Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 84 of 253
Found at i:25820314 original size:16 final size:17
Alignment explanation
Indices: 25820278--25820314 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
25820268 ATTCGATTAA
25820278 TAAACTAATTCATTTAT
1 TAAACTAATTCATTTAT
25820295 TAAA-TAATT-ATTTAT
1 TAAACTAATTCATTTAT
25820310 CTAAA
1 -TAAA
25820315 ATTGATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.32
16 9 0.47
17 4 0.21
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAACTAATTCATTTAT
Found at i:25822480 original size:43 final size:43
Alignment explanation
Indices: 25822398--25822553 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
25822388 TGAGACATCG
* * *
25822398 TGTAAGACCGTGTCTGGGACA-CAGGCCTCGAT-TGAGATTTACA
1 TGTAAGACCATGTCTGGGACATC-GGCATCGATAT-TGATTTACA
* * * *
25822441 TATAAGATCATGTCTGGTACATCGGCATC-ATATCTGATTT-CG
1 TGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGATTTACA
* ** *
25822483 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTACA
*
25822526 TGTAAGACCATGTCTGGGACGTCGGCAT
1 TGTAAGACCATGTCTGGGACATCGGCAT
25822554 TGTACTTGTT
Statistics
Matches: 89, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 31 0.35
43 57 0.64
44 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTACA
Found at i:25822532 original size:85 final size:85
Alignment explanation
Indices: 25822395--25822553 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 85
25822385 ATCTGAGACA
* * * *
25822395 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGATCATGTCTGGTA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCATGTCTGGGA
25822460 CATCGGCATCATATCTGATT
66 CATCGGCATCATATCTGATT
* *
25822480 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCATGTCTGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCATGTCTGG
*
25822543 GACGTCGGCAT
64 GACATCGGCAT
25822554 TGTACTTGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 59 0.91
86 1 0.02
87 5 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCATGTCTGGGA
CATCGGCATCATATCTGATT
Found at i:25835598 original size:27 final size:27
Alignment explanation
Indices: 25835568--25835723 Score: 222
Period size: 27 Copynumber: 5.8 Consensus size: 27
25835558 ATTACCAAAG
* *
25835568 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
25835595 TACCCTCGATTTACAGAATTACAATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
25835622 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
25835649 TACCCTCGATTTACAGAATTATCGTCT
1 TACCCTCGATTTACAGAATTACCATTT
*
25835676 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
25835703 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
25835724 TTGAAATACT
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:25835667 original size:81 final size:81
Alignment explanation
Indices: 25835541--25835723 Score: 242
Period size: 81 Copynumber: 2.3 Consensus size: 81
25835531 ATTATTGAAA
* * *
25835541 TACCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTA-CTATTTTACCCTCGAT
1 TACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTATC-ATCTTACCCTCGAT
25835605 TTACAGAATTACAATTT
65 TTACAGAATTACAATTT
* *** *
25835622 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTCGATT
1 TACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTATCATCTTACCCTCGATT
**
25835687 TACAGAATTACCGTTT
66 TACAGAATTACAATTT
* *
25835703 TACCCTCGATTTACAAAATTA
1 TACCCTCAATTTATAAAATTA
25835724 TTGAAATACT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 87 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTATCATCTTACCCTCGATT
TACAGAATTACAATTT
Found at i:25835743 original size:54 final size:54
Alignment explanation
Indices: 25835541--25835753 Score: 198
Period size: 54 Copynumber: 3.9 Consensus size: 54
25835531 ATTATTGAAA
* ** * * *
25835541 TACCCTCAATTTGTAAAATTA-CCAAAGTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATCGAAA-TACCCTCGATTTACAGAATTACCATTT
* * * *
25835595 TACCCTCGATTTACAGAATTA-C-AATTTTACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTATCGAA--ATACCCTCGATTTACAGAATTACCATTT
* *** *
25835649 TACCCTCGATTTACAGAATTATCGTCTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAGAATTACCATTT
* * * * *
25835703 TACCCTCGATTTACAAAATTATTGAAATACTCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAGAATTACCA
25835754 AAATACCCTT
Statistics
Matches: 133, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 130 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAGAATTACCATTT
Found at i:25835757 original size:27 final size:27
Alignment explanation
Indices: 25835727--25835872 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
25835717 AAAATTATTG
* * *
25835727 AAATACTCTTGGTTTACAAAATTACCA
1 AAATACCCCTGGTTTATAAAATTACCA
* * *
25835754 AAATA-CCCTTGATCAGTAAAATTACCA
1 AAATACCCCTGGTTTA-TAAAATTACCA
* *
25835781 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCCTGGTTTATAAAATTACCA
*
25835808 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCTGGTTTATAAAATTACCA
* * *
25835835 AAATACCCATGGCTTGTAAAATTACCA
1 AAATACCCCTGGTTTATAAAATTACCA
25835862 AAATACCCCTG
1 AAATACCCCTG
25835873 ATTTGTGAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.05
27 91 0.89
28 6 0.06
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATACCCCTGGTTTATAAAATTACCA
Found at i:25835788 original size:81 final size:81
Alignment explanation
Indices: 25835717--25835897 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
25835707 CTCGATTTAC
* *
25835717 AAAATTATTGAAATACTCTTGGTTTACAAAATTACCAAAATACCC-TTGATCAGTAAAATTACCA
1 AAAATTATTGAAATACTCTTGGTTTACAAAATTACCAAAATACCCATGGCT-AGTAAAATTACCA
*
25835781 AAATACCCCTGGTTTGT
65 AAATACCCCTGATTTGT
* * * * ** *
25835798 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCATGGCTTGTAAAATTACCAA
1 AAAATTATTGAAATACTCTTGGTTTACAAAATTACCAAAATACCCATGGCTAGTAAAATTACCAA
25835863 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
* *
25835879 GAAATTATCGAAATACTCT
1 AAAATTATTGAAATACTCT
25835898 CGATTTGTAA
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 80 0.96
82 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (81 bp):
AAAATTATTGAAATACTCTTGGTTTACAAAATTACCAAAATACCCATGGCTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:25835878 original size:27 final size:27
Alignment explanation
Indices: 25835744--25835978 Score: 217
Period size: 27 Copynumber: 8.7 Consensus size: 27
25835734 CTTGGTTTAC
* **
25835744 AAAATTACCAAAATACCCTTGATCAGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
25835771 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
25835798 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* **
25835825 AAAATTACCAAAATACCCATGGCTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
25835852 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
25835879 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * **
25835906 AAAA-TATCGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* * **
25835932 AGAATTACTAAAATACCCCTG-TAAGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
*
25835959 AAAATTACCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
25835979 ATAGGGTAGA
Statistics
Matches: 177, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 19 0.11
27 157 0.89
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:25835985 original size:54 final size:54
Alignment explanation
Indices: 25835904--25836101 Score: 238
Period size: 54 Copynumber: 3.7 Consensus size: 54
25835894 CTCTCGATTT
* *
25835904 GTAAAA-TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAG
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAG
* *
25835957 GTAAAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTAT-AG
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAG
* * * * *
25836010 GATAGAATTATCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTATAGG
1 G-TAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAG
* * * * * *
25836065 GTAGAATTACTGAGATACCCTTGTGGGGTAAAATTAC
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTAC
25836102 CATTTTGCCC
Statistics
Matches: 125, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 9 0.07
54 114 0.91
55 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAG
Found at i:25835986 original size:27 final size:27
Alignment explanation
Indices: 25835744--25836102 Score: 187
Period size: 27 Copynumber: 13.3 Consensus size: 27
25835734 CTTGGTTTAC
* *
25835744 AAAATTACCAAAATACCCTTGATCA--GT
1 AAAATTACCGAAATACCCCTG-T-AGGGT
* **
25835771 AAAATTACCAAAATACCCCTGGT-TTGT
1 AAAATTACCGAAATACCCCT-GTAGGGT
** **
25835798 AAAATTACTAAAATACCCCTGGT-TTGT
1 AAAATTACCGAAATACCCCT-GTAGGGT
* * ****
25835825 AAAATTACCAAAATACCCATGGCTTGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* **
25835852 AAAATTACCAAAATACCCCTG-ATTTGT
1 AAAATTACCGAAATACCCCTGTA-GGGT
* * * **
25835879 GAAATTATCGAAATA-CTCTCG-ATTTGT
1 AAAATTACCGAAATACCCCT-GTA-GGGT
*
25835906 AAAA-TATCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* ** *
25835932 AGAATTACTAAAATACCCCTGTAAGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
25835959 AAAATTACCGAAATACCCCTATAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * * *
25835986 AGAATTACTGAAATACCCCTATAGGAT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
25836013 AGAATTATCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
** *
25836040 AGAAA-TACTAAAATACCCCTATAGGGT
1 A-AAATTACCGAAATACCCCTGTAGGGT
* * * * *
25836067 AGAATTACTGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
25836094 AAAATTACC
1 AAAATTACC
25836103 ATTTTGCCCC
Statistics
Matches: 274, Mismatches: 47, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.08
27 249 0.91
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:25836029 original size:81 final size:81
Alignment explanation
Indices: 25835914--25836084 Score: 238
Period size: 81 Copynumber: 2.1 Consensus size: 81
25835904 GTAAAATATC
* * *
