 original size:27 final size:27
Alignment explanation
Indices: 24176985--24177136 Score: 155
Period size: 27 Copynumber: 5.7 Consensus size: 27
24176975 TATTATGGTC
* **
24176985 ATTTTACAAATCAGGGGTATTTTGGTA
1 ATTTCACAAATCAGGGGTATTTCAGTA
* ** *
24177012 ATTTTACAAATTGGGGGTATTTCGGTA
1 ATTTCACAAATCAGGGGTATTTCAGTA
* *
24177039 ATTTCACAAATAAAGGGTATTTCAGTA
1 ATTTCACAAATCAGGGGTATTTCAGTA
* * *
24177066 ATTTTAC-AACCTAGGAGTATTTCAGTA
1 ATTTCACAAATC-AGGGGTATTTCAGTA
* *
24177093 ATTTCACAAATCAGGGGTATTTTAATA
1 ATTTCACAAATCAGGGGTATTTCAGTA
24177120 ATTTCACAAATC-GGGGT
1 ATTTCACAAATCAGGGGT
24177137 CTTAACGACC
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.07
27 95 0.90
28 3 0.03
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTCACAAATCAGGGGTATTTCAGTA
Found at i:24180272 original size:31 final size:31
Alignment explanation
Indices: 24180227--24180305 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
24180217 TTGCATTCAC
* *
24180227 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTATGATTCTGTCACCTGATACTG
* * *
24180258 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTATGATTCTGTCACCTGATACTG
*
24180289 ATTCTAATTATGATTCT
1 ATTCTGATTATGATTCT
24180306 AGTTCTGATA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTATGATTCTGTCACCTGATACTG
Found at i:24181511 original size:27 final size:27
Alignment explanation
Indices: 24181472--24181590 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
24181462 TGGATAAGTT
24181472 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
24181499 ATAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
24181526 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
24181553 GTAGAATTACCGAGATACCCCTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
24181580 GTAAAATTACC
1 GTAGAATTACC
24181591 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:24182286 original size:27 final size:26
Alignment explanation
Indices: 24182242--24182293 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
24182232 CTCGCTGCAA
24182242 TCTGGTAACCTCGCCACATATATCTGT
1 TCTGGTAACCTCGCCACA-ATATCTGT
* * *
24182269 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTAACCTCGCCACAATATCTG
24182294 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTGGTAACCTCGCCACAATATCTGT
Found at i:24183049 original size:18 final size:18
Alignment explanation
Indices: 24183028--24183080 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
24183018 CAATCACTTA
24183028 AACCAGCGAATGCATACT
1 AACCAGCGAATGCATACT
24183046 AACCA-C-AAT-C--ACTT
1 AACCAGCGAATGCATAC-T
24183060 AAACCAGCGAATGCATACT
1 -AACCAGCGAATGCATACT
24183079 AA
1 AA
24183081 GTCGTAAGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
13 2 0.07
14 1 0.04
15 6 0.21
16 4 0.14
17 4 0.14
18 8 0.29
19 1 0.04
20 2 0.07
ACGTcount: A:0.43, C:0.28, G:0.11, T:0.17
Consensus pattern (18 bp):
AACCAGCGAATGCATACT
Found at i:24183056 original size:33 final size:33
Alignment explanation
Indices: 24183018--24183080 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
24183008 AAGACCACCC
24183018 CAATCACTTAAACCAGCGAATGCATACTAACCA
1 CAATCACTTAAACCAGCGAATGCATACTAACCA
24183051 CAATCACTTAAACCAGCGAATGCATACTAA
1 CAATCACTTAAACCAGCGAATGCATACTAA
24183081 GTCGTAAGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.19
Consensus pattern (33 bp):
CAATCACTTAAACCAGCGAATGCATACTAACCA
Found at i:24189280 original size:34 final size:36
Alignment explanation
Indices: 24189226--24189295 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
24189216 GGTGTTTTTT
*
24189226 TTTAAATGACCAAAATTGGTAT-G-TGTTAATGTATC
1 TTTAAATGACCAAAAATGGTATGGTTGTT-ATGTATC
*
24189261 TTTAAATG-GCAAAAATGGTATGGTTGTTATGTATC
1 TTTAAATGACCAAAAATGGTATGGTTGTTATGTATC
24189296 AATTATGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 11 0.35
35 16 0.52
36 4 0.13
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (36 bp):
TTTAAATGACCAAAAATGGTATGGTTGTTATGTATC
Found at i:24192516 original size:27 final size:27
Alignment explanation
Indices: 24192485--24192662 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24192475 TAAATTGTAC
24192485 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24192512 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24192538 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24192566 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24192594 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24192621 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24192648 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24192663 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24192599 original size:82 final size:81
Alignment explanation
Indices: 24192486--24192641 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24192476 AAATTGTACA
* *
24192486 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24192550 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24192567 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24192632 TGCGAGTTGA
65 TGCGAATTGA
24192642 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24192653 original size:82 final size:81
Alignment explanation
Indices: 24192482--24192662 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24192472 GATTAAATTG
* *
24192482 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24192547 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24192563 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24192627 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24192645 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24192663 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24203943 original size:27 final size:27
