Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 83 of 253
Found at i:25475850 original size:47 final size:47
Alignment explanation
Indices: 25475750--25476269 Score: 806
Period size: 47 Copynumber: 10.9 Consensus size: 47
25475740 TAGTATGGCG
* *
25475750 TAATGGCCGATGTGATGAATGTGAATGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25475799 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25475846 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25475893 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25475940 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25475989 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25476036 TAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * *
25476085 TAATAGCAGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25476132 TAATAGCCGATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
25476179 TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
25476226 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25476270 TCCCGAAGGG
Statistics
Matches: 440, Mismatches: 27, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 323 0.73
49 117 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25475928 original size:96 final size:95
Alignment explanation
Indices: 25475750--25476269 Score: 812
Period size: 96 Copynumber: 5.5 Consensus size: 95
25475740 TAGTATGGCG
* *
25475750 TAATGGCCGATGTGATGAATGTGAATGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
25475815 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
25475846 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25475910 AATGTGAAAGTGTATATATGTGATACGGCC
66 AATGTGAAAGTGTATATATGTGATAAGGCC
*
25475940 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
25476005 GAATGTGAAAGTGTATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
25476036 TAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATAGCAGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
25476101 GAATGTGAAAGTGTATATATGTGATGAGGCC
65 GAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25476132 TAATAGCCGATGTGATGAATGTGAAAGTG-TAAATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25476196 AATGTGAAAGTGTATGTATGTGACAGGGCC
66 AATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
25476226 GAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
25476270 TCCCGAAGGG
Statistics
Matches: 393, Mismatches: 29, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
94 185 0.47
96 208 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25476008 original size:143 final size:142
Alignment explanation
Indices: 25475750--25476267 Score: 810
Period size: 143 Copynumber: 3.6 Consensus size: 142
25475740 TAGTATGGCG
*
25475750 TAATGGCCGATGTGATGAATGTGAATGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
25475815 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65 GAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25475880 ATGTGATAAGGCC
130 ATGTGATAAGGCC
*
25475893 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATACGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATGGCCGATGTGATG
25475957 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 AATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
25476022 TATGTGATAAGGCC
129 TATGTGATAAGGCC
* * *
25476036 TAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-GAGGCCTAATAGCAGATGTGA
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAG-GGCCTAATGGCCGATGTGA
* *
25476100 TGAATGTGAAAGTGTATATATGTGAT-GAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAA
64 TGAATGTGAAAGTGTATATATGTGATAG-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
25476164 ATATGTGATAAGGCC
128 ATATGTGATAAGGCC
* * * * * *
25476179 TAATGGCCGATGTGATGAATGTGAAAGTG-TATGTATGTGACAGGGCCGAGTGGCCAACGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATGGCCGATGTGATG
* *
25476243 GATGTGAAAGTGTATAAATGTGATA
66 AATGTGAAAGTGTATATATGTGATA
25476268 AGTCCCGAAG
Statistics
Matches: 347, Mismatches: 20, Indels: 17
0.90 0.05 0.04
Matches are distributed among these distances:
141 93 0.27
142 2 0.01
143 209 0.60
145 43 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCC
Found at i:25476443 original size:37 final size:37
Alignment explanation
Indices: 25476387--25476465 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25476377 CCGAGCTCTA
* * *
25476387 AAGACCCGATGACTACGTGTGGAAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAAATTATGTCCAGGT
* *
25476424 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAAATTATGTCCAGGT
25476461 AAGAC
1 AAGAC
25476466 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAAATTATGTCCAGGT
Found at i:25483550 original size:37 final size:37
Alignment explanation
Indices: 25483500--25483570 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
25483490 ACCTTTAGCT
* *
25483500 CAGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
*
25483537 CAGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 CAGACAAAATCTCCACACGAAGTCATCGGGTCTT
25483571 TAGAGCTCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (37 bp):
CAGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:25483767 original size:47 final size:47
Alignment explanation
Indices: 25483689--25484285 Score: 996
Period size: 47 Copynumber: 12.6 Consensus size: 47
25483679 CCCTTCAGGA
* * * * * *
25483689 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
25483736 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25483783 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25483830 CTTATCCCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25483877 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25483924 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25483973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25484020 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25484069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25484116 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25484165 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25484212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25484259 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25484286 ACCAACCCTT
Statistics
Matches: 522, Mismatches: 22, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 384 0.74
49 138 0.26
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25483965 original size:96 final size:95
Alignment explanation
Indices: 25483689--25484285 Score: 1002
Period size: 96 Copynumber: 6.3 Consensus size: 95
25483679 CCCTTCAGGA
* * * * * * * *
25483689 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
* *
25483753 CTTTCACATTCATCACATCAGCCACTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* *
25483783 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC-CCATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
25483847 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
25483877 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
25483942 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25483973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
*
25484038 ACTTTCACATTCATCACATCGGCCATTAGGT
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25484069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
25484134 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
25484165 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
*
25484229 CTTTCACATTCATCACATCGGCCATTAGAC
66 CTTTCACATTCATCACATCGGCCATTAGGC
25484259 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25484286 ACCAACCCTT
Statistics
Matches: 482, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
93 1 0.00
94 198 0.41
95 1 0.00
96 282 0.59
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25483996 original size:143 final size:141
Alignment explanation
Indices: 25483689--25484285 Score: 996
Period size: 143 Copynumber: 4.2 Consensus size: 141
25483679 CCCTTCAGGA
* * * * * * * *
25483689 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
25483754 TTTCACATTCATCACATCAGCCACTAGGCCTTATCGCATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
25483819 GGCCATTAGGC
131 GGCCATTAGAC
*
25483830 CTTATCCCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
25483895 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
25483960 TCGGCCATTAGGC
129 TCGGCCATTAGAC
*
25483973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
25484038 ACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
25484103 TCGGCCATTAGAC
129 TCGGCCATTAGAC
25484116 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25484181 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
25484246 TCGGCCATTAGAC
129 TCGGCCATTAGAC
25484259 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25484286 ACCAACCCTT
Statistics
Matches: 432, Mismatches: 18, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
141 109 0.25
143 231 0.53
145 92 0.21
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGAC
Found at i:25484615 original size:40 final size:40
Alignment explanation
Indices: 25484510--25484652 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
25484500 GCTACTCGTT
*
25484510 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
25484550 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
25484590 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25484631 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
25484653 AGACATCATT
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 74 0.82
41 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25489111 original size:42 final size:42
Alignment explanation
Indices: 25489064--25489146 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
25489054 AAAGTGATAG
25489064 CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTACT
1 CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTACT
* * *
25489106 CTTATGCCTTAAGACAGTTGAAGCCGCATGGAAAGAATTAC
1 CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTAC
25489147 CCGACACACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (42 bp):
CTTATGCCTCAAGAAAGTTGAAGCCACATGGAAAGAATTACT
Found at i:25497298 original size:19 final size:21
Alignment explanation
Indices: 25497259--25497298 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25497249 GACTTGATGA
*
25497259 ATGAATTTGAATGACTTGTAT
1 ATGAATTTGAATGAATTGTAT
25497280 ATGAATTTG-AT-AATTGTAT
1 ATGAATTTGAATGAATTGTAT
25497299 GAGAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 2 0.11
21 9 0.50
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (21 bp):
ATGAATTTGAATGAATTGTAT
Found at i:25511935 original size:40 final size:40
Alignment explanation
Indices: 25511890--25512161 Score: 301
Period size: 40 Copynumber: 6.8 Consensus size: 40
25511880 TATAACCACA
****
25511890 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
25511930 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* ****
25511970 AGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
25512010 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
25512050 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
25512090 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
25512130 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
25512162 TCATTCAAAT
Statistics
Matches: 185, Mismatches: 47, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 185 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:25512008 original size:80 final size:80
Alignment explanation
Indices: 25511862--25512160 Score: 467
Period size: 80 Copynumber: 3.8 Consensus size: 80
25511852 ACCCAAGTTT
* * * *
25511862 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTGG
1 CTTCGG-ATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGG
25511925 TAACTCGCACAAATGC