25835914 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTA-AAATTACCGAAATACCCC
1 GAAATACCCCTATAGGATAGAATTACTAAAATACCCCTGTAAGGTAGAAA-TACCAAAATACCCC
25835978 TATAGGGTAGAATTACT
65 TATAGGGTAGAATTACT
* * * *
25835995 GAAATACCCCTATAGGATAGAATTA-TCGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCC
1 GAAATACCCCTATAGGATAGAATTACT-AAAATACCCCTGTAAGGTAGAAATACCAAAATACCCC
25836059 TATAGGGTAGAATTACT
65 TATAGGGTAGAATTACT
*
25836076 GAGATACCC
1 GAAATACCC
25836085 TTGTGGGGTA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 1 0.01
81 76 0.95
82 3 0.04
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTATAGGATAGAATTACTAAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCT
ATAGGGTAGAATTACT
Found at i:25836338 original size:25 final size:25
Alignment explanation
Indices: 25836305--25836374 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
25836295 AGGAAGTGCT
*
25836305 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
25836330 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
25836355 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
25836375 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:25836387 original size:24 final size:25
Alignment explanation
Indices: 25836305--25836399 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
25836295 AGGAAGTGCT
*
25836305 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTATGCCCCAGTTTATCA
*
25836330 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
25836355 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
25836378 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
25836400 ATATAATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 45 0.73
26 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:25841239 original size:32 final size:32
Alignment explanation
Indices: 25841198--25841261 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
25841188 AACAAAATCA
25841198 GGTACAATTTAAGGACTGGATGTACTATTTAT
1 GGTACAATTTAAGGACTGGATGTACTATTTAT
*
25841230 GGTACAATTTAAGGATTGGATGTACTATTTAT
1 GGTACAATTTAAGGACTGGATGTACTATTTAT
25841262 TTGACAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (32 bp):
GGTACAATTTAAGGACTGGATGTACTATTTAT
Found at i:25844762 original size:11 final size:11
Alignment explanation
Indices: 25844737--25844770 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
25844727 GAACCCCAAG
25844737 CTTTCTCTATTT
1 CTTTCTCT-TTT
25844749 CTTTCTCTTTT
1 CTTTCTCTTTT
*
25844760 CTTTTTCTTTT
1 CTTTCTCTTTT
25844771 GGCCAAGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (11 bp):
CTTTCTCTTTT
Found at i:25846660 original size:51 final size:51
Alignment explanation
Indices: 25846583--25846723 Score: 230
Period size: 51 Copynumber: 2.8 Consensus size: 51
25846573 ACGGTGGCCT
*
25846583 TCACATAGTACCACCCTTGTAG-CCAAAGCTATTTGATTCACAAAGTAGCCC
1 TCACATAGTACCACCCTTGT-GTCCAAAGCTATTTTATTCACAAAGTAGCCC
* * *
25846634 TCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCT
1 TCACATAGTACCACCCTTGTGTCCAAAGCTATTTTATTCACAAAGTAGCCC
25846685 TCACATAGTACCACCCTTGTGTCCAAAGCTATTTTATTC
1 TCACATAGTACCACCCTTGTGTCCAAAGCTATTTTATTC
25846724 CTAAGGTTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
50 1 0.01
51 83 0.99
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (51 bp):
TCACATAGTACCACCCTTGTGTCCAAAGCTATTTTATTCACAAAGTAGCCC
Found at i:25846803 original size:52 final size:52
Alignment explanation
Indices: 25846747--25846865 Score: 202
Period size: 52 Copynumber: 2.3 Consensus size: 52
25846737 GGGAAATTTC
* *
25846747 TCACTTAGCACAATGCCGTGGACTTATTTCACTTAGATGTCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
* *
25846799 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
25846851 TCACTTAGCACAATG
1 TCACTTAGCACAATG
25846866 TCATATCCTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:25846827 original size:28 final size:27
Alignment explanation
Indices: 25846747--25846862 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
25846737 GGGAAATTTC
*
25846747 TCACTTAGCACAATGCCGTGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
*
25846775 TCACTTAG---ATGTCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
25846799 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
25846827 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
25846851 TCACTTAGCACA
1 TCACTTAGCACA
25846863 ATGTCATATC
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
24 44 0.57
25 1 0.01
27 2 0.03
28 30 0.39
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:25849306 original size:46 final size:49
Alignment explanation
Indices: 25849205--25849520 Score: 257
Period size: 46 Copynumber: 6.7 Consensus size: 49
25849195 GTTATAGTGG
** * *
25849205 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATG-AGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGA
*
25849253 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGA
* * * *
25849299 GCCAGTGTAAGA-CATGTCTAGGATAT-GCATCAG-CTACGAGATGT---
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTAGA
* * *
25849343 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-AGA
* * * *
25849393 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGA-TTTTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT-AGA
* * * * * * *
25849442 GTTAGTGAAAGACCATGTCTGAGACATGGCAT-TGACT--TGATGGATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA-GA
* *
25849489 GCCAGTGTAAGGCCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
25849521 TGGCATTATA
Statistics
Matches: 218, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.05
45 14 0.06
46 65 0.30
47 43 0.20
48 16 0.07
49 34 0.16
50 36 0.17
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGA
Found at i:25851361 original size:43 final size:42
Alignment explanation
Indices: 25851284--25851364 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
25851274 AGTGTTGGCC
* * *
25851284 ACACGGGCTGAGACACGGCCGTGTGTCTCAACCGTGTGAGGG
1 ACACGGCCTGAGACACGGCCGTGTGGCCCAACCGTGTGAGGG
*
25851326 ACACGGCCTGGAGACACAGG-CGTGTGGCCCGACCGTGTG
1 ACACGGCCT-GAGACAC-GGCCGTGTGGCCCAACCGTGTG
25851365 GTTCGATGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 8 0.24
43 23 0.70
44 2 0.06
ACGTcount: A:0.19, C:0.28, G:0.38, T:0.15
Consensus pattern (42 bp):
ACACGGCCTGAGACACGGCCGTGTGGCCCAACCGTGTGAGGG
Found at i:25851506 original size:21 final size:21
Alignment explanation
Indices: 25851482--25851521 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
25851472 TGTTTCATGG
*
25851482 GAAAATTTCCTAAGTTTTCCT
1 GAAAATTTCCAAAGTTTTCCT
* *
25851503 GAAACTTTTCAAAGTTTTC
1 GAAAATTTCCAAAGTTTTC
25851522 GGTTTAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.42
Consensus pattern (21 bp):
GAAAATTTCCAAAGTTTTCCT
Found at i:25855371 original size:28 final size:29
Alignment explanation
Indices: 25855299--25855396 Score: 77
Period size: 28 Copynumber: 3.6 Consensus size: 29
25855289 TACAAATGAT
25855299 TAAATA-T-TAAAAAAAT-TAAAAATAT-
1 TAAATATTATAAAAAAATATAAAAATATC
* * *
25855324 GAAA-ATTAATATAAACATATAAAAAT-TC
1 TAAATATT-ATAAAAAAATATAAAAATATC
25855352 TAAATATTATAAAAAAATATAAAAGA-ATC
1 TAAATATTATAAAAAAATATAAAA-ATATC
*
25855381 TAATAAATTA-AAAAAA
1 TAA-ATATTATAAAAAA
25855397 TAAAATTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
24 1 0.02
25 4 0.07
27 8 0.14
28 24 0.42
29 15 0.26
30 5 0.09
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (29 bp):
TAAATATTATAAAAAAATATAAAAATATC
Found at i:25855446 original size:73 final size:72
Alignment explanation
Indices: 25855309--25855469 Score: 168
Period size: 73 Copynumber: 2.2 Consensus size: 72
25855299 TAAATATTAA
* **
25855309 AAAAATTAAAAATATGAAAATTAATATAAACATATAAAAATTCTAAATATTATAAAAAAATATAA
1 AAAAATTAAAAAAATGAAAATTAATATAAACATATAAAAATTCTAAATACCATAAAAAAATAT-A
25855374 AAGAATC-T
65 AA-AATCAT
* * ***
25855382 AATAAATTAAAAAAAT-AAAATTAATA-AAACATATTTAAAATTTTAAA-ACCATTAAAATTCTA
1 AA-AAATTAAAAAAATGAAAATTAATATAAACATA-TAAAAATTCTAAATACCA-TAAAAAAATA
25855444 TAAAAATCAT
63 TAAAAATCAT
25855454 AAAAATATAAAAAAAT
1 AAAAAT-TAAAAAAAT
25855470 TATAAAAAGT
Statistics
Matches: 75, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
71 8 0.11
72 24 0.32
73 31 0.41
74 12 0.16
ACGTcount: A:0.65, C:0.05, G:0.01, T:0.29
Consensus pattern (72 bp):
AAAAATTAAAAAAATGAAAATTAATATAAACATATAAAAATTCTAAATACCATAAAAAAATATAA
AAATCAT
Found at i:25855486 original size:19 final size:19
Alignment explanation
Indices: 25855442--25855486 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25855432 ATTAAAATTC
25855442 TATAAAAATCATAAAAATA
1 TATAAAAATCATAAAAATA
* *
25855461 TAAAAAAATTATAAAAAGTA
1 TATAAAAATCATAAAAA-TA
25855481 T-TAAAA
1 TATAAAA
25855487 TTGATATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
TATAAAAATCATAAAAATA
Found at i:25855488 original size:48 final size:48
Alignment explanation
Indices: 25855432--25855525 Score: 118
Period size: 48 Copynumber: 2.0 Consensus size: 48
25855422 TTTTAAAACC
* * *
25855432 ATTAAAATT-CTATAAAAATCATAAAAATATAAAAAAATTATAAAAAGT
1 ATTAAAATTGATAT-AAAATCATAAAAATAAAAAAAAATCATAAAAAGT
* * *
25855480 ATTAAAATTGATATAAACTTATAAAAGTAAAAAAAAATCATAAAAA
1 ATTAAAATTGATATAAAATCATAAAAATAAAAAAAAATCATAAAAA
25855526 CATGAATTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 36 0.92
49 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (48 bp):
ATTAAAATTGATATAAAATCATAAAAATAAAAAAAAATCATAAAAAGT
Found at i:25855675 original size:14 final size:14
Alignment explanation
Indices: 25855638--25855681 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
25855628 TTGAACCATT
25855638 TTTTAAAATTTTTA
1 TTTTAAAATTTTTA
* * *
25855652 ATATATAATTTTTA
1 TTTTAAAATTTTTA
25855666 TTTTAAAA-TTTTA
1 TTTTAAAATTTTTA
25855679 TTT
1 TTT
25855682 AATTGAACTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTAAAATTTTTA
Found at i:25856077 original size:19 final size:19
Alignment explanation