Alignment explanation
Indices: 24203874--24203953 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
24203864 CTCAAATTGA
** *
24203874 TAAAATGACTATTTTAACCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
24203901 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
24203928 TGAGATGACTCA-TTTGCCCTTATGTG
1 TAAAATGACT-ATTTTGCCCTTATGTG
24203954 AGGTATTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:24206804 original size:47 final size:47
Alignment explanation
Indices: 24206741--24207384 Score: 920
Period size: 47 Copynumber: 13.5 Consensus size: 47
24206731 CCCTTCGGGA
* * * *
24206741 CTTATCACATTTATACACTTCCACATCCATCACATTGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24206788 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24206835 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24206882 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24206929 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24206976 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24207023 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
24207070 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207119 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207166 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207215 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207262 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207311 CTTATCACATATATATACACTTTAACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24207360 CTTATCACATATATACACTTTCACA
1 CTTATCACATATATACACTTTCACA
24207385 GTTATTCAAA
Statistics
Matches: 564, Mismatches: 25, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 378 0.67
49 184 0.33
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:24207148 original size:96 final size:94
Alignment explanation
Indices: 24206741--24207384 Score: 920
Period size: 96 Copynumber: 6.8 Consensus size: 94
24206731 CCCTTCGGGA
* * * *
24206741 CTTATCACATTTATACACTTCCACATCCATCACATTGGCTATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
24206806 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
* * * *
24206835 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
24206899 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
24206929 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
24206993 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
* *
24207023 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATA
24207087 CACTTTCACATTCATCACATTGGCCATTCGGC
63 CACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207119 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
24207184 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207215 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* *
24207280 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
24207311 CTTATCACATATATATACACTTTAACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
24207376 ACTTTCACA
64 ACTTTCACA
24207385 GTTATTCAAA
Statistics
Matches: 516, Mismatches: 26, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
93 2 0.00
94 222 0.43
96 245 0.47
97 2 0.00
98 45 0.09
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGC
Found at i:24208911 original size:56 final size:56
Alignment explanation
Indices: 24208844--24208963 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
24208834 TATTAGTTTA
24208844 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
24208900 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
24208956 TTGCCCAT
1 TTGCCCAT
24208964 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:24217762 original size:27 final size:26
Alignment explanation
Indices: 24217732--24217782 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
24217722 CTAACAGAAC
*
24217732 ATACTTATTGTATATTTTTTCATTATT
1 ATACATATT-TATATTTTTTCATTATT
* *
24217759 ATACATATTTTTATTTTTTTATTA
1 ATACATATTTATATTTTTTCATTA
24217783 ACCCGCATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (26 bp):
ATACATATTTATATTTTTTCATTATT
Found at i:24219954 original size:49 final size:47
Alignment explanation
Indices: 24219686--24220091 Score: 625
Period size: 47 Copynumber: 8.6 Consensus size: 47
24219676 CCCTTCGGGA
* * * * * *
24219686 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24219732 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24219780 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24219827 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24219874 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24219921 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24219970 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24220019 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24220066 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
24220092 CACAATTATC
Statistics
Matches: 339, Mismatches: 17, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 241 0.71
48 2 0.01
49 94 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24223348 original size:5 final size:5
Alignment explanation
Indices: 24223338--24223369 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
24223328 GTAGATGAAG
24223338 AGAAA AGAAA AGAAA AGAAA AGAAGA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAA-A AGAAA A
24223370 AATTGAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:24223356 original size:15 final size:16
Alignment explanation
Indices: 24223314--24223369 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
24223304 TATGGGGGAA
*
