Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 82 of 253
Found at i:24983757 original size:108 final size:110
Alignment explanation
Indices: 24983558--24983758 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
24983548 TTTAAGGATA
*
24983558 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
24983623 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
24983668 CCATGTAAGACCATGCCAATGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
24983730 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
24983759 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:24983899 original size:23 final size:24
Alignment explanation
Indices: 24983873--24983917 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
24983863 AAGATAAGGT
*
24983873 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
24983896 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
24983918 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:24984017 original size:16 final size:16
Alignment explanation
Indices: 24983996--24984026 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24983986 ATAAATCTGA
24983996 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
24984012 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
24984027 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:24985553 original size:15 final size:15
Alignment explanation
Indices: 24985533--24985565 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24985523 ATAATACTTG
*
24985533 AATTTCATGAAGTAA
1 AATTTCACGAAGTAA
24985548 AATTTCACGAAGTAA
1 AATTTCACGAAGTAA
24985563 AAT
1 AAT
24985566 AAGAAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (15 bp):
AATTTCACGAAGTAA
Found at i:24988418 original size:20 final size:20
Alignment explanation
Indices: 24988387--24988432 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
24988377 TAGCATTTAT
24988387 CTCATG-AACTTAGACTCAA
1 CTCATGAAACTTAGACTCAA
24988406 CTCATGAAACTTAGACTCAA
1 CTCATGAAACTTAGACTCAA
24988426 CTCATGA
1 CTCATGA
24988433 GTTCAGACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (20 bp):
CTCATGAAACTTAGACTCAA
Found at i:24988556 original size:36 final size:36
Alignment explanation
Indices: 24988509--24988582 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
24988499 GCTTCATATC
24988509 TAATCGAATAGCATCGCATATGCTCACACTGTAATT
1 TAATCGAATAGCATCGCATATGCTCACACTGTAATT
*
24988545 TAATCGAATAGCATCGCATATGTTCACACTGTAATT
1 TAATCGAATAGCATCGCATATGCTCACACTGTAATT
24988581 TA
1 TA
24988583 CTCGCATAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (36 bp):
TAATCGAATAGCATCGCATATGCTCACACTGTAATT
Found at i:24991838 original size:40 final size:40
Alignment explanation
Indices: 24991662--24991884 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
24991652 TCCTCGTTCA
* * * * *
24991662 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
24991701 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
24991741 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24991781 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
24991821 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
24991861 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24991885 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24995563 original size:27 final size:28
Alignment explanation
Indices: 24995525--24995597 Score: 105
Period size: 27 Copynumber: 2.6 Consensus size: 28
24995515 GTTCAAATTG
*
24995525 TATAGCACTAAGTGTGCGAGGT-GATTA
1 TATAGCACTAAGTGTGCGAGGTCGACTA
*
24995552 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGGTCGACTA
24995580 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
24995598 GGCTTATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
27 22 0.52
28 20 0.48
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGGTCGACTA
Found at i:25004013 original size:28 final size:27
Alignment explanation
Indices: 25003980--25004080 Score: 87
Period size: 28 Copynumber: 3.6 Consensus size: 27
25003970 CATGAGATTG
25003980 GCACTAAGTGTGCGGGGTTCAATTGTAT
1 GCACTAAGTGTGCGGGGTTCAATT-TAT
* * *
25004008 GCACTAAGTGTGCGAGGCT-GATTATAT
1 GCACTAAGTGTGCGGGGTTCAATT-TAT
* * * *
25004035 AGCACTAAGTGTGCCGAGTTCGACTATTAA
1 -GCACTAAGTGTGCGGGGTTC-AAT-TTAT
25004065 GCACTAAGTGTGCGGG
1 GCACTAAGTGTGCGGG
25004081 CTTATTATAC
Statistics
Matches: 56, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
27 6 0.11
28 32 0.57
29 14 0.25
30 3 0.05
31 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGGGGTTCAATTTAT
Found at i:25023287 original size:33 final size:33
Alignment explanation
Indices: 25023245--25023310 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
25023235 ATATGACCAA
25023245 GAAATTTGACTTCTTGAAGCCAAAACTCACTCT
1 GAAATTTGACTTCTTGAAGCCAAAACTCACTCT
25023278 GAAATTTGACTTCTTGAAGCCAAAACTCACTCT
1 GAAATTTGACTTCTTGAAGCCAAAACTCACTCT
25023311 TGCCAAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (33 bp):
GAAATTTGACTTCTTGAAGCCAAAACTCACTCT
Found at i:25041983 original size:28 final size:28
Alignment explanation
Indices: 25041918--25042070 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
25041908 CTATATACGA
*
25041918 CACTTAGTGTGCAAGACATTGAGTA-GG
1 CACTTAGTGTGCGAGACATTGAGTATGG
25041945 CACTTAGTGTGCGAGACATTGAGTATGG
1 CACTTAGTGTGCGAGACATTGAGTATGG
*
25041973 CACTTAGTGTGTGAGACATTGAGTATGG
1 CACTTAGTGTGCGAGACATTGAGTATGG
* * * *
25042001 TACTTAGTGTGTGAGACATTGAATATGA
1 CACTTAGTGTGCGAGACATTGAGTATGG
25042029 CACTTAGTGTGCGAGACATTTG-GTATGG
1 CACTTAGTGTGCGAGACA-TTGAGTATGG
*
25042057 AACTTAGTGTGCGA
1 CACTTAGTGTGCGA
25042071 AATATCGAGT
Statistics
Matches: 114, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.21
28 87 0.76
29 3 0.03
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAGACATTGAGTATGG
Found at i:25047450 original size:47 final size:47
Alignment explanation
Indices: 25047380--25047509 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
25047370 TCAATTGATA
* * *
25047380 AGTACTTATACCATGGCCTATAGCCAAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCGG
* * *
25047427 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCGG
* * *
25047474 AATACCTATACCATGGCCCGTAGCCAAATGAAGGTA
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
25047510 TTATTTGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCGG
Found at i:25052951 original size:42 final size:41
Alignment explanation
Indices: 25052789--25052949 Score: 153
Period size: 42 Copynumber: 3.8 Consensus size: 41
25052779 ATACCAATGA
* * *
25052789 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACA-CGAAACTCATATCGATGC
* * * * **
25052831 CAATAGCCTAGCTATGGTCTTACATGATTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAACTCATATCGATGC
* * *
25052873 CATGTCCCAGACATGGTCTTACACAAAATCTCATAAT-GATGC
1 CATATCCCAGATATGGTCTTACACGAAA-CTCAT-ATCGATGC
*
25052915 CATATCCCATATATGGTCTTACACGTAAACTCATA
1 CATATCCCAGATATGGTCTTACACG-AAACTCATA
25052950 ATCCTAATGT
Statistics
Matches: 96, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
41 19 0.20
42 53 0.55
43 24 0.25
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACACGAAACTCATATCGATGC
Found at i:25062180 original size:37 final size:37
Alignment explanation
Indices: 25062130--25062245 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
25062120 TTATTACGAA
* * * *
25062130 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
25062167 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
25062204 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
25062241 GTCTT
1 GTCTT
25062246 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:25062538 original size:49 final size:47
Alignment explanation
Indices: 25062364--25062925 Score: 908
Period size: 47 Copynumber: 11.7 Consensus size: 47
25062354 CCCTTCGGGA
* * * * * *
25062364 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25062411 CCTGTCACATATATACACTTTCAGATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25062458 CATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25062505 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25062554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25062601 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25062650 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
25062697 CTTATCACATATATACACTTTCATGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25062744 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25062791 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25062840 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25062889 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
25062926 AGAATCCTAA
Statistics
Matches: 491, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
47 274 0.56
49 217 0.44
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25062561 original size:96 final size:96
Alignment explanation
Indices: 25062364--25062925 Score: 952
Period size: 96 Copynumber: 5.9 Consensus size: 96
25062354 CCCTTCGGGA
* * * * * * * *
25062364 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
25062427 ACTTTCAGATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25062458 CATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25062523 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
25062554 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25062619 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
25062650 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
**
25062713 ACTTTCATGTTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25062744 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
25062809 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25062840 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
25062905 ACACTTTCACATTCATCACAT
64 ACACTTTCACATTCATCACAT
25062926 AGAATCCTAA
Statistics
Matches: 444, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 137 0.31
96 233 0.52
98 74 0.17
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25068651 original size:42 final size:43
Alignment explanation
Indices: 25068561--25068709 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
25068551 TGCCAACATC
* * * * * *
25068561 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTC
1 CCAGATGTGGTCTTACACGAAAGCAAATATCGATGCCAATGTA
*
25068604 CCAGATAG-GGTCTTACACGAAAGCAAATAT-GATGCTAATGTA
1 CCAGAT-GTGGTCTTACACGAAAGCAAATATCGATGCCAATGTA
* * *
25068646 CCAGATGTGGTCTTACACGTAAATCATAA-GTCGATGCCAACGT-