Indices: 25856046--25856114 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
25856036 TTTAAATAAA
25856046 TTTTATTAA-ATTTATAATT
1 TTTTA-TAATATTTATAATT
* *
25856065 TTTTATATTATTT-T-ATGA
1 TTTTATAATATTTATAAT-T
* *
25856083 TTTTATAATATGTATAAGT
1 TTTTATAATATTTATAATT
25856102 TTTTATAAT-TTTA
1 TTTTATAATATTTA
25856115 ATAAGTTTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
17 2 0.05
18 17 0.44
19 19 0.49
20 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
TTTTATAATATTTATAATT
Found at i:25856154 original size:14 final size:15
Alignment explanation
Indices: 25856146--25856186 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
25856136 ATTTTAATTT
25856146 TTTAATTTTTTAATA
1 TTTAATTTTTTAATA
*
25856161 TTTAA-TATTTAATA
1 TTTAATTTTTTAATA
25856175 TTTAATATTTTT
1 TTTAAT-TTTTT
25856187 TATTTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 13 0.59
15 5 0.23
16 4 0.18
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTAATTTTTTAATA
Found at i:25856163 original size:10 final size:8
Alignment explanation
Indices: 25856137--25856213 Score: 68
Period size: 8 Copynumber: 9.6 Consensus size: 8
25856127 CAATTTAAAA
25856137 TTTTAATT
1 TTTTAATT
25856145 TTTTAATT
1 TTTTAATT
25856153 TTTTAA-T
1 TTTTAATT
*
25856160 ATTTAA-T
1 TTTTAATT
* *
25856167 ATTTAATA
1 TTTTAATT
*
25856175 TTTAATATT
1 TTTTA-ATT
*
25856184 TTTTATTT
1 TTTTAATT
*
25856192 TTTTATTT
1 TTTTAATT
25856200 TTTATAATT
1 TTT-TAATT
25856209 TTTTA
1 TTTTA
25856214 TAATTTTCAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
7 13 0.22
8 32 0.55
9 13 0.22
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTAATT
Found at i:25856214 original size:10 final size:10
Alignment explanation
Indices: 25856188--25856220 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
25856178 AATATTTTTT
25856188 ATTTTTT-T-
1 ATTTTTTATA
25856196 ATTTTTTATA
1 ATTTTTTATA
25856206 ATTTTTTATA
1 ATTTTTTATA
25856216 ATTTT
1 ATTTT
25856221 CAAGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 7 0.30
9 1 0.04
10 15 0.65
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:25859251 original size:39 final size:39
Alignment explanation
Indices: 25859207--25859478 Score: 463
Period size: 39 Copynumber: 7.0 Consensus size: 39
25859197 ATTATATTAT
* **
25859207 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
25859246 CAGCACGAAGCCTACGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
25859285 CAGCACGAAGCCTGCAGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
25859324 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
25859363 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
25859402 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
25859441 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTT
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTT
25859479 TCAGTGTCTT
Statistics
Matches: 222, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 222 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
Found at i:25874104 original size:27 final size:26
Alignment explanation
Indices: 25874056--25874115 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
25874046 GCGAGGCTGC
*
25874056 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
25874083 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
25874109 CATATAT
1 CAGATAT
25874116 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:25874144 original size:14 final size:14
Alignment explanation
Indices: 25874127--25874158 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
25874117 TATATATATA
25874127 TGTGTGTATGTGTG
1 TGTGTGTATGTGTG
25874141 TGTGTGTATGTGTG
1 TGTGTGTATGTGTG
25874155 TGTG
1 TGTG
25874159 GCAAAGCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.00, G:0.44, T:0.50
Consensus pattern (14 bp):
TGTGTGTATGTGTG
Found at i:25885940 original size:21 final size:21
Alignment explanation
Indices: 25885900--25885955 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
25885890 GTTCATATCT
25885900 TAAATATTAAATAAAAAATAC
1 TAAATATTAAATAAAAAATAC
* * *
25885921 TAAATGTTAAATAGACAATA-
1 TAAATATTAAATAAAAAATAC
*
25885941 TATATATTAAA-AAAA
1 TAAATATTAAATAAAA
25885956 CATAATATTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
19 2 0.07
20 9 0.32
21 17 0.61
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (21 bp):
TAAATATTAAATAAAAAATAC
Found at i:25886371 original size:11 final size:11
Alignment explanation
Indices: 25886355--25886388 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
25886345 GAAAAATCTT
25886355 AAAATTTAAAA
1 AAAATTTAAAA
*
25886366 AAAATTCAAAA
1 AAAATTTAAAA
*
25886377 AAAATATAAAA
1 AAAATTTAAAA
25886388 A
1 A
25886389 TAGAAAACCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (11 bp):
AAAATTTAAAA
Found at i:25890117 original size:18 final size:17
Alignment explanation
Indices: 25890096--25890143 Score: 69
Period size: 18 Copynumber: 2.8 Consensus size: 17
25890086 TTTTGTTTTT
*
25890096 TTTTTTAATTTTATGAA
1 TTTTTTATTTTTATGAA
*
25890113 CTTTTTATTTTTTATGAA
1 TTTTTTA-TTTTTATGAA
25890131 TTTTTTATTTTTA
1 TTTTTTATTTTTA
25890144 CAGATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (17 bp):
TTTTTTATTTTTATGAA
Found at i:25894050 original size:639 final size:639
Alignment explanation
Indices: 25892832--25894105 Score: 2075
Period size: 639 Copynumber: 2.0 Consensus size: 639
25892822 GCTTATTACA
25892832 CTTAAAAGATATATCATTTTAAGCTCACTATCTTACTCTTCACTTCCTTTATGCATACTTACTAC
1 CTTAAAAGATATATCATTTTAAGCTCACTATCTTACTCTTCACTTCCTTTATGCATACTTACTAC
* ** *
25892897 ATCTCATCATACACCAAGGTCTTGTTCATGGGTTTAGTATACATACCTGAAATCATTTGTCAAAT
66 ATCTCATCACACACCAAGGTCTTGTTCATGGGTTTAGTATACATACCTGAAATCATCCGTAAAAT
* * * * * *
25892962 ATCTTAATTTCATTCTCTATAATTACATACCTCATTGAATTTTTTCCCAAGTCGTTCTTTAAACT
131 ATCTCAATTTCAGTCTCTATAATAACATACCTCATTGAAGTTTTTCCCAACTCGTTCTTCAAACT
* * *
25893027 ACCCATTGAACACTCGAAATACTAGTGGATACACAGAAAGTTTACACTTAAGTGCCGTATCAGTA
196 ACCCATTGAACACTCGAAATACTAATGGATACACAGAAAGTTTACACTTAAGTGCCATATAAGTA
* *
25893092 GTCAGAGCTACCTCGTACTTTGTAATGCTCGCATTTTGAGTTACTCATGGGCCTTTTTGCCATGT
261 GTCAGAACTACCTCGTACTTTGTAATGCTCGCATTTTGAGTTACTCACGGGCCTTTTTGCCATGT
*
25893157 CAGTACCCGAACCCCATAACTCTATCATGTAATGCCCGCTCATTGAGCTATTCACGGGTCTACAC
326 CAGTACCCGAACCCCATAACTCTATCATGTAATGCCCGCTCATTGAGCTACTCACGGGTCTACAC
* * *
25893222 TCAAGGTCAGTACCCGGACCCACATTGCATATAACATTTATCTCATGAACTTAGACATAACTCAT
391 TCAAGGTCAGTACCCGGACCCACATTACATATAACATTTATCTCATGAAATCAGACATAACTCAT
* * * *
25893287 GAGTTCAGACCATTTAGTTCCTCATAACATACCTTTTGTATCCTATACTATTTTTGAGGTTCAAC
456 GAGTTCAGACCATATAGTTCCTCATAACATACCTTTTGTATCCTATACTATTTCTAAGGCTCAAC
* *
25893352 GGGATTTCATATTCAACCTGATGTCGTTGTACTTATTCACCATGTAAATTTCTCTTATATCACAA
521 AGGATTTCATATTCAACCTGATGTCGTCGTACTTATTCACCATGTAAATTTCTCTTATATCACAA
25893417 TATTTAAACTTCTATGGTAACAAGTAAGATTATATTACATGATAACGATATCAT
586 TATTTAAACTTCTATGGTAACAAGTAAGATTATATTACATGATAACGATATCAT
25893471 CTTAAAAGATATATCATTTTAAGCTCACTATCTTACTCTTCACTTCCTTTATGCATACTTACTAC
1 CTTAAAAGATATATCATTTTAAGCTCACTATCTTACTCTTCACTTCCTTTATGCATACTTACTAC
* * *
25893536 ATCTGATCACACACTACGGTCTTGTTCATGGGTTTAGTATACATACCTGAAATCATCCGTAAAAT
66 ATCTCATCACACACCAAGGTCTTGTTCATGGGTTTAGTATACATACCTGAAATCATCCGTAAAAT
* * *
25893601 ATCTCAATTTCGGTCTCTCTAATAACATACCTCATTGAAGTTTTTCCCAACTTGTTCTTCAAACT
131 ATCTCAATTTCAGTCTCTATAATAACATACCTCATTGAAGTTTTTCCCAACTCGTTCTTCAAACT
* * *
25893666 ACCTATTGAACACTCGAAATACTAATGTATACAC-GAAAATTTTACACTTAAGTGCCATATAAGT
196 ACCCATTGAACACTCGAAATACTAATGGATACACAG-AAAGTTTACACTTAAGTGCCATATAAGT
* * *
25893730 AGTTAGAACTACCTCGTACTTTGTAATGCTCGTATTTTGAGTTACTCACGGGCCTTTTTTCCATG
260 AGTCAGAACTACCTCGTACTTTGTAATGCTCGCATTTTGAGTTACTCACGGGCCTTTTTGCCATG
** * *
25893795 TTGGTACCC-AGACCCCATAACTCTATCATGTAATGCCTGCTCATTGAGCTACTCACGGGTCTGC
325 TCAGTACCCGA-ACCCCATAACTCTATCATGTAATGCCCGCTCATTGAGCTACTCACGGGTCTAC
*
25893859 ACTCAAGGTCAGTACCCGGACCCACATTACGTATAACATTTATCTCATGAAATCAGACATAACTC
389 ACTCAAGGTCAGTACCCGGACCCACATTACATATAACATTTATCTCATGAAATCAGACATAACTC
*
25893924 ATGAGTTCAGACCATATAGTTCCTCATGACATACCTTTTGTATCCTATACTATTTCTAAGGCTCA
454 ATGAGTTCAGACCATATAGTTCCTCATAACATACCTTTTGTATCCTATACTATTTCTAAGGCTCA
* * * *
25893989 ACAGGATTTCATTTTCAACCTGATGTCGTCGTACTTTTTCACCATGTAAATTTCTCTTATATTAT
519 ACAGGATTTCATATTCAACCTGATGTCGTCGTACTTATTCACCATGTAAATTTCTCTTATATCAC
* *
25894054 AATATTTAAGCTTCTATTGTAACAAGTAAGATTATATTACATGATAACGATA
584 AATATTTAAACTTCTATGGTAACAAGTAAGATTATATTACATGATAACGATA
25894106 GAACATTTAA
Statistics
Matches: 584, Mismatches: 49, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
638 2 0.00
639 582 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (639 bp):
CTTAAAAGATATATCATTTTAAGCTCACTATCTTACTCTTCACTTCCTTTATGCATACTTACTAC
ATCTCATCACACACCAAGGTCTTGTTCATGGGTTTAGTATACATACCTGAAATCATCCGTAAAAT
ATCTCAATTTCAGTCTCTATAATAACATACCTCATTGAAGTTTTTCCCAACTCGTTCTTCAAACT
ACCCATTGAACACTCGAAATACTAATGGATACACAGAAAGTTTACACTTAAGTGCCATATAAGTA
GTCAGAACTACCTCGTACTTTGTAATGCTCGCATTTTGAGTTACTCACGGGCCTTTTTGCCATGT
CAGTACCCGAACCCCATAACTCTATCATGTAATGCCCGCTCATTGAGCTACTCACGGGTCTACAC
TCAAGGTCAGTACCCGGACCCACATTACATATAACATTTATCTCATGAAATCAGACATAACTCAT
GAGTTCAGACCATATAGTTCCTCATAACATACCTTTTGTATCCTATACTATTTCTAAGGCTCAAC
AGGATTTCATATTCAACCTGATGTCGTCGTACTTATTCACCATGTAAATTTCTCTTATATCACAA
TATTTAAACTTCTATGGTAACAAGTAAGATTATATTACATGATAACGATATCAT
Found at i:25899248 original size:68 final size:65
Alignment explanation
Indices: 25899175--25899323 Score: 165
Period size: 66 Copynumber: 2.2 Consensus size: 65
25899165 CATCATGTGT
* * * * *
25899175 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTATGT-GTACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTAGGACACCAT
25899239 GTAG
62 GTAG
** * *
25899243 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGT-AGGACACCATGTA
25899308 G
65 G
25899309 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
25899324 GATAAACTGG
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
64 25 0.36