24223314 AAGAAGAAGAG-AAAG
1 AAGAAGAAAAGAAAAG
* * *
24223329 TAGATGAAGAGAAAAG
1 AAGAAGAAAAGAAAAG
24223345 AA-AAGAAAAGAAAAG
1 AAGAAGAAAAGAAAAG
24223360 AAGAAGAAAA
1 AAGAAGAAAA
24223370 AATTGAATCC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 22 0.65
16 12 0.35
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.04
Consensus pattern (16 bp):
AAGAAGAAAAGAAAAG
Found at i:24224224 original size:15 final size:15
Alignment explanation
Indices: 24224187--24224215 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24224177 ATTTCCTATC
24224187 TAATAATAATAATTA
1 TAATAATAATAATTA
24224202 TAATAATAATAATT
1 TAATAATAATAATT
24224216 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:24227984 original size:5 final size:5
Alignment explanation
Indices: 24227974--24228003 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
24227964 AGATGAAGAT
24227974 AAAAG AAAAG AAAAG AAAAG AAGAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AA-AAG AAAA
24228004 AACTAAATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:24229010 original size:25 final size:26
Alignment explanation
Indices: 24228957--24229016 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
24228947 AATAATAATT
*
24228957 ATAATAATAATTTTATAAATATATCTA
1 ATAATAA-AAATTTATAAATATATCTA
* * *
24228984 ATCATAAAAATTTA-AAATATCTGTA
1 ATAATAAAAATTTATAAATATATCTA
24229009 ATAATAAA
1 ATAATAAA
24229017 TACAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 16 0.57
26 6 0.21
27 6 0.21
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (26 bp):
ATAATAAAAATTTATAAATATATCTA
Found at i:24236907 original size:39 final size:40
Alignment explanation
Indices: 24236886--24237029 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
24236876 ACTACTTGCT
*
24236886 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
24236926 CAAATGCTTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
24236966 CAAATGCCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
24237005 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
24237030 TTATCATCCA
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.35
40 59 0.63
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:24239141 original size:40 final size:40
Alignment explanation
Indices: 24239097--24239318 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
24239087 GCTCCTCGTT
* *
24239097 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
24239137 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
24239177 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
24239215 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
24239253 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
24239294 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24239319 CATCATTCAA
Statistics
Matches: 162, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
37 23 0.14
38 27 0.17
39 20 0.12
40 80 0.49
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:24239278 original size:116 final size:118
Alignment explanation
Indices: 24239099--24239318 Score: 297
Period size: 116 Copynumber: 1.9 Consensus size: 118
24239089 TCCTCGTTCA
*
24239099 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
24239164 TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGATTAGTATCTCGCAC
* * **
24239216 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
24239278 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
24239319 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
115 4 0.04
116 55 0.61
117 31 0.34
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCAC
Found at i:24248017 original size:39 final size:39
Alignment explanation
Indices: 24247894--24248060 Score: 157
Period size: 39 Copynumber: 4.3 Consensus size: 39
24247884 AGCACTAGCT
*
24247894 CAAATGCCTTCGGGCACTTAGCCCGG--TTATGTAACTTGCGA
1 CAAATGCCTTCGGG-ACTTAG-CCGGAATTA-GTAACTCGC-A
* *
24247935 CAAATGCCTTC-GGA-TTAGCCTGGTA-TAATAACTC-CA
1 CAAATGCCTTCGGGACTTAGCC-GGAATTAGTAACTCGCA
* * *
24247971 TACAATGCCTTCGGGACTTAGCCGGAAGTAGTAGCTCGCA
1 CA-AATGCCTTCGGGACTTAGCCGGAATTAGTAACTCGCA
* *
24248011 CAAATGCCTTCGGGACTTAGCTCGAAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGC-CGGAATTAGTAACTCGCA
24248051 CAAATGCCTT
1 CAAATGCCTT
24248061 TGGAACTTTT
Statistics
Matches: 108, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
36 2 0.02
37 12 0.11
38 17 0.16
39 35 0.32
40 31 0.29
41 11 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGAATTAGTAACTCGCA
Found at i:24248054 original size:40 final size:39
Alignment explanation
Indices: 24247974--24248060 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 39
24247964 AACTCCATAC
*
24247974 AATGCCTTCGGGACTTAGCCGGAAGTAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCGAAAGTAGTAGCTCGCACA
*
24248013 AATGCCTTCGGGACTTAGCTCGAAATTAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGC-CGAAAGTAGTAGCTCGCACA
24248053 AATGCCTT
1 AATGCCTT
24248061 TGGAACTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 19 0.42
40 26 0.58
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCGAAAGTAGTAGCTCGCACA
Found at i:24252171 original size:20 final size:20
Alignment explanation
Indices: 24252080--24252163 Score: 123
Period size: 20 Copynumber: 4.2 Consensus size: 20
24252070 TAGTGGCTCG
* * *
24252080 AAGCCATCAGTAGCGACACA
1 AAGCCATTAATAGCGGCACA
24252100 AAGCCATTAATAGCGGCACA
1 AAGCCATTAATAGCGGCACA
24252120 AAGCCATTAATAGCGGCACA
1 AAGCCATTAATAGCGGCACA
* *
24252140 AAGCCATCAATAGTGGCACA
1 AAGCCATTAATAGCGGCACA
24252160 AAGC
1 AAGC
24252164 TATAAATATC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.40, C:0.26, G:0.20, T:0.13