1 CCAGATGTGGTCTTACACG-AAAGCA-AATATCGATGCCAATGTA
25068689 CCTAGATGTGGTCTTACACGA
1 CC-AGATGTGGTCTTACACGA
25068710 GAACACATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 33 0.37
44 29 0.33
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (43 bp):
CCAGATGTGGTCTTACACGAAAGCAAATATCGATGCCAATGTA
Found at i:25074262 original size:27 final size:26
Alignment explanation
Indices: 25074218--25074341 Score: 99
Period size: 27 Copynumber: 4.7 Consensus size: 26
25074208 TTAGTTTACC
* *
25074218 AAATTACTGAAATACCCCC-AGTTGTA
1 AAATTAC-CAAATACCCCCGATTTGTA
*
25074244 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCCCGATTTGTA
* **
25074271 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTA-CCAAATACCCCCGATTTGTA
***
25074298 AAATTACCAAAATACCATTGA-TTGTA
1 AAATTACC-AAATACCCCCGATTTGTA
*
25074324 AAATTACTGAAATACCCC
1 AAATTAC-CAAATACCCC
25074342 TGTAGGGTAG
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
25 3 0.04
26 35 0.43
27 38 0.47
28 5 0.06
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACCAAATACCCCCGATTTGTA
Found at i:25074322 original size:26 final size:26
Alignment explanation
Indices: 25074239--25074339 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
25074229 ATACCCCCAG
* **
25074239 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATA-CCTTGAT
* *
25074266 TTATAAAATTACCCAAATATCCTTGAT
1 TTGTAAAATTACCAAAATA-CCTTGAT
25074293 TTGTAAAATTACCAAAATACCATTGA-
1 TTGTAAAATTACCAAAATACC-TTGAT
**
25074319 TTGTAAAATTACTGAAATACC
1 TTGTAAAATTACCAAAATACC
25074340 CCTGTAGGGT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 21 0.33
27 42 0.67
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCTTGAT
Found at i:25074361 original size:27 final size:27
Alignment explanation
Indices: 25074325--25074486 Score: 225
Period size: 27 Copynumber: 6.0 Consensus size: 27
25074315 TTGATTGTAA
25074325 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
25074352 AATTAATGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
25074379 AATTACCGAAATACCCTTGTTGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
25074406 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
25074433 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
25074460 ATTTACTAAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
25074487 GACTACCGAT
Statistics
Matches: 116, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:25074391 original size:54 final size:54
Alignment explanation
Indices: 25074325--25074512 Score: 243
Period size: 54 Copynumber: 3.5 Consensus size: 54
25074315 TTGATTGTAA
* *
25074325 AATTACTGAAATACCCCTGTAGGGTAGAATTAATGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* *
25074379 AATTACCGAAATACCCTTGTTGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * * * *
25074433 AATTACCGAAATACCCTTGTAGGGTAGATTTACTAAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * **
25074487 GACTACCGATTTACCCCTAG-AGGGTA
1 AATTACCGAAATACCCCT-GTAGGGTA
25074513 AAATGACTAT
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
54 118 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
Found at i:25074432 original size:81 final size:80
Alignment explanation
Indices: 25074299--25074474 Score: 237
Period size: 81 Copynumber: 2.2 Consensus size: 80
25074289 TGATTTGTAA
* *
25074299 AATTACCAAAATACCATTGATTGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTAATGAAAT
1 AATTACCAAAATACCATTGATTGTAAAATTACTGAAATACCCCTGTAAGGTAGAATTAACGAAAT
25074364 ACCCCTGTAAGGTAG
66 ACCCCTGTAAGGTAG
* * * *
25074379 AATTACCGAAATACCCTTG-TTGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAA
1 AATTACCAAAATACCATTGATT--GTAAAATTACTGAAATACCCCTGTAAGGTAGAATTAACGAA
* *
25074443 ATACCCTTGTAGGGTAG
64 ATACCCCTGTAAGGTAG
* *
25074460 ATTTACTAAAATACC
1 AATTACCAAAATACC
25074475 TCTGTAGGGT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 2 0.02
80 17 0.20
81 64 0.77
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (80 bp):
AATTACCAAAATACCATTGATTGTAAAATTACTGAAATACCCCTGTAAGGTAGAATTAACGAAAT
ACCCCTGTAAGGTAG
Found at i:25074502 original size:81 final size:81
Alignment explanation
Indices: 25074299--25074504 Score: 209
Period size: 81 Copynumber: 2.6 Consensus size: 81
25074289 TGATTTGTAA
* ** * * * * *
25074299 AATTACCAAAATACCATTG-ATTGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTAATGAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAACTACCGAAATACCCCTGTAAGGTAGAATTAACGAAA
25074363 TACCCCTGTAAGGTAG
66 TACCCCTGTAAGGTAG
* * * * *
25074379 AATTACCGAAATACCCTTGTTGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAA
1 AATTACCAAAATACCCTTGTAGGGTAGAACTACCGAAATACCCCTGTAAGGTAGAATTAACGAAA
* *
25074444 TACCCTTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* * * **
25074460 ATTTACTAAAATA-CCTCTGTAGGGTAGGACTACCGATTTACCCCT
1 AATTACCAAAATACCCT-TGTAGGGTAGAACTACCGAAATACCCCT
25074505 AGAGGGTAAA
Statistics
Matches: 104, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 20 0.19
81 84 0.81
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGTAGGGTAGAACTACCGAAATACCCCTGTAAGGTAGAATTAACGAAA
TACCCCTGTAAGGTAG
Found at i:25076857 original size:39 final size:40
Alignment explanation
Indices: 25076756--25076947 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
25076746 TTGAATGATG
* * * *
25076756 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* *
25076795 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* *
25076836 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
25076875 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
25076914 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
25076948 AGCTATATCC
Statistics
Matches: 127, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 35 0.28
40 83 0.65
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:25076892 original size:79 final size:81
Alignment explanation
Indices: 25076756--25076940 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
25076746 TTGAATGATG
* *
25076756 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
25076820 TGTACGAGATACTA-A
66 TGTACGAGATACTATA
* * * **
25076835 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
25076897 ATTGTGCGAGTTACTATA
64 ATTGTACGAGATACTATA
* *
25076915 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25076941 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTACGAGATACTATA
Found at i:25076962 original size:79 final size:79
Alignment explanation
Indices: 25076809--25076973 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
25076799 GGACTAAGAT
* * **
25076809 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
25076874 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
25076888 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
25076951 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
25076967 CCGAAGG
1 CCGAAGG
25076974 TATGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:25080665 original size:11 final size:12
Alignment explanation
Indices: 25080630--25080665 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
25080620 GATCACATGG
25080630 CCGTGTCCCAAC
1 CCGTGTCCCAAC
25080642 CCGTGTCCCAAC
1 CCGTGTCCCAAC
25080654 CCGTGT-CCAAC
1 CCGTGTCCCAAC
25080665 C
1 C
25080666 TCATGTAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.17, C:0.50, G:0.17, T:0.17
Consensus pattern (12 bp):
CCGTGTCCCAAC
Found at i:25084358 original size:27 final size:27
Alignment explanation
Indices: 25084296--25084364 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
25084286 ACTTTTTCCT
*
25084296 CAAAGGCTTTT-TTTGATATTAAGCCA
1 CAAAGGCTTTTCTTTCATATTAAGCCA
* *
25084322 CAAAGGCTTTTCTTTCATTTTATGCCA
1 CAAAGGCTTTTCTTTCATATTAAGCCA
*
25084349 CAAAGACTTTTCTTTC
1 CAAAGGCTTTTCTTTC
25084365 CTGACATGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
26 11 0.29
27 27 0.71
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (27 bp):
CAAAGGCTTTTCTTTCATATTAAGCCA
Found at i:25091373 original size:27 final size:26
Alignment explanation
Indices: 25091343--25091442 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 26
25091333 GGTGGCTATA
*
25091343 CCACAATTATTTGATCTGGTCGCTCTG
1 CCACAATTATCTGATCTGGT-GCTCTG
*
25091370 CCACATATT-TCTGTTCTGGTGGCTCTG
1 CCACA-ATTATCTGATCTGGT-GCTCTG
*
25091397 CCACGATTATCTGTATCTGGTGACTCTG
1 CCACAATTATCTG-ATCTGGTG-CTCTG
* *
25091425 TCAC-ATTATCTGTTCTGG
1 CCACAATTATCTGATCTGG
25091443 CAGCCATGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
26 8 0.13
27 37 0.60
28 17 0.27
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (26 bp):
CCACAATTATCTGATCTGGTGCTCTG
Found at i:25091437 original size:54 final size:54
Alignment explanation
Indices: 25091331--25091442 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
25091321 AGGAAGCGTC
* *
25091331 CTGGTGGCTATACCACAATTATTTGATCTGGTCGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTCGCTCTGCCACATATATCTGTT
* * * *
25091385 CTGGTGGCTCTGCCACGATTATCTGTATCTGGT-GACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTCG-CTCTGCCACATATATCTGTT
25091439 CTGG
1 CTGG
25091443 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTCGCTCTGCCACATATATCTGTT
Found at i:25098356 original size:79 final size:79
Alignment explanation
Indices: 25098245--25098427 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 79
25098235 TACTCGTTCA
* *
25098245 AATGCCTTCGGGACATAGCCCGGTTATTGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGG-AATTGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
25098309 TTTAGTAAC-TCGCACC
64 TATAGTAACTTAGCA-C
* **
25098325 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCTCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATT-GTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
25098389 ATGGTCACTTAGCAC
65 ATAGTAACTTAGCAC
*
25098404 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
25098428 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 6 0.07
79 56 0.63
80 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGAATTGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:25098427 original size:40 final size:40
Alignment explanation
Indices: 25098224--25098427 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
25098214 CGGAATTTAA
** *
25098224 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
25098264 CCGGTTATTGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25098304 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25098343 CCGGA-ATTAGTAACTCTCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