65 3 0.04
66 28 0.41
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTAGGACACCATGTAG
Found at i:25902876 original size:40 final size:38
Alignment explanation
Indices: 25902839--25903009 Score: 234
Period size: 39 Copynumber: 4.3 Consensus size: 38
25902829 GGACTAAGAT
25902839 CCGAAGGCATTTGTGCGAGTTACTAATTCAGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAATTC-GGGCTAAGC
25902878 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAA-TTCGGGCTAAGC
* * *
25902917 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACT-AATTCGGGCTAAG-C
** *
25902957 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-ATTCGGGCTAAG-C
25902997 CCGAAGGCATTTG
1 CCGAAGGCATTTG
25903010 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
39 68 0.56
40 53 0.44
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGTTACTAATTCGGGCTAAGC
Found at i:25902885 original size:39 final size:40
Alignment explanation
Indices: 25902786--25903009 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
25902776 TCGAATGATG
* * *
25902786 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
25902825 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
25902866 TCAGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
25902905 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
25902944 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25902983 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25903010 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 72 0.45
40 78 0.48
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:25903031 original size:79 final size:79
Alignment explanation
Indices: 25902786--25903042 Score: 229
Period size: 79 Copynumber: 3.3 Consensus size: 79
25902776 TCGAATGATG
* * * * * *
25902786 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
* ** *
25902849 TTGTGCGAGTTACTAAT
63 TGGAACGAGTTACTAAA
* * **
25902866 TCAGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
**
25902930 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
*
25902944 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
* *
25903008 TGAACGAG-TAGCTATA
64 GGAACGAGTTA-CTAAA
* *
25903024 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
25903043 TACGTGATTC
Statistics
Matches: 150, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 36 0.24
79 70 0.47
80 44 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:25908642 original size:39 final size:40
Alignment explanation
Indices: 25908541--25908764 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
25908531 TCGAATGATG
* * *
25908541 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
25908580 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
25908621 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
25908660 TCTGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
25908699 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25908738 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25908765 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 72 0.45
40 79 0.49
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:25908787 original size:79 final size:79
Alignment explanation
Indices: 25908541--25908764 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 79
25908531 TCGAATGATG
* * * * *
25908541 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
25908604 TTGTGCGAGTTACTAA
64 TTGTGCGAGTTACTAA
* * *
25908620 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCTGGGCTAAG-CCCAAAGGCAT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
*
25908682 TGGTGCGAGTTACTAAA
64 TTGTGCGAGTTACT-AA
* *
25908699 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
25908764 G
66 G
25908765 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 33 0.27
79 60 0.48
80 31 0.25
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAA
Found at i:25908795 original size:79 final size:79
Alignment explanation
Indices: 25908609--25908797 Score: 206
Period size: 79 Copynumber: 2.4 Consensus size: 79
25908599 GGCATTTGTG
* * * * *
25908609 CGAGTTACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCC
1 CGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCC
**
25908673 CAAAGGCATTGGTG
66 CAAAGGCATTGGAA
* *
25908687 CGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGT
1 CGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-
* *
25908751 CCCGAAGGCATTTGAA
64 CCCAAAGGCATTGGAA
* *
25908767 CGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
25908798 TACGTGATTC
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
78 20 0.22
79 50 0.54
80 23 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCC
CAAAGGCATTGGAA
Found at i:25917159 original size:31 final size:31
Alignment explanation
Indices: 25917121--25917184 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
25917111 CCTTTTCATA
25917121 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
25917152 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
25917183 TT
1 TT
25917185 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:25917433 original size:25 final size:25
Alignment explanation
Indices: 25917405--25917476 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
25917395 CTCTTTTAAT
25917405 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
25917430 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
25917455 AACTGGGGCATAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
25917477 CACTTCCTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:25917545 original size:20 final size:20
Alignment explanation
Indices: 25917522--25917588 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
25917512 TTATTAATAC
25917522 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25917542 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25917562 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
25917582 ATCATGT
1 ATCATGT
25917589 ATATCAAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25917553 original size:11 final size:11
Alignment explanation
Indices: 25917522--25917577 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
25917512 TTATTAATAC
25917522 ATCATGTGCAT
1 ATCATGTGCAT
*
25917533 ATCA--TACAT
1 ATCATGTGCAT
25917542 ATCATGTGCAT
1 ATCATGTGCAT
*
25917553 ATCA--TACAT
1 ATCATGTGCAT
25917562 ATCATGTGCAT
1 ATCATGTGCAT
25917573 ATCAT
1 ATCAT
25917578 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:25917594 original size:9 final size:10
Alignment explanation
Indices: 25917522--25917594 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 10
25917512 TTATTAATAC
25917522 ATCATGTGCAT
1 ATCATGT-CAT
*
25917533 ATCAT-ACAT
1 ATCATGTCAT
25917542 ATCATGTGCAT
1 ATCATGT-CAT
*
25917553 ATCAT-ACAT
1 ATCATGTCAT
25917562 ATCATGTGCAT
1 ATCATGT-CAT
*
25917573 ATCATATCA-
1 ATCATGTCAT
25917582 ATCATGT-AT
1 ATCATGTCAT
25917591 ATCA
1 ATCA
25917595 AAACCCATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.51
10 2 0.04
11 22 0.43
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:25918799 original size:10 final size:10
Alignment explanation
Indices: 25918784--25918808 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
25918774 TTCGCCTAGG
25918784 GAAGAAAAAA
1 GAAGAAAAAA
25918794 GAAGAAAAAA
1 GAAGAAAAAA
25918804 GAAGA
1 GAAGA
25918809 CTACTCCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (10 bp):
GAAGAAAAAA
Found at i:25921641 original size:36 final size:36
Alignment explanation
Indices: 25921594--25921666 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
25921584 TGAAAATATC
25921594 TCTAGAAGTTTTCTAAAATAATTTCTTCAAAGAATT
1 TCTAGAAGTTTTCTAAAATAATTTCTTCAAAGAATT
25921630 TCTAGAAGTTTTCTAAAATAATTTCTTCAAAGAATT
1 TCTAGAAGTTTTCTAAAATAATTTCTTCAAAGAATT
25921666 T
1 T
25921667 TTTCTCTACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.42
Consensus pattern (36 bp):
TCTAGAAGTTTTCTAAAATAATTTCTTCAAAGAATT
Found at i:25925693 original size:27 final size:26
Alignment explanation
Indices: 25925643--25925702 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
25925633 CGCCATATAT
*
25925643 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* *
25925669 ATATCTGTATCTGGTGACTTCGCCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
25925696 ATATCTG
1 ATATCTG
25925703 GCAGCCTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:26000951 original size:18 final size:18
Alignment explanation
Indices: 26000909--26000951 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26000899 GCCCATTCCG
*
26000909 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
26000927 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
26000945 AAGTATG
1 AAGTATG
26000952 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:26001554 original size:27 final size:27
Alignment explanation
Indices: 26001418--26001541 Score: 212
Period size: 27 Copynumber: 4.6 Consensus size: 27
26001408 TAAATTGTAC
*
26001418 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
*
26001446 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGATTATAT
26001473 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
26001500 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
*
26001527 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26001542 GACTTAATAT
Statistics
Matches: 94, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 77 0.82
28 17 0.18
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:26009787 original size:28 final size:28
Alignment explanation
Indices: 26009722--26009872 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
26009712 GAGATTGGCG
* * * *
26009722 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
26009751 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
26009779 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
26009807 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
