Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 81 of 253
Found at i:24333855 original size:28 final size:28
Alignment explanation
Indices: 24333790--24333913 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
24333780 GAGATTGGCG
* * * *
24333790 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
24333819 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
24333847 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
24333875 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
24333903 CTGAGTGTGCG
1 CTAAGTGTGCG
24333914 GACTTAATAT
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 74 0.83
29 15 0.17
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:24341717 original size:28 final size:28
Alignment explanation
Indices: 24341652--24341803 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
24341642 GAGATTGGCG
* * * *
24341652 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
24341681 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
24341709 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
24341737 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
24341765 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
24341793 CTGAGTGTGCG
1 CTAAGTGTGCG
24341804 GACTTAATAT
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 102 0.87
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:24343394 original size:40 final size:40
Alignment explanation
Indices: 24343348--24343507 Score: 216
Period size: 40 Copynumber: 4.0 Consensus size: 40
24343338 GGGTGTTACA
* * * *
24343348 GGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACATTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
24343388 GGCTAAGTCCCGAAGGCATTTGTGCGATTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
24343428 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
24343468 GGCTATGTCCCGAGGGCA-TTGAGCGAG-TAGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
24343507 G
1 G
24343508 TTAAATCCCA
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.02
39 17 0.16
40 89 0.82
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:24349216 original size:20 final size:20
Alignment explanation
Indices: 24349175--24349216 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
24349165 ACCCCTGCAG
* *
24349175 TTTGAAAATTTTCTTCTTTT
1 TTTGAAAATTTTCTTATGTT
24349195 TTTGAAAA-TTTCTATATGTT
1 TTTGAAAATTTTCT-TATGTT
24349215 TT
1 TT
24349217 CAGTTTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTGAAAATTTTCTTATGTT
Found at i:24352091 original size:27 final size:27
Alignment explanation
Indices: 24352014--24352093 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
24352004 CTCAAATTGA
* *
24352014 TAAAATAACTATTTTACCCTTATATGG
1 TAAAATGACTATTTTACCCTTATGTGG
24352041 TAAAATGACTATTTTACCCTTATGTGG
1 TAAAATGACTATTTTACCCTTATGTGG
* *
24352068 TGAGATGACTCATTTT-CCCTTATGTG
1 TAAAATGACT-ATTTTACCCTTATGTG
24352094 AGGTATTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 43 0.90
28 5 0.10
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (27 bp):
TAAAATGACTATTTTACCCTTATGTGG
Found at i:24353007 original size:21 final size:21
Alignment explanation
Indices: 24352983--24353032 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
24352973 TAGCATTTTG
*
24352983 CTAAACGACTTGAGTTTTAAA
1 CTAAACAACTTGAGTTTTAAA
24353004 CTAAACAACTTGAGTTTTAAA
1 CTAAACAACTTGAGTTTTAAA
24353025 CTAAACAA
1 CTAAACAA
24353033 ACCTCTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (21 bp):
CTAAACAACTTGAGTTTTAAA
Found at i:24355524 original size:21 final size:20
Alignment explanation
Indices: 24355500--24355539 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24355490 CCGTGTTGAT
24355500 TTCGTACTTTGGCCAATTTTC
1 TTCGT-CTTTGGCCAATTTTC
* *
24355521 TTCGTTTTTGGCCCATTTT
1 TTCGTCTTTGGCCAATTTT
24355540 TCATTCCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.10, C:0.23, G:0.15, T:0.53
Consensus pattern (20 bp):
TTCGTCTTTGGCCAATTTTC
Found at i:24357854 original size:27 final size:27
Alignment explanation
Indices: 24357817--24358021 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
24357807 TAAATTGTAC
*
24357817 AGCACTAAGTGTGCGATTTGCCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
24357844 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24357871 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24357897 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24357925 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24357953 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24357980 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24358007 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24358022 GACTCAATAT
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 132 0.85
28 23 0.15
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24358012 original size:109 final size:108
Alignment explanation
Indices: 24357818--24358021 Score: 311
Period size: 109 Copynumber: 1.9 Consensus size: 108
24357808 AAATTGTACA
* * *
24357818 GCACTAAGTGTGCGATTTGCCTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
24357883 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
*
24357926 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
24357991 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
24358022 GACTCAATAT
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
108 17 0.20
109 69 0.80
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:24392059 original size:27 final size:27
Alignment explanation
Indices: 24392029--24392202 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
24392019 TGAGTCCGCT
* * * *
24392029 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
24392056 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
24392083 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
24392111 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
24392138 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
24392165 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
24392192 CACTTAGTGCT
1 CACTTAGTGCT
24392203 GTACAATTTA
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:24392171 original size:82 final size:81
Alignment explanation
Indices: 24392046--24392201 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24392036 TGCTATATAA
* *
24392046 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24392111 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24392128 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24392192 CACTTAGTGC
65 CACTTAGTGC
24392202 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24394363 original size:21 final size:22
Alignment explanation
Indices: 24394323--24394363 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
24394313 GGTGTCTGAT
24394323 TAAATAAAAAGACTTAATCGCA
1 TAAATAAAAAGACTTAATCGCA
* *
24394345 TAAATTAAAA-ACTTGATCG
1 TAAATAAAAAGACTTAATCG
24394364 TTTAAAGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (22 bp):
TAAATAAAAAGACTTAATCGCA
Found at i:24394369 original size:21 final size:22
Alignment explanation
Indices: 24394322--24394369 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
24394312 AGGTGTCTGA
24394322 TTAAATAAAAAGACTTAATCGC
1 TTAAATAAAAAGACTTAATCGC
* * * *
24394344 ATAAATTAAAA-ACTTGATCGT
1 TTAAATAAAAAGACTTAATCGC
24394365 TTAAA
1 TTAAA
24394370 GCATGAGGGC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.31
Consensus pattern (22 bp):
TTAAATAAAAAGACTTAATCGC
Found at i:24396866 original size:32 final size:32
Alignment explanation
Indices: 24396825--24396888 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
24396815 TATTGATTAA
24396825 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
1 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
24396857 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
1 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
24396889 GGCATATGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.09, G:0.22, T:0.50
Consensus pattern (32 bp):
ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
Found at i:24406698 original size:32 final size:32
Alignment explanation
Indices: 24406657--24406720 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
24406647 TATTGATTAA
24406657 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
1 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
24406689 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
1 ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
24406721 GGCATATGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.09, G:0.22, T:0.50
Consensus pattern (32 bp):
ACAATGTGTTTTGTTTCGTTAAGTATGGCTTT
Found at i:24412402 original size:16 final size:17
Alignment explanation
Indices: 24412381--24412419 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
24412371 GTTGTAACGC
24412381 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
24412397 CCCAAAAATCTCGAAAT
1 CCCAAAAATCCCGAAAT
24412414 CCCAAA
1 CCCAAA
24412420 CTTTTTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:24413832 original size:19 final size:19
Alignment explanation
Indices: 24413800--24413846 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
24413790 ACTTGGGTTG
* *
24413800 AGAATTGGCCAAATAGGCC
1 AGAATGGGCTAAATAGGCC
*
24413819 AGAATGGGCTAAATGGGCC
1 AGAATGGGCTAAATAGGCC
*
24413838 TG-ATGGGCT
1 AGAATGGGCT
24413847 GTTGGGCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.30, C:0.17, G:0.34, T:0.19
Consensus pattern (19 bp):
AGAATGGGCTAAATAGGCC
Found at i:24413984 original size:29 final size:29
Alignment explanation
Indices: 24413930--24414033 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
24413920 ACATGATTTG
* **
24413930 GGCCTAATGGGCCATATGAAGGTGAATTA
1 GGCCTAGTGGGCCATATGAATATGAATTA
* * *
24413959 GGCCTAGTGGGCCATAAGAATATGAACTG
1 GGCCTAGTGGGCCATATGAATATGAATTA
* * *
24413988 GGCC-AGATGGGCCATTTGAATAAG-ATTC
1 GGCCTAG-TGGGCCATATGAATATGAATTA
*
24414016 GGCCTAGTGGGCTATATG
1 GGCCTAGTGGGCCATATG
24414034 CATGTATGCA
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
28 17 0.28
29 43 0.72
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCCTAGTGGGCCATATGAATATGAATTA
Found at i:24416781 original size:20 final size:20
Alignment explanation
Indices: 24416758--24416869 Score: 170
Period size: 20 Copynumber: 5.6 Consensus size: 20
24416748 TAGCGACTTG
* *
24416758 AAGCCATCAGTAGCGACACA
1 AAGCCATCAATAGCGGCACA
*
24416778 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGCGGCACA
*