25098383 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
25098423 CCGGA
1 CCGGA
25098428 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 92 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25102924 original size:37 final size:37
Alignment explanation
Indices: 25102865--25102966 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
25102855 ATCTCAGACG
*
25102865 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
25102902 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
25102939 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACATAGTCATCGGGTCTT
25102967 TAGAGCTCGG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 1 0.02
37 60 0.98
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:25103163 original size:47 final size:47
Alignment explanation
Indices: 25103085--25103678 Score: 963
Period size: 47 Copynumber: 12.5 Consensus size: 47
25103075 CCCTTCGGGA
* * * * * *
25103085 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25103132 CCTGTCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25103179 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25103226 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAGTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25103275 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25103322 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25103369 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25103418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25103465 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25103514 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25103561 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25103608 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25103657 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
25103679 CAATGAATAA
Statistics
Matches: 515, Mismatches: 24, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 332 0.64
49 183 0.36
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25103282 original size:96 final size:94
Alignment explanation
Indices: 25103085--25103678 Score: 963
Period size: 96 Copynumber: 6.2 Consensus size: 94
25103075 CCCTTCGGGA
* * * * * * * *
25103085 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
25103150 TTTCACATTCATCACGTCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
25103179 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
25103244 ACTTTCACATTCATCACATCGGCCAGTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
25103275 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGACCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
25103340 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
25103369 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25103434 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
25103465 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
25103530 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
25103561 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
25103626 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
25103657 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
25103679 CAATGAATAA
Statistics
Matches: 475, Mismatches: 19, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
94 138 0.29
96 337 0.71
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:25103354 original size:143 final size:144
Alignment explanation
Indices: 25103085--25103678 Score: 970
Period size: 143 Copynumber: 4.2 Consensus size: 144
25103075 CCCTTCGGGA
* * * * * * *
25103085 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
25103148 ACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
25103212 ATCGGCCATTAGGC
131 ATCGGCCATTAGGC
*
25103226 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAGTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
25103291 ACTTTCACATTCATCACATCGGCTATTAGACCTTATCAC-ATATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
25103355 ATCGGCCATTAGGC
131 ATCGGCCATTAGGC
* *
25103369 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25103434 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
* *
25103499 CGTCGGCTATTAGGC
130 CATCGGCCATTAGGC
*
25103514 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25103577 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCA
25103642 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
25103657 CTTATCAC--ATATATACACTTTC
1 CTTATCACATATATATACACTTTC
25103679 CAATGAATAA
Statistics
Matches: 429, Mismatches: 20, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
141 10 0.02
142 1 0.00
143 373 0.87
145 45 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (144 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:25114852 original size:43 final size:41
Alignment explanation
Indices: 25114720--25114857 Score: 104
Period size: 43 Copynumber: 3.3 Consensus size: 41
25114710 CGTCCTAGAC
* * * *
25114720 GTGGTCATACATGTAATCACATATAGATGCCACAGTCCCAAGCA
1 GTGGTCTTACACGTAATCAAATATCGATGCCAC-GTCCCAA--A
* * *
25114764 G-GGTCTTACACG-AATCAAATA-CAATGTCGATGTCCCAGACA
1 GTGGTCTTACACGTAATCAAATATCGATG-CCACGTCCCA-A-A
*
25114805 -TGGTCTTACACGTAATCATATATCGATGCCAACGTCCCAAA
1 GTGGTCTTACACGTAATCAAATATCGATGCC-ACGTCCCAAA
25114846 TGTGGTCTTACA
1 -GTGGTCTTACA
25114858 TGAGAACACA
Statistics
Matches: 75, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
41 23 0.31
42 21 0.28
43 30 0.40
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (41 bp):
GTGGTCTTACACGTAATCAAATATCGATGCCACGTCCCAAA
Found at i:25121223 original size:25 final size:25
Alignment explanation
Indices: 25121193--25121249 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
25121183 AATCAAAATG
* *
25121193 AGAATCATAATTAAAATCAGGTGAC
1 AGAATCAAAATTAAAATCAGGTAAC
** *
25121218 AGAATCAAAATTAGTATCAGGTAAT
1 AGAATCAAAATTAAAATCAGGTAAC
25121243 AGAATCA
1 AGAATCA
25121250 GAATCAGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.25
Consensus pattern (25 bp):
AGAATCAAAATTAAAATCAGGTAAC
Found at i:25121422 original size:27 final size:26
Alignment explanation
Indices: 25121379--25121462 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
25121369 AGCATGGCTG
*
25121379 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
25121405 CTAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
25121432 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
25121459 CCAG
1 CCAG
25121463 CACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
26 11 0.22
27 40 0.78
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:25121715 original size:27 final size:27
Alignment explanation
Indices: 25121684--25121817 Score: 117
Period size: 27 Copynumber: 5.0 Consensus size: 27
25121674 TGGTAATTTT
* *
25121684 TACCCCACAAGGGTATCTCGATAATTC
1 TACCCTACAAGGGTATTTCGATAATTC
* * * *
25121711 TACCCTGCAGGGGTATTTCAATATTTC
1 TACCCTACAAGGGTATTTCGATAATTC
*
25121738 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAAGGGTATTTCGATAATTC
** * * *
25121765 TACCCTGTAGGGGTATTT-TAGTAACTC
1 TACCCTACAAGGGTATTTCGA-TAATTC
* * *
25121792 TACCCCACAGGGGTATTTCAATAATT
1 TACCCTACAAGGGTATTTCGATAATT
25121818 TTGTAAATCG
Statistics
Matches: 83, Mismatches: 22, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
27 82 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGATAATTC
Found at i:25121751 original size:54 final size:54
Alignment explanation
Indices: 25121679--25121817 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
25121669 CAAAATGGTA
*
25121679 ATTTTTACCCCACAAGGGTATCTCGATAATTCTACCCTGCAGGGGTATTTCAAT
1 ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTGCAGGGGTATTTCAAT
* * * * * *
25121733 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTGTAGGGGTATTTTAGT
1 ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTGCAGGGGTATTTCAAT
** * * *
25121787 AACTCTACCCCACAGGGGTATTTCAATAATT
1 ATTTCTACCCCACAAGGGTATCTCGATAATT
25121818 TTGTAAATCG
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (54 bp):
ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTGCAGGGGTATTTCAAT
Found at i:25121832 original size:27 final size:26
Alignment explanation
Indices: 25121802--25121899 Score: 70
Period size: 27 Copynumber: 3.6 Consensus size: 26
25121792 TACCCCACAG
*
25121802 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AATAATTTTATAAATCGA
** * *
25121829 GGGTAAAATGATAATTCTATAAATCGA
1 GGGT-ATTTAATAATTTTATAAATCGA
** * *
25121856 GGGTACTTTGTTAATTTTACAAGTCGA
1 GGGTA-TTTAATAATTTTATAAATCGA
*
25121883 GGGTATTTCAGTAATTT
1 GGGTATTT-AATAATTT
25121900 GGTAAACTAA
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
26 4 0.07
27 49 0.89
28 2 0.04
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTAATAATTTTATAAATCGA
Found at i:25129367 original size:47 final size:47
Alignment explanation
Indices: 25129315--25129723 Score: 624
Period size: 47 Copynumber: 8.6 Consensus size: 47
25129305 GATAATTGTG
* *
25129315 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25129362 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25129411 ATGTGAAAGTGTATATATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25129462 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25129509 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25129558 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25129604 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
25129651 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
25129698 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
25129724 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 13, Indels: 21
0.91 0.03 0.06
Matches are distributed among these distances:
46 47 0.14
47 154 0.46
48 2 0.01
49 89 0.26
51 41 0.12
53 5 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:25129486 original size:147 final size:145
Alignment explanation
Indices: 25129315--25129712 Score: 628
Period size: 147 Copynumber: 2.8 Consensus size: 145
25129305 GATAATTGTG
* *
25129315 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-
*
25129380 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGTCT
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCT
25129445 AATGGCCGATGTGATGA
130 AATGG-CGATGTGATGA
25129462 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-
25129527 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCT
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCT
25129588 AATGGCGATGTGATGA
130 AATGGCGATGTGATGA
*
25129604 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-A
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAA
* * * * * *
25129668 TGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
66 TGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
25129713 AATGTGATAA
Statistics
Matches: 235, Mismatches: 11, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
139 2 0.01
140 33 0.14
142 73 0.31
143 23 0.10
147 104 0.44
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (145 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTA
ATGGCGATGTGATGA
Found at i:25132040 original size:43 final size:44
Alignment explanation
Indices: 25131993--25132224 Score: 207
Period size: 43 Copynumber: 5.5 Consensus size: 44
25131983 AATGCCAACA
* *
25131993 TCCCAAACGTGGTCTTACATGTAATCATATATCAATGCC-ACTG
1 TCCCAAACGTGGTCTTACATGTAATCAAATATCGATGCCGACTG
*
25132036 TCCCAAACAG-GGTCTTACACG-AATCAAATA-CGATGCCGA-TG
1 TCCCAAAC-GTGGTCTTACATGTAATCAAATATCGATGCCGACTG
* * ** * *
25132077 TCCCAGACATGGTCTTACACATAATCACATATCGGTGCC-ACTG
1 TCCCAAACGTGGTCTTACATGTAATCAAATATCGATGCCGACTG
*
25132120 TCCCAGACAG-GGTCTTACATG-AATCAAATAT-GATGCCGA-TG
1 TCCCAAAC-GTGGTCTTACATGTAATCAAATATCGATGCCGACTG
** * * * * * *
25132161 AACTAGACATGGTCTTACAGGTAATCACATATCGATGCCAAC-G
1 TCCCAAACGTGGTCTTACATGTAATCAAATATCGATGCCGACTG
25132204 TCCCAAACGTGGTCTTACATG
1 TCCCAAACGTGGTCTTACATG
25132225 AGAACACATA
Statistics
Matches: 151, Mismatches: 26, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
41 47 0.31
42 37 0.25
43 66 0.44
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
TCCCAAACGTGGTCTTACATGTAATCAAATATCGATGCCGACTG
Found at i:25132223 original size:84 final size:84
Alignment explanation
Indices: 25132002--25132225 Score: 308
Period size: 84 Copynumber: 2.7 Consensus size: 84
25131992 ATCCCAAACG
* * * *
25132002 TGGTCTTACATGTAATCATATATCAATGCCACTGTCCCAAACAGGGTCTTACACGAATCAAATAC
1 TGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAAACAGGGTCTTACATGAATCAAATAC
**
25132067 GATGCCGATGTCCCAGACA
66 GATGCCGATGAACCAGACA
* * * *
25132086 TGGTCTTACACATAATCACATATCGGTGCCACTGTCCCAGACAGGGTCTTACATGAATCAAATAT
1 TGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAAACAGGGTCTTACATGAATCAAATAC
*
25132151 GATGCCGATGAACTAGACA
66 GATGCCGATGAACCAGACA
*
25132170 TGGTCTTACAGGTAATCACATATCGATGCCAAC-GTCCCAAAC-GTGGTCTTACATGA
1 TGGTCTTACACGTAATCACATATCGATGCC-ACTGTCCCAAACAG-GGTCTTACATGA
25132226 GAACACATAG
Statistics
Matches: 123, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
83 1 0.01
84 120 0.98
85 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (84 bp):
TGGTCTTACACGTAATCACATATCGATGCCACTGTCCCAAACAGGGTCTTACATGAATCAAATAC
GATGCCGATGAACCAGACA
Found at i:25147485 original size:27 final size:27
Alignment explanation
Indices: 25147318--25147495 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
25147308 TAAATTGTAC
*
25147318 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
25147345 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
25147371 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
25147399 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
25147427 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
25147454 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
25147481 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25147496 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:25147486 original size:82 final size:81
Alignment explanation
Indices: 25147315--25147495 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
25147305 GATTAAATTG
* * * *
25147315 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25147380 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
25147396 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25147460 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
25147478 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25147496 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:25155490 original size:27 final size:27
Alignment explanation
Indices: 25155323--25155500 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
25155313 TAAATTGTAC
*
25155323 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
25155350 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
25155376 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
25155404 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
25155432 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
25155459 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
25155486 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25155501 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:25155491 original size:82 final size:81
Alignment explanation
Indices: 25155320--25155500 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
25155310 GATTAAATTG
* * * *
25155320 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25155385 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
25155401 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25155465 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
25155483 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25155501 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:25168756 original size:21 final size:20
Alignment explanation
Indices: 25168727--25168765 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
25168717 AACTATGAGT
*
25168727 TTTATGAAGTTTGATGTTAG
1 TTTATGAAGCTTGATGTTAG
25168747 TTTATGGAAGCTTGATGTT
1 TTTAT-GAAGCTTGATGTT
25168766 GGGTCATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.03, G:0.26, T:0.49
Consensus pattern (20 bp):
TTTATGAAGCTTGATGTTAG
Found at i:25169480 original size:43 final size:43
Alignment explanation
Indices: 25169345--25169517 Score: 147
Period size: 43 Copynumber: 4.0 Consensus size: 43
25169335 CGTAGGATCC
* * **
25169345 GATATGTGATATCATGTAAGACCACATTTGGGAC-GTTGGCATT
1 GATATTTGATTTCATGTAAGACCATGTTTGGGACAG-TGGCATT
* * * *
25169388 GACT-TATGATTTACATGTAAGACCATGTTTGGGACATTAGCATC
1 GA-TATTTGATTT-CATGTAAGACCATGTTTGGGACAGTGGCATT
* * *
25169432 G-TATTTGATTTCGTGTAAGACCCTGTTTGGGATAGTGGCATT
1 GATATTTGATTTCATGTAAGACCATGTTTGGGACAGTGGCATT
* * * *
25169474 GATATTTGACTACATGTAAGACCACGTCTGGGAC-GTTGGCATT
1 GATATTTGATTTCATGTAAGACCATGTTTGGGACAG-TGGCATT
25169517 G
1 G
25169518 TATGAGCTTT
Statistics
Matches: 103, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 28 0.27
43 48 0.47
44 27 0.26
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
GATATTTGATTTCATGTAAGACCATGTTTGGGACAGTGGCATT
Found at i:25171873 original size:33 final size:33
Alignment explanation
Indices: 25171831--25171896 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
25171821 TCCTAATCTA
25171831 TTCCTAAGGTTCAACGGGACTTTCCTCATTCGT
1 TTCCTAAGGTTCAACGGGACTTTCCTCATTCGT
*
25171864 TTCCTAAGGTTCAACGGGACTTTCCTCGTTCGT
1 TTCCTAAGGTTCAACGGGACTTTCCTCATTCGT
25171897 ACTCCTTTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (33 bp):
TTCCTAAGGTTCAACGGGACTTTCCTCATTCGT
Found at i:25174376 original size:41 final size:39
Alignment explanation
Indices: 25174326--25174441 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 39
25174316 AGAGCCTTCC
* *
25174326 ATAGCCGAAGCTATCTCAGTCTCGCACGCTAAGTGCTATAT
1 ATAG-CGAAGCTATCTCAAT-TCGCACACTAAGTGCTATAT
* *
25174367 ATAGTCGAAGCTAT-TCCAATTCGTACACTAAGTGCTTTAT
1 ATAG-CGAAGCTATCT-CAATTCGCACACTAAGTGCTATAT
* *
25174407 ATAGCTGAAGTTATCTCGATAT-GCACACTAAGTGC
1 ATAGC-GAAGCTATCTCAAT-TCGCACACTAAGTGC
25174442 CAAACATAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
39 1 0.02
40 44 0.70
41 18 0.29
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (39 bp):
ATAGCGAAGCTATCTCAATTCGCACACTAAGTGCTATAT
Found at i:25176212 original size:16 final size:17
Alignment explanation
Indices: 25176183--25176214 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
25176173 TTATAAACAC
25176183 ATATCAATTATTTCATT
1 ATATCAATTATTTCATT
25176200 ATATCAA-TATTTCAT
1 ATATCAATTATTTCAT
25176215 ATACCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATCAATTATTTCATT
Found at i:25177284 original size:49 final size:49
Alignment explanation
Indices: 25177226--25177415 Score: 218
Period size: 50 Copynumber: 3.8 Consensus size: 49
25177216 AAACTATCTA
* * * *
25177226 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAG
* *
25177275 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCAG
* * * * * *
25177325 ATACACGTAGTAGCCTACACTTAGTATTACACACGTGATCACAGTTTTCAG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCAG
* * *
25177376 GTACGCATTGTAGCCTGCACTTAGTACTACACATGTGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
25177416 GAGCTACATA
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 38 0.32
50 42 0.36
51 37 0.31
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAG
Found at i:25177414 original size:101 final size:99
Alignment explanation
Indices: 25177233--25177415 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 99
25177223 CTAGTACGCA
* * *
25177233 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
25177298 GTACTACACACGTGACCTAACTATCTGATACACG
66 GTACTACACACGTGACCTAACTATCTGATACACG
* * * * * *
25177332 TAGTAGCCTACACTTAGTATTACACACGTGATCACAGTTTTCAGGTACGCATTGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGCGA-C-CAATTATCAGGTACACATAGTAGCCTGCACT
*
25177397 TAGTACTACACATGTGACC
64 TAGTACTACACACGTGACC
25177416 GAGCTACATA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 27 0.38
100 1 0.01
101 44 0.61
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACTATCTGATACACG
Found at i:25178258 original size:30 final size:30
Alignment explanation
Indices: 25178222--25178282 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25178212 TCCTTAACTC
25178222 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
25178252 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
25178282 A
1 A
25178283 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:25181911 original size:51 final size:49
Alignment explanation
Indices: 25181740--25181917 Score: 212
Period size: 50 Copynumber: 3.6 Consensus size: 49
25181730 ATCTGATACG
* * *
25181740 CATACTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* * * * *
25181789 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACTATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACA
* * * * *