26009835 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
26009862 CTGAGTGTGCG
1 CTAAGTGTGCG
26009873 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:26015930 original size:14 final size:14
Alignment explanation
Indices: 26015906--26015940 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26015896 TTAAATATTT
26015906 ATAAT-GTTTAATC
1 ATAATGGTTTAATC
*
26015919 ATAATGGTTTAATT
1 ATAATGGTTTAATC
26015933 ATAATGGT
1 ATAATGGT
26015941 ATATTCATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (14 bp):
ATAATGGTTTAATC
Found at i:26016738 original size:43 final size:43
Alignment explanation
Indices: 26016657--26016859 Score: 221
Period size: 43 Copynumber: 4.7 Consensus size: 43
26016647 GCTTTTTTGA
* *
26016657 GAAAAGCGTCGCTAAAGG-CATGTTCTTTAGCGGCGTTTGTAT
1 GAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTAT
** *
26016699 GAAAAGCGCCGCTAAAGGTCGCGTTCTTTAGCAGCGTTTGTGT
1 GAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTAT
* * * * *
26016742 GAAAAGTGCCACTAAATGTCACGTTCTTTAGCAGCATTTGTA-
1 GAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTAT
* * * *
26016784 CAGGAAGCACCGGTAAAGGTCATGTTCTTTAGCAGCGTTTGTAT
1 GA-AAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTAT
** **
26016828 GGTAAGCGCCATTAAAGGTCATGTTCTTTAGC
1 GAAAAGCGCCGCTAAAGGTCATGTTCTTTAGC
26016860 GGCACTTTCT
Statistics
Matches: 132, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
42 18 0.14
43 114 0.86
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
GAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTAT
Found at i:26022712 original size:44 final size:44
Alignment explanation
Indices: 26022658--26022777 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 44
26022648 TTTACAGATA
26022658 TTGTTCCAAGTTTGTTCCAATGCATCTAATTTAAATTACAAAGT
1 TTGTTCCAAGTTTGTTCCAATGCATCTAATTTAAATTACAAAGT
* ** * *
26022702 TTGTTCCAAGTTTGGTGTAATGCATCTCATTTAAATTATAAAGT
1 TTGTTCCAAGTTTGTTCCAATGCATCTAATTTAAATTACAAAGT
* * * *
26022746 TTGTTCCAAATTTCTTTCAATGCATTTAATTT
1 TTGTTCCAAGTTTGTTCCAATGCATCTAATTT
26022778 TTGCATGTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (44 bp):
TTGTTCCAAGTTTGTTCCAATGCATCTAATTTAAATTACAAAGT
Found at i:26025096 original size:14 final size:14
Alignment explanation
Indices: 26025077--26025108 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26025067 ATCAAAACAC
26025077 ATAAATATAATAAA
1 ATAAATATAATAAA
*
26025091 ATAAATATAGTAAA
1 ATAAATATAATAAA
26025105 ATAA
1 ATAA
26025109 TATCATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
ATAAATATAATAAA
Found at i:26025506 original size:17 final size:17
Alignment explanation
Indices: 26025484--26025520 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26025474 CATACTGAAC
26025484 AAATCACAAT-AGACACT
1 AAATCACAATAAG-CACT
26025501 AAATCACAATAAGCACT
1 AAATCACAATAAGCACT
26025518 AAA
1 AAA
26025521 CTAAACAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.57, C:0.22, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATCACAATAAGCACT
Found at i:26026861 original size:27 final size:29
Alignment explanation
Indices: 26026831--26026887 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
26026821 ACTCTAATTT
26026831 TAAATA-ATTCAAAGAAATAT-ATAA-AAA
1 TAAATATATTCAAA-AAATATAATAATAAA
*
26026858 TAAATATTTTCAAAAAATATAATAATAAA
1 TAAATATATTCAAAAAATATAATAATAAA
26026887 T
1 T
26026888 TTAAATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 12 0.46
28 10 0.38
29 4 0.15
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.32
Consensus pattern (29 bp):
TAAATATATTCAAAAAATATAATAATAAA
Found at i:26032209 original size:25 final size:24
Alignment explanation
Indices: 26032176--26032229 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
26032166 GGGCGGATTT
*
26032176 TTATTTTATTTAATATTATTATAA
1 TTATTTTATTTAATATTAATATAA
26032200 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATATTAATATAA
*
26032225 ATATT
1 TTATT
26032230 GATATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:26032467 original size:20 final size:20
Alignment explanation
Indices: 26032444--26032485 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26032434 TTTTGGGTGT
* * *
26032444 TTAAATTAATTTTTTTATAA
1 TTAAATGAATATTTGTATAA
26032464 TTAAATGAATATTTGTATAA
1 TTAAATGAATATTTGTATAA
26032484 TT
1 TT
26032486 TACTCTAAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TTAAATGAATATTTGTATAA
Found at i:26033208 original size:17 final size:18
Alignment explanation
Indices: 26033186--26033221 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
26033176 TTATATAGAA
26033186 TTTTTAA-TTTTTTATAT
1 TTTTTAAGTTTTTTATAT
26033203 TTTTTAAGTTTTTTTATAT
1 TTTTTAAG-TTTTTTATAT
26033222 ATTCTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
19 10 0.59
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTAAGTTTTTTATAT
Found at i:26037223 original size:39 final size:39
Alignment explanation
Indices: 26037162--26037240 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
26037152 TAAACATGAC
* ** *
26037162 TTAAGACACATAATAATGATGTAA-TAAACTAGGACATAA
1 TTAACACACATAATAAACATGTAATTAAAC-AAGACATAA
*
26037201 TTAACACACATATTAAACATGTAATTAAACAAGACATAA
1 TTAACACACATAATAAACATGTAATTAAACAAGACATAA
26037240 T
1 T
26037241 AATTTAAGAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 29 0.85
40 5 0.15
ACGTcount: A:0.52, C:0.13, G:0.09, T:0.27
Consensus pattern (39 bp):
TTAACACACATAATAAACATGTAATTAAACAAGACATAA
Found at i:26060016 original size:15 final size:15
Alignment explanation
Indices: 26059996--26060047 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
26059986 ACTACAAAAC
26059996 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
26060011 ATTTATAATTGGAATAAAT
1 ATTTATTATT--AAT--AT
*
26060030 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
26060045 ATT
1 ATT
26060048 AATATTCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 14 0.47
17 5 0.17
19 11 0.37
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:26060161 original size:22 final size:22
Alignment explanation
Indices: 26060121--26060176 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
26060111 AATAAAATTG
*
26060121 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
26060141 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
26060163 TATTAATAATTTAT
1 AAATAATAAATTAT
26060177 TATATGGCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:26060865 original size:7 final size:7
Alignment explanation
Indices: 26060855--26060880 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26060845 AAAATATTAC
26060855 TTAAATA
1 TTAAATA
26060862 TTAAATA
1 TTAAATA
26060869 TTAAATA
1 TTAAATA
26060876 TTAAA
1 TTAAA
26060881 CATAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TTAAATA
Found at i:26061541 original size:20 final size:20
Alignment explanation
Indices: 26061476--26061554 Score: 65
Period size: 19 Copynumber: 4.0 Consensus size: 20
26061466 AAAATTATTA
*
26061476 TTTTAGAATTTTTTTAAAAAA
1 TTTTAGAATTTTTTT-AAAAT
* * *
26061497 ATTT--AACTTTTTTATATAT
1 TTTTAGAATTTTTTTA-AAAT
26061516 TCTTTAGAATTTTTTTAAAAT
1 T-TTTAGAATTTTTTTAAAAT
*
26061537 TTTTATAA-TTTTTTAAAA
1 TTTTAGAATTTTTTTAAAA
26061555 AAATATAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
18 1 0.02
19 20 0.43
20 9 0.20
21 7 0.15
22 9 0.20
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTAGAATTTTTTTAAAAT
Found at i:26061555 original size:20 final size:19
Alignment explanation
Indices: 26061485--26061555 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
26061475 ATTTTAGAAT
** *
26061485 TTTTTTAAAAAAATTTAAC
1 TTTTTTAAAAATTTTTAAA
* *
26061504 TTTTTTATATATTCTTTAGAA
1 TTTTTTAAAAATT-TTTA-AA
*
26061525 TTTTTTTAAAATTTTTATAA
1 TTTTTTAAAAATTTTTA-AA
26061545 TTTTTTAAAAA
1 TTTTTTAAAAA
26061556 AATATAATTT
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
19 9 0.22
20 20 0.50
21 11 0.28
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (19 bp):
TTTTTTAAAAATTTTTAAA
Found at i:26061579 original size:18 final size:18
Alignment explanation
Indices: 26061558--26061613 Score: 51
Period size: 19 Copynumber: 3.1 Consensus size: 18
26061548 TTTAAAAAAA
26061558 TATAATTTTTTTTATTTT
1 TATAATTTTTTTTATTTT
* *
26061576 TATAAATATTTTGTA-TTT
1 TAT-AATTTTTTTTATTTT
* *
26061594 TAGATTTTTTTTTAATTTT
1 TATAATTTTTTTT-ATTTT
26061613 T
1 T
26061614 TTTGAGAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 7 0.24
18 9 0.31
19 13 0.45
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (18 bp):
TATAATTTTTTTTATTTT
Found at i:26062857 original size:5 final size:5
Alignment explanation
Indices: 26062847--26062874 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
26062837 AATTGCCTTT
26062847 AAGAA AAGAA AAGAA AAGAA AAGAA AAG
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAG
26062875 GGGCCTGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:26065434 original size:41 final size:41
Alignment explanation
Indices: 26065334--26065520 Score: 242
Period size: 41 Copynumber: 4.7 Consensus size: 41
26065324 AATACTCGAT
*
26065334 ATCTCGCACACTAAGTG---TACATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
*
26065372 A-ATCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
* * **
26065412 ATCTCACACACTAAGTGCCATATGTAGCCGAAGCTATCTTG
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
*
26065453 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTC-A
* *
26065495 A--TCGCACATTAAGTGCCACATATAGC
1 ATCTCGCACACTAAGTGCCATATATAGC
26065521 TGATTTGTTG
Statistics
Matches: 130, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
37 14 0.11
38 1 0.01
40 44 0.34
41 70 0.54
42 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
Found at i:26067466 original size:49 final size:49
Alignment explanation
Indices: 26067412--26067638 Score: 265
Period size: 49 Copynumber: 4.6 Consensus size: 49
26067402 CTGGTACGCA
*