65 TAACTCGCACAAATGC
25511941 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGT
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGT
25512006 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * * *
25512021 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGT
25512086 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * *
25512101 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT
25512161 ATCATTCAAA
Statistics
Matches: 204, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
78 2 0.01
79 10 0.05
80 192 0.94
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGGT
AACTCGCACAAATGC
Found at i:25520153 original size:40 final size:40
Alignment explanation
Indices: 25520031--25520328 Score: 277
Period size: 40 Copynumber: 7.5 Consensus size: 40
25520021 ACCCAAGTTT
* * *
25520031 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGC
1 CTTCGG-ATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *** * *
25520070 CTTCGGGTCTTAGCCCGGAT-TGGTAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *
25520109 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *** * *
25520149 CTTCGGGTCTTAGCCCGGAT-TTGTAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* *
25520188 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * * *
25520228 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGATCTTAGCCCGGATAAAATC-ACTAGCACAAATGC
*
25520268 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC-AATCGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAAT-GC
25520308 CTTCGGGA-CTTAGCCCGGATA
1 CTTC-GGATCTTAGCCCGGATA
25520329 TCATTCAAAT
Statistics
Matches: 206, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
38 1 0.00
39 78 0.38
40 122 0.59
41 5 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAAATGC
Found at i:25520286 original size:159 final size:157
Alignment explanation
Indices: 25520031--25520327 Score: 452
Period size: 159 Copynumber: 1.9 Consensus size: 157
25520021 ACCCAAGTTT
* * * *
25520031 CTTCGGAATTTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTGGTAA
1 CTTCGGAATTTAGCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATTAGCAA
* * *
25520096 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTA
66 CTCGCACAAATGCCTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGACTTA
25520161 GCCCGGATTTGTAACTCGCACAAATGC
131 GCCCGGATTTGTAACTCGCACAAATGC
* * * *
25520188 CTTCGG-ATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAG
1 CTTCGGAAT-TTAG-CCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGAT-TAG
*
25520252 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGAC
63 CAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGAC
25520317 TTAGCCCGGAT
128 TTAGCCCGGAT
25520328 ATCATTCAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
156 2 0.02
157 10 0.08
158 40 0.32
159 73 0.58
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (157 bp):
CTTCGGAATTTAGCCGGATAAAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATTAGCAA
CTCGCACAAATGCCTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGACTTA
GCCCGGATTTGTAACTCGCACAAATGC
Found at i:25520310 original size:80 final size:79
Alignment explanation
Indices: 25520031--25520327 Score: 445
Period size: 79 Copynumber: 3.8 Consensus size: 79
25520021 ACCCAAGTTT
* * * * *
25520031 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTGGT
1 CTTCGG-ATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGT
25520094 AACTCGCACAAATGC
65 AACTCGCACAAATGC
*
25520109 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTTGTA
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGTA
25520174 ACTCGCACAAATGC
66 ACTCGCACAAATGC
* * *
25520188 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT-TAGT
25520253 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * *
25520268 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATCGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGAT
25520328 ATCATTCAAA
Statistics
Matches: 201, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.01
78 10 0.05
79 118 0.59
80 71 0.35
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATTAGTA
ACTCGCACAAATGC
Found at i:25527679 original size:40 final size:40
Alignment explanation
Indices: 25527582--25527721 Score: 129
Period size: 40 Copynumber: 3.4 Consensus size: 40
25527572 CTATAAAATA
* * *
25527582 TCGCACACTTAGTGCCATCATATTAAACCAAAACTA-TCTCAAT
1 TCGCACACTTAGTGCTA-CATA-T-AGCCAAAGCTATTC-CAAT
* * **
25527625 ATCGCACACATAGTGTTACATATAGCTGAAGCTATTCCAAT
1 -TCGCACACTTAGTGCTACATATAGCCAAAGCTATTCCAAT
** * *
25527666 TCGCACACTTAGTGCTATTTATAGCCAAAGCTATTTCAAA
1 TCGCACACTTAGTGCTACATATAGCCAAAGCTATTCCAAT
25527706 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
25527722 GAACATAGTC
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
40 48 0.60
41 11 0.14
42 3 0.04
43 4 0.05
44 14 0.17
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (40 bp):
TCGCACACTTAGTGCTACATATAGCCAAAGCTATTCCAAT
Found at i:25529644 original size:33 final size:33
Alignment explanation
Indices: 25529602--25529666 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
25529592 AAGGAGAAAA
*
25529602 CTTCATTTCATTTTCTTTGTTTTTCCTTTATTT
1 CTTCATTTCATTTTCATTGTTTTTCCTTTATTT
25529635 CTTCATTTCATTTTCATTGTTTTTCCTTTATT
1 CTTCATTTCATTTTCATTGTTTTTCCTTTATT
25529667 CTTTTCAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.11, C:0.18, G:0.03, T:0.68
Consensus pattern (33 bp):
CTTCATTTCATTTTCATTGTTTTTCCTTTATTT
Found at i:25541554 original size:48 final size:47
Alignment explanation
Indices: 25541484--25541653 Score: 137
Period size: 48 Copynumber: 3.6 Consensus size: 47
25541474 TTGCAAAGAA
* *
25541484 TATGT-GAACTGTCAATGGATTGTATGTGTGAATTGTCTCTATGTAG
1 TATGTCGAACTGTCAATGTATTGTATGTGTGAATTGTCTCTATGAAG
* ** * * * *
25541530 TATGTACGAACTGTCATTGTATTGTATGCATGAGTTGCCTTTATAAAG
1 TATGT-CGAACTGTCAATGTATTGTATGTGTGAATTGTCTCTATGAAG
* * * **
25541578 AACATGT-GAACTGTTAATGTATTGTATGTGTGAACTGTCTCTGCGAAG
1 --TATGTCGAACTGTCAATGTATTGTATGTGTGAATTGTCTCTATGAAG
* * *
25541626 TATGTGCAAATTGTCATTGTATTGTATG
1 TATGT-CGAACTGTCAATGTATTGTATG
25541654 CATGAGCTAT
Statistics
Matches: 92, Mismatches: 26, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
46 9 0.10
48 79 0.86
50 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.40
Consensus pattern (47 bp):
TATGTCGAACTGTCAATGTATTGTATGTGTGAATTGTCTCTATGAAG
Found at i:25541674 original size:96 final size:96
Alignment explanation
Indices: 25541471--25541783 Score: 302
Period size: 96 Copynumber: 3.3 Consensus size: 96
25541461 ATATGTGAGT
* * * ** * *
25541471 TCTTTGCAAAGAATATGTGAACTGTCAATGGATTGTATGTGTGAATTGTCTCTATGTAGTATGTA
1 TCTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTGCGAAGTATGTG
* * *
25541536 CGAACTGTCATTGTATTGTATGCATGAGTTG
66 CAAACTGTCATTGTATTGTATGCATGAGCTA
* ** * * *
25541567 CCTTTATAAAGAACATGTGAACTGTTAATGTATTGTATGTGTGAACTGTCTCTGCGAAGTATGTG
1 TCTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTGCGAAGTATGTG
*
25541632 CAAATTGTCATTGTATTGTATGCATGAGCTA
66 CAAACTGTCATTGTATTGTATGCATGAGCTA
** * * * ** * *
25541663 TCTTTGCAAAGAATATGCAAATTGTAAATGAATTGTATATGTCAACTACCTCAGCGAAGCATGTG
1 TCTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTGCGAAGTATGTG
* * * * *
25541728 CAAACTATCACTATATTGTATACATGAACTA
66 CAAACTGTCATTGTATTGTATGCATGAGCTA
* * * * *
25541759 TATTGGTACAGAATATGCGAACTGT
1 TCTTTGCAAAGAATATGTGAACTGT
25541784 CATTGTTAAG
Statistics
Matches: 175, Mismatches: 42, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
96 175 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (96 bp):
TCTTTGCAAAGAATATGTGAACTGTAAATGAATTGTATGTGTGAACTGTCTCTGCGAAGTATGTG
CAAACTGTCATTGTATTGTATGCATGAGCTA
Found at i:25541682 original size:48 final size:48
Alignment explanation
Indices: 25541541--25541687 Score: 132
Period size: 48 Copynumber: 3.1 Consensus size: 48
25541531 ATGTACGAAC
* * ** * ** *
25541541 TGTCATTGTATTGTATGCATGAGTTGCCTTTATAAAGAACATGTGAAC
1 TGTCATTGTATTGTATGCATGAGCTGTCTTTGCAAAGAATATGCAAAT
* * ** * * * * *
25541589 TGTTAATGTATTGTATGTGTGAACTGTCTCTGCGAAGTATGTGCAAAT
1 TGTCATTGTATTGTATGCATGAGCTGTCTTTGCAAAGAATATGCAAAT
*
25541637 TGTCATTGTATTGTATGCATGAGCTATCTTTGCAAAGAATATGCAAAT
1 TGTCATTGTATTGTATGCATGAGCTGTCTTTGCAAAGAATATGCAAAT
25541685 TGT
1 TGT
25541688 AAATGAATTG
Statistics
Matches: 72, Mismatches: 27, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.39
Consensus pattern (48 bp):
TGTCATTGTATTGTATGCATGAGCTGTCTTTGCAAAGAATATGCAAAT
Found at i:25552084 original size:58 final size:59
Alignment explanation
Indices: 25552020--25552152 Score: 153
Period size: 62 Copynumber: 2.2 Consensus size: 59
25552010 ATCATTTTAA
* * *
25552020 TATTAAATTAATATAATACTTA-T-AAAATAAATATTAGATTAAATTTAATATGAAATCT
1 TATTAAATTAATATAATACTTACTAAAAATAAACATTAAAATAAATTTAATATGAAAT-T
* * * *
25552078 TATTAAATTAATAGAATATTTATCTACAAAATAAGCATTAAAATAAATTTAATATTAAATT
1 TATTAAATTAATATAATACTTA-CTA-AAAATAAACATTAAAATAAATTTAATATGAAATT
*
25552139 TATTAAAATAATAT
1 TATTAAATTAATAT
25552153 TATTTTTGAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
58 20 0.32
60 1 0.02
61 13 0.21
62 28 0.45
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (59 bp):
TATTAAATTAATATAATACTTACTAAAAATAAACATTAAAATAAATTTAATATGAAATT
Found at i:25554171 original size:26 final size:26
Alignment explanation
Indices: 25554135--25554187 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
25554125 TATGTTGGCC
25554135 TTTGGAAGGTTGTATAATTGAATGGT
1 TTTGGAAGGTTGTATAATTGAATGGT
25554161 TTTGGAAGGTTGTATAATTGAATGGT
1 TTTGGAAGGTTGTATAATTGAATGGT
25554187 T
1 T
25554188 GTGGCATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.43
Consensus pattern (26 bp):
TTTGGAAGGTTGTATAATTGAATGGT
Found at i:25554201 original size:26 final size:26
Alignment explanation
Indices: 25554137--25554201 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
25554127 TGTTGGCCTT
* *
25554137 TGGAAGGTTGTATAATTGAATGGTTT
1 TGGAAGGTGGTATAATTGAATGGTTG
*
25554163 TGGAAGGTTGTATAATTGAATGGTTG
1 TGGAAGGTGGTATAATTGAATGGTTG
* *
25554189 TGGCATGTGGTAT
1 TGGAAGGTGGTAT
25554202 TTGGTACATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.25, C:0.02, G:0.34, T:0.40
Consensus pattern (26 bp):
TGGAAGGTGGTATAATTGAATGGTTG
Found at i:25555880 original size:46 final size:46
Alignment explanation
Indices: 25555812--25555986 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
25555802 TGTAACCCGC
* * *
25555812 CCATAAGAGAACTCGGAATCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
25555858 CCATAAGTGAACTTGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* ** * * *
25555904 ACATATCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
25555951 CCATAAGTAAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
25555987 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 62 0.59
47 30 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:25555929 original size:93 final size:93
Alignment explanation
Indices: 25555820--25555991 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
25555810 GCCCATAAGA
* * * * *
25555820 GAACTCGGAATCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
25555885 CGAGCTCGGATGCCTAGTTACATATCTC
66 CGAGCTCGGATGCCTAGTTACATATCTC
* *
25555913 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
*
25555978 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
25555992 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTCAGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATATCTC
Found at i:25557422 original size:40 final size:40
Alignment explanation
Indices: 25557365--25557545 Score: 290
Period size: 40 Copynumber: 4.5 Consensus size: 40
25557355 TTGGCTCGGA
* * *
25557365 TATAACAACCAGCACGAATGCCTTTGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
* *