25181839 CATAGTAGCCTGCACTTAGTACTATACACGTGATCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACA
25181890 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
25181918 TGCGACCTAG
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 30 0.28
50 41 0.38
51 36 0.33
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:25181913 original size:101 final size:99
Alignment explanation
Indices: 25181726--25181917 Score: 276
Period size: 99 Copynumber: 1.9 Consensus size: 99
25181716 TATGTAGTGA
* * *
25181726 AACTATCTGATACGCATACTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACATACTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
25181791 TAGTAGCCTGCACTTAGTACTACACACATGACCT
66 TAGTAGCCTGCACTTAGTACTACACACATGACCT
* * * * * * *
25181825 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTATACACGTGATCACAGTTTTCGGGTACG
1 AACTATCTGATACACATACTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCCGGTACA
25181890 CATAGTAGCCTGCACTTAGTACTACACA
64 CATAGTAGCCTGCACTTAGTACTACACA
25181918 TGCGACCTAG
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 42 0.52
100 1 0.01
101 38 0.47
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (99 bp):
AACTATCTGATACACATACTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTACACACATGACCT
Found at i:25181925 original size:101 final size:99
Alignment explanation
Indices: 25181726--25181926 Score: 267
Period size: 101 Copynumber: 2.0 Consensus size: 99
25181716 TATGTAGTGA
* * *
25181726 AACTATCTGATACGCATACTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACATACTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
*
25181791 TAGTAGCCTGCACTTAGTACTACACACATGACCT
66 TAGTAGCCTGCACTTAGTACTACACACACGACCT
* * * * * * *
25181825 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTATACACGTGATCACAGTTTTCGGGTACG
1 AACTATCTGATACACATACTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCCGGTACA
**
25181890 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT
64 CATAGTAGCCTGCACTTAGTACTACACACACGACCT
25181926 A
1 A
25181927 GCTACATATA
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 42 0.48
100 1 0.01
101 44 0.51
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (99 bp):
AACTATCTGATACACATACTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTACACACACGACCT
Found at i:25182767 original size:30 final size:30
Alignment explanation
Indices: 25182731--25182791 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25182721 TCCTTAACTC
25182731 AAACTTTGGAAAATTTACAATTCTGCCCCT
1 AAACTTTGGAAAATTTACAATTCTGCCCCT
* * * * *
25182761 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTCTGCCCCT
25182791 A
1 A
25182792 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTCTGCCCCT
Found at i:25186736 original size:90 final size:90
Alignment explanation
Indices: 25186583--25186749 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 90
25186573 GAATGCCAAA
* * * * * *
25186583 GCCATGTCCCAGACATAGTCTTACATGGGTCTACCTATTGATGCCGTATCCTAGATATGGTCTTA
1 GCCATGTCCCAGACACAGTCTTACATGGGCCTACCTATCGATGCCATATCCCAGACATGGTCTTA
**
25186648 TATGAAATCTCAAGTCAGTGCCGAT
66 TACAAAATCTCAAGTCAGTGCCGAT
* *
25186673 GCCATGTCCCAGACACGGTCTTACATGGGACCT-CAC-ATCGATGCCATGTCCCAGACATGGTCT
1 GCCATGTCCCAGACACAGTCTTACATGGG-CCTAC-CTATCGATGCCATATCCCAGACATGGTCT
25186736 TATACAAAATCTCA
64 TATACAAAATCTCA
25186750 TATCAACGCC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
90 62 0.95
91 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (90 bp):
GCCATGTCCCAGACACAGTCTTACATGGGCCTACCTATCGATGCCATATCCCAGACATGGTCTTA
TACAAAATCTCAAGTCAGTGCCGAT
Found at i:25186788 original size:42 final size:42
Alignment explanation
Indices: 25186673--25186793 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
25186663 CAGTGCCGAT
* ** * * * *
25186673 GCCATGTCCCAGACACGGTCTTACATGGGACCTCACATCGAT
1 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAAC
* **
25186715 GCCATGTCCCAGACATGGTCTTATACAAAATCTCATATCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAAC
* * *
25186757 GCCATATCCCAGATATGGTCTTACATGAAATCACATA
1 GCCATGTCCCAGACATGGTCTTACATGAAATCTCATA
25186794 CCGGGGCCGA
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAAC
Found at i:25186840 original size:27 final size:27
Alignment explanation
Indices: 25186802--25186853 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
25186792 TACCGGGGCC
25186802 GATGCCATATCCCAAATATGGTCTTCG
1 GATGCCATATCCCAAATATGGTCTTCG
*
25186829 GATGCCATATCCCAGATATGGTCTT
1 GATGCCATATCCCAAATATGGTCTT
25186854 ACATTGGCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (27 bp):
GATGCCATATCCCAAATATGGTCTTCG
Found at i:25186880 original size:75 final size:75
Alignment explanation
Indices: 25186757--25186901 Score: 193
Period size: 75 Copynumber: 1.9 Consensus size: 75
25186747 TCATATCAAC
** *
25186757 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCGGGGCCGATGCCATATCCCAAATATG
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAGACCGATGCCATATCCCAAATATG
25186822 GTCTTCGGAT
66 GTCTTCGGAT
** * * * *
25186832 GCCATATCCCAGATATGGTCTTACATTGGCA-CACATATCAATACCGATGCCATGTCCTAAATAT
1 GCCATATCCCAGATATGGTCTTACA-TGAAATCACATACCAAGACCGATGCCATATCCCAAATAT
25186896 GGTCTT
65 GGTCTT
25186902 ACAGTGGCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
75 57 0.95
76 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (75 bp):
GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAGACCGATGCCATATCCCAAATATG
GTCTTCGGAT
Found at i:25186900 original size:48 final size:48
Alignment explanation
Indices: 25186829--25186958 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
25186819 ATGGTCTTCG
* * * *
25186829 GATGCCATATCCCAGATATGGTCTTACATTGGC-ACACATATCAATACC
1 GATGCCATGTCCCAAATATGGTCTTACAGTGGCTA-ACATATCAACACC
* * *
25186877 GATGCCATGTCCTAAATATGGTCTTACAGTGGCTATCATATCAACCCC
1 GATGCCATGTCCCAAATATGGTCTTACAGTGGCTAACATATCAACACC
* * * *
25186925 GATGCCATGTCCCAGACATAGTCTTACACTGGCT
1 GATGCCATGTCCCAAATATGGTCTTACAGTGGCT
25186959 CTCATTAATC
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
48 68 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAATATGGTCTTACAGTGGCTAACATATCAACACC
Found at i:25195468 original size:49 final size:49
Alignment explanation
Indices: 25195396--25196026 Score: 966
Period size: 47 Copynumber: 13.1 Consensus size: 49
25195386 GAAATGACAG
*
25195396 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
25195445 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
* *
25195496 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
25195543 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
25195590 TAATGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
25195637 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
**
25195684 TAAGTTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
25195733 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
25195782 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGA
25195833 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
25195882 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
25195929 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
25195976 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
25196023 TAAG
1 TAAG
25196027 TCCCGAAGGG
Statistics
Matches: 544, Mismatches: 30, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
47 268 0.49
48 1 0.00
49 178 0.33
51 97 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:25196201 original size:37 final size:37
Alignment explanation
Indices: 25196145--25196223 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25196135 CCGAGCTCTA
* * *
25196145 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25196182 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25196219 AAGAC
1 AAGAC
25196224 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25198502 original size:43 final size:43
Alignment explanation
Indices: 25198449--25198617 Score: 196
Period size: 43 Copynumber: 3.9 Consensus size: 43
25198439 CATAGAATTC
* * *
25198449 CGATATGTGATTTCGTGTAAGGCCATGTCTGGGACTTTGGCAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
* **
25198492 CGATTTGTGATTTGCATGTAAGACCATGTCTGGGACATCAGCAT
1 CGATATGTGATTT-CATGTAAGACCATGTCTGGGACATTGGCAT
* * * * *
25198536 CG-TATATGAGTTCGTGTAAGACCCTGTCTGGGACAATGGCAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
* * *
25198578 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGG
25198618 TATTGTACAA
Statistics
Matches: 102, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 27 0.26
43 48 0.47
44 27 0.26
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
CGATATGTGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
Found at i:25202232 original size:40 final size:40
Alignment explanation
Indices: 25202186--25202377 Score: 213
Period size: 40 Copynumber: 4.8 Consensus size: 40
25202176 ATAACCACAA
* *
25202186 GCACAAATGCCTTCTGGTCTTAGCCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * * * * *
25202226 GAACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * *
25202266 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * *
25202306 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* *
25202346 GCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
25202378 CATTCAAATG
Statistics
Matches: 121, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
Found at i:25202277 original size:80 final size:79
Alignment explanation
Indices: 25202157--25202377 Score: 300
Period size: 80 Copynumber: 2.8 Consensus size: 79
25202147 ACCCAAGTTT
* * * * * * *
25202157 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCTGGTCTTAGCCCGGATTTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
25202221 AACTCGAACAAATGC
65 AACTCGAACAAATGC
* *
25202236 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
*
25202301 AACTCGCACAAATGC
65 AACTCGAACAAATGC
* *
25202316 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
25202378 CATTCAAATG
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 113 0.90
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGAACAAATGC
Found at i:25204778 original size:24 final size:24
Alignment explanation
Indices: 25204746--25204815 Score: 122
Period size: 24 Copynumber: 2.9 Consensus size: 24
25204736 CTGTCAGGAG
25204746 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
25204770 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
25204794 AGGATTTAGGAGCTGATCAAGG
1 AGGATTTAGGAGTTGAT-AAGG