26067412 TAGTAGCCTGCACATAGTACTACACATGTAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATCCGGTACACG
* * * *
26067461 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATGATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATCCGGTACACG
* * ** * *
26067510 CAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTAACC-AATTATCCGGTACACG
* * * * * * *
26067560 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGT-AAC-CAATTATCCGGTACACG
26067611 TAGTAGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
26067639 CGACCTCACA
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 75 0.50
50 38 0.25
51 36 0.24
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTAACCAATTATCCGGTACACG
Found at i:26067644 original size:101 final size:99
Alignment explanation
Indices: 26067404--26067644 Score: 326
Period size: 99 Copynumber: 2.4 Consensus size: 99
26067394 AAAGCTATCT
* * ** *
26067404 GGTACGCATAGTAGCCTGCACATAGTACTACACATGTAACC-AATTATCCGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCCGATACACGTAGTAGC
26067468 CTGCACTTAGTACTACACACGTGACCAATGATCC
66 CTGCACTTAGTACTACACACGTGACCAATGATCC
*
26067502 GGTA--CATGCAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTA
1 GGTACGCAT--AGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCCGATACACGTAGTA
* ** *
26067565 GCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
64 GCCTGCACTTAGTACTACACACGTGA-C-CAATGATCC
*
26067603 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCT
26067645 CACAATAGAT
Statistics
Matches: 125, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
96 3 0.02
98 34 0.27
99 43 0.34
100 1 0.01
101 41 0.33
103 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCCGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCAATGATCC
Found at i:26072162 original size:55 final size:55
Alignment explanation
Indices: 26072078--26072189 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
26072068 CTATGGCTTC
* * *
26072078 TTCTTCTTTGTATTTTCGGCTAGTGATGAAGATGATAGTATAAAAATTGTATTTT
1 TTCTTCTTTGTATTTTCAGCTAGTGATGAAGATGATAGCATAAAAATTATATTTT
26072133 TTCTTCTTTGTATTTTCAGCTAGTGATGAAGATGATAGCATAAAAATTATATTTT
1 TTCTTCTTTGTATTTTCAGCTAGTGATGAAGATGATAGCATAAAAATTATATTTT
26072188 TT
1 TT
26072190 TATTTAATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.47
Consensus pattern (55 bp):
TTCTTCTTTGTATTTTCAGCTAGTGATGAAGATGATAGCATAAAAATTATATTTT
Found at i:26075054 original size:101 final size:99
Alignment explanation
Indices: 26074923--26075110 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
26074913 TGGTTTTAGG
* *
26074923 TCACGTGTGTAATACAAAGTGCAGGCTACTACGTGTACCAGATAGTTAGTTCGTATGTGTAGCAC
1 TCACGTGTGTAATACAAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCGCATGTGTAGCAC
*
26074988 AAAGTGCAGGCTATTATGCGTACCTGACAATTTCAA
65 -AAGTGCAGGCTACTATGCGTACCTGACAATTTCAA
* * ** * *
26075024 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTGTTGGTCGCATGTGTAGTACA
1 TCACGTGTGTAATACAAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGCACA
*
26075089 AGTGCAGGCTACTATGTGTACC
66 AGTGCAGGCTACTATGCGTACC
26075111 AGATAGCTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 21 0.27
100 14 0.18
101 42 0.55
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAATACAAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGCACA
AGTGCAGGCTACTATGCGTACCTGACAATTTCAA
Found at i:26075334 original size:16 final size:15
Alignment explanation
Indices: 26075313--26075342 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26075303 AAATGTAGTA
26075313 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26075329 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26075343 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26080179 original size:49 final size:49
Alignment explanation
Indices: 26080059--26080188 Score: 125
Period size: 49 Copynumber: 2.7 Consensus size: 49
26080049 CTTGTTGTGT
* * * * * *
26080059 GTCAGTATAAGATCTGTCTGGGATATGGCATTGACATCGATAAATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAAACGAAA
* * * * * *
26080108 GCCAGTGTAAAACCTATCTGGGACATGGCATCGACCTTGATATACGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAAACGAAA
* * *
26080157 GTCAGTGTAAGACCTGTTTGGGAGACGGCATC
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATC
26080189 AACTTTAATG
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
49 63 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAAACGAAA
Found at i:26081675 original size:27 final size:27
Alignment explanation
Indices: 26081645--26081701 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
26081635 CAAATCATTT
26081645 CCAAAGTGTGTTTTGGGCCTCATAGGC
1 CCAAAGTGTGTTTTGGGCCTCATAGGC
26081672 CCAAAGTGTGTTTTGGGCCTCATAGGC
1 CCAAAGTGTGTTTTGGGCCTCATAGGC
26081699 CCA
1 CCA
26081702 TATTAAGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (27 bp):
CCAAAGTGTGTTTTGGGCCTCATAGGC
Found at i:26087002 original size:81 final size:81
Alignment explanation
Indices: 26086876--26087075 Score: 253
Period size: 81 Copynumber: 2.5 Consensus size: 81
26086866 ACGATTCTTA
* * * *
26086876 ACACTGGTTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGGCCACTGGCTCGAAGGCCCTTCGAA
1 ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTGGCTCAAAAGCCCTTCGAA
26086940 ACTAAGTCCGGTTATG
66 ACTAAGTCCGGTTATG
* *
26086956 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G-CACTGGCTCAAAAGCCCTTCG
1 ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAGGCCACTGGCTCAAAAGCCCTTCG
* * * *
26087019 TAATTAAGTTCGGTTATT
64 AAACTAAGTCCGGTTATG
*
26087037 AGCACTGGCTCAAAAGCCCTTCGAACCCAAGCTCGGATT
1 A-CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATT
26087076 TACACCCCGA
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
80 12 0.12
81 55 0.53
82 32 0.31
83 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (81 bp):
ACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGGCCACTGGCTCAAAAGCCCTTCGAA
ACTAAGTCCGGTTATG
Found at i:26087014 original size:41 final size:41
Alignment explanation
Indices: 26086877--26087061 Score: 234
Period size: 41 Copynumber: 4.6 Consensus size: 41
26086867 CGATTCTTAA
* * * *
26086877 CACTGGTTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * *
26086916 CCACTGGCTCGAAGGCCCTTCGAAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
26086957 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
26086998 CACTGGCTCAAAAGCCCTTCGTAATTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
26087039 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
26087062 CCCAAGCTCG
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
40 44 0.35
41 80 0.63
43 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:26090980 original size:28 final size:28
Alignment explanation
Indices: 26090948--26091041 Score: 125
Period size: 28 Copynumber: 3.4 Consensus size: 28
26090938 GTACTCAGTA
*
26090948 TACGAAATATTGAGAATGGCACTTAGTG
1 TACGAAATATTGAGAATGACACTTAGTG
26090976 TACGAAATATTGAGAATGACACTTAGTG
1 TACGAAATATTGAGAATGACACTTAGTG
** * *
26091004 TGTGAGATATTGAGAATGACACTTCGTG
1 TACGAAATATTGAGAATGACACTTAGTG
* *
26091032 TGCAAAATAT
1 TACGAAATAT
26091042 CGAATGATTC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (28 bp):
TACGAAATATTGAGAATGACACTTAGTG
Found at i:26091254 original size:43 final size:44
Alignment explanation
Indices: 26091153--26091266 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
26091143 TTTATAATGG
* * * *
26091153 TGATATTCGGGCTTTGAGCCTAGCAAGCTTTAAGCTGGTGAATAA
1 TGATA-TCGGGCTTCGAGCCTAGCAGGCTATAAGCCGGTGAATAA
*
26091198 T-ATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTG-A-AA
1 TGA-TATCGGGCTTCGAGCCTAGCAGGCTATAA-GCCGGTGAATAA
*
26091241 TGATATCGGGCTTCAAGCCTAGCAGG
1 TGATATCGGGCTTCGAGCCTAGCAGG
26091267 AAAAATACCG
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
43 24 0.41
44 26 0.44
45 9 0.15
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (44 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAAGCCGGTGAATAA
Found at i:26095064 original size:12 final size:12
Alignment explanation
Indices: 26095047--26095073 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26095037 CACACATGCT
26095047 CGTGTGCTAGGC
1 CGTGTGCTAGGC
26095059 CGTGTGCTAGGC
1 CGTGTGCTAGGC
26095071 CGT
1 CGT
26095074 ACCAAACCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.41, T:0.26
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:26096148 original size:41 final size:41
Alignment explanation
Indices: 26096087--26096236 Score: 196
Period size: 41 Copynumber: 3.7 Consensus size: 41
26096077 AATACTCGAT
* *
26096087 ATCTTGCACACTATGTGCCATATATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
* * **
26096128 ATCTCACACACTAAGTGCCATATGTAGCCGAAGCTATCTTG
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
* *
26096169 ATCTCGCACACTAAGTGCCATATATAGCCGAAGTTATGTCGA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTC-A
*
26096211 A--TCGCACACTAAGTGCCACATATAGC
1 ATCTCGCACACTAAGTGCCATATATAGC
26096237 TGATTTGTCG
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
40 24 0.25
41 70 0.74
42 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCA
Found at i:26105735 original size:55 final size:54
Alignment explanation
Indices: 26105605--26105737 Score: 144
Period size: 55 Copynumber: 2.4 Consensus size: 54
26105595 AGGATACCAA
* * * *
26105605 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAAGAAAATCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAGAAAATCAT
** * * *
26105659 GTAAGACCATGTTAAGACATGGCATTGATAAACTACTATAAGGC-A-AAGATCCTAT
1 GTAAGACCATGCCAAGGCATGGCATTGAT-AACTACTACAAGGCAAGAAAAT-C-AT
26105714 GTAAGACCATGCCAAGGCATGGCA
1 GTAAGACCATGCCAAGGCATGGCA
26105738 ATGGTAAGTT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
53 4 0.06
54 26 0.41
55 34 0.53
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (54 bp):
GTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAGAAAATCAT
Found at i:26105788 original size:53 final size:54