Consensus pattern (20 bp):
AAGCCATTAATAGCGGCACA
Found at i:24254255 original size:40 final size:39
Alignment explanation
Indices: 24254156--24254337 Score: 197
Period size: 39 Copynumber: 4.6 Consensus size: 39
24254146 TAGTGGCTAA
* *
24254156 TCCGGGCTAAGTTCCAAAGGCATTTGT-CGAGCTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT-AT
* * *
24254195 TTCGAGCTAAGTCCCG-AGGCATTTGTTGCGAGCTACTCT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGCTACTAT
* * * *
24254234 TCCGGGCTAAGTTCCGAAGGCATTTGTGTGAGTTATTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAT
* * * *
24254273 ACCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAT
*
24254312 AACCGGGCTAAGTCCCGAAGGCATTT
1 -TCCGGGCTAAGTCCCGAAGGCATTT
24254338 TGAGCTAGTG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 9 0.08
39 69 0.57
40 42 0.35
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAT
Found at i:24254362 original size:40 final size:40
Alignment explanation
Indices: 24254235--24254353 Score: 123
Period size: 39 Copynumber: 3.0 Consensus size: 40
24254225 AGCTACTCTT
* * ** * *
24254235 CCGGGCTAAGTTCCGAAGGCATTTGTGTGAGTTATTAT-A
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTGACTATAA
* * *
24254274 CCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTGACTATAA
* *
24254314 CCGGGCTAAGTCCCGAAGGCATTTTGAGCTAGTGGCTATA
1 CCGGGCTAAGTCCCGAAGGCA-TTTGAGCAAGTGACTATA
24254354 TCTGGCTAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.49
40 21 0.31
41 14 0.21
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTGACTATAA
Found at i:24265185 original size:40 final size:39
Alignment explanation
Indices: 24265055--24265271 Score: 250
Period size: 39 Copynumber: 5.6 Consensus size: 39
24265045 CGGATGATAA
* * **
24265055 CCGGGCTAAGT-CCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACT-ATT
24265094 CCGGGCTAAGT-CC-AAGGCATTTGTGCGAG-TACTATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
*
24265130 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTACTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
24265169 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
* * *
24265208 CCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
24265248 CCGGGCT-AGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24265272 AGCTAGTGGC
Statistics
Matches: 158, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
35 10 0.06
36 5 0.03
37 18 0.11
38 16 0.10
39 69 0.44
40 40 0.25
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:24265226 original size:79 final size:76
Alignment explanation
Indices: 24265091--24265271 Score: 242
Period size: 79 Copynumber: 2.4 Consensus size: 76
24265081 CTAGTGGCTA
* *
24265091 ATTCCGGGCTAAGT-CC-AAGGCATTTGTGCGAGTACTATTCGGGCTAAGTCCCGAAGGCATTTG
1 ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATCCAGGCTAAGTCCCGAAGGCATTTG
*
24265154 TGCGAGCTACT
66 TGCAAGCTACT
* *
24265165 ACTTCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTATACCAGGCTAAGTCCCGAAGGCAT
1 A-TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAT-CCAGGCTAAGTCCCGAAGGCAT
*
24265230 TTGTGCAAGTTACT
63 TTGTGCAAGCTACT
*
24265244 ATAACCGGGCT-AGTCCCGAAGGCATTTG
1 AT-TCCGGGCTAAGTCCCGAAGGCATTTG
24265272 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
74 1 0.01
75 13 0.14
76 2 0.02
77 15 0.16
78 23 0.24
79 40 0.43
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (76 bp):
ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATCCAGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACT
Found at i:24273121 original size:40 final size:39
Alignment explanation
Indices: 24273066--24273289 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
24273056 CGGATGATAA
* * *
24273066 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAATT
24273106 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* * *
24273146 CCAGGCTAAGTCCCGAAGGCATTTGGGCGAGCAACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* *
24273186 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* *
24273225 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-T
*
24273265 CCGGGCTAAGTCCCGAAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24273290 AGCTAGTGGC
Statistics
Matches: 166, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 38 0.23
40 125 0.75
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATT
Found at i:24273278 original size:119 final size:120
Alignment explanation
Indices: 24273066--24273289 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
24273056 CGGATGATAA
* * *
24273066 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTTG
* * *
24273131 TGCGAGCTACTAATTCCAGGCTAAGTCCCGAAGGCATTTGGGCGAGCAACTAATT
66 TGCAAGCTACTAATACCAGGCTAAGTCCCGAAAGCATTTGGGCGAGCAACTAATT
* * *
24273186 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTT
* *
24273249 GTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAAGCATTTG
65 GTGCAAGCTACTAAT-ACCAGGCTAAGTCCCGAAAGCATTTG
24273290 AGCTAGTGGC
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
118 2 0.02
119 61 0.67
120 28 0.31
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTAATACCAGGCTAAGTCCCGAAAGCATTTGGGCGAGCAACTAATT
Found at i:24273311 original size:79 final size:79
Alignment explanation
Indices: 24273069--24273312 Score: 246
Period size: 79 Copynumber: 3.1 Consensus size: 79
24273059 ATGATAACCG
* * *** *
24273069 GGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAG-GCATTTGGGCAAGCAACTAATACCGGGCTAAGTCCCGAAGGCATTTGTG
24273133 CGAGCTACTA-ATTCCA
65 CGAG-TACTATA-TCCA
* *