24416798 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGCGGCACA
*
24416818 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGCGGCACA
24416838 AAGCCATCAATAGCGGCACA
1 AAGCCATCAATAGCGGCACA
*
24416858 AAGCCATAAATA
1 AAGCCATCAATA
24416870 TCGCAGCAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 87 1.00
ACGTcount: A:0.42, C:0.26, G:0.19, T:0.13
Consensus pattern (20 bp):
AAGCCATCAATAGCGGCACA
Found at i:24416802 original size:40 final size:40
Alignment explanation
Indices: 24416758--24416869 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
24416748 TAGCGACTTG
* *
24416758 AAGCCATCAGTAGCGACACAAAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
*
24416798 AAGCCATCAATAGTGGCACAAAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
*
24416838 AAGCCATCAATAGCGGCACAAAGCCATAAATA
1 AAGCCATCAATAGCGGCACAAAGCCATCAATA
24416870 TCGCAGCAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.42, C:0.26, G:0.19, T:0.13
Consensus pattern (40 bp):
AAGCCATCAATAGCGGCACAAAGCCATCAATAGTGGCACA
Found at i:24422075 original size:25 final size:24
Alignment explanation
Indices: 24422032--24422083 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
24422022 AAAATTTAAT
*
24422032 TAATATGAAATATTAATAATTCAA
1 TAATATGAAAAATTAATAATTCAA
* *
24422056 TAATTTGAAAAATTAGATAATTGAA
1 TAATATGAAAAATTA-ATAATTCAA
24422081 TAA
1 TAA
24422084 AATTAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (24 bp):
TAATATGAAAAATTAATAATTCAA
Found at i:24430169 original size:40 final size:39
Alignment explanation
Indices: 24430125--24430349 Score: 308
Period size: 40 Copynumber: 5.7 Consensus size: 39
24430115 GCCACTAGCT
*
24430125 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
24430165 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
*
24430204 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
24430244 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* ** * *
24430284 CAAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
24430324 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
24430350 TATCATCCGA
Statistics
Matches: 171, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 40 0.23
40 131 0.77
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:24430223 original size:79 final size:79
Alignment explanation
Indices: 24430125--24430349 Score: 310
Period size: 79 Copynumber: 2.8 Consensus size: 79
24430115 GCCACTAGCT
*
24430125 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
24430190 TA-TAATAACTCGCA
65 TATTAATAACTCGCA
* *
24430204 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
24430269 AATTAGTAGCTCGCA
65 TATTAATAACTCGCA
* ** *
24430284 CAAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
24430348 GT
64 GT
24430350 TATCATCCGA
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 66 0.51
80 64 0.49
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATTAATAACTCGCA
Found at i:24434902 original size:79 final size:80
Alignment explanation
Indices: 24434746--24434970 Score: 239
Period size: 79 Copynumber: 2.8 Consensus size: 80
24434736 TTGAATGATG
* * * * **
24434746 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCA-AAGTGACCATATCCGGATTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTG-AGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCA
24434808 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGATACTAAA
* *
24434826 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGAGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
24434887 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
24434905 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGAGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
24434970 G
66 G
24434971 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
78 2 0.02
79 67 0.54
80 45 0.37
81 8 0.07
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGAGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:24434941 original size:40 final size:40
Alignment explanation
Indices: 24434746--24434970 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
24434736 TTGAATGATG
* * * *
24434746 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAA
**
24434786 TCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
* *
24434826 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
*
24434866 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
* *
24434905 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AA
*
24434946 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24434971 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 116 0.72
41 11 0.07
42 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:24434962 original size:119 final size:120
Alignment explanation
Indices: 24434746--24434970 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
24434736 TTGAATGATG
*
24434746 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACCATATCCGGATTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACCAAATCCGGATTAAGATCCGAAGGCATTT
*
24434811 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGAGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
24434866 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCAAATCCGGATTAAGAT-CCGAAGGCAT
* *
24434928 TTGTGAGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGAGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
24434971 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 3 0.03
119 69 0.75
120 20 0.22
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAAGTGACCAAATCCGGATTAAGATCCGAAGGCATTT
GTGAGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:24434992 original size:79 final size:79
Alignment explanation
Indices: 24434799--24435003 Score: 197
Period size: 79 Copynumber: 2.6 Consensus size: 79
24434789 GGATTAAGAT
** ** *
24434799 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGAGAGATAC
*
24434862 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
24434878 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGAGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGAGAGA-TACT
*
24434942 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
24434958 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
24435004 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
78 5 0.05
79 78 0.72
80 25 0.23
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGAGAGATACTA
ATACCGGGCTAAGC
Found at i:24439910 original size:21 final size:21
Alignment explanation
Indices: 24439886--24439955 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
24439876 TAATCTGAAC
24439886 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * **
24439907 TCA-TGATGTATGTGACATTTGAAC
1 TCATTGA-GT-TGTG--GTCTGAGT
*
24439931 TCATTGAGTTTTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
24439952 TCAT
1 TCAT
24439956 GATGTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 3 0.09
24 9 0.26
25 3 0.09
ACGTcount: A:0.20, C:0.11, G:0.26, T:0.43
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:24439934 original size:45 final size:45
Alignment explanation
Indices: 24439881--24439968 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
24439871 CTATGTAATC
24439881 TGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACATT
1 TGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACATT
*
24439926 TGAACTCATTGAGTTTTGGTCTGAGTTCATGATGTATGTGACA
1 TGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACA
24439969 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (45 bp):
TGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACATT
Found at i:24447674 original size:46 final size:48
Alignment explanation
Indices: 24447525--24447795 Score: 267
Period size: 46 Copynumber: 5.8 Consensus size: 48
24447515 ATTTGTTTGT
* * * * *
24447525 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGACCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGA
* ** *
24447571 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
*
24447619 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-A
24447666 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGA
* * * * * * * *
24447711 TAGTCAATGTAATACCGTGTCTAGGACATGGCAT-GGACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
24447757 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
24447796 ACCTTACCCA
Statistics
Matches: 187, Mismatches: 27, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 77 0.41
47 75 0.40
48 31 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
Found at i:24447675 original size:94 final size:95
Alignment explanation
Indices: 24447525--24447796 Score: 308
Period size: 94 Copynumber: 2.9 Consensus size: 95
24447515 ATTTGTTTGT
* * *
24447525 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGACCAC-ATTATG-AGAGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGACCA
**
24447588 TGTCTGGGACATGGCATCGGCAT-TTAGACGA
64 TGTCTGGGACATGGCATCGGCATACGAGACGA
*
24447619 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATG
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATG
*
24447683 TCTGGGACAT-GCATCGGC-TACGAGATGA
66 TCTGGGACATGGCATCGGCATACGAGACGA
* * * * * * * *
24447711 TAG-TCAATGTAATACCGTGTCTAGGACATGGCAT-GGACTTGAGATATGAGCCAGTGTAAGACC
1 GAGCT-AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGACC
24447774 ATGTCTGGGACATGGCATCGGCA
63 ATGTCTGGGACATGGCATCGGCA
24447797 CCTTACCCAC
Statistics
Matches: 153, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
91 2 0.01
92 22 0.14
93 49 0.32
94 70 0.46
95 10 0.07
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (95 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATACGAGACGA
Found at i:24447782 original size:140 final size:141
Alignment explanation
Indices: 24447530--24447795 Score: 344
Period size: 140 Copynumber: 1.9 Consensus size: 141
24447520 TTTGTGAGCT
* * *
24447530 AGTGTAAGACATGTCTAGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGACCACATGATGAGAGCCAATGTAAGACCATGTCTAG
* *
24447595 GACATGGCATCGGCATTTAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGGCATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
24447659 AGATGTAAGCC
131 AGATGTAAGCC
* * * * * * *
24447670 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAATGTAATACCGTGTCTA
1 AGTGTAAGACATGTCTAGGACATGCATCGACCAC-ATGATGAGAGCCAATGTAAGACCATGTCTA
*
24447734 GGACATGGCAT-GG-ACTTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 GGACATGGCATCGGCA-TTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
24447796 ACCTTACCCA