Alignment explanation
Indices: 26105594--26105799 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
26105584 ATTAGGGTTT
* * * * *
26105594 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * ** * * * *
26105648 AAGAAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* *
26105703 AAAGAT-CCTATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTC-ATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * *
26105756 AAGGATACCACGTAATACCATGTCAAGACATGGAAATGGTAAGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGT
26105800 ATATAAAGGA
Statistics
Matches: 120, Mismatches: 29, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
53 42 0.35
54 38 0.32
55 40 0.33
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:26108910 original size:32 final size:32
Alignment explanation
Indices: 26108874--26108957 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 32
26108864 CAGTAGCGGC
* * *
26108874 ATTATAATTGGCACAAAGCCATCGGTAACTGT
1 ATTATAATTGGCACAAAGCCATCAGCAACGGT
** *
26108906 ATTATGTTTGGCACATAGCCATCAGCAACGGT
1 ATTATAATTGGCACAAAGCCATCAGCAACGGT
* * *
26108938 AATATAATCGGCACACAGCC
1 ATTATAATTGGCACAAAGCC
26108958 TTGGGTAAAT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (32 bp):
ATTATAATTGGCACAAAGCCATCAGCAACGGT
Found at i:26109144 original size:9 final size:9
Alignment explanation
Indices: 26109130--26109154 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26109120 CCACAGTCGT
26109130 CTCGTGCGA
1 CTCGTGCGA
26109139 CTCGTGCGA
1 CTCGTGCGA
26109148 CTCGTGC
1 CTCGTGC
26109155 TACCCTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.36, G:0.32, T:0.24
Consensus pattern (9 bp):
CTCGTGCGA
Found at i:26109463 original size:54 final size:54
Alignment explanation
Indices: 26109417--26109522 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
26109407 TTTATCCTAC
* *
26109417 AGGGGTATTTTGATAATTTTACACTACAAGGGTATTTCAGTAATTTTACAAACT
1 AGGGGTATTTCGATAATTTTACAATACAAGGGTATTTCAGTAATTTTACAAACT
* * * * * *
26109471 GGGGGTATTTCGGTAATTTTACAATCCAGGGGTATTTCGGTAGTTTTACAAA
1 AGGGGTATTTCGATAATTTTACAATACAAGGGTATTTCAGTAATTTTACAAA
26109523 TCGGGGTCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTCGATAATTTTACAATACAAGGGTATTTCAGTAATTTTACAAACT
Found at i:26109521 original size:27 final size:27
Alignment explanation
Indices: 26109416--26109521 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
26109406 TTTTATCCTA
* * * *
26109416 CAGGGGTATTTTGATAATTTTACACTA
1 CAGGGGTATTTCGGTAATTTTACAATC
* * *
26109443 CAAGGGTATTTCAGTAATTTTACAAAC
1 CAGGGGTATTTCGGTAATTTTACAATC
**
26109470 TGGGGGTATTTCGGTAATTTTACAATC
1 CAGGGGTATTTCGGTAATTTTACAATC
*
26109497 CAGGGGTATTTCGGTAGTTTTACAA
1 CAGGGGTATTTCGGTAATTTTACAA
26109522 ATCGGGGTCT
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAATC
Found at i:26111324 original size:13 final size:13
Alignment explanation
Indices: 26111306--26111331 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26111296 TTAGTTTACT
26111306 CCTCCAACAACCC
1 CCTCCAACAACCC
26111319 CCTCCAACAACCC
1 CCTCCAACAACCC
26111332 ATTCAAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.62, G:0.00, T:0.08
Consensus pattern (13 bp):
CCTCCAACAACCC
Found at i:26126789 original size:40 final size:41
Alignment explanation
Indices: 26126730--26127121 Score: 505
Period size: 40 Copynumber: 9.8 Consensus size: 41
26126720 CATTTGAATG
* * *
26126730 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
26126770 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
26126810 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
26126850 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
26126890 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-GT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
26126930 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * * *
26126970 ATACCCGGGTTAAGACCCGAAGGTAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
26127010 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGTGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
26127050 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
26127090 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
26127122 TTGTGGTTAT
Statistics
Matches: 307, Mismatches: 38, Indels: 14
0.86 0.11 0.04
Matches are distributed among these distances:
39 4 0.01
40 295 0.96
41 8 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:26126947 original size:120 final size:120
Alignment explanation
Indices: 26126734--26127141 Score: 710
Period size: 120 Copynumber: 3.4 Consensus size: 120
26126724 TGAATGATAT
* * * *
26126734 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
26126799 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
26126854 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
26126919 TGCGAGTTGGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
*
26126974 CCGGGTTAAGACCCGAAGGTAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
* *
26127039 TACGTGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* * *
26127094 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
26127142 ATTCCGAAGA
Statistics
Matches: 275, Mismatches: 13, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
119 6 0.02
120 269 0.98
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:26136083 original size:4 final size:4
Alignment explanation
Indices: 26136074--26136126 Score: 97
Period size: 4 Copynumber: 13.2 Consensus size: 4
26136064 TTACTACTAA
*
26136074 TATG TATG TATG TATG TATG TGTG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
26136122 TATG T
1 TATG T
26136127 TTTCTTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:26145948 original size:20 final size:20
Alignment explanation
Indices: 26145904--26145945 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
26145894 AGCACATGTA
26145904 TTCATAAAATTTCAGAATTT
1 TTCATAAAATTTCAGAATTT
26145924 TTCATCAAAATTTACA-AATTT
1 TTCAT-AAAATTT-CAGAATTT
26145945 T
1 T
26145946 CATTTTAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (20 bp):
TTCATAAAATTTCAGAATTT
Found at i:26153103 original size:11 final size:11
Alignment explanation
Indices: 26153089--26153159 Score: 63
Period size: 11 Copynumber: 6.5 Consensus size: 11
26153079 GGTGCAAGGA
26153089 TGGTGATATGG
1 TGGTGATATGG
*
26153100 TGGTGCTATGG
1 TGGTGATATGG
* * *
26153111 TGATGGTGTGG
1 TGGTGATATGG
*
26153122 TGGTGCTATGG
1 TGGTGATATGG
*
26153133 TGGTTG-TATTG
1 TGG-TGATATGG
*
26153144 TGGTGATATAG
1 TGGTGATATGG
26153155 TGGTG
1 TGGTG
26153160 TTTTGGTTGT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
10 2 0.04
11 45 0.92
12 2 0.04
ACGTcount: A:0.13, C:0.03, G:0.45, T:0.39
Consensus pattern (11 bp):
TGGTGATATGG
Found at i:26153146 original size:22 final size:22
Alignment explanation
Indices: 26153076--26153159 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 22
26153066 TGGTTTTGGA
* *
26153076 GGTGGTGC-AAGGATGGTGATAT
1 GGTGGTGCTATGG-TGGTGGTAT
* *
26153098 GGTGGTGCTATGGTGATGGTGT
1 GGTGGTGCTATGGTGGTGGTAT
*
26153120 GGTGGTGCTATGGTGGTTGTAT
1 GGTGGTGCTATGGTGGTGGTAT
* * *
26153142 TGTGGTGATATAGTGGTG
1 GGTGGTGCTATGGTGGTG
26153160 TTTTGGTTGT
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
22 47 0.94
23 3 0.06
ACGTcount: A:0.14, C:0.04, G:0.46, T:0.36
Consensus pattern (22 bp):
GGTGGTGCTATGGTGGTGGTAT
Found at i:26158565 original size:27 final size:27
Alignment explanation
Indices: 26158535--26158690 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
26158525 TGCTATTCAC
* *
26158535 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
26158562 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
26158589 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
26158617 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
26158644 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
26158671 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
26158691 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:26158606 original size:55 final size:55
Alignment explanation
Indices: 26158540--26158691 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
26158530 TTCACTCAAC
* *
26158540 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
26158595 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
26158649 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
26158692 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:26166623 original size:27 final size:27
Alignment explanation
Indices: 26166593--26166748 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
26166583 TGCTATTCAC
* *
26166593 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
26166620 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
26166647 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
26166675 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
26166702 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
26166729 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
26166749 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:26166664 original size:55 final size:55
Alignment explanation
Indices: 26166598--26166749 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
26166588 TTCACTCAAC
* *
26166598 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
26166653 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
26166707 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
26166750 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:26169093 original size:31 final size:31
Alignment explanation
Indices: 26169056--26169165 Score: 103
Period size: 31 Copynumber: 3.4 Consensus size: 31
26169046 AATCAAAATG
26169056 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* * *
26169087 AGAATCAGAATCAGAATTAGAATTAGGTGACAAAATT
1 AGAATCAGAATC------AGAATCAGGTGACAGAATC
* * *
26169124 AGAATTAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