25557405 TATAATAACCCGTACGAATGCCTTCGGGACTTAACCTGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
25557445 TATAATAACCCGCACGAATGCCTTCGAGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
25557485 TATAATAACCCGCACGAATGCCTCCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
*
25557525 TATAATAACCCGCACAAATGC
1 TATAATAACCCGCACGAATGC
25557546 TATGCACATA
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:25565553 original size:40 final size:40
Alignment explanation
Indices: 25565509--25565677 Score: 293
Period size: 40 Copynumber: 4.2 Consensus size: 40
25565499 TAACAACCAT
*
25565509 CACGAATGCCTTCGGGACTTAACCTGGTTATAATAACCCG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
*
25565549 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
*
25565589 CACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
* *
25565629 TACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
25565669 CACGAATGC
1 CACGAATGC
25565678 TATGCACATA
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCG
Found at i:25571818 original size:26 final size:26
Alignment explanation
Indices: 25571789--25571842 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
25571779 TTATCGGGAG
25571789 TACACATCTTAAACTTAGTTCCATTT
1 TACACATCTTAAACTTAGTTCCATTT
*
25571815 TACACATCTTAAACTTAGTTTCATTT
1 TACACATCTTAAACTTAGTTCCATTT
25571841 TA
1 TA
25571843 GTCCTTAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.44
Consensus pattern (26 bp):
TACACATCTTAAACTTAGTTCCATTT
Found at i:25577494 original size:65 final size:63
Alignment explanation
Indices: 25577383--25577503 Score: 181
Period size: 65 Copynumber: 1.9 Consensus size: 63
25577373 GAGAATCATT
* *
25577383 AGAAAAGTTGGTGTTATTTTAGCATTTTATGTTGTTTTTAAGTATGTTTCATTTTCTCGCATAA
1 AGAAAAGTTGGTGTTATTTTAGCATTTTATGTTGATTTTAAATATGTTT-ATTTTCTCGCATAA
*
25577447 AGAATAAGTTGGTGTTATTTTGGCATTTTTATGTT-ATTTTAAATATGTTTATTTTCT
1 AGAA-AAGTTGGTGTTATTTTAGCA-TTTTATGTTGATTTTAAATATGTTTATTTTCT
25577504 TAATTCAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
64 11 0.21
65 32 0.62
66 9 0.17
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.53
Consensus pattern (63 bp):
AGAAAAGTTGGTGTTATTTTAGCATTTTATGTTGATTTTAAATATGTTTATTTTCTCGCATAA
Found at i:25590522 original size:14 final size:14
Alignment explanation
Indices: 25590503--25590530 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25590493 TGCTGCAAGA
25590503 ATGTTGGTCTAGTT
1 ATGTTGGTCTAGTT
25590517 ATGTTGGTCTAGTT
1 ATGTTGGTCTAGTT
25590531 TTTAACTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.29, T:0.50
Consensus pattern (14 bp):
ATGTTGGTCTAGTT
Found at i:25593871 original size:27 final size:27
Alignment explanation
Indices: 25593836--25593947 Score: 97
Period size: 27 Copynumber: 4.1 Consensus size: 27
25593826 AGCATGGCTG
*
25593836 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGTCA
25593862 CCAGATACAGATAATCGTGGCAGA-TCCA
1 CCAGATACAGATAAT-GTGGCAGAGT-CA
* * *
25593890 CCA-AAACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGTCA
* * *
25593917 CCAGAT-CAAATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGTCA
25593944 CCAG
1 CCAG
25593948 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
26 6 0.08
27 50 0.70
28 15 0.21
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGTCA
Found at i:25593936 original size:54 final size:54
Alignment explanation
Indices: 25593840--25593946 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
25593830 TGGCTGCCAG
* * * *
25593840 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGATCCACCAA
1 AACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAA
* * *
25593894 AACAGAAATATGTGGCAGAGCCACCAGAT-CAAATAATTGTGGCATAGCCACCA
1 AACAGAAA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCA
25593947 GGACGCTTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 27 0.60
55 18 0.40
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (54 bp):
AACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAA
Found at i:25595156 original size:24 final size:24
Alignment explanation
Indices: 25595129--25595199 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
25595119 CTAGATTTCC
**
25595129 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
25595153 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
25595177 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
25595200 CTCTTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:25598165 original size:17 final size:19
Alignment explanation
Indices: 25598145--25598182 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
25598135 CAGGGGAAGG
25598145 AAGAAAG-A-AAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
25598162 AAGAAAGAAGAAAAGAGAA
1 AAGAAAGAAGAAAAGAGAA
25598181 AA
1 AA
25598183 TTAATTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAGAAAAGAGAA
Found at i:25599201 original size:51 final size:52
Alignment explanation
Indices: 25599133--25599234 Score: 136
Period size: 51 Copynumber: 1.9 Consensus size: 52
25599123 GACTATTTCA
25599133 GATTCGTTCCGAAGAGGTAC-TCTGTACCTG-ACTGTTACTGTTACTGTTCTG
1 GATTCGTTCCGAAGAGGTACTTCTGTACC-GCACTGTTACTGTTACTGTTCTG
* * *
25599184 GATTTGTTCCGATGAGGTACTTTGTGTACCGCTACTGTTACTGTTACTGTT
1 GATTCGTTCCGAAGAGGTAC-TTCTGTACCGC-ACTGTTACTGTTACTGTT
25599235 ACACTTATGG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
51 18 0.41
52 1 0.02
53 7 0.16
54 18 0.41
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.40
Consensus pattern (52 bp):
GATTCGTTCCGAAGAGGTACTTCTGTACCGCACTGTTACTGTTACTGTTCTG
Found at i:25599425 original size:18 final size:18
Alignment explanation
Indices: 25599368--25599444 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
25599358 GACTGTCTGC
* *
25599368 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* * *
25599386 TACAGAATAAACGACTAA
1 TACTGAATAAATGACTAT
*
25599404 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
**
25599422 TACT-AATTAACCGACTAT
1 TACTGAA-TAAATGACTAT
25599440 TACTG
1 TACTG
25599445 TTGACTGACT
Statistics
Matches: 45, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
17 2 0.04
18 43 0.96
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:25604273 original size:40 final size:40
Alignment explanation
Indices: 25604192--25604412 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
25604182 AAACCAAGTA
** * *
25604192 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
25604231 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
25604271 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
25604311 CCTTTGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
25604351 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
25604391 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
25604413 CAATCCGAAT
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 26 0.16
40 140 0.84
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:25611477 original size:8 final size:8
Alignment explanation
Indices: 25611435--25611459 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25611425 ATAGAGACTA
25611435 AATAAAAT
1 AATAAAAT
25611443 AATAAAAT
1 AATAAAAT
25611451 AATAAAAT
1 AATAAAAT
25611459 A
1 A
25611460 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:25611767 original size:30 final size:30
Alignment explanation
Indices: 25611712--25611780 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
25611702 CACCCTTAAA
* * *
25611712 ATATTTTCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAA-TTTTC
25611743 ATATTTACACT-TTAATCCCTCAAATTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
25611772 AGTATTTAC
1 A-TATTTAC
25611781 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 6 0.18
30 18 0.53
31 10 0.29
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.48
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:25612709 original size:58 final size:57
Alignment explanation
Indices: 25612560--25612709 Score: 151
Period size: 57 Copynumber: 2.6 Consensus size: 57
25612550 ATCGTATAAG
* * * *
25612560 AGGATTACTAGTCCAGGCTAAATCCTTTATATAACGTATGCTCAAAAGAGTTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTATAACGTATACTCAAAAGAGTTTAATC
* * * *
25612617 AGGATTACCAGTCCAGGCTAAACCCTAATC-ATAACGTATACTCGAGAG-GTATTATATC
1 AGGATTACCAGTCCAGGCTAAATCCT-TTCTATAACGTATACTCAAAAGAGT-TTA-ATC
* * **
25612675 CGGATTACCCGTCTGGGCTAAATCCTTTCTATAAC
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTATAAC
25612710 AAGGTCAATA
Statistics
Matches: 75, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
56 2 0.03
57 44 0.59
58 29 0.39
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTCTATAACGTATACTCAAAAGAGTTTAATC
Found at i:25615646 original size:17 final size:19
Alignment explanation
Indices: 25615621--25615661 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
25615611 CAATTCAATA
25615621 TTTTTTAG-A-TTT-TATT
1 TTTTTTAGAATTTTCTATT
25615637 TTTTTCTAGAATTTTCTATT
1 TTTTT-TAGAATTTTCTATT
25615657 TTTTT
1 TTTTT
25615662 AATAATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.24
17 3 0.14
18 1 0.05
19 3 0.14
20 9 0.43
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTTTAGAATTTTCTATT
Found at i:25619084 original size:18 final size:18
Alignment explanation
Indices: 25619057--25619097 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
25619047 TCGCATAAAC
25619057 AAAA-TCTTTCATATTCA
1 AAAATTCTTTCATATTCA
25619074 AAAATTCTTTCATATTCA
1 AAAATTCTTTCATATTCA
*
25619092 GAAATT
1 AAAATT
25619098 AAGTACGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (18 bp):
AAAATTCTTTCATATTCA
Found at i:25623783 original size:276 final size:276
Alignment explanation
Indices: 25623284--25623841 Score: 870
Period size: 276 Copynumber: 2.0 Consensus size: 276
25623274 TGTTCCTTCT
* *
25623284 GATCCAAAGCTGCCAACAAATGATGCCAAAAAGTGATTTCCAGTTGTTAGGATCACAAGAAAAAT
1 GATCCTAAGCTGCCAACAAATGATGCCAAAAAGTGATTGCCAGTTGTTAGGATCACAAGAAAAAT
* * **
25623349 ATTGAAGGTTAGAGAGATTAATCTCGAACCATTTTGCCAACCCAATAGAGAAAGGCTCGCGTCTT
66 ATTGAAGGTTAGAGAGATTAATCTAGAACCACTTTGCCAACCCAATAGAGAAAAACTCGCGTCTT
* * *
25623414 TTTACAGCCTTAATCATTGAATGTCAAGTTGCTACAGTTGGGGTACACATACGCAGCACGTGATG
131 TTTACAGCCTTAATCATTGAATGTCAAGTTGCTACAGCTGGAGTACACATACGCAGCACATGATG
* *
25623479 AACGCTTACAAATAGGGTTCTACATATCTTACAACTTGAATCCGAGGTTAGGTGTCTTCTCACTC
196 AACGCTTACAAATAGGGTTCTACATATCTTACAACTTGAATCAGAGGTTAGGAGTCTTCTCACTC
*
25623544 GGTTCTCATTAGTAAG
261 AGTTCTCATTAGTAAG
** * *
25623560 GATCCTAAGCTGCCTGCAAATGATGCCAAAAGGTGATTGCCAGTT-TGTAGGATCACAAGCAAAA
1 GATCCTAAGCTGCCAACAAATGATGCCAAAAAGTGATTGCCAGTTGT-TAGGATCACAAGAAAAA
* *
25623624 TATTGAGGGTTAGAGAGATTAATCTAGAACCACTTTGCCAACCCAATAGAGAAAAACTCGTGT-T
65 TATTGAAGGTTAGAGAGATTAATCTAGAACCACTTTGCCAACCCAATAGAGAAAAACTCGCGTCT
*
25623688 TCTTTGCAGCCTTAATCATTGAATG-CGAAGTTGCTACAGCTGGAGTACACATACGCAGCACATG
130 T-TTTACAGCCTTAATCATTGAATGTC-AAGTTGCTACAGCTGGAGTACACATACGCAGCACATG
* *
25623752 ATGGACGCTTACAAATAGGGTTCTACATATCTTACAACTTGCATCAGAGGTTAGGAGTCTTCTCA
193 ATGAACGCTTACAAATAGGGTTCTACATATCTTACAACTTGAATCAGAGGTTAGGAGTCTTCTCA
*
25623817 CTCAGTTCTCATTATTAAG
258 CTCAGTTCTCATTAGTAAG
25623836 GATCCT
1 GATCCT
25623842 GTTTAAAAAA
Statistics
Matches: 257, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
275 4 0.02
276 253 0.98
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (276 bp):
GATCCTAAGCTGCCAACAAATGATGCCAAAAAGTGATTGCCAGTTGTTAGGATCACAAGAAAAAT
ATTGAAGGTTAGAGAGATTAATCTAGAACCACTTTGCCAACCCAATAGAGAAAAACTCGCGTCTT
TTTACAGCCTTAATCATTGAATGTCAAGTTGCTACAGCTGGAGTACACATACGCAGCACATGATG
AACGCTTACAAATAGGGTTCTACATATCTTACAACTTGAATCAGAGGTTAGGAGTCTTCTCACTC
AGTTCTCATTAGTAAG
Found at i:25625121 original size:22 final size:22
Alignment explanation
Indices: 25625095--25625157 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
25625085 ATATCTAAAC