25204816 AACAAGAGGT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 40 0.91
25 4 0.09
ACGTcount: A:0.33, C:0.03, G:0.37, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:25206228 original size:27 final size:26
Alignment explanation
Indices: 25206198--25206310 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 26
25206188 AGGAAGCGTC
* *
25206198 CTGGTGGCTATACCACAATTCTCTGAT
1 CTGGTGGCTCTGCCACAATT-TCTGAT
*
25206225 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACA-ATTTCTGAT
*
25206252 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATT-TCTG-AT
* * *
25206280 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATT-TCTGAT
25206306 CTGGT
1 CTGGT
25206311 AGCCATGCTG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 9 0.12
27 48 0.64
28 18 0.24
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATTTCTGAT
Found at i:25206306 original size:54 final size:54
Alignment explanation
Indices: 25206198--25206310 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
25206188 AGGAAGCGTC
* * *
25206198 CTGGTGGCTATACCACAATTCTCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
25206252 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
25206306 CTGGT
1 CTGGT
25206311 AGCCATGCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:25209418 original size:12 final size:13
Alignment explanation
Indices: 25209390--25209422 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
25209380 TTATTTCTTT
25209390 TTCTCCATCTACC
1 TTCTCCATCTACC
*
25209403 TTCTCC-TCTTCC
1 TTCTCCATCTACC
25209415 TTCTCCAT
1 TTCTCCAT
25209423 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:25210521 original size:28 final size:28
Alignment explanation
Indices: 25210489--25210553 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
25210479 ATTTACTAGA
* *
25210489 ATACCCCTATTTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
25210517 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
25210545 ATACCCCTA
1 ATACCCCTA
25210554 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:25210717 original size:27 final size:28
Alignment explanation
Indices: 25210659--25210748 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
25210649 AGGAAGCGTC
*
25210659 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
25210687 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
25210714 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
25210743 CTGGTG
1 CTGGTG
25210749 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:25210759 original size:29 final size:28
Alignment explanation
Indices: 25210669--25210759 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
25210659 CTGGTGGCTA
* * *
25210669 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
25210697 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
25210724 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
25210753 TGTCACA
1 TGCCACA
25210760 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:25210767 original size:55 final size:56
Alignment explanation
Indices: 25210659--25210773 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
25210649 AGGAAGCGTC
* * *
25210659 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
25210714 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
25210770 CTGG
1 CTGG
25210774 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:25214894 original size:17 final size:18
Alignment explanation
Indices: 25214865--25214899 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
25214855 GTTTTGTTCG
*
25214865 GTTTTTGATGATTTTTAC
1 GTTTTTGATGATTGTTAC
25214883 GTTTTTGA-GATTGTTAC
1 GTTTTTGATGATTGTTAC
25214900 TTTGTGTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.06, G:0.20, T:0.57
Consensus pattern (18 bp):
GTTTTTGATGATTGTTAC
Found at i:25215772 original size:36 final size:34
Alignment explanation
Indices: 25215708--25215775 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 34
25215698 CATTGGCATC
*
25215708 GTATATGTGTTCGTGTAAAACCCTGTCTGGGATA
1 GTATATGTGTTCATGTAAAACCCTGTCTGGGATA
*
25215742 GTATATGTGATTACATGTAAGACCAC-GTCTGGGA
1 GTATATGTG-TT-CATGTAAAACC-CTGTCTGGGA
25215776 CATTGGTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 9 0.31
35 2 0.07
36 17 0.59
37 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (34 bp):
GTATATGTGTTCATGTAAAACCCTGTCTGGGATA
Found at i:25229191 original size:16 final size:16
Alignment explanation
Indices: 25229172--25229206 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
25229162 GGAAAGGCCA
* *
25229172 AAATGCTGAAAAGTTG
1 AAATGCCGAAAAGCTG
25229188 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCTG
25229204 AAA
1 AAA
25229207 GTTTGGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.23, T:0.17
Consensus pattern (16 bp):
AAATGCCGAAAAGCTG
Found at i:25230643 original size:27 final size:27
Alignment explanation
Indices: 25230612--25230694 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
25230602 ATTCGGCCTT
25230612 ATCACATACACATACACTTTCACATTC
1 ATCACATACACATACACTTTCACATTC
*** ** *
25230639 ATCACATTGGC---CA-TTTGGCCTT-
1 ATCACATACACATACACTTTCACATTC
*
25230661 ATCACATATACATACACTTTCACATTC
1 ATCACATACACATACACTTTCACATTC
25230688 ATCACAT
1 ATCACAT
25230695 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
22 8 0.21
23 6 0.15
24 2 0.05
25 2 0.05
26 6 0.15
27 15 0.38
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATACACATACACTTTCACATTC
Found at i:25230644 original size:49 final size:48
Alignment explanation
Indices: 25230433--25230786 Score: 556
Period size: 47 Copynumber: 7.4 Consensus size: 48
25230423 TATCACAGTT
* * * * *
25230433 ATACACTTCCAC-TTCCATCACATTGACCATTCGACCTTATCATAT-AT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAAC
*
25230480 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT-AC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAAC
25230527 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT-AC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAAC
25230574 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA-AC
*
25230623 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA-AC
25230672 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT-AC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAAC
* *
25230719 ATACAGTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA-AC
25230768 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
25230787 GTAACAAAAT
Statistics
Matches: 289, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 174 0.60
48 2 0.01
49 113 0.39
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (48 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAAC
Found at i:25230711 original size:145 final size:143
Alignment explanation
Indices: 25230433--25230786 Score: 588
Period size: 145 Copynumber: 2.5 Consensus size: 143
25230423 TATCACAGTT
* * * *
25230433 ATACACTTCCAC-TTCCATCACATTGACCATTCGACCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGACCTTATCACATATACATACACTTTCACATT
25230495 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
65 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
25230560 GCCTTATCACATAC
130 GCCTTATCACATAC
* *
25230574 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATACATACACTTTCACATTC
*
25230639 ATCACATTGGCCATTTGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTC
66 ATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTCATCACATTGGCCATTC
25230704 GGCCTTATCACATAC
129 GGCCTTATCACATAC
*
25230719 ATACAGTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATACATACACTTTCACATTC
25230784 ATC
66 ATC
25230787 GTAACAAAAT
Statistics
Matches: 198, Mismatches: 10, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
141 34 0.17
142 2 0.01
143 46 0.23
145 116 0.59
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (143 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGG
CCTTATCACATAC
Found at i:25233649 original size:29 final size:29
Alignment explanation
Indices: 25233568--25233719 Score: 159
Period size: 29 Copynumber: 5.3 Consensus size: 29
25233558 GTGAGCATGA
* *
25233568 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
* *
25233596 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
* *
25233624 ATATTAATGTGAATTGGGCCTGATGGGTC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
* * *
25233653 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
**
25233682 ATATAAATAAG-ATTGGGCCT-AGTGGGCC
1 ATATAAATGTGAATTGGGCCTGA-TGGGCC
*
25233710 ATATACATGT
1 ATATAAATGT
25233720 ATGTAGGGGT
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
27 1 0.01
28 48 0.48
29 52 0.51
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGAATTGGGCCTGATGGGCC
Found at i:25233707 original size:28 final size:29
Alignment explanation
Indices: 25233580--25233714 Score: 138
Period size: 28 Copynumber: 4.8 Consensus size: 29
25233570 ATAATGTGAT
*
25233580 TTGGGCC-GGATGGGCCATATAAATGAGA
1 TTGGGCCTAGATGGGCCATATAAATGAGA
* *
25233608 TTGGGCCTA-ATGGGCCATATTAATGTGAA
1 TTGGGCCTAGATGGGCCATATAAATGAG-A
* *
25233637 TTGGGCCT-GATGGGTCATATGAACGTGA-A
1 TTGGGCCTAGATGGGCCATAT-AA-ATGAGA
* *
25233666 TTGGGCC-GGATGGGCCATATAAATAAGA
1 TTGGGCCTAGATGGGCCATATAAATGAGA
25233694 TTGGGCCTAG-TGGGCCATATA
1 TTGGGCCTAGATGGGCCATATA
25233715 CATGTATGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 16
0.77 0.10 0.14
Matches are distributed among these distances:
27 2 0.02
28 44 0.50
29 39 0.44
30 1 0.01
31 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TTGGGCCTAGATGGGCCATATAAATGAGA
Found at i:25235932 original size:256 final size:256
Alignment explanation
Indices: 25235477--25235978 Score: 833
Period size: 256 Copynumber: 2.0 Consensus size: 256
25235467 GTCGCTGGGC
* *
25235477 CCAATAATGGCACAGGAAATTGGGGGTCCATTCTAGAGCGACTTCGATCAAATGGGGCTGAGATT
1 CCAATAATGGCACAGGAAATTGAGGGTCCATTCCAGAGCGACTTCGATCAAATGGGGCTGAGATT
* * *
25235542 TTTAAGGGCGTGGCTAGTGTGGCTTCTAACGTGGCTGAATATTGGTTGGAGGCCACGGAAAGGAT
66 TTTAAGGGCGTGGCTAGTGTGGCTCCTAACGTGGCTGAATATTGGTTGGAGGCCACAGAAAGGAC
* * *
25235607 AATGGAGGATCTGGACTGTTCACCTAAACAAAAACTGAAATGGGCAGTGTCACTGCTAAGGGAAG
131 AATGGAGGATCTAGACTGTTCACCTAAACAAAAACTAAAATGAGCAGTGTCACTGCTAAGGGAAG
*
25235672 AAGCTTACCAGTGGTGGCTGACAGTGAAAGAGGGCACTCAACCTGAGCAGGATTTTGGAGG
196 AAGCTTACCAGTGGTGGCTGACAATGAAAGAGGGCACTCAACCTGAGCAGGATTTTGGAGG
* * * * *
25235733 CCAATAATGGCACGGGAAATTTAGGGTCTATTCCGGAGCGACTTCGATCAAATGGGGTTGAGATT