24273149 GGCTAAGTCCCGAAGGCATTTGGGCGAGCAACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGGGCAAGCAACTAATACCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
24273214 GAGTTATTATA-CCG
66 GAG-TACTATATCCA
* ** * *
24273228 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAAGCATTTGAG
1 GGCTAAGTCCCGAAGGCATTTGGGCAAGCAACTAAT-ACCGGGCTAAGTCCCGAAGGCATTTGTG
* *
24273292 CTAGTGGCTATATCC-
65 CGAGT-ACTATATCCA
24273307 GGCTAA
1 GGCTAA
24273313 ACTCCGAAGG
Statistics
Matches: 141, Mismatches: 18, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.02
79 69 0.49
80 66 0.47
81 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGGGCAAGCAACTAATACCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTACTATATCCA
Found at i:24275461 original size:20 final size:20
Alignment explanation
Indices: 24275438--24275569 Score: 210
Period size: 20 Copynumber: 6.6 Consensus size: 20
24275428 TAGCGGCTTG
*
24275438 AAGCCATCAATAGCGGCACA
1 AAGCCATCAATAGTGGCACA
24275458 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
* *
24275478 AAGCCATCAATAGTGTCACG
1 AAGCCATCAATAGTGGCACA
24275498 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
*
24275518 AAGCCATCAATAGTGGTACA
1 AAGCCATCAATAGTGGCACA
*
24275538 AAGCCATCAATAGCGGCACA
1 AAGCCATCAATAGTGGCACA
*
24275558 AAGCCATAAATA
1 AAGCCATCAATA
24275570 TTGCAGCAAT
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 103 1.00
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.15
Consensus pattern (20 bp):
AAGCCATCAATAGTGGCACA
Found at i:24275482 original size:40 final size:40
Alignment explanation
Indices: 24275411--24275569 Score: 210
Period size: 40 Copynumber: 4.0 Consensus size: 40
24275401 TATCAGTATA
* * * ***
24275411 TGGCACAAAGCCATGAGTAGCGGCTTGAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
*
24275451 CGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
* *
24275491 TGTCACGAAGCCATCAATAGTGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
* * *
24275531 TGGTACAAAGCCATCAATAGCGGCACAAAGCCATAAATA
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATA
24275570 TTGCAGCAAT
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (40 bp):
TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
Found at i:24275504 original size:60 final size:60
Alignment explanation
Indices: 24275411--24275569 Score: 228
Period size: 60 Copynumber: 2.6 Consensus size: 60
24275401 TATCAGTATA
* * **
24275411 TGGCACAAAGCCATGAGTAGCGGCTTGAAGCCATCAATAGCGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGCGGCACGAAGCCATCAATAGCGGCACAAAGCCATCAATAG
* * *
24275471 TGGCACAAAGCCATCAATAGTGTCACGAAGCCATCAATAGTGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGCGGCACGAAGCCATCAATAGCGGCACAAAGCCATCAATAG
* * *
24275531 TGGTACAAAGCCATCAATAGCGGCACAAAGCCATAAATA
1 TGGCACAAAGCCATCAATAGCGGCACGAAGCCATCAATA
24275570 TTGCAGCAAT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 87 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (60 bp):
TGGCACAAAGCCATCAATAGCGGCACGAAGCCATCAATAGCGGCACAAAGCCATCAATAG
Found at i:24283880 original size:42 final size:43
Alignment explanation
Indices: 24283779--24283916 Score: 113
Period size: 43 Copynumber: 3.2 Consensus size: 43
24283769 TGAGATATTG
* * * * *
24283779 TGTAAGACCGTGTCTGGGACACAGGCCTC-A-ATTGATATTTACT
1 TGTAAGACCATATCTGGGACAGAGGCATCGATATTGA-A-TTACA
* * ** * *
24283822 TATAAGACCATGTCTGGGACATCGGCATCG-TATGTG-ATTTCG
1 TGTAAGACCATATCTGGGACAGAGGCATCGATAT-TGAATTACA
*
24283864 TGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATATCTGGGACAGAGGCATCGATATTGAATTACA
24283907 TGTAAGACCA
1 TGTAAGACCA
24283917 CGTCAGGAAT
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
42 30 0.40
43 41 0.55
44 2 0.03
45 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGAGGCATCGATATTGAATTACA
Found at i:24291454 original size:27 final size:27
Alignment explanation
Indices: 24291406--24291485 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
24291396 GGGAGGCTGC
* *
24291406 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGATA
* *
24291433 CAGATATTGTGGCTAGGCCACCAGA-A
1 CAGATATTGTGGCGAAGCCACCAGATA
* *
24291459 TATATATATGTGGCGAAGCCACCAGAT
1 CAGATAT-TGTGGCGAAGCCACCAGAT
24291486 TGCAGCGAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
26 6 0.14
27 37 0.86
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGGCGAAGCCACCAGATA
Found at i:24292235 original size:27 final size:27
Alignment explanation
Indices: 24292205--24292404 Score: 256
Period size: 27 Copynumber: 7.4 Consensus size: 27
24292195 GGGGAAAAAT
* * * *
24292205 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
24292232 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
24292259 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
24292286 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
24292313 GGTAATTCTACCCTACCGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
24292340 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
24292367 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
24292394 GGTAATTCTAC
1 GGTAATTCTAC
24292405 AACTTATCCA
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:24292271 original size:54 final size:54
Alignment explanation
Indices: 24292205--24292404 Score: 283
Period size: 54 Copynumber: 3.7 Consensus size: 54
24292195 GGGGAAAAAT
* * * *
24292205 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
24292259 AGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** **
24292313 GGTAATTCTACCCTACCGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
24292367 GGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