* *
25625095 AATAACAACAAAATAGTAGTAA
1 AATAACAACAAAATGGTAGGAA
* * * *
25625117 TATAATAGCAAATTGGTAGGAA
1 AATAACAACAAAATGGTAGGAA
*
25625139 AACAACAACAAAATGGTAG
1 AATAACAACAAAATGGTAG
25625158 CTAAACAGCA
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.56, C:0.10, G:0.16, T:0.19
Consensus pattern (22 bp):
AATAACAACAAAATGGTAGGAA
Found at i:25625163 original size:22 final size:21
Alignment explanation
Indices: 25625098--25625172 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 21
25625088 TCTAAACAAT
* *
25625098 AACAACAAAATAGTAGTAATAT
1 AACAACAAAATGGTAGTAA-AC
* * * *
25625120 AATAGCAAATTGGTAGGAAAAC
1 AACAACAAAATGGTA-GTAAAC
25625142 AACAACAAAATGGTAGCTAAAC
1 AACAACAAAATGGTAG-TAAAC
*
25625164 AGCAACAAA
1 AACAACAAA
25625173 CAACAACAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 1 0.03
22 36 0.90
23 3 0.08
ACGTcount: A:0.56, C:0.13, G:0.15, T:0.16
Consensus pattern (21 bp):
AACAACAAAATGGTAGTAAAC
Found at i:25630711 original size:18 final size:19
Alignment explanation
Indices: 25630688--25630734 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 19
25630678 TATTTTTTTT
25630688 AGCTTTAC-TAAGTTCTTC
1 AGCTTTACGTAAGTTCTTC
25630706 AGCTTTATACGTTAAGTTCTTC
1 AGC-TT-TACG-TAAGTTCTTC
25630728 AGCTTTA
1 AGCTTTA
25630735 TACGTTCGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 2 0.08
20 5 0.20
21 2 0.08
22 13 0.52
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (19 bp):
AGCTTTACGTAAGTTCTTC
Found at i:25630721 original size:22 final size:22
Alignment explanation
Indices: 25630696--25630740 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
25630686 TTAGCTTTAC
25630696 TAAGTTCTTCAGCTTTATACGT
1 TAAGTTCTTCAGCTTTATACGT
25630718 TAAGTTCTTCAGCTTTATACGT
1 TAAGTTCTTCAGCTTTATACGT
25630740 T
1 T
25630741 CGATCTACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (22 bp):
TAAGTTCTTCAGCTTTATACGT
Found at i:25641870 original size:31 final size:31
Alignment explanation
Indices: 25641832--25641893 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
25641822 TAAAAAATTT
25641832 GAATAAAATCTTATTCATAACTATCTACTAA
1 GAATAAAATCTTATTCATAACTATCTACTAA
25641863 GAATAAAATCTTATTCATAACTATCTACTAA
1 GAATAAAATCTTATTCATAACTATCTACTAA
25641894 CTTAATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.35
Consensus pattern (31 bp):
GAATAAAATCTTATTCATAACTATCTACTAA
Found at i:25643090 original size:11 final size:11
Alignment explanation
Indices: 25643074--25643104 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
25643064 GTCTTGGAAA
25643074 AATAATAAAAT
1 AATAATAAAAT
25643085 AATAATAAAAT
1 AATAATAAAAT
25643096 AA-AATAAAA
1 AATAATAAAA
25643105 GCATAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:25644311 original size:15 final size:15
Alignment explanation
Indices: 25644271--25644326 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
25644261 GATAAACTAA
*
25644271 AAAAATTAAGTGATG
1 AAAAATTAAGTGTTG
**
25644286 AAAAAAAAAGTGTTG
1 AAAAATTAAGTGTTG
*
25644301 AAAAATTAAGTATTG
1 AAAAATTAAGTGTTG
*
25644316 AAAATTTAAGT
1 AAAAATTAAGT
25644327 ACATTTCACT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (15 bp):
AAAAATTAAGTGTTG
Found at i:25647816 original size:15 final size:15
Alignment explanation
Indices: 25647796--25647837 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
25647786 CTATTTAAAA
*
25647796 AATGATAGTAATAGT
1 AATGATAATAATAGT
*
25647811 AATGATAATAATATT
1 AATGATAATAATAGT
*
25647826 AATGGTAATAAT
1 AATGATAATAAT
25647838 GCGAGAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (15 bp):
AATGATAATAATAGT
Found at i:25647977 original size:3 final size:3
Alignment explanation
Indices: 25647958--25648278 Score: 184
Period size: 3 Copynumber: 108.3 Consensus size: 3
25647948 AATAGGTAAA
* * * * *
25647958 AAT AAT -AT AAT AGT AAT AAT AAC AAT -AT AAT AAT AGT AGT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
25648004 AAT AAA AAT AAT AGT AAT AAA AAT AGT AAT AAT AGT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
25648051 ATT TAT AAT AAT AAT AAT AATT AAT GAT AAT AAA AAT AAT AGCA- AAG
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT A--AT AAT
* * * *
25648098 AA- AAT AA- AGGT AA- AATT AAT AAT GAT ACT AACG AAT -AT AAGT AAT
1 AAT AAT AAT A-AT AAT AA-T AAT AAT AAT AAT AA-T AAT AAT AA-T AAT
*
25648143 AAT AGT AA- AAT AAT AAT AAT AAT AAT AAT AAT AA- AAGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* * * * * *
25648187 AAT AAT ACGT TA- AAT TAT AAT AGT AA- AAT AAC AAT AAT AGT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
25648231 AAT AAT -AT ATT AGAT AGT AAT AGT AA- AAT AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
25648275 AAT A
1 AAT A
25648279 TATTAAATTA
Statistics
Matches: 238, Mismatches: 56, Indels: 48
0.70 0.16 0.14
Matches are distributed among these distances:
2 25 0.11
3 195 0.82
4 17 0.07
5 1 0.00
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25648217 original size:44 final size:43
Alignment explanation
Indices: 25648158--25648278 Score: 136
Period size: 44 Copynumber: 2.7 Consensus size: 43
25648148 TAAAATAATA
* *
25648158 ATAATAATAATAATAATAAAAGTAATAATAATAATACGTTAAATT
1 ATAATAGTAA-AATAATAAAAGTAATAATAATAATACATTAAA-T
* * * *
25648203 ATAATAGTAAAATAACAATAA-TAGTAATAATAATATATTAGAT
1 ATAATAGTAAAATAATAA-AAGTAATAATAATAATACATTAAAT
*
25648246 AGTAATAGTAAAATAATAATAGTAATAATAATA
1 A-TAATAGTAAAATAATAAAAGTAATAATAATA
25648279 TATTAAATTA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
43 3 0.05
44 50 0.78
45 11 0.17
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (43 bp):
ATAATAGTAAAATAATAAAAGTAATAATAATAATACATTAAAT
Found at i:25648279 original size:41 final size:39
Alignment explanation
Indices: 25648137--25648284 Score: 143
Period size: 41 Copynumber: 3.5 Consensus size: 39
25648127 AACGAATATA
* * * * *
25648137 AGTAATAATAGTAAAATAATAATAATAATAATAATAATAAA
1 AGTAATAATAATATATTAAT-ATAATAGTAA-AATAATAAT
25648178 AGTAATAATAATAATACGTTAAATTATAATAGTAAAATAACAATAAT
1 AGTAATAATAAT-ATA--TT-AA-TATAATAGTAAAAT---AATAAT
25648225 AGTAATAATAATATATTAGATAGTAATAGTAAAATAATAAT
1 AGTAATAATAATATATTA-ATA-TAATAGTAAAATAATAAT
25648266 AGTAATAATAATATATTAA
1 AGTAATAATAATATATTAA
25648285 ATTAGTTAAT
Statistics
Matches: 92, Mismatches: 5, Indels: 21
0.78 0.04 0.18
Matches are distributed among these distances:
40 1 0.01
41 35 0.38
42 2 0.02
43 3 0.03
44 19 0.21
45 11 0.12
46 4 0.04
47 17 0.18
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.32
Consensus pattern (39 bp):
AGTAATAATAATATATTAATATAATAGTAAAATAATAAT
Found at i:25651379 original size:18 final size:17
Alignment explanation
Indices: 25651335--25651380 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
25651325 AGAATGACAG
*
25651335 TATAGTAATGGTAATAA
1 TATAGTAATAGTAATAA
*
25651352 TAATATTAATAGTAATAA
1 T-ATAGTAATAGTAATAA
25651370 TATAGGTAATA
1 TATA-GTAATA
25651381 ACTTAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (17 bp):
TATAGTAATAGTAATAA
Found at i:25651580 original size:2 final size:2
Alignment explanation
Indices: 25651568--25651606 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
25651558 AAGTACCATA
*
25651568 AT AT AT GAT AT AT AT AT -T AT AT AT AT TT AT AT AT AT AT A
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25651607 AAATAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:25653974 original size:44 final size:46
Alignment explanation
Indices: 25653921--25654167 Score: 174
Period size: 44 Copynumber: 5.6 Consensus size: 46
25653911 AAATTTGGCT
25653921 TGTTACCCTACTGCTTAGGGGGTTAAAGCTC-AT-CATCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCTATACATCTTCGATC
* * * * * * * *
25653965 TGTTTCCCTACTACTTAGGGTGAT-AAGATCTGTAGATCTTC-AGCC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCTATACATCTTCGA-TC
* * * * * * *
25654010 TGTTACCCTACTGCTTA-GGGATTTAAGGTCTGTAAAT-TTGGCT-
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCTATACATCTTCGATC
25654053 TGTTACCCTACTGCTTAGGGGGTTAAAGCTC-AT-CATCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCTATACATCTTCGATC
* * * * * * *
25654097 TATTTCCCTACTGCTTAGGGTGAT-AAGATCTATAGATCTTC-AGCC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCTATACATCTTCGA-TC
* * *
25654142 AGTTACCCTACTTCTTAGGGAGTTAA
1 TGTTACCCTACTGCTTAGGGGGTTAA
25654168 GGCTTGATGG
Statistics
Matches: 153, Mismatches: 38, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
42 2 0.01
43 32 0.21
44 60 0.39
45 58 0.38
46 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (46 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCTCTATACATCTTCGATC
Found at i:25654019 original size:45 final size:45
Alignment explanation
Indices: 25653964--25654161 Score: 165
Period size: 45 Copynumber: 4.5 Consensus size: 45
25653954 CATCTTCGAT
* *
25653964 CTGTTTCCCTACTACTTAGGGTGATAAGATCTGTAGATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGTGATAAGATCTGTAGATCTTCAGC
* * * *
25654009 CTGTTACCCTACTGCTTAGGGAT-TTAAGGTCTGTAAAT-TT-GGC
1 CTGTTACCCTACTGCTTAGGG-TGATAAGATCTGTAGATCTTCAGC
* * * * * * *
25654052 TTGTTACCCTACTGCTTAGGGGGTTAA-AGCT-CATCATCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGTGATAAGATCTGTA-GATCTTCAG-C
* * *
25654096 CTATTTCCCTACTGCTTAGGGTGATAAGATCTATAGATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGTGATAAGATCTGTAGATCTTCAGC
* *
25654141 CAGTTACCCTACTTCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
25654162 AGTTAAGGCT
Statistics
Matches: 118, Mismatches: 26, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 29 0.25
44 24 0.20
45 57 0.48
46 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (45 bp):
CTGTTACCCTACTGCTTAGGGTGATAAGATCTGTAGATCTTCAGC
Found at i:25654063 original size:132 final size:132
Alignment explanation
Indices: 25653857--25654169 Score: 493
Period size: 132 Copynumber: 2.4 Consensus size: 132
25653847 TCAGGGAGAC
* * * * * *
25653857 AAGATCTGTA-ATTTTTAGCCTATTACCCTACTATTTAGGGGGTTAATGGTTTGTAAATTTGGCT
1 AAGATCTGTAGATCTTCAGCCTGTTACCCTACTACTTAGGGAGTTAA-GGTCTGTAAATTTGGCT
*
25653921 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTACTTAGGGT
65 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCATCTTCGATCTATTTCCCTACTACTTAGGGT
25653986 GAT
130 GAT
* *
25653989 AAGATCTGTAGATCTTCAGCCTGTTACCCTACTGCTTAGGGATTTAAGGTCTGTAAATTTGGCTT
1 AAGATCTGTAGATCTTCAGCCTGTTACCCTACTACTTAGGGAGTTAAGGTCTGTAAATTTGGCTT
*
25654054 GTTACCCTACTGCTTAGGGGGTTAAAGCTCATCATCTTCGATCTATTTCCCTACTGCTTAGGGTG
66 GTTACCCTACTGCTTAGGGGGTTAAAGCTCATCATCTTCGATCTATTTCCCTACTACTTAGGGTG
25654119 AT
131 AT
* * *
25654121 AAGATCTATAGATCTTCAGCCAGTTACCCTACTTCTTAGGGAGTTAAGG
1 AAGATCTGTAGATCTTCAGCCTGTTACCCTACTACTTAGGGAGTTAAGG
25654170 CTTGATGGTT
Statistics
Matches: 166, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 137 0.83
133 29 0.17
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.37
Consensus pattern (132 bp):
AAGATCTGTAGATCTTCAGCCTGTTACCCTACTACTTAGGGAGTTAAGGTCTGTAAATTTGGCTT
GTTACCCTACTGCTTAGGGGGTTAAAGCTCATCATCTTCGATCTATTTCCCTACTACTTAGGGTG
AT
Found at i:25654377 original size:43 final size:43
Alignment explanation
Indices: 25654320--25654432 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
25654310 GCCTTCGATC
*
25654320 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACA
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACA
* * ** *
25654363 TGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGGCT
1 TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACA
* *
25654406 TGCTACCCTACTGCTTAGAGGGTTAAG
1 TGTTACCCTACTGCTTAGGGGGTTAAG
25654433 GCCTGTGAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (43 bp):
TGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACA
Found at i:25654433 original size:43 final size:42
Alignment explanation
Indices: 25654325--25654445 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