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 2 0.02
139 20 0.19
140 77 0.71
141 9 0.08
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACCACATGATGAGAGCCAATGTAAGACCATGTCTAG
GACATGGCATCGGCATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGATGTAAGCC
Found at i:24449486 original size:79 final size:82
Alignment explanation
Indices: 24449375--24449559 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
24449365 GCTACTCGTT
* * *
24449375 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
24449438 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
24449455 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
24449518 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
24449535 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24449560 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:24449559 original size:40 final size:40
Alignment explanation
Indices: 24449356--24449559 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
24449346 CGGAATTTAA
** *
24449356 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
24449396 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
24449436 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
24449475 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
24449515 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
24449555 CCGGA
1 CCGGA
24449560 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:24457327 original size:39 final size:40
Alignment explanation
Indices: 24457232--24457453 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
24457222 TTGAATGATG
*
24457232 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC--AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
24457270 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
24457311 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24457349 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24457388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24457427 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24457454 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 38 0.23
39 55 0.34
40 68 0.41
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:24457475 original size:79 final size:78
Alignment explanation
Indices: 24457232--24457486 Score: 211
Period size: 79 Copynumber: 3.3 Consensus size: 78
24457222 TTGAATGATG
* * * * *
24457232 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAC--ATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCAT
** *
24457294 TTGTGCGAGAT-ACTAAT
62 TTGAACGAG-TGACTAAA
* * *
24457311 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGA
* *
24457375 GCGAGTTACTAAA
66 ACGAGTGACTAAA
* *
24457388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
24457452 TGAACGAG-GAGCTATA
63 TGAACGAGTGA-CTAAA
* *
24457468 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24457487 TACGTGATTT
Statistics
Matches: 151, Mismatches: 16, Indels: 18
0.82 0.09 0.10
Matches are distributed among these distances:
76 1 0.01
77 36 0.24
78 38 0.25
79 51 0.34
80 25 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGA
ACGAGTGACTAAA
Found at i:24460623 original size:79 final size:82
Alignment explanation
Indices: 24460512--24460696 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
24460502 GCTACTCGTT
* * *
24460512 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
24460575 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
24460592 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
24460655 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
24460672 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24460697 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:24460696 original size:40 final size:40
Alignment explanation
Indices: 24460493--24460696 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
24460483 CGGAATTTAA
** *
24460493 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
24460533 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
24460573 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
24460612 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
24460652 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
24460692 CCGGA
1 CCGGA
24460697 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:24478049 original size:19 final size:19
Alignment explanation
Indices: 24478025--24478062 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24478015 AATTTCTGGA
24478025 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
24478044 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
24478063 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTAG
Found at i:24479409 original size:60 final size:60
Alignment explanation
Indices: 24479336--24479455 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
24479326 CGAAAGCAAG
24479336 GACTTTCCCCCTTCCACTGCACAAGAAAACAAGAGAAAACATGTGAGGTTGATTCTCAAT
1 GACTTTCCCCCTTCCACTGCACAAGAAAACAAGAGAAAACATGTGAGGTTGATTCTCAAT
* * *
24479396 GACTTTCCCCCTTCCACTGCACACGAGAACAAGAGAAACCATGTGAGGTTGATTCTCAAT
1 GACTTTCCCCCTTCCACTGCACAAGAAAACAAGAGAAAACATGTGAGGTTGATTCTCAAT
24479456 ATTAATGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (60 bp):
GACTTTCCCCCTTCCACTGCACAAGAAAACAAGAGAAAACATGTGAGGTTGATTCTCAAT
Found at i:24481958 original size:37 final size:37
Alignment explanation
Indices: 24481897--24481975 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
24481887 TTATTACGAA
* *
24481897 GTCTTACCCGGAAATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGAAATAATCCCCACACGAAGTCATCGG
* *
24481934 GTCTTATCCGGACAA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGA-AATAATCCCCACACGAAGTCATCGG
24481971 GTCTT
1 GTCTT
24481976 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGAAATAATCCCCACACGAAGTCATCGG
Found at i:24482362 original size:49 final size:47
Alignment explanation
Indices: 24482094--24482986 Score: 1504
Period size: 47 Copynumber: 18.7 Consensus size: 47
24482084 CCCTTCGGGA
* * * * * *
24482094 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24482141 CCTGTCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482188 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482235 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482282 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482329 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482425 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482473 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482520 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482568 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482664 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24482760 CTTATCACATATATATACACTTTCTCATTCATCACATCGGCCATTGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24482809 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24482905 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24482952 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
24482987 AGAATCCTAA
Statistics
Matches: 813, Mismatches: 20, Indels: 26
0.95 0.02 0.03
Matches are distributed among these distances:
46 36 0.04
47 452 0.56
48 59 0.07
49 266 0.33
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24482370 original size:96 final size:94
Alignment explanation
Indices: 24482094--24482986 Score: 1504
Period size: 96 Copynumber: 9.4 Consensus size: 94
24482084 CCCTTCGGGA
* * * * * * * *
24482094 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
24482159 TTTCACATTCATCACATCGGTCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
24482188 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24482253 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
24482282 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
24482347 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
24482378 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
24482443 ACTTTCACATTCATCACATCGGCCATT-GGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
24482473 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
24482538 ACTTTCACATTCATCACATCGGCCATT-GGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
24482568 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24482633 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
24482664 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24482729 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
24482760 CTTATCACATATATATACACTTTCTCATTCATCACATCGGCCATTGGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
24482825 ACACTTTCACATTCATCATATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
24482858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24482923 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
24482952 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
24482987 AGAATCCTAA
Statistics
Matches: 774, Mismatches: 17, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
93 1 0.00
94 209 0.27
95 141 0.18
96 330 0.43
97 47 0.06
98 46 0.06
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:24486876 original size:40 final size:40
Alignment explanation
Indices: 24486843--24487074 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
24486833 CCAGCATGAT
* * *
24486843 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
24486883 TGCTCTTCGGGGTTTAGCACGGATATATCTCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
24486923 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
24486963 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
24487003 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
24487043 TGCTCTTCGGGAGTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
24487075 CTCAATTCTC
Statistics
Matches: 172, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 172 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:24487065 original size:120 final size:120
Alignment explanation
Indices: 24486816--24487074 Score: 356
Period size: 120 Copynumber: 2.1 Consensus size: 120
24486806 TAGGCACGAA
* * * *
24486816 AGCCCGAATACACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACG
1 AGCCCGGATACA--TCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACG
** *
24486881 AATGCTCTTCGGGGTTTAGCACGGATATATCTCTAGCACGAATGCTCTTCGGAACTT
64 AATGCTCTTCGGGACTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTT
* ** * *
24486938 AGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
* * *
24487003 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAGTT
66 TGCTCTTCGGGACTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTT
*
24487058 AGCCCGGATATATCACT
1 AGCCCGGATACATCACT
24487075 CTCAATTCTC
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
120 110 0.92
122 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
TGCTCTTCGGGACTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTT
Found at i:24490786 original size:79 final size:81
Alignment explanation
Indices: 24490650--24490834 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
24490640 TTGAATGATG
*
24490650 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
24490714 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
24490729 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
24490791 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
24490809 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24490835 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:24490848 original size:40 final size:40
Alignment explanation
Indices: 24490651--24490834 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
24490641 TGAATGATGT
* * * *
24490651 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
24490691 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
24490731 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24490769 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
24490810 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24490835 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:24490856 original size:79 final size:79
Alignment explanation
Indices: 24490651--24490867 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
24490641 TGAATGATGT
** * * * **
24490651 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
24490714 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
24490731 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
24490796 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
24490810 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
24490868 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:24811033 original size:40 final size:40
Alignment explanation
Indices: 24810983--24811356 Score: 600
Period size: 40 Copynumber: 9.5 Consensus size: 40
24810973 CTCTTCGAGT
* * * *
24810983 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
24811023 TTAGCCCGGATACATCACTAGCACGAATGCTCCTC-GGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
24811062 TTAGCCCAGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811102 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
* *
24811142 TTAGCCCGGATACATCACTAGCATGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811182 TTAG-CCGGATATATCACTAGCACGAATGCT-CTC-GGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811219 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811259 TTAGCCCGG--ATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
24811297 TTAG-CCGGATATATCACTAGCACGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811336 TATAGCCCGGATATAATCACT
1 T-TAGCCCGGATAT-ATCACT
24811357 CTCAATTCTT
Statistics
Matches: 312, Mismatches: 13, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
37 12 0.04
38 62 0.20
39 92 0.29
40 132 0.42
41 8 0.03
42 6 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:24811076 original size:79 final size:80
Alignment explanation
Indices: 24810983--24811356 Score: 600
Period size: 79 Copynumber: 4.7 Consensus size: 80
24810973 CTCTTCGAGT
* * * * *
24810983 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
24811048 AATGCTCCTC-GGAC
66 AATGCTCCTCGGGAC
*
24811062 TTAGCCCAGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
24811127 AATGCTCCTCGGGAC
66 AATGCTCCTCGGGAC
* *
24811142 TTAGCCCGGATACATCACTAGCATGAATGCTCCTCGGGACTTAG-CCGGATATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
24811206 AATGCT-CTC-GGAC
66 AATGCTCCTCGGGAC
24811219 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG--ATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
24811282 AATGCTCCTCGGGAC
66 AATGCTCCTCGGGAC
*
24811297 TTAG-CCGGATATATCACTAGCACGAATGCTCCTCGGGGCTATAGCCCGGATATAATCACT
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACT-TAGCCCGGATAT-ATCACT
24811357 CTCAATTCTT
Statistics
Matches: 275, Mismatches: 12, Indels: 14
0.91 0.04 0.05
Matches are distributed among these distances:
76 20 0.07
77 84 0.31
78 23 0.08
79 95 0.35
80 47 0.17
81 6 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACG
AATGCTCCTCGGGAC
Found at i:24811194 original size:119 final size:119
Alignment explanation
Indices: 24810983--24811356 Score: 623
Period size: 119 Copynumber: 3.2 Consensus size: 119
24810973 CTCTTCGAGT
* * * *
24810983 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
*
24811048 AATGCTCCTC-GGACTTAGCCCAGATATATCACTAGCACGAATGCTCCTCGGGAC
66 AATGCTCCTCGGGACTTAG-CCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
24811102 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCATG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
24811167 AATGCTCCTCGGGACTTAGCCGGATATATCACTAGCACGAATGCT-CTC-GGAC
66 AATGCTCCTCGGGACTTAGCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811219 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT--ATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
*
24811282 AATGCTCCTCGGGACTTAGCCGGATATATCACTAGCACGAATGCTCCTCGGGGC
66 AATGCTCCTCGGGACTTAGCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
24811336 TATAGCCCGGATATAATCACT
1 T-TAGCCCGGATAT-ATCACT
24811357 CTCAATTCTT
Statistics
Matches: 242, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
115 56 0.23
116 3 0.01
117 59 0.24
118 15 0.06
119 101 0.42
120 8 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (119 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACG
AATGCTCCTCGGGACTTAGCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:24813219 original size:37 final size:37
Alignment explanation
Indices: 24813169--24813247 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24813159 TTATTACGAA
* *
24813169 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24813206 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24813243 GTCTT
1 GTCTT
24813248 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24813444 original size:47 final size:47
Alignment explanation
Indices: 24813366--24813806 Score: 785
Period size: 47 Copynumber: 9.4 Consensus size: 47
24813356 CCCTTCGGGA
* * * * * * *
24813366 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24813413 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813460 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813507 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813601 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813647 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813694 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24813741 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813788 CTTATCACATATATACACT
1 CTTATCACATATATACACT
24813807 GTCTTGGCTG
Statistics
Matches: 381, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
46 46 0.12
47 335 0.88
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24813694 original size:187 final size:188
Alignment explanation
Indices: 24813366--24813806 Score: 785
Period size: 187 Copynumber: 2.4 Consensus size: 188
24813356 CCCTTCGGGA
* * * * * * * * *
24813366 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24813431 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
24813496 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24813554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24813619 TTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
24813683 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24813741 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24813806 T
66 T
24813807 GTCTTGGCTG
Statistics
Matches: 243, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
187 167 0.69
188 76 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24829833 original size:43 final size:43
Alignment explanation
Indices: 24829785--24829934 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
24829775 GGTTATCAAG
*
24829785 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
** *
24829828 TTGTGATTACATGTAAGACTGTGTCTGGGACATTGGCATCATA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
* * * * * *
24829871 TAGTGATT-CGTGTAAGACCCTTTCTAGGACAGTGGCATCG-A
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
* *
24829912 TATGTGATAACATGTAAAACCAT
1 T-TGTGATTACATGTAAGACCAT
24829935 ATTTGGGATA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
41 2 0.02
42 30 0.34
43 56 0.64
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
Found at i:24832977 original size:43 final size:43
Alignment explanation
Indices: 24832819--24832975 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
24832809 TGTGTTATCG
* * *
24832819 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTAATTTGCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * * *
24832863 TGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* *
24832905 TGTAAGACC-CTGTCTGGGATAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTACA
24832948 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
24832976 TGTACAAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 28 0.30
43 36 0.38
44 30 0.32
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:24836127 original size:15 final size:15
Alignment explanation
Indices: 24836107--24836136 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24836097 GGTTCTTGAT
*
24836107 TTAAACTTATTCAAA
1 TTAAACTCATTCAAA
24836122 TTAAACTCATTCAAA
1 TTAAACTCATTCAAA
24836137 CTTATTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAACTCATTCAAA
Found at i:24840566 original size:37 final size:36
Alignment explanation
Indices: 24840490--24840567 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
24840480 TTATTACGAA
* * *
24840490 GTCTTACCCAGACATAATCTCCACCGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACCGAAGTCATCGG
* *
24840526 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCAC-CGAAGTCATCGG
24840563 GTCTT
1 GTCTT
24840568 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 21 0.58
37 15 0.42
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCAGACAAAATCCCCACCGAAGTCATCGG
Found at i:24840907 original size:49 final size:47
Alignment explanation
Indices: 24840686--24841211 Score: 878
Period size: 47 Copynumber: 11.1 Consensus size: 47