24292405 AACTTATCCA
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 128 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:24292340 original size:81 final size:81
Alignment explanation
Indices: 24292224--24292404 Score: 301
Period size: 81 Copynumber: 2.2 Consensus size: 81
24292214 ACCCCACAAA
* * *
24292224 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGGT
24292289 AATTCTATCC-TACAGG
66 AATTCTA-CCTTACAGG
* *
24292305 GGTATTTCGGTAATTCTACCCTACCGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGGT
24292370 AATTCTACCTTACAGG
66 AATTCTACCTTACAGG
24292386 GGTATTTCGGTAATTCTAC
1 GGTATTTCGGTAATTCTAC
24292405 AACTTATCCA
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
80 2 0.02
81 92 0.98
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGGT
AATTCTACCTTACAGG
Found at i:24299261 original size:29 final size:27
Alignment explanation
Indices: 24299243--24299312 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
24299233 ATATTAAGTC
24299243 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
24299270 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
24299298 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
24299313 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:24299306 original size:28 final size:28
Alignment explanation
Indices: 24299243--24299337 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
24299233 ATATTAAGTC
*
24299243 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24299270 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
24299298 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
24299327 CGCACACTTAG
1 CGCACACTTAG
24299338 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24302519 original size:24 final size:24
Alignment explanation
Indices: 24302487--24302538 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
24302477 CTCGTCAAAA
24302487 TGATTACCTTATTAACCATCAGTT
1 TGATTACCTTATTAACCATCAGTT
24302511 TGATTACCTTATTAACCATCAGTT
1 TGATTACCTTATTAACCATCAGTT
24302535 TGAT
1 TGAT
24302539 ATTAAATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (24 bp):
TGATTACCTTATTAACCATCAGTT
Found at i:24302938 original size:28 final size:28
Alignment explanation
Indices: 24302906--24303004 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 28
24302896 ACAGTGCATG
* *
24302906 CAGTAACAGTCTGGGCCTGAGCCTTATT
1 CAGTAACAGTCTGGGCCTGAGCCCTATA
*
24302934 CAGTATCAGTACAGTCTGGGCCTTAGCCCTATA
1 CAG--T-A--ACAGTCTGGGCCTGAGCCCTATA
* * * *
24302967 CAGTAACAGTGTAGGCCTAAGCCCAATA
1 CAGTAACAGTCTGGGCCTGAGCCCTATA
*
24302995 CAGTATCAGT
1 CAGTAACAGT
24303005 ATCGTGTAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
28 31 0.53
30 2 0.03
31 2 0.03
33 23 0.40
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATA
Found at i:24302949 original size:33 final size:34
Alignment explanation
Indices: 24302906--24302976 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
24302896 ACAGTGCATG
* * *
24302906 CAGTAACAGTCTGGGCCTGAGCCTTATTCAGTAT
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
*
24302940 CAGT-ACAGTCTGGGCCTTAGCCCTATACAGTAA
1 CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
24302973 CAGT
1 CAGT
24302977 GTAGGCCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 29 0.88
34 4 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTGAGCCCTATACAGTAA
Found at i:24303374 original size:27 final size:27
Alignment explanation
Indices: 24303354--24303524 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
24303344 GGGCATAATC
*
24303354 ATCATTTTACCATACAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
*
24303381 GTCATTTTACCCTACAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
*
24303408 ATCATTTTACCCTACAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
* *
24303435 GTCATTTTA-CCTACAGGGGTATTAC-
1 ATCATTTTACCCTACAGGGGCATTACG
*
24303460 AGTCATTTTACCCTACAGGGGTATTACG
1 A-TCATTTTACCCTACAGGGGCATTACG
* *
24303488 GTCATTTTACCCTACAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
*
24303515 GTCATTTTAC
1 ATCATTTTAC
24303525 AAACTGAAGA
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
26 24 0.18
27 110 0.82
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
ATCATTTTACCCTACAGGGGCATTACG
Found at i:24303412 original size:54 final size:54
Alignment explanation
Indices: 24303354--24303524 Score: 283
Period size: 54 Copynumber: 3.2 Consensus size: 54
24303344 GGGCATAATC
* * *
24303354 ATCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
24303408 ATCATTTTACCCTACAGGGGTATTACGGTCATTTTA-CCTACAGGGGTATTAC-
1 ATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
24303460 AGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
1 A-TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
*
24303515 GTCATTTTAC
1 ATCATTTTAC
24303525 AAACTGAAGA
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
52 1 0.01
53 50 0.45
54 59 0.54
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (54 bp):
ATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACG
Found at i:24303493 original size:80 final size:81
Alignment explanation
Indices: 24303355--24303524 Score: 297
Period size: 80 Copynumber: 2.1 Consensus size: 81
24303345 GGCATAATCA
*
24303355 TCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCC
1 TCATTTTACCATACAGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCC
24303420 TACAGGGGTATTACGG
66 TACAGGGGTATTACGG
* * *
24303436 TCATTTTACC-TACAGGGGTATTACAGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCC
1 TCATTTTACCATACAGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCC
24303500 TACAGGGGTATTACGG
66 TACAGGGGTATTACGG
24303516 TCATTTTAC
1 TCATTTTAC
24303525 AAACTGAAGA
Statistics
Matches: 85, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
80 75 0.88
81 10 0.12
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (81 bp):
TCATTTTACCATACAGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCC
TACAGGGGTATTACGG
Found at i:24303566 original size:27 final size:27
Alignment explanation
Indices: 24303422--24303667 Score: 196
Period size: 27 Copynumber: 9.2 Consensus size: 27
24303412 TTTTACCCTA
* * **
24303422 CAGGGGTATTACGGTCATTTTACCTA-
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * * **
24303448 CAGGGGTATTACAGTCATTTTAC-CCT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * **
24303474 ACAGGGGTATTACGGTCATTTTAC-CCT
1 -CAGGGGTATTTCGGTAATTTTACAAAT
* *
24303501 ACAGGGGTATTACGGTCATTTTACAAA-
1 -CAGGGGTATTTCGGTAATTTTACAAAT
* * ** * *
24303528 CTGAAGAAATTTCGATTATTTTACAAAT
1 CAG-GGGTATTTCGGTAATTTTACAAAT
*
24303556 CAGGGGTATTTCGGTAATTTCACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* *
24303583 CAGGGGTATTTTGGTAATTTTAC-AAC
1 CAGGGGTATTTCGGTAATTTTACAAAT
*
24303609 CTGGGGTATTTCGGTAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
*
24303636 CAGGGGTATTTCGATAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
24303663 CAGGG
1 CAGGG
24303668 TCTTAATGAC
Statistics
Matches: 186, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
26 47 0.25
27 137 0.74
28 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAAAT
Found at i:24303624 original size:26 final size:26
Alignment explanation
Indices: 24303583--24303660 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
24303573 TTTCACAAAT
*
24303583 CAGGGGTATTTTGGTAATTTTACAAC
1 CAGGGGTATTTCGGTAATTTTACAAC
* *
24303609 CTGGGGTATTTCGGTAATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTAC-AAC
*
24303636 CAGGGGTATTTCGATAATTTTACAA
1 CAGGGGTATTTCGGTAATTTTACAA
24303661 ATCAGGGTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 23 0.50
27 23 0.50
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (26 bp):
CAGGGGTATTTCGGTAATTTTACAAC
Found at i:24303624 original size:53 final size:53
Alignment explanation
Indices: 24303536--24303660 Score: 187
Period size: 53 Copynumber: 2.3 Consensus size: 53
24303526 AACTGAAGAA
* * *
24303536 ATTTCGATTATTTTACAAATCAGGGGTATTTCGGTAATTTCACAAATCAGGGGT
1 ATTTCGATAATTTTAC-AACCTGGGGTATTTCGGTAATTTCACAAATCAGGGGT
* * *
24303590 ATTTTGGTAATTTTACAACCTGGGGTATTTCGGTAATTTTACAAATCAGGGGT
1 ATTTCGATAATTTTACAACCTGGGGTATTTCGGTAATTTCACAAATCAGGGGT
24303643 ATTTCGATAATTTTACAA
1 ATTTCGATAATTTTACAA
24303661 ATCAGGGTCT
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 50 0.79
54 13 0.21
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (53 bp):
ATTTCGATAATTTTACAACCTGGGGTATTTCGGTAATTTCACAAATCAGGGGT
Found at i:24323603 original size:40 final size:40
Alignment explanation
Indices: 24323508--24323764 Score: 301
Period size: 40 Copynumber: 6.5 Consensus size: 40
24323498 TGGATGATAA
*
24323508 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGC-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-CAT
24323549 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
24323589 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTAC-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
24323628 CCGGGATAGGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
24323668 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * *
24323708 CTGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
24323747 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24323765 TACTTGGCTT
Statistics
Matches: 191, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.08
39 48 0.25
40 100 0.52
41 24 0.13
42 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:24323654 original size:79 final size:80
Alignment explanation
Indices: 24323508--24323764 Score: 290
Period size: 79 Copynumber: 3.2 Consensus size: 80
24323498 TGGATGATAA
* * *
24323508 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGCTCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTAGCTCCGGGATAAGTCCCAAAGGCATT
24323572 TGTGCGAGTTACTACAT
64 TGTGCGAGTTACTACAT
* * *
24323589 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTA-CTCCGGGATAGGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGCTCCGGGATAAGTCCCAAAGGCATTTG
*
24323653 TGCGAGTTACTATAT
66 TGCGAGTTACTACAT
* ** * * * *
24323668 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCTGGGCTATGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGCTCCGGGATAAGTCCCAAAGGCATTTG
* *
24323732 AGCGAG-TAGCTATAT
66 TGCGAGTTA-CTACAT
* *
24323747 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24323765 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 16 0.10
79 88 0.57
80 24 0.15
81 24 0.15
82 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGCTCCGGGATAAGTCCCAAAGGCATTTG
TGCGAGTTACTACAT
Found at i:24323750 original size:119 final size:119
Alignment explanation
Indices: 24323508--24323730 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
24323498 TGGATGATAA
* * * *
24323508 CCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGCTCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGATAAGTCCCAAAGGCATTTTGCGC-AGTGACTAGATCCGGGCTAAGTCCCGAAGGCATTG
24323573 GTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACT
65 GTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACT
* * *
24323628 CCGGGATAGGTCCCAAAGGCATTTGTGCG-AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGATAAGTCCCAAAGGCATTT-TGCGCAGTGACTAGATCCGGGCTAAGTCCCGAAGGCATTG