25654315 CGATCTGTTT
* *
25654325 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACATGTTA
1 CCCTACTGCTTA-GGGGTTAAGGTCTGTAAATTCAACATGCTA
** *
25654368 CCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGGCTTGCTA
1 CCCTACTGCTTAGGGG-TTAAGGTCTGTAAATTCAACATGCTA
* *
25654411 CCCTACTGCTTAGAGGGTTAAGGCCTGTGAATTCA
1 CCCTACTGCTTAG-GGGTTAAGGTCTGTAAATTCA
25654446 CCGATTCTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 4 0.06
43 61 0.90
44 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGGTCTGTAAATTCAACATGCTA
Found at i:25662433 original size:18 final size:18
Alignment explanation
Indices: 25662397--25662439 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
25662387 AGTGTGTATG
25662397 ATGCAATGTTGATGCATGA
1 ATGCAATG-TGATGCATGA
25662416 ATGCAATG-GATGCGATGA
1 ATGCAATGTGATGC-ATGA
25662434 ATGCAA
1 ATGCAA
25662440 AAAAGCATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 8 0.35
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (18 bp):
ATGCAATGTGATGCATGA
Found at i:25668696 original size:47 final size:47
Alignment explanation
Indices: 25668627--25669145 Score: 826
Period size: 47 Copynumber: 11.1 Consensus size: 47
25668617 GAAATGATAG
25668627 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
25668674 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25668721 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
25668768 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
25668815 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25668862 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
25668909 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25668956 TAAGGCCTAATAG-CGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25669002 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25669049 TAAGGCCTAATGGCCGATGTG-TGTATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
25669095 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25669142 TAAG
1 TAAG
25669146 TCCCGAAGGG
Statistics
Matches: 446, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 83 0.19
47 363 0.81
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:25674030 original size:22 final size:22
Alignment explanation
Indices: 25673969--25674033 Score: 58
Period size: 25 Copynumber: 2.8 Consensus size: 22
25673959 GAGGGTTAAT
* * *
25673969 AAATAAAAATATAACAATACTA
1 AAATTAAAATAGAATAATACTA
* *
25673991 AAATATAATACTATGAATAATATTA
1 AAAT-TAA-AATA-GAATAATACTA
25674016 AAATTAAAATAGAATAAT
1 AAATTAAAATAGAATAAT
25674034 GAAAAAAAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
22 11 0.32
23 5 0.15
24 6 0.18
25 12 0.35
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (22 bp):
AAATTAAAATAGAATAATACTA
Found at i:25678172 original size:6 final size:6
Alignment explanation
Indices: 25678161--25678276 Score: 232
Period size: 6 Copynumber: 19.3 Consensus size: 6
25678151 CTTTCTCTCC
25678161 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
25678209 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
1 TATACA TATACA TATACA TATACA TATACA TATACA TATACA TATACA
25678257 TATACA TATACA TATACA TA
1 TATACA TATACA TATACA TA
25678277 AGCTCACTTC
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 110 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (6 bp):
TATACA
Found at i:25684133 original size:19 final size:19
Alignment explanation
Indices: 25684111--25684204 Score: 77
Period size: 19 Copynumber: 4.8 Consensus size: 19
25684101 TAATAATAAT
25684111 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
* *
25684130 ATAAAAATACATATATATATGC
1 AT-AAAATA-ATA-ATATGTAC
*
25684152 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
25684170 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
25684190 AATAAAAT-ATAATAT
1 -ATAAAATAATAATAT
25684205 TAGGAAACGT
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
18 4 0.07
19 24 0.40
20 12 0.20
21 12 0.20
22 8 0.13
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:25685310 original size:19 final size:19
Alignment explanation
Indices: 25685269--25685313 Score: 74
Period size: 18 Copynumber: 2.4 Consensus size: 19
25685259 AGGGTTTCTT
*
25685269 GGTTTGTTTTTTGGGGTTA
1 GGTTTTTTTTTTGGGGTTA
25685288 -GTTTTTTTTTTGGGGTTA
1 GGTTTTTTTTTTGGGGTTA
25685306 GGTTTTTT
1 GGTTTTTT
25685314 GGGGGGGGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.04, C:0.00, G:0.31, T:0.64
Consensus pattern (19 bp):
GGTTTTTTTTTTGGGGTTA
Found at i:25686230 original size:78 final size:78
Alignment explanation
Indices: 25686067--25686307 Score: 269
Period size: 78 Copynumber: 3.1 Consensus size: 78
25686057 AAAGCAGATT
*
25686067 TTGAAAATACCT-CGATATGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
1 TTGAAAATACCTCCG-TGTGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
25686128 TTGAAAAATATAAA
65 TTGAAAGACAAAAA
*
25686142 TTGAAAAAAATACCTCCGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 TTG---AAAATACCTCCGTGTGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
25686206 TTTTTGAAAGACAGAAA
62 TTTTTGAAAGACAAAAA
* * * * **
25686223 TTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTT
1 TTGAAAATACCTCCGTGTGTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
25686287 TTGAAAGGCAAAAA
65 TTGAAAGACAAAAA
25686301 TTGAAAA
1 TTGAAAA
25686308 ACAGAAATTG
Statistics
Matches: 142, Mismatches: 15, Indels: 15
0.83 0.09 0.09
Matches are distributed among these distances:
75 3 0.02
77 2 0.01
78 114 0.80
79 6 0.04
81 17 0.12
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (78 bp):
TTGAAAATACCTCCGTGTGTGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
TGAAAGACAAAAA
Found at i:25686323 original size:92 final size:90
Alignment explanation
Indices: 25686209--25686396 Score: 245
Period size: 92 Copynumber: 2.1 Consensus size: 90
25686199 TTGATTTTTT
* *
25686209 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCGCAATA
*
25686273 TGAGTCAATTTTTTTTGA-AAGGCAAAAA
65 CGAGTCAA-TTTTTTTGACAA--CAAAAA
* * * *
25686301 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATAC
**
25686366 GAGTTGATTTTTTTGACAACAAAAA
66 GAGTCAATTTTTTTGACAACAAAAA
25686391 TTGAAA
1 TTGAAA
25686397 TTACCTCTGC
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
90 12 0.14
91 11 0.13
92 62 0.73
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATAC
GAGTCAATTTTTTTGACAACAAAAA
Found at i:25686453 original size:243 final size:241
Alignment explanation
Indices: 25685967--25686473 Score: 652
Period size: 248 Copynumber: 2.1 Consensus size: 241
25685957 AAAATAGACA
*
25685967 TTAAAA-ATAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTAAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
** * * ** *
25686031 GAGTTGATTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTCAAGG
66 GAGTTGATTTTTGAAACAAAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACTCAAGG
*
25686096 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAATACCTCCGT
131 CTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAAATATAAATTG--AAAAATACCTCCGT
* *
25686161 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
194 GCGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
*
25686209 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTAAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
** * *
25686274 GAGTCAATTTTTTTTGAAAGGCAAAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGAC-
66 GAGT---TGATTTTTGAAA--CAAAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACT
* * * *
25686338 CTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACA-A-AAATTG-AAATTA
126 C-AAGGCTCAACTCACCTCTCGCAATACGAGTTGA--TTTTTGA-AAAATATAAATTGAAAAATA
*
25686400 CCT-C-TGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
187 CCTCCGTGCGTGAT-CTGAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
*
25686453 TTAAAAGGCAGAAATTGAAAA
1 TTAAAAGACAGAAATTGAAAA
25686474 ACGGAAATTG
Statistics
Matches: 231, Mismatches: 23, Indels: 20
0.84 0.08 0.07
Matches are distributed among these distances:
242 5 0.02
243 62 0.27
244 63 0.27
245 1 0.00
246 18 0.08
247 1 0.00
248 64 0.28
249 6 0.03
250 8 0.03
251 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (241 bp):
TTAAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGAAACAAAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACTCAAGG
CTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAAAATATAAATTGAAAAATACCTCCGTGC
GTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
Found at i:25686462 original size:166 final size:165
Alignment explanation
Indices: 25686148--25686718 Score: 847
Period size: 166 Copynumber: 3.4 Consensus size: 165
25686138 TAAATTGAAA
* * * * * *
25686148 AAAATACCTCCGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGA
* * * *
25686213 AAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAG
65 AA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
25686277 TCAATTTTTTTTGAAAGGCAAAAATTGAAAAACAGAAATTG
126 TCGATTTTTTTTGAAAGGCAGAAATTGAAAAAC-GAAATTG
*
25686318 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAA
* *
25686383 AACAAAAATTGAAATTACCTCTGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
*
25686448 TTTTTTTAAAAGGCAGAAATTGAAAAACGGAAATTG
131 TTTTTTTGAAAGGCAGAAATTGAAAAAC-GAAATTG
* *
25686484 AAAATACCTCGGCATGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAA
* *
25686549 AACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA-
25686614 TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
130 TTTTTTTTGAAAGGCAGAAATTGAAAAACG-AAATTG
* *
25686651 AAAATACCTCGGCGTGTGACCTGAGACTCAACTTGCCTCTCGCAATACGAGTTGATTTTTTTTGA
1 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTTTTGA
25686716 AAA
65 AAA
25686719 TACCTCAACG
Statistics
Matches: 368, Mismatches: 29, Indels: 10
0.90 0.07 0.02
Matches are distributed among these distances:
165 2 0.01
166 193 0.52
167 85 0.23
168 29 0.08
169 10 0.03
170 49 0.13
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (165 bp):
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGAT
TTTTTTTGAAAGGCAGAAATTGAAAAACGAAATTG
Found at i:25686468 original size:76 final size:75
Alignment explanation
Indices: 25686305--25686473 Score: 232
Period size: 74 Copynumber: 2.2 Consensus size: 75
25686295 CAAAAATTGA
*
25686305 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCGGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
25686370 TGATTTTTTTG
65 CGATTTTTTTG
* * * * *
25686381 ACAACAAAAATTGAAATTACCTCTGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
1 AAAACAGAAATTGAAAATACCTCGGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTC
*
25686445 GATTTTTTTT
66 GATTTTTTTG
25686455 AAAAGGCAGAAATTGAAAA
1 AAAA--CAGAAATTGAAAA
25686474 ACGGAAATTG
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
74 43 0.54
76 37 0.46
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (75 bp):
AAAACAGAAATTGAAAATACCTCGGCGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTC
GATTTTTTTG
Found at i:25686562 original size:90 final size:89
Alignment explanation
Indices: 25686388--25686562 Score: 244
Period size: 92 Copynumber: 1.9 Consensus size: 89
25686378 TTGACAACAA
* * * * *
25686388 AAATTGAAATTACCTCTGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
1 AAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTCGATTTTTT
*
25686453 TTAAAAGGCAGAAATTGAAAAACGG
66 TGAAAA-GCAGAAATTGAAAAACGG
* *
25686478 AAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTCGATTTT
25686543 TTTGAAAA-CAGAAATTGAAA
64 TTTGAAAAGCAGAAATTGAAA
25686563 TTACCTCAGT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
90 29 0.39
92 46 0.61
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTCGATTTTTT
TGAAAAGCAGAAATTGAAAAACGG
Found at i:25686601 original size:74 final size:76