24840676 CCCTTCGGGA
* * * * * *
24840686 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24840733 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24840780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24840827 C-TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24840873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24840922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24840969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24841016 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24841065 C-TATCACGTATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24841110 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24841159 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24841208 CTTA
1 CTTA
24841212 CTATCATTTC
Statistics
Matches: 458, Mismatches: 12, Indels: 16
0.94 0.02 0.03
Matches are distributed among these distances:
45 30 0.07
46 59 0.13
47 187 0.41
48 14 0.03
49 168 0.37
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24841059 original size:143 final size:143
Alignment explanation
Indices: 24840686--24841211 Score: 918
Period size: 143 Copynumber: 3.7 Consensus size: 143
24840676 CCCTTCGGGA
* * * * * * *
24840686 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24840749 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24840814 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
24840827 C-TATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24840891 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24840956 TCGGCCATTAGGC
131 TCGGCCATTAGGC
24840969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
24841034 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACGTATATACA-TTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24841097 TCGGCCATTAGGC
131 TCGGCCATTAGGC
24841110 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
24841175 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24841212 CTATCATTTC
Statistics
Matches: 369, Mismatches: 10, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
140 45 0.12
141 38 0.10
142 101 0.27
143 183 0.50
144 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:24844514 original size:39 final size:39
Alignment explanation
Indices: 24844471--24844736 Score: 171
Period size: 39 Copynumber: 6.9 Consensus size: 39
24844461 TACACGTCAC
* * * *
24844471 CAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACA
1 CAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACA
*
24844510 CAGCACGAATGCTCTTC-GAACTTAGTCCGGATACCTCAAC-
1 CAGCACGAATGCTCTTCGGAACTTAGCCCGGATA--T-AACA
* * *
24844550 TAGCACGAATGCTCTTCGGAACTTAGCCCGGA-ACATCA
1 CAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACA
* * * *
24844588 CTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATATCA
1 C-AGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACA
* *
24844628 CTAGCACGAATG--C-TCGG-ACTTAGCTCGGATTTAGTAACT
1 C-AGCACGAATGCTCTTCGGAACTTAGCCCGGA--TA-TAACA
* * * *
24844667 C-GTACCAATGC-CTTCGG-GCTTAGCCCGGATTAGTAACT
1 CAGCACGAATGCTCTTCGGAACTTAGCCCGGA-TA-TAACA
* *
24844705 CA-CAC-AATGC-CTTCGGATCTTAGTCCGGATAT
1 CAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT
24844737 GGTCACTTAG
Statistics
Matches: 187, Mismatches: 26, Indels: 31
0.77 0.11 0.13
Matches are distributed among these distances:
36 11 0.06
37 26 0.14
38 39 0.21
39 61 0.33
40 34 0.18
41 16 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CAGCACGAATGCTCTTCGGAACTTAGCCCGGATATAACA
Found at i:24844559 original size:40 final size:40
Alignment explanation
Indices: 24844480--24844642 Score: 206
Period size: 39 Copynumber: 4.1 Consensus size: 40
24844470 CCAGCATGAT
* * * *
24844480 TGCTCTTCGGGACCTAGCCCGGATATAACAC-AGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
24844519 TGCTCTTC-GAACTTAGTCCGGATACCTCAACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATC-ACTAGCACGAA
*
24844559 TGCTCTTCGGAACTTAGCCCGGA-ACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
24844598 TGCTCTTCGGGACTTAGCCCGGTTATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
24844638 TGCTC
1 TGCTC
24844643 GGACTTAGCT
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
38 14 0.13
39 41 0.38
40 39 0.36
41 13 0.12
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:24844631 original size:79 final size:79
Alignment explanation
Indices: 24844480--24844642 Score: 204
Period size: 79 Copynumber: 2.1 Consensus size: 79
24844470 CCAGCATGAT
* * * *
24844480 TGCTCTTCGGGACCTAGCCCGGATATAACACAGCACGAATGCTCTTCGAACTTAGTCCGGATACC
1 TGCTCTTCGGAACCTAGCCCGGATACAACACAGCACGAATGCTCTTCGAACTTAGCCCGGATACA
24844545 TCAACTAGCACGAA
66 TCAACTAGCACGAA
* * * * *
24844559 TGCTCTTCGGAACTTAGCCCGGA-ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTA
1 TGCTCTTCGGAACCTAGCCCGGATACAACAC-AGCACGAATGCTCTTC-GAACTTAGCCCGGATA
*
24844623 TATC-ACTAGCACGAA
64 CATCAACTAGCACGAA
24844638 TGCTC
1 TGCTC
24844643 GGACTTAGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
78 5 0.07
79 52 0.72
80 15 0.21
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
TGCTCTTCGGAACCTAGCCCGGATACAACACAGCACGAATGCTCTTCGAACTTAGCCCGGATACA
TCAACTAGCACGAA
Found at i:24844727 original size:38 final size:37
Alignment explanation
Indices: 24844641--24844734 Score: 118
Period size: 38 Copynumber: 2.5 Consensus size: 37
24844631 GCACGAATGC
*
24844641 TCGGACTTAGCTCGGATTTAGTAACTCGTACCAATGCCT
1 TCGGACTTAGCCCGGA-TTAGTAACTCG-ACCAATGCCT
*
24844680 TCGGGCTTAGCCCGGATTAGTAACTC-ACACAATGCCT
1 TCGGACTTAGCCCGGATTAGTAACTCGAC-CAATGCCT
*
24844717 TCGGATCTTAGTCCGGAT
1 TCGGA-CTTAGCCCGGAT
24844735 ATGGTCACTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 2 0.04
37 12 0.24
38 21 0.43
39 14 0.29
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (37 bp):
TCGGACTTAGCCCGGATTAGTAACTCGACCAATGCCT
Found at i:24848188 original size:103 final size:104
Alignment explanation
Indices: 24848000--24848263 Score: 401
Period size: 104 Copynumber: 2.5 Consensus size: 104
24847990 TAACCGTTAT
* **
24848000 TGGTGGATCTCGCACTTAGCACCACCGCTGAATC-GGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAA-CCCTCGGGGG
24848064 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
24848103 T-GTGGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCTCGGGGG
1 TGGT-GGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGG
24848167 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* * **
24848207 TGGTGGATCA-CGCACATAGCACCCCCAATGAATCGGGGAATCAGCACACAGCAACCC
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCC
24848264 CTTTATATAC
Statistics
Matches: 147, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
102 2 0.01
103 58 0.39
104 84 0.57
105 3 0.02
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:24848426 original size:20 final size:21
Alignment explanation
Indices: 24848388--24848427 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
24848378 ATTTTAATTC
* *
24848388 CAAATAAATCTCAACATATAT
1 CAAATAAATATCAAAATATAT
24848409 CAAAT-AATATCAAAATATA
1 CAAATAAATATCAAAATATA
24848428 CAATAAGCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (21 bp):
CAAATAAATATCAAAATATAT
Found at i:24850937 original size:20 final size:20
Alignment explanation
Indices: 24850914--24850952 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
24850904 TAAACATGGT
24850914 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
24850934 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
24850953 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:24851036 original size:23 final size:23
Alignment explanation
Indices: 24851006--24851241 Score: 321
Period size: 23 Copynumber: 10.1 Consensus size: 23
24850996 AGGAAGTGAA
* *
24851006 AAAGGGCTTACGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
24851029 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
24851052 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
24851076 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
24851099 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
24851122 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* * *
24851146 AAAGAGCTTACG-CCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
24851169 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
24851192 GAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
24851216 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
24851239 AAA
1 AAA
24851242 AGAGGCTAGG
Statistics
Matches: 190, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
23 130 0.68
24 60 0.32
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:24851092 original size:47 final size:46
Alignment explanation
Indices: 24851006--24851263 Score: 331
Period size: 47 Copynumber: 5.5 Consensus size: 46
24850996 AGGAAGTGAA
* * *
24851006 AAAGGGCTTACGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
*
24851052 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
* * *
24851099 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-T
* *
24851146 AAAGAGCTTACG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
* *
24851192 GAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
24851239 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
24851264 TGATAAAGCA
Statistics
Matches: 185, Mismatches: 20, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
46 58 0.31
47 107 0.58
48 9 0.05
49 11 0.06
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:24851121 original size:70 final size:70
Alignment explanation
Indices: 24851005--24851241 Score: 386
Period size: 70 Copynumber: 3.4 Consensus size: 70
24850995 GAGGAAGTGA
*
24851005 AAAAGGGCTTACGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
24851070 TTATC
66 TTATC
*
24851075 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
24851140 TTATC
66 TTATC
* * *
24851145 AAAAGAGCTTACG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTGAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
*
24851209 GTTATA
65 GTTATC
**
24851215 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTACGCCCCAGTTATTAAA
24851242 AGAGGCTAGG
Statistics
Matches: 154, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
69 9 0.06
70 136 0.88
71 9 0.06
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG
TTATC
Found at i:24851492 original size:31 final size:31
Alignment explanation
Indices: 24851456--24851519 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
24851446 CGTTTACAGT
* *
24851456 AAAGGCTTCGGCCTAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