1 CCAATAATGGCACAGGAAATTGAGGGTCCATTCCAGAGCGACTTCGATCAAATGGGGCTGAGATT
* *
25235798 TTTAAGGGCGTGGCTGGTGTGGCTCCTAATGTGGCTGAATATTGGTTGGAGGCCACAGAAAGGAC
66 TTTAAGGGCGTGGCTAGTGTGGCTCCTAACGTGGCTGAATATTGGTTGGAGGCCACAGAAAGGAC
* * *
25235863 AATGGAGGATCTAGACTGTTCACCTGAACAAAAAGTAAAATGAGCAGTGTCATTGCTAAGGGAAG
131 AATGGAGGATCTAGACTGTTCACCTAAACAAAAACTAAAATGAGCAGTGTCACTGCTAAGGGAAG
25235928 AAGCTTACCAGTGGTGGCTGACAATGAAAGAGGGCACTCAACCTGAGCAGG
196 AAGCTTACCAGTGGTGGCTGACAATGAAAGAGGGCACTCAACCTGAGCAGG
25235979 TCACTTGGGA
Statistics
Matches: 227, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
256 227 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (256 bp):
CCAATAATGGCACAGGAAATTGAGGGTCCATTCCAGAGCGACTTCGATCAAATGGGGCTGAGATT
TTTAAGGGCGTGGCTAGTGTGGCTCCTAACGTGGCTGAATATTGGTTGGAGGCCACAGAAAGGAC
AATGGAGGATCTAGACTGTTCACCTAAACAAAAACTAAAATGAGCAGTGTCACTGCTAAGGGAAG
AAGCTTACCAGTGGTGGCTGACAATGAAAGAGGGCACTCAACCTGAGCAGGATTTTGGAGG
Found at i:25241734 original size:29 final size:28
Alignment explanation
Indices: 25241653--25241804 Score: 137
Period size: 29 Copynumber: 5.4 Consensus size: 28
25241643 GTGAGCATGA
* *
25241653 ATAT-AATGTGATTTGGACTGGATGGGCC
1 ATATGAATGTGATTGGGCCT-GATGGGCC
* * *
25241681 ATATAAATGAGATTGGGCCTAATGGGCC
1 ATATGAATGTGATTGGGCCTGATGGGCC
*
25241709 ATATGAATGTGAATTGGGCCTGATGGGTC
1 ATATGAATGTG-ATTGGGCCTGATGGGCC
* * *
25241738 ATATGAACGTGAATTGGGTCGGATGGGCC
1 ATATGAATGTG-ATTGGGCCTGATGGGCC
* **
25241767 ATATAAATAAGATTGGGCCT-AGTGGGCC
1 ATATGAATGTGATTGGGCCTGA-TGGGCC
*
25241795 ATATGCATGT
1 ATATGAATGT
25241805 ATGTAGGGGT
Statistics
Matches: 99, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
27 1 0.01
28 39 0.39
29 59 0.60
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTGATGGGCC
Found at i:25247409 original size:52 final size:53
Alignment explanation
Indices: 25247322--25247467 Score: 165
Period size: 52 Copynumber: 2.8 Consensus size: 53
25247312 TACATCTATT
** * * * *
25247322 ACATCCATTATGAAC-TCGGACCAACTCAATAAGCTTGGTTTCCACTTGTATC
1 ACATCCATTATGAACTTCGGACCAACTCAACGAGCTTAGATGCCACGTGTATC
* *
25247374 ACATCCATGATG-ACTTCGAACCAACTCAACGAGCTTAGATGCCACGTGTATC
1 ACATCCATTATGAACTTCGGACCAACTCAACGAGCTTAGATGCCACGTGTATC
* *
25247426 GCATCTATTATGAACTT-GGACCAACTCAACGAG-TTAAGATGC
1 ACATCCATTATGAACTTCGGACCAACTCAACGAGCTT-AGATGC
25247468 TCGCATCCAT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
51 4 0.05
52 71 0.90
53 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (53 bp):
ACATCCATTATGAACTTCGGACCAACTCAACGAGCTTAGATGCCACGTGTATC
Found at i:25249531 original size:30 final size:30
Alignment explanation
Indices: 25249497--25249557 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
25249487 TTCCCGAGCC
25249497 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
25249527 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
25249557 T
1 T
25249558 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:25254733 original size:68 final size:67
Alignment explanation
Indices: 25254661--25254810 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
25254651 CATCATGTGT
* * * *
25254661 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
25254723 ATGTAG
62 ATGTAG
** * *
25254729 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
25254794 AG
66 AG
25254796 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
25254811 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:25254766 original size:64 final size:64
Alignment explanation
Indices: 25254685--25254868 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
25254675 AGACATTATG
* *
25254685 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
25254749 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
25254814 AA
63 AA
* * * *
25254816 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
25254869 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:25264520 original size:39 final size:39
Alignment explanation
Indices: 25264458--25264617 Score: 266
Period size: 39 Copynumber: 4.1 Consensus size: 39
25264448 AATTATATTA
*
25264458 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
**
25264497 CTTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
* *
25264536 CCAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
*
25264575 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATCCATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
25264614 CCAG
1 CCAG
25264618 TATCTTGCAT
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
Found at i:25266413 original size:40 final size:40
Alignment explanation
Indices: 25266357--25266512 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
25266347 TATTCAGATG
25266357 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
25266397 ATAACCAGGCTGAGTCCCGAAGGCATTTGT-CTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
25266437 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
25266477 ATAACCGGGCTAAGTCCCGAAGGCATCTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
25266513 AGCTATGTCT
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 104 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:25274429 original size:40 final size:40
Alignment explanation
Indices: 25274374--25274516 Score: 259
Period size: 40 Copynumber: 3.6 Consensus size: 40
25274364 TATTCGGATG
*
25274374 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
25274414 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
25274454 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
25274494 ATAATCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
25274517 TACTTGGTTG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:25286843 original size:40 final size:40
Alignment explanation
Indices: 25286702--25286882 Score: 203
Period size: 39 Copynumber: 4.6 Consensus size: 40
25286692 GAATGATGTT
* * * *
25286702 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT-
1 CGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATC
* * * *
25286741 CGGACTAAGAT--CGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGTGAGTTACTAAATC
25286780 CGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATC
*
25286819 CGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AATC
*
25286859 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
25286883 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 13 0.11
39 55 0.46
40 50 0.42
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATC
Found at i:25286904 original size:79 final size:79
Alignment explanation
Indices: 25286752--25286915 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 79
25286742 GGACTAAGAT
* ***
25286752 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
25286817 TCCGGGTTAAGTCC
66 TCCGGGTTAAATCC
* * *
25286831 CGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
25286894 ATATCC-GGTTAAATTC
63 AAATCCGGGTTAAATCC
25286910 CGAAGG
1 CGAAGG
25286916 TACGTGATTC
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAATCC
Found at i:25294445 original size:79 final size:81
Alignment explanation
Indices: 25294313--25294493 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 81
25294303 AATGATGTCC
*
25294313 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
*
25294377 CGAGATACTA-ATTCCG
66 CGAGATACTATA-ACCG
* * * **
25294393 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGT
*
25294455 GCGAGTTACTATAACCG
65 GCGAGATACTATAACCG
*
25294472 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
25294494 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGATACTATAACCG
Found at i:25294507 original size:40 final size:40
Alignment explanation
Indices: 25294313--25294493 Score: 210
Period size: 40 Copynumber: 4.5 Consensus size: 40
25294303 AATGATGTCC
* * * *
25294313 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
* * *
25294353 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCG
25294393 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
*
25294432 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
25294472 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
25294494 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:25294515 original size:79 final size:79
Alignment explanation
Indices: 25294362--25294526 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
25294352 GGACTAAGAT
* ** *
25294362 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
25294427 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
25294441 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
25294504 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
25294520 CCGAAGG
1 CCGAAGG
25294527 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:25297539 original size:38 final size:38
Alignment explanation
Indices: 25297488--25297604 Score: 164
Period size: 38 Copynumber: 3.1 Consensus size: 38
25297478 ATTATATTAC
*
25297488 AGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTCT
* **
25297526 AGCACGAAGCCTGCAGGACTTTAGCCCGGATATGTTTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATA-CATTCT
*
25297565 AGCACGAAGCCTGCGGGAC-TTAGCCTGGATACATTTCT
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACA-TTCT
25297603 AG
1 AG
25297605 TGTCTTGCAT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 47 0.68
39 22 0.32
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTCT
Found at i:25300425 original size:39 final size:39
Alignment explanation
Indices: 25300277--25300493 Score: 227
Period size: 39 Copynumber: 5.6 Consensus size: 39
25300267 GCTACTCGTT
*
25300277 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
25300317 CAAATGCCTTCGGACTTAACCCGGATTTAGTAA-TCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
*
25300355 CAAA-G-CTTC-GACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* *
25300391 CAAATGCCTTCGGATCTTAGTCCGGA-TTAGTAACTCGTA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
25300430 CAAATGCCTTCGGATCTTAGTCC--ATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25300469 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
25300494 CATCAATCAA
Statistics
Matches: 155, Mismatches: 11, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
35 21 0.14
36 13 0.08
37 3 0.02
38 31 0.20
39 64 0.41
40 23 0.15
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25421317 original size:46 final size:46
Alignment explanation
Indices: 25421250--25421422 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
25421240 AACCCGCCCC
*