Alignment explanation
Indices: 25686471--25686640 Score: 227
Period size: 74 Copynumber: 2.2 Consensus size: 76
25686461 CAGAAATTGA
* * *
25686471 AAAACGGAAATTGAAAATACCTCGGCATGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAG-ATGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGT
25686536 TGA-TTTTTTTG
65 TGATTTTTTTTG
* * * *
25686547 AAAACAGAAATTGAAATTACCTCAG-TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCAGATGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTT
25686611 GATTTTTTTTTG
66 GA-TTTTTTTTG
*
25686623 AAAGGCAGAAATTGAAAA
1 AAA-ACAGAAATTGAAAA
25686641 ACGAAAATTG
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
74 37 0.45
76 33 0.40
77 12 0.15
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (76 bp):
AAAACAGAAATTGAAAATACCTCAGATGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTT
GATTTTTTTTG
Found at i:25686765 original size:62 final size:62
Alignment explanation
Indices: 25686648--25687043 Score: 389
Period size: 62 Copynumber: 6.1 Consensus size: 62
25686638 AAAACGAAAA
* * ** *
25686648 TTGAAAATACCTCGGCGTGTGACCTGAGACTCAACTTGCCTCTCGCAATACGAGTTGATTTTTT
1 TTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * **
25686712 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTT----
**
25686777 ACAGAAA
61 -----TT
* * *
25686784 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * **
25686846 TTTAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAACATACAAA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG---AT---TT
**
25686911 AAT
60 TTT
* * *
25686914 TTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
25686976 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGA-ATTTT
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
25687037 TTGAAAA
1 TTGAAAA
25687044 ACAGAAGTTG
Statistics
Matches: 272, Mismatches: 44, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
61 11 0.04
62 130 0.48
63 5 0.02
64 18 0.07
65 4 0.01
68 51 0.19
71 5 0.02
72 48 0.18
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (62 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
Found at i:25686983 original size:130 final size:133
Alignment explanation
Indices: 25686645--25687262 Score: 624
Period size: 130 Copynumber: 4.5 Consensus size: 133
25686635 TGAAAAACGA
* * * ** *
25686645 AAATTGAAAATACCTCGGCGTGTGACCTGAGACTCAACTTGCCTCTCGCAATACGAGTTGATTTT
1 AAATTG-AAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * **
25686710 TTTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
63 TTTTGAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA
25686775 AAACAG
128 AAACAG
*
25686781 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* ** *
25686846 TTTAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-CAT-ACA
65 TTGAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAA
25686909 A-A-
130 ACAG
* *
25686911 AATTTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGA-AATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
25686976 TTGAAAATACCTCAGCGCGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGAATTTTTTGA
65 TTGAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA--TTTTG-
25687041 AAAACAG
127 AAAACAG
* * *
25687048 AAGTTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTG-AAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
25687113 TTTGACAAACAGAAATTGAAAAATACCTCAGC-ATGTAAGCC-AAGGCTCAACTCACCTCTCGCA
62 TTT------------TTG-AAAATACCTCAGCGA-GT---CCTGAGGCTCAACTCACCTCTCGCA
*
25687176 ATATGAGTTGATTTTTTGAAAAACAG
110 ATATGAGTTGA-ATTTTG-AAAACAG
* * * *
25687202 AAATTGAAAACACCTTAGCATGT---GAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTT
1 AAATTG-AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
25687263 GAAAAACATA
Statistics
Matches: 414, Mismatches: 37, Indels: 50
0.83 0.07 0.10
Matches are distributed among these distances:
130 113 0.27
131 3 0.01
132 3 0.01
133 2 0.00
134 87 0.21
135 6 0.01
136 19 0.05
137 19 0.05
138 1 0.00
139 34 0.08
140 6 0.01
148 5 0.01
149 32 0.08
152 3 0.01
153 15 0.04
154 33 0.08
155 31 0.07
156 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (133 bp):
AAATTGAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
TGAAAATACCTCAGCGAGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAA
CAG
Found at i:25687101 original size:77 final size:76
Alignment explanation
Indices: 25686976--25687442 Score: 471
Period size: 71 Copynumber: 6.1 Consensus size: 76
25686966 TTGATTTTTT
* * *
25686976 TTGAAAATACCTCAGC--GCGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGAATTTTTT
1 TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTT
*
25687039 GAAAAACAGAAG
65 GAAAAACAGAAA
* *
25687051 TTGAAAACACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
25687116 GACAAACAGAAA
65 GAAAAACAGAAA
* *
25687128 TTGAAAAATACCTCAGCATGTAAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTG-AAAATACCTCAGCATGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
25687192 TGAAAAACAGAAA
64 TGAAAAACAGAAA
* * *
25687205 TTGAAAACACCTTAGCA--TG---TGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
25687264 AAAAACATAAATTGAGCAGAAA
66 ------A-AAA---A-CAGAAA
* * *
25687286 TTGAAAATACCTCA--ATGGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
** *
25687349 ---ATGATAAA
66 AAAAACAGAAA
* *
25687357 TTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTA
1 TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-
*
25687420 AATTAAAACAGAAA
65 GA--AAAACAGAAA
25687434 TTGAAAATA
1 TTGAAAATA
25687443 GAAATGGAAA
Statistics
Matches: 333, Mismatches: 30, Indels: 56
0.79 0.07 0.13
Matches are distributed among these distances:
70 6 0.02
71 94 0.28
74 1 0.00
75 16 0.05
76 14 0.04
77 92 0.28
78 48 0.14
79 3 0.01
80 1 0.00
81 19 0.06
84 33 0.10
85 6 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (76 bp):
TTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACAGAAA
Found at i:25687192 original size:155 final size:149
Alignment explanation
Indices: 25687000--25687440 Score: 468
Period size: 155 Copynumber: 2.9 Consensus size: 149
25686990 GCGCGTCCTG
*
25687000 AGGCTCAATTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAACAGAAGTTGAAAACACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTGAAAAACAGAA-TTGAAAACACCTCA
*
25687065 GCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATT
64 GC-TGTGA-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAACAAACAGAAATT
25687130 GAAAAATACCTCAGCATGTAAG-C-CA
127 GAAAAATACCTCA--ATG--AGTCTCA
*
25687155 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAACACCTTAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAG-AATTGAAAACACCTCAG
* * **
25687220 C-ATG--TGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCA
65 CTGTGACTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--TTAAC---AA---A-CA
* **
25687282 GAAATTG-AAAATACCTCAATGGGTCTTG
121 GAAATTGAAAAATACCTCAATGAGTCTCA
** * * *
25687310 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGATA-AATTGAAAATACCTCA-A
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAATTGAAAACACCTCAGC
* * *
25687372 TGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAATTAAAACAGAAATTG
66 TGTGAC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAA--CAAACAGAAATTG
25687437 AAAA
128 AAAA
25687441 TAGAAATGGA
Statistics
Matches: 246, Mismatches: 21, Indels: 44
0.79 0.07 0.14
Matches are distributed among these distances:
148 9 0.04
149 42 0.17
151 2 0.01
152 20 0.08
153 4 0.02
154 37 0.15
155 111 0.45
157 12 0.05
158 9 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (149 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAATTGAAAACACCTCAGC
TGTGACTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAACAAACAGAAATTGAAA
AATACCTCAATGAGTCTCA
Found at i:25687728 original size:77 final size:77
Alignment explanation
Indices: 25687580--25687922 Score: 400
Period size: 77 Copynumber: 4.4 Consensus size: 77
25687570 TGGCCCGAGA
* **
25687580 CTCAACTCA-C-CTCGCAATATGAGTTGATTCTTTTG--AAAAGCAGAAATTGAAAATACCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAAATTGAAAATACCTCAG
25687641 CGTGTCCTGAGG
66 CGTGTCCTGAGG
* *
25687653 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAAATTGAAAATACCTCAG
25687718 CGTGTCCTGAGG
66 CGTGTCCTGAGG
* * *
25687730 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACA-A-AAATTGAAATTACCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAAATTGAAAATACCTCAG
*
25687791 C--GTCTTGAGG
66 CGTGTCCTGAGG
* * *
25687801 CTCAACTCGCTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAATAAAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG--------A-T--AAAAATAGAAATTGA
25687866 AAATACCTCAGCGTGTCCTGAGG
55 AAATACCTCAGCGTGTCCTGAGG
*
25687889 CTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
25687923 GAAAAACAGA
Statistics
Matches: 229, Mismatches: 20, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
71 35 0.15
73 31 0.14
74 2 0.01
75 35 0.15
77 63 0.28
81 1 0.00
84 4 0.02
85 1 0.00
86 18 0.08
88 39 0.17
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (77 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAAATTGAAAATACCTCAG
CGTGTCCTGAGG
Found at i:25687921 original size:88 final size:86
Alignment explanation
Indices: 25687771--25687940 Score: 241
Period size: 88 Copynumber: 2.0 Consensus size: 86
25687761 TTTGACAAAC
* * * * * *
25687771 AAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCGCTTCTCGCAATATGAGTTGATTTTTT
1 AAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
** *
25687836 TGAAACATAAATTAAAAAAAT
66 AAAAACAGAAATTAAAAAAAT
25687857 AAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 AAAAATTGAAAATACCTCAGC--GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
25687922 TGAAAAACAGAAATTAAAA
64 TGAAAAACAGAAATTAAAA
25687941 GTAGAAATTG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 20 0.27
88 53 0.73
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (86 bp):
AAAAATTGAAAATACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTG
AAAAACAGAAATTAAAAAAAT
Found at i:25687960 original size:14 final size:13
Alignment explanation
Indices: 25687924--25687968 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
25687914 TTAATTTTTG
25687924 AAAAACAGAAATT
1 AAAAACAGAAATT
**
25687937 AAAAGTAGAAATT
1 AAAAACAGAAATT
25687950 GAAAAACAGAAATT
1 -AAAAACAGAAATT
25687964 AAAAA
1 AAAAA
25687969 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:25688046 original size:73 final size:74
Alignment explanation
Indices: 25687948--25688115 Score: 248
Period size: 73 Copynumber: 2.3 Consensus size: 74
25687938 AAAGTAGAAA
* * * * * *
25687948 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
25688013 GTTGA-TTT
66 GTTGATTTT
* * *
25688021 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
25688086 GTTGATTTT
66 GTTGATTTT
25688095 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
25688116 AACGAAAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
73 61 0.73
74 23 0.27
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTT
Found at i:25688215 original size:91 final size:89
Alignment explanation
Indices: 25688032--25688201 Score: 252
Period size: 91 Copynumber: 1.9 Consensus size: 89
25688022 TGAAAAGCAT
* * *
25688032 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTAAGGCCCAACTCACCTCTCACAATATGAGTTGATTTTTT
*
25688097 GAAAAGCATAAATTGAAAAAACGA
66 GAAAAGCAGAAATTGAAAAAACGA
*
25688121 AAATTGAAAATACCTCAGCGTGTGACCTAAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTAAGGCCCAACTCACCTCTCACAATATGAGTTGA-TTT
25688186 TTTG-AAAGACAGAAAT
63 TTTGAAAAG-CAGAAAT
25688202 AAAAACATCA
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
89 22 0.31
91 37 0.51
92 13 0.18
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTAAGGCCCAACTCACCTCTCACAATATGAGTTGATTTTTT