24851487 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
24851518 AA
1 AA
24851520 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:24853839 original size:27 final size:27
Alignment explanation
Indices: 24853751--24853846 Score: 102
Period size: 28 Copynumber: 3.5 Consensus size: 27
24853741 AACAAAATCT
*
24853751 GCACACACAGTGCCCACTGACCGATCTC
1 GCACACATAGTGCCCACTGACCGAT-TC
* * ** * **
24853779 GCGCACATAGTGCTCGGTTAAAGAATTC
1 GCACACATAGTGCCCACTGACCG-ATTC
24853807 GCACACATAGTGCCCACTGACCGATTC
1 GCACACATAGTGCCCACTGACCGATTC
24853834 GCACACATAGTGC
1 GCACACATAGTGC
24853847 TCGGTTAAAG
Statistics
Matches: 52, Mismatches: 15, Indels: 3
0.74 0.21 0.04
Matches are distributed among these distances:
27 17 0.33
28 33 0.63
29 2 0.04
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.19
Consensus pattern (27 bp):
GCACACATAGTGCCCACTGACCGATTC
Found at i:24853860 original size:55 final size:55
Alignment explanation
Indices: 24853751--24853899 Score: 223
Period size: 55 Copynumber: 2.7 Consensus size: 55
24853741 AACAAAATCT
*
24853751 GCACACACAGTGCCCACTGACCGATCTCGCGCACATAGTGCTCGGTTAAAGAATTC
1 GCACACACAGTGCCCACTGACCGAT-TCGCACACATAGTGCTCGGTTAAAGAATTC
*
24853807 GCACACATAGTGCCCACTGACCGATTCGCACACATAGTGCTCGGTTAAAGAATTC
1 GCACACACAGTGCCCACTGACCGATTCGCACACATAGTGCTCGGTTAAAGAATTC
* *
24853862 GCACACACAGTGCCTCAAT--TC-ATTCGCACACATAGTGC
1 GCACACACAGTGCC-CACTGACCGATTCGCACACATAGTGC
24853900 CTATATTCAT
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
53 17 0.20
54 1 0.01
55 42 0.48
56 27 0.31
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (55 bp):
GCACACACAGTGCCCACTGACCGATTCGCACACATAGTGCTCGGTTAAAGAATTC
Found at i:24853873 original size:28 final size:28
Alignment explanation
Indices: 24853777--24853874 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
24853767 CTGACCGATC
*
24853777 TCGCGCACATAGTGCTCGGTTAAAGAAT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
* ** * **
24853805 TCGCACACATAGTGCCCACTGACCG-AT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
24853832 TCGCACACATAGTGCTCGGTTAAAGAAT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
*
24853860 TCGCACACACAGTGC
1 TCGCACACATAGTGC
24853875 CTCAATTCAT
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 21 0.38
28 34 0.62
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGGTTAAAGAAT
Found at i:24853892 original size:25 final size:25
Alignment explanation
Indices: 24853858--24853910 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
24853848 CGGTTAAAGA
24853858 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
24853883 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
24853908 ATT
1 ATT
24853911 TGTTATTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.30
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:24854092 original size:43 final size:43
Alignment explanation
Indices: 24854031--24854173 Score: 178
Period size: 43 Copynumber: 3.3 Consensus size: 43
24854021 CTTTTCTCGA
** *
24854031 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
* * *
24854074 ATCACCGGCACGAAGCCTGTTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
* * * * *
24854117 ATCACCAGCACAAAGCCTGCTAGGCATGAAGGCCTAATTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
*
24854160 ATCACCGGTACGAA
1 ATCACCGGCACGAA
24854174 TGCCCTTCAG
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
Found at i:24854281 original size:40 final size:40
Alignment explanation
Indices: 24854169--24854281 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 40
24854159 CATCACCGGT
* * *
24854169 ACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGC
*
24854209 ACGAATTCTCTTCGGGA-TTAGCCCGGATATAACACCAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGC
24854248 ACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
24854282 TCTCAATTCT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
39 37 0.55
40 30 0.45
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
ACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGC
Found at i:24863716 original size:26 final size:26
Alignment explanation
Indices: 24863677--24863729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24863667 CGATAAAAGC
*
24863677 TGAAATACCGAAACGTTGGTATTTTG
1 TGAAATACCAAAACGTTGGTATTTTG
24863703 TGAAATACCAAAACGTTGGTATTTTG
1 TGAAATACCAAAACGTTGGTATTTTG
24863729 T
1 T
24863730 TACATCCTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (26 bp):
TGAAATACCAAAACGTTGGTATTTTG
Found at i:24877879 original size:13 final size:13
Alignment explanation
Indices: 24877861--24877886 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24877851 ATATTATAAT
24877861 TATTTTATGTTAA
1 TATTTTATGTTAA
24877874 TATTTTATGTTAA
1 TATTTTATGTTAA
24877887 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:24879267 original size:40 final size:40
Alignment explanation
Indices: 24879219--24879424 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
24879209 GGACTAAGAT
24879219 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
24879259 CTGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
24879299 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGATAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
24879339 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
24879379 CCGAAGGCATTTGTGCGAGTTG-CTATATTC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
*
24879418 TCGAAGG
1 CCGAAGG
24879425 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.09
40 137 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:24885810 original size:13 final size:13
Alignment explanation
Indices: 24885792--24885817 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24885782 ATATTATAAT
24885792 TATTTTATGTTAA
1 TATTTTATGTTAA
24885805 TATTTTATGTTAA
1 TATTTTATGTTAA
24885818 AAAAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:24887221 original size:40 final size:39
Alignment explanation
Indices: 24887173--24887298 Score: 182
Period size: 40 Copynumber: 3.2 Consensus size: 39
24887163 GGACTAAGAT
24887173 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTG-CTATATCCGGGCTAAGTC
* *
24887213 CCGAAGGCATTTGTGCTAGTGGTTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGT-GCTATATCCGGGCTAAGTC
* *
24887253 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGCTATATCCGGGCTAAGTC
24887292 CCGAAGG
1 CCGAAGG
24887299 TACTTGGGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
39 15 0.19
40 61 0.78
41 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTGCTATATCCGGGCTAAGTC
Found at i:24892636 original size:27 final size:27
Alignment explanation
Indices: 24892606--24892667 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
24892596 ATTTACTAAA
24892606 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* * *
24892633 ATA-CCTTTAGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
24892659 ATACCCCTA
1 ATACCCCTA
24892668 GGGTTAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.71
27 6 0.21
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:24892815 original size:27 final size:28
Alignment explanation
Indices: 24892773--24892885 Score: 153
Period size: 27 Copynumber: 4.2 Consensus size: 28
24892763 GAGGAAGCGT
24892773 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
24892800 TCTGGTGGCTCCGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
24892828 TCTGGTGGCTCTGCCA-TAATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
24892855 TCTGGTGACTCTGTCAC-AATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
24892881 TCTGG
1 TCTGG
24892886 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
26 5 0.06
27 57 0.74
28 15 0.19
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:24892879 original size:54 final size:54
Alignment explanation
Indices: 24892771--24892885 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 54
24892761 TGGAGGAAGC
*
24892771 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCCGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCCGCCACAAATATCT
* * *
24892825 GTTTCTGGTGGCTCTGCCA-TAATATCTGTATCTGGTGACTCTGTCAC-AATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCCGCCACAAATATCT
24892879 GTTCTGG
1 GTTCTGG
24892886 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 6 0.11
54 17 0.31
55 32 0.58
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCCGCCACAAATATCT
Found at i:24902060 original size:34 final size:34
Alignment explanation
Indices: 24902022--24902094 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
24902012 AGTGACAGTC
*
24902022 CAGTATCAGT-TAGGGCATTAGCCCAATACAGTAT
1 CAGTATCAGTGT-GGGCATTAGCCCAATACAGTAA
* * *
24902056 CAGTATCTGTGTGGGCCTTAGCCCAATTCAGTAA
1 CAGTATCAGTGTGGGCATTAGCCCAATACAGTAA
24902090 CAGTA
1 CAGTA
24902095 ACAGAAATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCATTAGCCCAATACAGTAA
Found at i:24904488 original size:85 final size:85
Alignment explanation
Indices: 24904391--24904550 Score: 266
Period size: 85 Copynumber: 1.9 Consensus size: 85
24904381 AGTGTGTCGC
* * * * *
24904391 ACACGGCTGAGACGCGCGCCCGTATCTCTACCTGTGTGGACAAAAATAGGCTACTTTTAAAGCTA
1 ACACGGCTGAGACACACGCCCGTATCTCTACCTGTGTAGACAAAAATAGGCTACTTGTAAAGCCA
24904456 TTTTGCCACCATTGTGTCAT
66 TTTTGCCACCATTGTGTCAT
*
24904476 ACACGGCTGAGACACACGCCCGTATCTCTGCCTGTGTAGACAAAAATAGGCTACTTGTAAAGCCA
1 ACACGGCTGAGACACACGCCCGTATCTCTACCTGTGTAGACAAAAATAGGCTACTTGTAAAGCCA
24904541 TTTTGCCACC
66 TTTTGCCACC
24904551 CTACAATCAC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (85 bp):
ACACGGCTGAGACACACGCCCGTATCTCTACCTGTGTAGACAAAAATAGGCTACTTGTAAAGCCA
TTTTGCCACCATTGTGTCAT
Found at i:24909126 original size:29 final size:28
Alignment explanation
Indices: 24909084--24909144 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
24909074 GTAAGCACGA
* *
24909084 ATATAAGGTTATTTGGGCATAACGGGCC
1 ATATAAGGTGATTTGGGCATAACAGGCC
* *
24909112 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCATAACAGGCC
24909141 ATAT
1 ATAT
24909145 GAATATGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCATAACAGGCC
Found at i:24910902 original size:24 final size:24
Alignment explanation
Indices: 24910848--24910940 Score: 84
Period size: 24 Copynumber: 3.9 Consensus size: 24
24910838 AGTCATGGTC
* *
24910848 GGTAAGCTCTTACTAAGCTGATAAAT
1 GGTAAGCTC-TATTGAGCTGA-AAAT
*
24910874 AGTAAGCTCTATTGAGCTGAAAAT
1 GGTAAGCTCTATTGAGCTGAAAAT
* * *
24910898 GGTAAACTCTAATGAGCTGAACA-
1 GGTAAGCTCTATTGAGCTGAAAAT
24910921 -GTAAGCTCT-TTCGAGCTGAA