* * *
24323692 GTGCGAGTTACTATATCTGGGCTATGTCCCGAAGGCATT
65 GTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATT
24323731 GAGCGAGTAG
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
119 67 0.73
120 21 0.23
121 4 0.04
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGATAAGTCCCAAAGGCATTTTGCGCAGTGACTAGATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACT
Found at i:24325278 original size:495 final size:495
Alignment explanation
Indices: 24324348--24325342 Score: 1981
Period size: 495 Copynumber: 2.0 Consensus size: 495
24324338 AAGAGGTATG
24324348 GAAATGTTTGGGAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATATATGC
1 GAAATGTTTGGGAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATATATGC
24324413 TGAAGGGCTAGTTGAATCATGGAAACTATGTAATAGGTAAAGTCTACCTTAAAAATAGATGCTGA
66 TGAAGGGCTAGTTGAATCATGGAAACTATGTAATAGGTAAAGTCTACCTTAAAAATAGATGCTGA
*
24324478 TAGTAGCAGTGATGTGAATGTGAAAAATCACTAAAAATAGTAGGAATAGAATTAAATAATGAATA
131 TAGTAGCAGTGATGTGAATATGAAAAATCACTAAAAATAGTAGGAATAGAATTAAATAATGAATA
24324543 AATTATGTAATCGAACCTTGATGAATCTATTTTCATAGTAAAGTAACGAAACTATCATATGAACA
196 AATTATGTAATCGAACCTTGATGAATCTATTTTCATAGTAAAGTAACGAAACTATCATATGAACA
24324608 GTATATTATGAGATATTTAAGTTTTCGTGAAACAGGACCAGAACGGTTTCTGGATTCCCTGTTCC
261 GTATATTATGAGATATTTAAGTTTTCGTGAAACAGGACCAGAACGGTTTCTGGATTCCCTGTTCC
24324673 GACTTTGAAAATTCATTATAAATTAACCGGAGATAATTAGAAGTCATGCCATATATGTATAGATT
326 GACTTTGAAAATTCATTATAAATTAACCGGAGATAATTAGAAGTCATGCCATATATGTATAGATT
24324738 CCTTTTCAAGACTAGTTTCTATAGAAACAAACGGCACCAGTATTGAAGCCCTGTACAGGGAGATA
391 CCTTTTCAAGACTAGTTTCTATAGAAACAAACGGCACCAGTATTGAAGCCCTGTACAGGGAGATA
24324803 TCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGAACCCT
456 TCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGAACCCT
24324843 GAAATGTTTGGGAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATATATGC
1 GAAATGTTTGGGAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATATATGC
24324908 TGAAGGGCTAGTTGAATCATGGAAACTATGTAATAGGTAAAGTCTACCTTAAAAATAGATGCTGA
66 TGAAGGGCTAGTTGAATCATGGAAACTATGTAATAGGTAAAGTCTACCTTAAAAATAGATGCTGA
24324973 TAGTAGCAGTGATGTGAATATGAAAAATCACTAAAAATAGTAGGAATAGAATTAAATAATGAATA
131 TAGTAGCAGTGATGTGAATATGAAAAATCACTAAAAATAGTAGGAATAGAATTAAATAATGAATA
24325038 AATTATGTAATCGAACCTTGATGAATCTATTTTCATAGTAAAGTAACGAAACTATCATATGAACA
196 AATTATGTAATCGAACCTTGATGAATCTATTTTCATAGTAAAGTAACGAAACTATCATATGAACA
24325103 GTATATTATGAGATATTTAAGTTTTCGTGAAACAGGACCAGAACGGTTTCTGGATTCCCTGTTCC
261 GTATATTATGAGATATTTAAGTTTTCGTGAAACAGGACCAGAACGGTTTCTGGATTCCCTGTTCC
24325168 GACTTTGAAAATTCATTATAAATTAACCGGAGATAATTAGAAGTCATGCCATATATGTATAGATT
326 GACTTTGAAAATTCATTATAAATTAACCGGAGATAATTAGAAGTCATGCCATATATGTATAGATT
24325233 CCTTTTCAAGACTAGTTTCTATAGAAACAAACGGCACCAGTATTGAAGCCCTGTACAGGGAGATA
391 CCTTTTCAAGACTAGTTTCTATAGAAACAAACGGCACCAGTATTGAAGCCCTGTACAGGGAGATA
24325298 TCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGAACCCT
456 TCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGAACCCT
24325338 GAAAT
1 GAAAT
24325343 AGGGGAGACT
Statistics
Matches: 499, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
495 499 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (495 bp):
GAAATGTTTGGGAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATATATGC
TGAAGGGCTAGTTGAATCATGGAAACTATGTAATAGGTAAAGTCTACCTTAAAAATAGATGCTGA
TAGTAGCAGTGATGTGAATATGAAAAATCACTAAAAATAGTAGGAATAGAATTAAATAATGAATA
AATTATGTAATCGAACCTTGATGAATCTATTTTCATAGTAAAGTAACGAAACTATCATATGAACA
GTATATTATGAGATATTTAAGTTTTCGTGAAACAGGACCAGAACGGTTTCTGGATTCCCTGTTCC
GACTTTGAAAATTCATTATAAATTAACCGGAGATAATTAGAAGTCATGCCATATATGTATAGATT
CCTTTTCAAGACTAGTTTCTATAGAAACAAACGGCACCAGTATTGAAGCCCTGTACAGGGAGATA
TCCAAGTCGTAATGCGCAAAGGTCAGTGTAGTCGAACCCT
Found at i:24326763 original size:40 final size:40
Alignment explanation
Indices: 24326718--24326802 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
24326708 CCAGTGTTGG
24326718 AAATGATCGTCGAGAGAGAACGGAGTGCCAGTATTGTGGT
1 AAATGATCGTCGAGAGAGAACGGAGTGCCAGTATTGTGGT
24326758 AAATGATCGTCGAGAGAGAACGGAGTGCCAGTATTGTGGT
1 AAATGATCGTCGAGAGAGAACGGAGTGCCAGTATTGTGGT
24326798 AAATG
1 AAATG
24326803 GCATTCGGGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.32, C:0.12, G:0.34, T:0.22
Consensus pattern (40 bp):
AAATGATCGTCGAGAGAGAACGGAGTGCCAGTATTGTGGT
Found at i:24327095 original size:111 final size:117
Alignment explanation
Indices: 24326895--24327124 Score: 391
Period size: 111 Copynumber: 2.0 Consensus size: 117
24326885 TTGTCTGAAC
*
24326895 AGAATGTAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTTGAGGTAGACCATCTAGAAATACG
1 AGAATGTAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTAGAAATACG
*
24326960 GGCAATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGCTACGACCAGATCTG
66 GGCAATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGCAACGACCAGATCTG
*
24327012 AGAATGTAAATCAGAGT-GGAAACC-GGTGCTA-CACTGCTCGA-TTAGACCATCTAG-AATAC-
1 AGAATGTAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTAGAAATACG
24327071 GGCAATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGCAACGACCAGATCTG
66 GGCAATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGCAACGACCAGATCTG
24327123 AG
1 AG
24327125 GCTCGGCTCT
Statistics
Matches: 110, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
111 53 0.48
112 5 0.05
113 12 0.11
114 9 0.08
115 7 0.06
116 7 0.06
117 17 0.15
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (117 bp):
AGAATGTAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTAGAAATACG
GGCAATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGCAACGACCAGATCTG
Done.