GAAAAGCAGAAATTGAAAAAACGA
Found at i:25703671 original size:23 final size:23
Alignment explanation
Indices: 25703634--25703677 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
25703624 TTTAAAATTT
* * *
25703634 AAATTAAATTTTATAATTTTAAG
1 AAATTAAAATATATAAATTTAAG
25703657 AAATTAAAATATATAAATTTA
1 AAATTAAAATATATAAATTTA
25703678 TTATATATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATTAAAATATATAAATTTAAG
Found at i:25707885 original size:22 final size:21
Alignment explanation
Indices: 25707860--25707902 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
25707850 ATTTTTCTCT
*
25707860 CATTTTTTCTCTTGCCAAACAC
1 CATTTTTTCTCTT-CAAAACAC
*
25707882 CATTTTTTTTCTTCAAAACAC
1 CATTTTTTCTCTTCAAAACAC
25707903 ATGGTCTGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.26, C:0.28, G:0.02, T:0.44
Consensus pattern (21 bp):
CATTTTTTCTCTTCAAAACAC
Found at i:25709064 original size:66 final size:67
Alignment explanation
Indices: 25708975--25709101 Score: 204
Period size: 66 Copynumber: 1.9 Consensus size: 67
25708965 CTTGTAGATG
* *
25708975 AAATGAGCGAACCATATGTTTTGAAGAAGAAAAA-TGGTGTTTGGCAAGAGAGAAAATGAGATAA
1 AAATGAGCAAACCATATATTTTGAAGAA-AAAAAGTGGTGTTTGGCAAGAGAGAAAATGAGATAA
25709039 AGA
65 AGA
*
25709042 AAATG-GCAAACCATGTATTTTGAAGAAAAAAAGTGGTGTTTGGCAAGAGAGAAAATGAGA
1 AAATGAGCAAACCATATATTTTGAAGAAAAAAAGTGGTGTTTGGCAAGAGAGAAAATGAGA
25709102 GAAAAAATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
65 5 0.09
66 46 0.82
67 5 0.09
ACGTcount: A:0.46, C:0.06, G:0.27, T:0.21
Consensus pattern (67 bp):
AAATGAGCAAACCATATATTTTGAAGAAAAAAAGTGGTGTTTGGCAAGAGAGAAAATGAGATAAA
GA
Found at i:25712650 original size:79 final size:79
Alignment explanation
Indices: 25712489--25712712 Score: 235
Period size: 79 Copynumber: 2.8 Consensus size: 79
25712479 TTGAATGATG
* * * * *
25712489 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
25712551 TTTGTGCGAGATACATA
63 TTTGTGCGAGATACAAA
* *
25712568 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
25712630 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATAC-AAA
** * *
25712647 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
25712712 G
66 G
25712713 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
78 24 0.20
79 73 0.59
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACAAA
Found at i:25712726 original size:40 final size:40
Alignment explanation
Indices: 25712490--25712712 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
25712480 TGAATGATGT
* * * *
25712490 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
25712530 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-ATAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
25712569 CCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
25712609 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25712647 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25712688 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
25712713 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
39 72 0.44
40 81 0.50
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:25712734 original size:79 final size:79
Alignment explanation
Indices: 25712583--25712745 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
25712573 ACTAAGATCT
* ** *
25712583 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
*
25712648 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
25712662 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTA
* *
25712725 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
25712741 GAAGG
1 GAAGG
25712746 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
CCGGGTTAAATCCC
Found at i:25720455 original size:38 final size:37
Alignment explanation
Indices: 25720367--25720588 Score: 225
Period size: 40 Copynumber: 5.7 Consensus size: 37
25720357 TTGAATGATG
*
25720367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-A-C-TA
*
25720407 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTA
*
25720445 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACT-A
*
25720484 TTCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACT--A
* *
25720523 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATACTA
*
25720561 TAACCGGGCTATGTCCCGAAGGCATTTG
1 T--CCGGGCTAAGT-CCGAAGGCATTTG
25720589 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 7, Indels: 20
0.86 0.04 0.10
Matches are distributed among these distances:
38 74 0.45
39 4 0.02
40 76 0.46
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (37 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTA
Found at i:25720526 original size:78 final size:77
Alignment explanation
Indices: 25720367--25720588 Score: 229
Period size: 78 Copynumber: 2.8 Consensus size: 77
25720357 TTGAATGATG
* * * * * *
25720367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-CCCGAAGGCAT
25720430 TTGTGCGAGATACTA
63 TTGTGCGAGATACTA
*
25720445 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGCCCGAAGGCATT
*
25720507 TGTGCGAGTTACTAAA
64 TGTGCGAGATACT--A
** * *
25720523 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAG-CCCGAAGGCATTT
25720588 G
65 G
25720589 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 18
0.82 0.07 0.12
Matches are distributed among these distances:
76 23 0.19
77 2 0.02
78 74 0.60
79 11 0.09
80 14 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGCCCGAAGGCATTTG
TGCGAGATACTA
Found at i:25734540 original size:43 final size:43
Alignment explanation
Indices: 25734479--25734630 Score: 234
Period size: 43 Copynumber: 3.5 Consensus size: 43
25734469 GCATTACGCT
25734479 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCC
*
25734522 TGCTAGGCACGAAGGCCCGAATACACATTA-TCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAAGCC
* * * *
25734565 TGCTAGGCACGAAGGACTGAATACACATCACCGGCACAAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCC
*
25734608 TGTTAGGCACGAAGGCCCGAATA
1 TGCTAGGCACGAAGGCCCGAATA
25734631 TAATTCCAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 97 0.99
ACGTcount: A:0.32, C:0.30, G:0.26, T:0.13
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCC
Found at i:25734765 original size:38 final size:38
Alignment explanation
Indices: 25734623--25734755 Score: 180
Period size: 38 Copynumber: 3.5 Consensus size: 38
25734613 GGCACGAAGG
* *
25734623 CCCGAATATAATT-CCAGCACTAGGCCTGCGGGATTTAA
1 CCCGAATAT-ATTACCAGCACGAAGCCTGCGGGATTTAA
* * *
25734661 CCCGGATATATTACCAGCACGAAGCCTGCAGTATTTAA
1 CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAA
25734699 CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
25734737 CCCGGATATAATT-CCAGCA
1 CCCGAATAT-ATTACCAGCA
25734756 TATAGCCTGC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
37 3 0.04
38 78 0.93
39 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCGAATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:25743693 original size:27 final size:27
Alignment explanation
Indices: 25743663--25743746 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
25743653 ATGCAAATTG
*
25743663 TATTTACCAATGGCTATGTGCCTATCA
1 TATTTACCAATGGCTATGTGCCAATCA
* * * * * *
25743690 TATTTATCGA-GACTCTGTGTCGATCA
1 TATTTACCAATGGCTATGTGCCAATCA
* * *
25743716 TATTTACCCATGGCTGTGTGCCAATTA
1 TATTTACCAATGGCTATGTGCCAATCA
25743743 TATT
1 TATT
25743747 ACCTTCGCTA
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (27 bp):
TATTTACCAATGGCTATGTGCCAATCA
Found at i:25744310 original size:6 final size:7
Alignment explanation
Indices: 25744292--25744316 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25744282 GCTTACTTGT
25744292 ATTTTTG
1 ATTTTTG
25744299 ATTTTTG
1 ATTTTTG
25744306 ATTTTTG
1 ATTTTTG
25744313 ATTT
1 ATTT
25744317 CTGGTTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (7 bp):
ATTTTTG
Found at i:25757132 original size:15 final size:15
Alignment explanation
Indices: 25757112--25757165 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
25757102 TGATCTGAAG
25757112 GAACAAAATATACAA
1 GAACAAAATATACAA
* * *
25757127 GAACAACATCAAAAGAA
1 GAACAAAAT--ATACAA
25757144 GGAACAAAATATACAA
1 -GAACAAAATATACAA
25757160 GAACAA
1 GAACAA
25757166 CATCAAAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 14 0.47
16 4 0.13
17 4 0.13
18 8 0.27
ACGTcount: A:0.65, C:0.15, G:0.11, T:0.09
Consensus pattern (15 bp):
GAACAAAATATACAA
Found at i:25757145 original size:33 final size:33
Alignment explanation
Indices: 25757108--25757173 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
25757098 GCAATGATCT
25757108 GAAGGAACAAAATATACAAGAACAACATCAAAA
1 GAAGGAACAAAATATACAAGAACAACATCAAAA
25757141 GAAGGAACAAAATATACAAGAACAACATCAAAA
1 GAAGGAACAAAATATACAAGAACAACATCAAAA
25757174 CAGATACCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.64, C:0.15, G:0.12, T:0.09
Consensus pattern (33 bp):
GAAGGAACAAAATATACAAGAACAACATCAAAA
Found at i:25758098 original size:11 final size:11
Alignment explanation
Indices: 25758083--25758208 Score: 82
Period size: 11 Copynumber: 11.3 Consensus size: 11
25758073 CTCTAATAAG
25758083 TATATAT-TAT
1 TATATATATAT
*
25758093 GTATATATATTT
1 -TATATATATAT
25758105 TA-ATACTATAT
1 TATATA-TATAT
* *
25758116 TGTGTATATAT
1 TATATATATAT
*
25758127 TTTATATATAT
1 TATATATATAT
25758138 TATATATAT-T
1 TATATATATAT
*
25758148 TTTAATATTATAT
1 TAT-ATA-TATAT
* *
25758161 T-TCTATATTT
1 TATATATATAT
25758171 TA-ATACTATAT
1 TATATA-TATAT
*
25758182 TATGTATATATTT
1 TA--TATATATAT
25758195 TATATATATAT
1 TATATATATAT
25758206 TAT
1 TAT
25758209 GTACATATAT
Statistics
Matches: 90, Mismatches: 14, Indels: 22
0.71 0.11 0.17
Matches are distributed among these distances:
10 13 0.14
11 58 0.64
12 8 0.09
13 8 0.09
14 3 0.03
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (11 bp):
TATATATATAT
Found at i:25758101 original size:13 final size:13
Alignment explanation
Indices: 25758083--25758246 Score: 85
Period size: 13 Copynumber: 12.8 Consensus size: 13
25758073 CTCTAATAAG
25758083 TATATATTATGTA
1 TATATATTATGTA
25758096 TATATATT-T-TAA
1 TATATATTATGT-A
*
25758108 TACTATATTGTGTA
1 TA-TATATTATGTA
* *
25758122 TATATTTTATATA
1 TATATATTATGTA
* *
25758135 TATTATATATATTTT
1 TA-TATAT-TATGTA
* *
25758150 TA-ATATTATATT
1 TATATATTATGTA
*
25758162 TCTATATT-T-TAA
1 TATATATTATGT-A
25758174 TACTATATTATGTA
1 TA-TATATTATGTA
*
25758188 TATAT-TT-TATA
1 TATATATTATGTA
25758199 TATATATTATGTA
1 TATATATTATGTA
* *
25758212 CATATATT-TCTA
1 TATATATTATGTA
* *
25758224 -ATATTATTTTTTA
1 TATA-TATTATGTA
25758237 TATATATTAT
1 TATATATTAT
25758247 CATGTATATA
Statistics
Matches: 119, Mismatches: 16, Indels: 32
0.71 0.10 0.19
Matches are distributed among these distances:
11 13 0.11
12 23 0.19
13 60 0.50
14 15 0.13
15 8 0.07
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (13 bp):
TATATATTATGTA
Found at i:25758260 original size:25 final size:25
Alignment explanation
Indices: 25758232--25758306 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 25
25758222 TAATATTATT
25758232 TTTTATATA-TATTATCATGTATATA
1 TTTTATATACTATTATC-TGTATATA
* *
25758257 TTTTA-ATATTATTAGT-TATATATA
1 TTTTATATACTATTA-TCTGTATATA
*
25758281 TTTTTTATACTATT-TCGTGTATATA
1 TTTTATATACTATTATC-TGTATATA
25758306 T
1 T
25758307 ACTTATATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
23 1 0.02
24 14 0.34
25 25 0.61
26 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (25 bp):
TTTTATATACTATTATCTGTATATA
Found at i:25758279 original size:40 final size:38
Alignment explanation
Indices: 25758086--25758290 Score: 131
Period size: 38 Copynumber: 5.7 Consensus size: 38
25758076 TAATAAGTAT
* * *
25758086 ATATTA-TGTATATATATTTTA-ATAC-TATATTGTGT-
1 ATATTATTTTATATATATATTATATACATATATT-TCTA
25758121 ATA-TA-TTT-TATATATATTATAT--ATAT-TTT-TA