1 GGTAAGCTCTATT-GAGCTGAA
24910941 TCGGTAAGAT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
21 1 0.02
22 16 0.28
24 23 0.40
25 9 0.16
26 8 0.14
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (24 bp):
GGTAAGCTCTATTGAGCTGAAAAT
Found at i:24913797 original size:105 final size:105
Alignment explanation
Indices: 24913591--24913859 Score: 452
Period size: 105 Copynumber: 2.6 Consensus size: 105
24913581 TAACCGTTAT
* * *
24913591 TGGTGGATCTCGCACTTAGCACCACCACTGAATTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
24913656 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
24913696 TGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
24913761 GAATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
24913801 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
24913860 TTTATATACA
Statistics
Matches: 156, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
104 27 0.17
105 73 0.47
106 56 0.36
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:24920686 original size:26 final size:26
Alignment explanation
Indices: 24920650--24920699 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
24920640 ACCACTGAAT
*
24920650 GGGGAATCAGCACTTAGCAACCCCTC
1 GGGGAATCAGCACATAGCAACCCCTC
24920676 GGGGAATCAGCACATAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
24920700 CTTTTCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (26 bp):
GGGGAATCAGCACATAGCAACCCCTC
Found at i:24920780 original size:26 final size:26
Alignment explanation
Indices: 24920751--24920802 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24920741 ACCAATGAAA
*
24920751 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
24920777 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
24920803 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:24920795 original size:103 final size:103
Alignment explanation
Indices: 24920616--24920880 Score: 410
Period size: 103 Copynumber: 2.6 Consensus size: 103
24920606 AACCGTTATT
* *
24920616 GGTGGATCTCAGCACTTAGCCACCACCACTGAAT-GGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGATATC-GCACTTAG-CACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
24920680 AATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATAC
64 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
24920719 GGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
*
24920784 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAT
65 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
24920823 GGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
24920881 TTTATATACA
Statistics
Matches: 151, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
101 10 0.07
102 11 0.07
103 90 0.60
104 39 0.26
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:24928881 original size:14 final size:13
Alignment explanation
Indices: 24928861--24928892 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
24928851 AATATTTGAC
24928861 TTGTTCTTAATTA
1 TTGTTCTTAATTA
24928874 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
24928888 TTGTT
1 TTGTT
24928893 TTGATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:24929522 original size:30 final size:30
Alignment explanation
Indices: 24929488--24929549 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
24929478 TTTCAAGAAT
24929488 GATTCATTATAAATATTTAAAACCTGTCAC
1 GATTCATTATAAATATTTAAAACCTGTCAC
*
24929518 GATTCATTATAAATATTTAAAACTTGTCAC
1 GATTCATTATAAATATTTAAAACCTGTCAC
24929548 GA
1 GA
24929550 ATATCACGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (30 bp):
GATTCATTATAAATATTTAAAACCTGTCAC
Found at i:24929709 original size:22 final size:22
Alignment explanation
Indices: 24929679--24929720 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
24929669 TCTGGCAACG
*
24929679 GATACAGGTTAGGGGTGTTATA
1 GATACAGGTTAAGGGTGTTATA
* *
24929701 GATATAGGTTAAGTGTGTTA
1 GATACAGGTTAAGGGTGTTA
24929721 CAGGATTACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.33, T:0.36
Consensus pattern (22 bp):
GATACAGGTTAAGGGTGTTATA
Found at i:24940697 original size:17 final size:17
Alignment explanation
Indices: 24940675--24940708 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
24940665 TCACATGAGA
24940675 GGGGTTTGATCTATATT
1 GGGGTTTGATCTATATT
24940692 GGGGTTTGATCTATATT
1 GGGGTTTGATCTATATT
24940709 TATGTAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.29, T:0.47
Consensus pattern (17 bp):
GGGGTTTGATCTATATT
Found at i:24946341 original size:37 final size:37
Alignment explanation
Indices: 24946291--24946369 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24946281 TTATTACGAA
* * *
24946291 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24946328 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24946365 GTCTT
1 GTCTT
24946370 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24946551 original size:47 final size:47
Alignment explanation
Indices: 24946488--24946986 Score: 777
Period size: 47 Copynumber: 10.6 Consensus size: 47
24946478 CCCTTCGGGA
* * * *
24946488 CTTACCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24946535 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGG
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24946582 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
24946629 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
24946676 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24946723 CTTATCACACATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24946770 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
24946817 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
24946866 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
24946913 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
24946960 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24946987 TATTCAATAT
Statistics
Matches: 429, Mismatches: 19, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 380 0.89
48 1 0.00
49 47 0.11
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:24946708 original size:25 final size:25
Alignment explanation
Indices: 24946679--24946756 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
24946669 ATTCGGCCTT
24946679 ATCACACATATACACTTTCACATTC
1 ATCACACATATACACTTTCACATTC
* * * *
24946704 AT--CACAT-TGGC-CATTCGGCCTT-
1 ATCACACATAT-ACACTTTC-ACATTC
24946726 ATCACACATATACACTTTCACATTC
1 ATCACACATATACACTTTCACATTC
24946751 ATCACA
1 ATCACA
24946757 TTGGCCATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 7 0.18
23 9 0.24
24 9 0.24
25 13 0.34
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.31
Consensus pattern (25 bp):
ATCACACATATACACTTTCACATTC
Found at i:24950886 original size:93 final size:93
Alignment explanation
Indices: 24950773--24950944 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24950763 CGCCCATAAG
* *
24950773 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24950838 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
24950866 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24950931 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
24950945 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24950941 original size:46 final size:46
Alignment explanation
Indices: 24950766--24950941 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
24950756 TGTAACCCGC
* * *
24950766 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
24950812 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
24950862 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
24950905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
24950942 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:24955318 original size:47 final size:47
Alignment explanation
Indices: 24955255--24955521 Score: 477
Period size: 47 Copynumber: 5.7 Consensus size: 47
24955245 ATGATAGTAT
24955255 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
24955302 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
24955348 -GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
24955394 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
24955440 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
24955489 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
24955522 CCCGAAGGGC
Statistics
Matches: 213, Mismatches: 1, Indels: 9
0.96 0.00 0.04
Matches are distributed among these distances:
45 41 0.19
46 42 0.20
47 86 0.40
48 12 0.06
49 28 0.13
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:24955413 original size:92 final size:93
Alignment explanation
Indices: 24955256--24955521 Score: 480
Period size: 92 Copynumber: 2.8 Consensus size: 93
24955246 TGATAGTATG
24955256 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
24955321 TGAATGTGAAAGTGTATATATGT-ATAA
66 TGAATGTGAAAGTGTATATATGTGATAA
24955348 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
24955413 TGAATGTGAAAGTGTATATATGTGATAG
66 TGAATGTGAAAGTGTATATATGTGATAA
*
24955441 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGT
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
24955506 GATGAATGTGATAAGT
64 GATGAATGTGA-AAGT
24955522 CCCGAAGGGC
Statistics
Matches: 168, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
92 88 0.52
93 35 0.21
95 41 0.24
96 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (93 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGTGTATATATGTGATAA
Found at i:24955693 original size:36 final size:37
Alignment explanation
Indices: 24955638--24955715 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
24955628 CCGAGCTCTA
* *
24955638 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
24955674 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24955711 AAGAC
1 AAGAC
24955716 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24957656 original size:29 final size:29
Alignment explanation
Indices: 24957621--24957694 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
24957611 GTTGTGAGAT
* *
24957621 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAATTACA
*
24957650 TGGCACTAAGTGTGCGAGTTTAAATTACA
1 TGGCACTAAGTGTGCGAGTTGAAATTACA
24957679 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24957695 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAATTACA
Found at i:24958130 original size:40 final size:40
Alignment explanation
Indices: 24958086--24958359 Score: 341
Period size: 40 Copynumber: 6.8 Consensus size: 40
24958076 TTACTAAATT
*
24958086 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