25421250 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
25421296 TAAGTGAACTCGGGCTCAACTCAACGAGCTCAGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-ATTTGCATCCA
* * * * * *
25421344 TCA-CGAACTCGGACTCAATTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* *
25421389 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
25421423 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 2 0.02
46 59 0.57
47 23 0.22
48 2 0.02
49 3 0.03
50 6 0.06
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:25421441 original size:46 final size:45
Alignment explanation
Indices: 25421348--25421433 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
25421338 TACATCTCAC
* * *
25421348 GAACTCGGACTCAATTCAATGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAATGAGTTCGGA-ATGCGCAACCATAAGT
*
25421394 GAACTCGGACTCAACTCAATGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAATGAGTTCGGAATGCGCAACCAT
25421434 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAATGAGTTCGGAATGCGCAACCATAAGT
Found at i:25428251 original size:50 final size:49
Alignment explanation
Indices: 25427999--25428351 Score: 244
Period size: 46 Copynumber: 7.5 Consensus size: 49
25427989 TTTGTGTGCT
* ** * * *
25427999 AGTGTAAGA-CATGCCTGGGACAT-GCATCGGCC-ACATTGTGGGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGATTGCGAGAGTC
* * * **
25428045 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-AACGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGATTGCGAGAGTC
* *
25428092 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGGGA-TG-TA-AGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT--GGATTGCGAGAGTC
* * *
25428139 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CT--A-CGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGATTGCGA-GAGTC
25428183 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGGATATGCGAGAGGT-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-GGAT-TGCGAGA-GTC
* * * * *
25428233 AGTGTAAGACCATTTCTGGGACATGGCGTCGGCCTTGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGATTGCGAGAGTC
* * * * *
25428282 AGTGTAAGGCCATGTCTGGGACATGGAATC-GACTTGA-TG-GATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGATTGCGA-GAGTC
*
25428329 AATGTAAGACCATGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
25428352 CGTTTGAGGC
Statistics
Matches: 249, Mismatches: 37, Indels: 41
0.76 0.11 0.13
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
44 11 0.04
45 16 0.06
46 61 0.24
47 53 0.21
48 31 0.12
49 33 0.13
50 34 0.14
51 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGATTGCGAGAGTC
Found at i:25430966 original size:39 final size:41
Alignment explanation
Indices: 25430907--25430994 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 41
25430897 AAAAAACATT
*
25430907 AAAT-ATTAATAAAAAGCTAAAAGTAGA-AC-CTAAATTCGC
1 AAATCATTAATAAAAAACTAAAAGTA-ATACTCTAAATTCGC
* *
25430946 AAATCATTAA-AAAAAACTAAAAGTAATACTTTAAATTCTC
1 AAATCATTAATAAAAAACTAAAAGTAATACTCTAAATTCGC
25430986 AAATCATTA
1 AAATCATTA
25430995 TAATTAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 20 0.47
40 22 0.51
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (41 bp):
AAATCATTAATAAAAAACTAAAAGTAATACTCTAAATTCGC
Found at i:25431464 original size:19 final size:20
Alignment explanation
Indices: 25431422--25431490 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
25431412 ATTACAAAAT
25431422 AATTCAAAATAATTTTCAAA
1 AATTCAAAATAATTTTCAAA
*
25431442 AATTCAAAATAATTTT-TAA
1 AATTCAAAATAATTTTCAAA
*
25431461 AATTCAAAAT-ATTTACAAA
1 AATTCAAAATAATTTTCAAA
25431480 AATTCTAAAAT
1 AATTC-AAAAT
25431491 TTATACTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
18 4 0.09
19 19 0.43
20 21 0.48
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTCAAAATAATTTTCAAA
Found at i:25437891 original size:8 final size:8
Alignment explanation
Indices: 25437880--25437916 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
25437870 AAATATTTAA
25437880 AAAATTCT
1 AAAATTCT
*
25437888 AAAATACT
1 AAAATTCT
*
25437896 AAAATTTT
1 AAAATTCT
25437904 AAAATTCT
1 AAAATTCT
25437912 AAAAT
1 AAAAT
25437917 ATATAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (8 bp):
AAAATTCT
Found at i:25437932 original size:24 final size:24
Alignment explanation
Indices: 25437880--25437931 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
25437870 AAATATTTAA
*
25437880 AAAATTCTAAAATACTAAAATTTT
1 AAAATTCTAAAATACTAAAATTAT
25437904 AAAATTCTAAAATA-TATAAATATAT
1 AAAATTCTAAAATACTA-AAAT-TAT
25437929 AAA
1 AAA
25437932 TATAAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 2 0.08
24 18 0.72
25 5 0.20
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATTCTAAAATACTAAAATTAT
Found at i:25443484 original size:37 final size:37
Alignment explanation
Indices: 25443434--25443504 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
25443424 ACCTTTAGCT
* *
25443434 CAGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
25443471 CAGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTT
25443505 TAGAGCTCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:25443701 original size:47 final size:47
Alignment explanation
Indices: 25443623--25444123 Score: 867
Period size: 47 Copynumber: 10.6 Consensus size: 47
25443613 CCCTTCGGGA
* * * * * * *
25443623 CTTATCACATTTATACACTTTCATATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25443670 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25443717 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25443764 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25443811 CTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25443858 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25443907 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25443956 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25444003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25444050 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25444097 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25444124 ACCAACCCTT
Statistics
Matches: 437, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 342 0.78
49 95 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25444097 original size:239 final size:237
Alignment explanation
Indices: 25443623--25444123 Score: 866
Period size: 239 Copynumber: 2.1 Consensus size: 237
25443613 CCCTTCGGGA
* * * * * *
25443623 CTTATCACAT-T-TATACACTTTCATATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
25443686 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
25443751 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
25443816 CACATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25443858 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATAT
25443923 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
25443988 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
25444053 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25444097 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
25444124 ACCAACCCTT
Statistics
Matches: 252, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
235 10 0.04
236 1 0.00
237 55 0.22
239 186 0.74
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25444487 original size:40 final size:40
Alignment explanation
Indices: 25444348--25444490 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 40
25444338 GCTACTCGTT
* * *
25444348 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
25444388 CAAATGCCTTCAGGACTTAACCCGAATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * *
25444428 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCA
25444469 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
25444491 AGACATCATT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 73 0.85
41 10 0.12
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
Found at i:25450501 original size:16 final size:16
Alignment explanation
Indices: 25450480--25450511 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25450470 GTTGTAACGC
25450480 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
25450496 CCCAAAAGTCCCGAAA
1 CCCAAAAATCCCGAAA
25450512 TATTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.38, G:0.09, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:25452728 original size:39 final size:40
Alignment explanation
Indices: 25452628--25452812 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
25452618 TCGAATGATG
* * *
25452628 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
25452667 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25452708 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
25452747 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25452786 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25452813 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:25452834 original size:79 final size:79
Alignment explanation
Indices: 25452681--25452845 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
25452671 GGACTAAGAT
* **
25452681 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
25452746 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
25452760 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
25452823 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
25452839 CCGAAGG
1 CCGAAGG
25452846 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:25455410 original size:29 final size:28
Alignment explanation
Indices: 25455355--25455468 Score: 106
Period size: 28 Copynumber: 4.0 Consensus size: 28
25455345 GTGAGCATGA
* * *
25455355 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
25455383 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
25455412 ATATACAA-GTGGTTTAGGCC-AATGGGCC
1 ATATA-AATGT-GATTGGGCCTAATGGGCC
* * **
25455440 ATATGAATATGATTGGGTTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
25455468 A
1 A
25455469 AATACAGGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 7 0.10
28 33 0.47
29 27 0.39
30 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:25466796 original size:29 final size:30
Alignment explanation
Indices: 25466739--25466796 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
25466729 CTTTTGGAAA
* * *
25466739 TATTTACAAAAAGAGACATCTAATTTTTAT
1 TATTTACAAAAAGAGACAACCAAATTTTAT
25466769 TATTTACAAAAAGAG-CAACCAAATTTTA
1 TATTTACAAAAAGAGACAACCAAATTTTA
25466797 AAAATACTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGACAACCAAATTTTAT
Done.