1 ATATTATTTTATATATATATTATATACATATATTTCTA
* *
25758152 ATATTATATTTCTATAT-T-TTA-ATAC-TATATTATGT-
1 ATATTAT-TTTATATATATATTATATACATATATT-TCTA
*
25758187 ATA-TATTTTATATATATATTATGTACATATATTTCTA
1 ATATTATTTTATATATATATTATATACATATATTTCTA
* **
25758224 ATATTATTTTTTATATATATTATCATGTATATATTT-TA
1 ATATTATTTTATATATATATTAT-ATACATATATTTCTA
* *
25758262 ATATTATTAGTTATATATATTTTTTATAC
1 ATATTATT--TTATATATATATTATATAC
25758291 TATTTCGTGT
Statistics
Matches: 135, Mismatches: 14, Indels: 38
0.72 0.07 0.20
Matches are distributed among these distances:
30 1 0.01
31 4 0.03
32 6 0.04
33 27 0.20
34 16 0.12
35 15 0.11
36 6 0.04
37 9 0.07
38 28 0.21
39 11 0.08
40 12 0.09
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (38 bp):
ATATTATTTTATATATATATTATATACATATATTTCTA
Found at i:25758288 original size:13 final size:13
Alignment explanation
Indices: 25758186--25758289 Score: 70
Period size: 13 Copynumber: 8.2 Consensus size: 13
25758176 CTATATTATG
*
25758186 TATATATTTTATA
1 TATATATTTTTTA
* *
25758199 TATATATTATGTA
1 TATATATTTTTTA
* * *
25758212 CATATATTTCTAA
1 TATATATTTTTTA
25758225 TAT-TATTTTTTA
1 TATATATTTTTTA
* *
25758237 TATATA-TTATCA
1 TATATATTTTTTA
* *
25758249 TGTATATATTTTA
1 TATATATTTTTTA
**
25758262 -ATATTATTAGTTA
1 TATA-TATTTTTTA
25758275 TATATATTTTTTA
1 TATATATTTTTTA
25758288 TA
1 TA
25758290 CTATTTCGTG
Statistics
Matches: 65, Mismatches: 22, Indels: 8
0.68 0.23 0.08
Matches are distributed among these distances:
12 21 0.32
13 41 0.63
14 3 0.05
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (13 bp):
TATATATTTTTTA
Found at i:25758304 original size:63 final size:65
Alignment explanation
Indices: 25758183--25758306 Score: 155
Period size: 63 Copynumber: 1.9 Consensus size: 65
25758173 ATACTATATT
* **
25758183 ATGTATATATTTTATATATATATTATGTACATATATTTCTAATATTATTTTTTATATATATTATC
1 ATGTATATATTTTATATATATATTATGTACATATATTTCTAATACTATTTCGTATATATATTATC
* * * *
25758248 ATGTATATATTTTA-ATAT-TATTA-GTTATATATATTTTTTATACTATTTCGTGTATATAT
1 ATGTATATATTTTATATATATATTATG-TACATATATTTCTAATACTATTTCGTATATATAT
25758307 ACTTATATTA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 32 0.63
64 4 0.08
65 14 0.27
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (65 bp):
ATGTATATATTTTATATATATATTATGTACATATATTTCTAATACTATTTCGTATATATATTATC
Found at i:25758612 original size:21 final size:18
Alignment explanation
Indices: 25758588--25758632 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 18
25758578 ACATTTCTAA
25758588 TATGTATTTCTAATACTATAT
1 TATGTATTTC--ATA-TATAT
25758609 TATGT-TTTCATATATAT
1 TATGTATTTCATATATAT
25758626 TATGTAT
1 TATGTAT
25758633 ATACTTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 10 0.43
18 4 0.17
20 4 0.17
21 5 0.22
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.56
Consensus pattern (18 bp):
TATGTATTTCATATATAT
Found at i:25762160 original size:46 final size:46
Alignment explanation
Indices: 25762107--25762282 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
25762097 TATTTGGGCA
25762107 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
25762153 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
25762200 TCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
25762246 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25762283 GCGGGTAACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:25762262 original size:93 final size:93
Alignment explanation
Indices: 25762103--25762274 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
25762093 AGGATATTTG
* *
25762103 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
25762168 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
25762196 GGCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
25762261 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
25762275 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:25764621 original size:21 final size:21
Alignment explanation
Indices: 25764595--25764679 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
25764585 TGATCAGAAT
*
25764595 ACGACACATAAAGTGCCTGAA
1 ACGACACACAAAGTGCCTGAA
* * *
25764616 ACGACACACGAGGTGCCTGAC
1 ACGACACACAAAGTGCCTGAA
* * *
25764637 ACGACACACGAGGTGCCTAAAA
1 ACGACACACAAAGTGCCT-GAA
* *
25764659 TACGACACATAAAGTGTCTGA
1 -ACGACACACAAAGTGCCTGA
25764680 TCGGCAAAGC
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
21 35 0.69
22 2 0.04
23 14 0.27
ACGTcount: A:0.38, C:0.26, G:0.22, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTGAA
Found at i:25764667 original size:23 final size:21
Alignment explanation
Indices: 25764607--25764656 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
25764597 GACACATAAA
25764607 GTGCCTGAA-ACGACACACGAG
1 GTGCCT-AACACGACACACGAG
*
25764628 GTGCCTGACACGACACACGAG
1 GTGCCTAACACGACACACGAG
25764649 GTGCCTAA
1 GTGCCTAA
25764657 AATACGACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.30, C:0.30, G:0.28, T:0.12
Consensus pattern (21 bp):
GTGCCTAACACGACACACGAG
Found at i:25765862 original size:23 final size:22
Alignment explanation
Indices: 25765812--25765864 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
25765802 AAATTAGTTA
*
25765812 TTTTATTACAAGTGTACATATC
1 TTTTATTACAAATGTACATATC
25765834 TATTTATTACAAATGTACCAATAT-
1 T-TTTATTACAAATGTA-C-ATATC
25765858 TTTTATT
1 TTTTATT
25765865 GCAATTGTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 1 0.04
23 20 0.74
24 2 0.07
25 4 0.15
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (22 bp):
TTTTATTACAAATGTACATATC
Found at i:25767159 original size:16 final size:18
Alignment explanation
Indices: 25767130--25767164 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
25767120 TGAATTCTAG
25767130 TAGCTATAAGGATT-AAA
1 TAGCTATAAGGATTCAAA
25767147 TAGCTAT-AGGATTCAAA
1 TAGCTATAAGGATTCAAA
25767164 T
1 T
25767165 CTAGAGGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (18 bp):
TAGCTATAAGGATTCAAA
Found at i:25776190 original size:22 final size:22
Alignment explanation
Indices: 25776165--25776208 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25776155 CCCGATACTG
25776165 ATACAACATGGCCCAGAAAACT
1 ATACAACATGGCCCAGAAAACT
25776187 ATACAACATGGCCCAGAAAACT
1 ATACAACATGGCCCAGAAAACT
25776209 GACTTCGCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.27, G:0.14, T:0.14
Consensus pattern (22 bp):
ATACAACATGGCCCAGAAAACT
Found at i:25776791 original size:30 final size:29
Alignment explanation
Indices: 25776757--25776816 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
25776747 CAACTTAACA
25776757 AGCAAATCCCTCTAAAATAATAACAAAATT
1 AGCAAATCCCTCTAAAATAATAA-AAAATT
** *
25776787 AGCAAATGTCTTTAAAATAATAAAAAATT
1 AGCAAATCCCTCTAAAATAATAAAAAATT
25776816 A
1 A
25776817 ACAATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (29 bp):
AGCAAATCCCTCTAAAATAATAAAAAATT
Found at i:25789047 original size:56 final size:56
Alignment explanation
Indices: 25788895--25789047 Score: 238
Period size: 55 Copynumber: 2.8 Consensus size: 56
25788885 ATGTATATGA
*
25788895 GGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACGATTTATACGTT
1 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCACGATTTATACGTT
* * * *
25788951 AGCATCGATATGTGAC-TCGATATATGTGTACGAGTAAGACCA-TATTTTATATGTT
1 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCACGA-TTTATACGTT
25789006 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACC
1 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACC
25789048 CTATCTGGGA
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
54 1 0.01
55 48 0.55
56 39 0.44
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (56 bp):
GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCACGATTTATACGTT
Found at i:25789065 original size:56 final size:55
Alignment explanation
Indices: 25788895--25789075 Score: 215
Period size: 56 Copynumber: 3.3 Consensus size: 55
25788885 ATGTATATGA
* *
25788895 GGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCACGATTTATAC-GTT
1 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACC-CTA-TTATACAGTT
* * * * *
25788951 AGCATCGATATGTGAC-TCGATATATGTGTACGAGTAAGACCATATTTTATATGTT
1 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCCTATTATACA-GTT
**
25789006 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCCTATCTGGGACAG-T
1 GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCCTAT-T-ATACAGTT
25789062 GGCATCGATATGTG
1 GGCATCGATATGTG
25789076 GTTACATGTA
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
53 4 0.04
54 1 0.01
55 41 0.38
56 57 0.53
57 2 0.02
58 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (55 bp):
GGCATCGATATGTGACTTCGATATATGTGTGCGAGTAAGACCCTATTATACAGTT
Found at i:25792245 original size:30 final size:30
Alignment explanation
Indices: 25792185--25792247 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
25792175 ATTTTCAGAC
* *
25792185 TTAGGGGTAAAATGGTAATTTTGTAAAATT
1 TTAGGGGCAAAATGGTAATTTTGCAAAATT
* **
25792215 TTAGGGGCAAAATGGTCATTTTGCCCAATT
1 TTAGGGGCAAAATGGTAATTTTGCAAAATT
25792245 TTA
1 TTA
25792248 AATTATTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (30 bp):
TTAGGGGCAAAATGGTAATTTTGCAAAATT
Found at i:25792838 original size:50 final size:47
Alignment explanation
Indices: 25792566--25792836 Score: 231
Period size: 46 Copynumber: 5.8 Consensus size: 47
25792556 TTGGGTCATT
* * * * *
25792566 TGTGCGCTAGTATAAGA-CATGTTTGGGACAT-GCATCGGCCAC-ATTA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGA-GA
* * *
25792612 TGAGAGCCAGTGTAAGACCATGTCT-GGACATGGCATCAGCATTGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGAGA
* * * * *
25792659 CGAGAGCTAGTGTAAGA-CATGTCTGAGACAT-ACATCAGCCTCGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACGAGA
* *
25792705 TGTAAGCTAGTGTAAGA-CATGTCTGGGATAT-GCATCTA-CTACGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGC-ACGAGA
* *
25792751 TGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-GAGA
25792797 TGTGGGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGT--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
25792837 GGTATTACAC
Statistics
Matches: 183, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
44 9 0.05
45 17 0.09
46 89 0.49
47 35 0.19
48 2 0.01
49 1 0.01
50 30 0.16
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAGA
Found at i:25795382 original size:14 final size:14
Alignment explanation
Indices: 25795343--25795383 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
25795333 ATTCATAAGC
25795343 ATCTCTTTTCTTT-T
1 ATCTC-TTTCTTTAT
25795357 AT-TCTATTCTTTAT
1 ATCTCT-TTCTTTAT
25795371 ATCTCTTTCTTTA
1 ATCTCTTTCTTTA
25795384 ACATTGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 1 0.04
13 8 0.33
14 12 0.50
15 3 0.12
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (14 bp):
ATCTCTTTCTTTAT
Found at i:25814378 original size:13 final size:13
Alignment explanation
Indices: 25814360--25814386 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25814350 CCCTTCTCCA
25814360 TATTTATTTTCTT
1 TATTTATTTTCTT
25814373 TATTTATTTTCTT
1 TATTTATTTTCTT
25814386 T
1 T
25814387 CTTTCCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (13 bp):
TATTTATTTTCTT
Found at i:25815400 original size:40 final size:38
Alignment explanation
Indices: 25815355--25815450 Score: 102
Period size: 40 Copynumber: 2.5 Consensus size: 38
25815345 ACAGTACTTT
*
25815355 ATGGTGTGTAGGGTTGGATAGGTCGATTTTATCCCCAT
1 ATGGTGTGTAGGGTTGGATAGGTCGATTTTATCCCCAC
* ** * * *
25815393 ATTTGGTGTGCAAAGATGGGTGGGTCGATTTTATCCCCAC
1 A--TGGTGTGTAGGGTTGGATAGGTCGATTTTATCCCCAC
*
25815433 ATGGTGTGTTGGGTTGGA
1 ATGGTGTGTAGGGTTGGA
25815451 CGGAGCTGGT
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
38 12 0.28
40 31 0.72
ACGTcount: A:0.18, C:0.12, G:0.34, T:0.35
Consensus pattern (38 bp):
ATGGTGTGTAGGGTTGGATAGGTCGATTTTATCCCCAC
Done.