24958126 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
24958166 CAGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* *
24958206 CGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
24958246 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* ** * * * * *
24958286 CGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * * * * *
24958326 TGGGCTAGGTCCTGAAGAGTAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
24958360 CGTGTATTCG
Statistics
Matches: 204, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 204 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:24958141 original size:80 final size:80
Alignment explanation
Indices: 24958004--24958359 Score: 362
Period size: 80 Copynumber: 4.5 Consensus size: 80
24957994 TCGAATGATG
* ** * *
24958004 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * **
24958065 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA
* * * *
24958084 TTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
24958149 CATGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* *
24958164 TCCAGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
24958229 CGTGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * ** *
24958244 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
24958309 CGTGCTGGTGTTATA
66 CGTGCTAGTGATGTA
* * * * *
24958324 TCTGGGCT-AGGTCCTGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTTCC-GAAGAGCATTCATGCTAGTGA
24958360 CGTGTATTCG
Statistics
Matches: 235, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
79 6 0.03
80 205 0.87
81 18 0.08
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTA
Found at i:24958217 original size:120 final size:119
Alignment explanation
Indices: 24958004--24958354 Score: 395
Period size: 120 Copynumber: 2.9 Consensus size: 119
24957994 TCGAATGATG
* *
24958004 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGG-CTAAGATCCGAAGAGCA
* * * * *
24958066 TTGGTGCGAGTTACTAAATTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
63 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
24958124 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCAGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC-GGCTAAGATCCGAAGAGCATT
* * * *
24958189 CATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
65 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
24958244 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG-GCTAAGA-TCCGAAGAGCAT
* * * * * * *
24958308 TCGTGCTGGTGTTATATCTGGGCTAGGTCCTGAAGAGTAATCATGCT
64 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
24958355 GGTGACGTGT
Statistics
Matches: 195, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
119 1 0.01
120 167 0.86
121 21 0.11
122 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGATCCGAAGAGCATTC
GTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:24962043 original size:49 final size:47
Alignment explanation
Indices: 24961844--24962115 Score: 463
Period size: 47 Copynumber: 5.7 Consensus size: 47
24961834 ATGATAGTAT
24961844 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
24961891 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
24961938 GGCCTACTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
24961985 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
24962034 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
24962083 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
24962116 CCCGAAGGGC
Statistics
Matches: 217, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
47 123 0.57
49 90 0.41
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:24962288 original size:36 final size:37
Alignment explanation
Indices: 24962233--24962310 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
24962223 CCGAGCTCTA
* * *
24962233 AAGACCCGATGACTACGTGTGGGGATTTTGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
24962269 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24962306 AAGAC
1 AAGAC
24962311 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 29 0.78
37 8 0.22
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24971446 original size:27 final size:27
Alignment explanation
Indices: 24971415--24971591 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
24971405 TAAATTGTAC
*
24971415 AGCACTAAGTGTGCGATTTGACAATGT
1 AGCACTAAGTGTGCGAATTGACAATGT
* *
24971442 TGCACTAAGTGTGCGAAATGA-ATATG-
1 AGCACTAAGTGTGCGAATTGACA-ATGT
* *
24971468 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACAATGT
* * *
24971496 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACAATGT
** *
24971524 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACAATGT
* ** *
24971550 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACAATGT
*
24971577 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24971592 GACTCAATAT
Statistics
Matches: 126, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
26 24 0.19
27 80 0.63
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACAATGT
Found at i:24971476 original size:54 final size:54
Alignment explanation
Indices: 24971415--24971591 Score: 189
Period size: 54 Copynumber: 3.3 Consensus size: 54
24971405 TAAATTGTAC
* *
24971415 AGCACTAAGTGTGCGATTTGACAATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGA-TTGACAATGTAGCACTAAGTGTGCGAATTGAATATGAT
* ** * *
24971470 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCG-ATTGACAATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
** * * *
24971524 AGCACTAAGTGTGCGATTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTGACAATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
24971577 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24971592 GACTCAATAT
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
53 22 0.21
54 60 0.58
55 22 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACAATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:24971556 original size:81 final size:81
Alignment explanation
Indices: 24971416--24971570 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
24971406 AAATTGTACA
* *
24971416 GCACTAAGTGTGCGATTTGACAATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
24971481 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
24971497 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
24971560 GTGCGAGTTGA
64 GTGCGAATTGA
24971571 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 41 0.62
82 24 0.36
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24971582 original size:81 final size:81
Alignment explanation
Indices: 24971412--24971591 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
24971402 GATTAAATTG
* *
24971412 TACAGCACTAAGTGTGCGATTTGACAATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24971477 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
24971493 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24971556 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24971574 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24971592 GACTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 58 0.70
82 24 0.29
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACAATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24978686 original size:27 final size:27
Alignment explanation
Indices: 24978655--24978831 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24978645 TAAATTGTAC
*
24978655 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
24978682 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
24978708 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
24978736 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
*
24978764 AGCACTAAGTGTGCG-ATTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
24978790 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
24978817 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24978832 GACTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 24 0.19
27 82 0.64
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:24978801 original size:81 final size:81
Alignment explanation
Indices: 24978656--24978810 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
24978646 AAATTGTACA
*
24978656 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
24978721 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
24978737 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTATG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
*
24978800 GTGCGAGTTGA
64 GTGCGAATTGA
24978811 TTATATAGCA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
80 1 0.01
81 42 0.62
82 25 0.37
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24978822 original size:81 final size:81
Alignment explanation
Indices: 24978652--24978831 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
24978642 GATTAAATTG
*
24978652 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
24978717 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
24978733 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
24978796 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24978814 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24978832 GACTCAATAT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 1 0.01
81 59 0.69
82 25 0.29
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24980420 original size:12 final size:12
Alignment explanation
Indices: 24980381--24980413 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
24980371 CCCTCGTTTA
24980381 TTTTCACTCACT
1 TTTTCACTCACT
*
24980393 TTTTCACTCACC
1 TTTTCACTCACT
24980405 TTTTCACTC
1 TTTTCACTC
24980414 TTTTTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.00, T:0.48
Consensus pattern (12 bp):
TTTTCACTCACT
Found at i:24983638 original size:55 final size:54
Alignment explanation
Indices: 24983551--24983805 Score: 262
Period size: 55 Copynumber: 4.8 Consensus size: 54
24983541 ATTAGGGTTT
*
24983551 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
24983606 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* *
24983661 AAAGG-TCCCATGTAAGACCATGCCAATG-CATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAA-GACATGGCAATTGGTAAGTTTC-TAAGGC
*
24983714 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
24983763 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
24983806 GTACCCATGT
Statistics
Matches: 171, Mismatches: 19, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
48 2 0.01
49 37 0.22
52 8 0.05
53 40 0.23
54 12 0.07
55 67 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Done.