26169155 AAAATCAGAAT
1 AGAATCAGAAT
26169166 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
31 35 0.56
37 27 0.44
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:26169129 original size:6 final size:6
Alignment explanation
Indices: 26169035--26169109 Score: 73
Period size: 6 Copynumber: 12.3 Consensus size: 6
26169025 AAGAAACATT
* * *
26169035 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
26169084 ATCAGA ATCAGA ATCAGA ATTAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
26169110 TAGGTGACAA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
5 2 0.04
6 50 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:26169158 original size:37 final size:36
Alignment explanation
Indices: 26169044--26169165 Score: 128
Period size: 37 Copynumber: 3.5 Consensus size: 36
26169034 TATCAGAACT
*
26169044 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGT-AC
* * *
26169081 AGAATCAGAATCAGAATCAGAATTAGAATTAGGT--
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAC
* * *
26169115 -G-A-CAAAATTAGAATTAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGT-AC
26169149 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
26169166 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
31 23 0.34
32 1 0.01
33 1 0.01
35 1 0.01
36 1 0.01
37 41 0.60
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.20
Consensus pattern (36 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAC
Found at i:26169331 original size:27 final size:26
Alignment explanation
Indices: 26169286--26169342 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
26169276 AGGCTACCAA
* *
26169286 ATATTGTGACTAAGTCACCAGATATAG
1 ATATTGTGACTAAGCCACCAGA-ACAG
* *
26169313 ATATTGTGGCTAGGCCACCAGAACAG
1 ATATTGTGACTAAGCCACCAGAACAG
26169339 ATAT
1 ATAT
26169343 ATATATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (26 bp):
ATATTGTGACTAAGCCACCAGAACAG
Found at i:26169702 original size:27 final size:27
Alignment explanation
Indices: 26169672--26169780 Score: 155
Period size: 27 Copynumber: 4.0 Consensus size: 27
26169662 AACACCCTAG
*
26169672 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACAATAATTCTGTAAATCGA
***
26169699 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAATAATTCTGTAAATCGA
*
26169726 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAATAATTCTGTAAATCGA
* *
26169753 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACAATAATTCTGTAAATCGA
26169780 G
1 G
26169781 AGTACTTTGG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GGGTAAAACAATAATTCTGTAAATCGA
Found at i:26169754 original size:54 final size:54
Alignment explanation
Indices: 26169672--26169780 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
26169662 AACACCCTAG
* * * *
26169672 GGGTAAAACAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGA
*
26169726 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGA
26169780 G
1 G
26169781 AGTACTTTGG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGA
Found at i:26171573 original size:27 final size:27
Alignment explanation
Indices: 26171543--26171628 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
26171533 AGGATACCAA
26171543 GTAAGACCATGCCAAGGCATGACATTG
1 GTAAGACCATGCCAAGGCATGACATTG
** * * * *
26171570 GTAAGTTC-T-ACAAGGCAAGGAAATTAT
1 GTAAGACCATGCCAAGGC-ATGACATT-G
*
26171597 GTAAGACCATGCCAATGCATGACATTG
1 GTAAGACCATGCCAAGGCATGACATTG
26171624 GTAAG
1 GTAAG
26171629 TTCTACAAGG
Statistics
Matches: 42, Mismatches: 13, Indels: 8
0.67 0.21 0.13
Matches are distributed among these distances:
25 6 0.14
26 7 0.17
27 17 0.40
28 7 0.17
29 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (27 bp):
GTAAGACCATGCCAAGGCATGACATTG
Found at i:26171584 original size:25 final size:25
Alignment explanation
Indices: 26171555--26171640 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
26171545 AAGACCATGC
26171555 CAAGGCATGACATTGGTAAGTTCTA
1 CAAGGCATGACATTGGTAAGTTCTA
* * * ** *
26171580 CAAGGCAAGGAAATTATGTAAGACCATGC
1 CAAGGC-ATGACATT-GGTAAGTTC-T-A
*
26171609 CAATGCATGACATTGGTAAGTTCTA
1 CAAGGCATGACATTGGTAAGTTCTA
26171634 CAAGGCA
1 CAAGGCA
26171641 AGGAAATTAT
Statistics
Matches: 43, Mismatches: 14, Indels: 8
0.66 0.22 0.12
Matches are distributed among these distances:
25 12 0.28
26 7 0.16
27 12 0.28
28 7 0.16
29 5 0.12
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (25 bp):
CAAGGCATGACATTGGTAAGTTCTA
Found at i:26171617 original size:54 final size:54
Alignment explanation
Indices: 26171543--26171677 Score: 234
Period size: 54 Copynumber: 2.5 Consensus size: 54
26171533 AGGATACCAA
26171543 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAAGGAAATTAT
1 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAAGGAAATTAT
*
26171597 GTAAGACCATGCCAATGCATGACATTGGTAAGTTCTACAAGGCAAGGAAATTAT
1 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAAGGAAATTAT
* * *
26171651 GTAAGACCATGTCAAGACATGGCATTG
1 GTAAGACCATGCCAAGGCATGACATTG
26171678 ATAAACTACT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
GTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAAGGAAATTAT
Found at i:26171654 original size:27 final size:27
Alignment explanation
Indices: 26171570--26171655 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
26171560 CATGACATTG
26171570 GTAAGTTCTACAAGGCAAGGAAATTAT
1 GTAAGTTCTACAAGGCAAGGAAATTAT
** * * * * *
26171597 GTAAGACCATGCCAATGC-ATGACATT-G
1 GTAAGTTC-T-ACAAGGCAAGGAAATTAT
26171624 GTAAGTTCTACAAGGCAAGGAAATTAT
1 GTAAGTTCTACAAGGCAAGGAAATTAT
26171651 GTAAG
1 GTAAG
26171656 ACCATGTCAA
Statistics
Matches: 41, Mismatches: 14, Indels: 8
0.65 0.22 0.13
Matches are distributed among these distances:
25 5 0.12
26 7 0.17
27 17 0.41
28 7 0.17
29 5 0.12
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (27 bp):
GTAAGTTCTACAAGGCAAGGAAATTAT
Found at i:26174301 original size:29 final size:29
Alignment explanation
Indices: 26174099--26174418 Score: 189
Period size: 29 Copynumber: 11.3 Consensus size: 29
26174089 AGATTACACT
* * * **
26174099 ACAAAGGCGTCCTTTTAACAAAGTTTTCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCC
* *
26174128 AC-AAGACATTCC-TTTAATAGAGAT-GACC
1 ACAAAGGCA-TCCTTTTAACAGAGATAG-CC
26174156 AC-AAGGACATCCTTTTAACAGAGATAGCC
1 ACAAAGG-CATCCTTTTAACAGAGATAGCC
* * *
26174185 ACAAAGACATCCTTTTAATAGAGATAACC
1 ACAAAGGCATCCTTTTAACAGAGATAGCC
* * **
26174214 ATAAAGACATCCTTTTAATTGAGATAGCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCC
* *
26174243 ACAAAGGCATTCATTTAACA-ATGATAGCC
1 ACAAAGGCATCCTTTTAACAGA-GATAGCC
* *
26174272 ACAAAGGCATCATTTTAACAGAGATTGCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCC
* * * * ** *
26174301 ACATAGGCGTTCATTTAATTGAGACAGCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCC
* * *
26174330 ACAAAGGCTTCCTTATAATAGAGATCA-CC
1 ACAAAGGCATCCTTTTAACAGAGAT-AGCC
* * * *
26174359 ATAAAGACTTCC-ATT--CAGAGATAGCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCC
* *
26174385 ACAAA-G-ATGTCTATT--CAGAGATAGCC
1 ACAAAGGCAT-CCTTTTAACAGAGATAGCC
26174411 ACAAAGGC
1 ACAAAGGC
26174419 TCACTTATAC
Statistics
Matches: 228, Mismatches: 49, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
24 1 0.00
25 2 0.01
26 31 0.14
27 1 0.00
28 25 0.11
29 162 0.71
30 6 0.03
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (29 bp):
ACAAAGGCATCCTTTTAACAGAGATAGCC
Found at i:26174314 original size:58 final size:58
Alignment explanation
Indices: 26174099--26174354 Score: 212
Period size: 58 Copynumber: 4.4 Consensus size: 58
26174089 AGATTACACT
* * * ** * * * *
26174099 ACAAAGGCGTCCTTTTAACAAAGTTTTCCAC-AAGACATTCCTTTAATAGAGATGACC
1 ACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCATTCATTTAACAGAGATAACC
* * * *
26174156 AC-AAGGACATCCTTTTAACAGAGATAGCCACAAAGACATCCTTTTAATAGAGATAACC
1 ACAAAGG-CATCCTTTTAACAGAGATAGCCACAAAGGCATTCATTTAACAGAGATAACC
* * ** *
26174214 ATAAAGACATCCTTTTAATTGAGATAGCCACAAAGGCATTCATTTAACA-ATGATAGCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCATTCATTTAACAGA-GATAACC
* * * * ** * *
26174272 ACAAAGGCATCATTTTAACAGAGATTGCCACATAGGCGTTCATTTAATTGAGACAGCC
1 ACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCATTCATTTAACAGAGATAACC
* * *
26174330 ACAAAGGCTTCCTTATAATAGAGAT
1 ACAAAGGCATCCTTTTAACAGAGAT
26174355 CACCATAAAG
Statistics
Matches: 162, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.02
57 22 0.14
58 132 0.81
59 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (58 bp):
ACAAAGGCATCCTTTTAACAGAGATAGCCACAAAGGCATTCATTTAACAGAGATAACC
Found at i:26174318 original size:87 final size:86
Alignment explanation
Indices: 26174099--26174354 Score: 241
Period size: 87 Copynumber: 3.0 Consensus size: 86
26174089 AGATTACACT
* * * * * *
26174099 ACAAAGGCGTCCTTTTAACAAAGTTTTCCACAAGACATTCCTTTAATAGAGAT-GACCAC-AAGG
1 ACAAAGGCATCCTTTTAACAGAGATTACCACAAGACATTCATTTAATTGAGATAG-CCACAAAGG
*
26174162 ACATCCTTTTAACAGAGATAGCC
65 -CATCCATTTAACAGAGATAGCC
* * * * * *
26174185 ACAAAGACATCCTTTTAATAGAGATAACCATAAAGACATCCTTTTAATTGAGATAGCCACAAAGG
1 ACAAAGGCATCCTTTTAACAGAGATTACCA-CAAGACATTCATTTAATTGAGATAGCCACAAAGG
*
26174250 CATTCATTTAACA-ATGATAGCC
65 CATCCATTTAACAGA-GATAGCC
* * * * *
26174272 ACAAAGGCATCATTTTAACAGAGATTGCCACATAGGCGTTCATTTAATTGAGACAGCCACAAAGG
1 ACAAAGGCATCCTTTTAACAGAGATTACCACA-AGACATTCATTTAATTGAGATAGCCACAAAGG
* *
26174337 CTTCC-TTATAATAGAGAT
65 CATCCATT-TAACAGAGAT
26174355 CACCATAAAG
Statistics
Matches: 136, Mismatches: 27, Indels: 13
0.77 0.15 0.07
Matches are distributed among these distances:
86 27 0.20
87 103 0.76
88 6 0.04
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (86 bp):
ACAAAGGCATCCTTTTAACAGAGATTACCACAAGACATTCATTTAATTGAGATAGCCACAAAGGC
ATCCATTTAACAGAGATAGCC
Found at i:26174856 original size:12 final size:12
Alignment explanation
Indices: 26174841--26174870 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26174831 GTGAATAACG
26174841 AATAAATGAACA
1 AATAAATGAACA
26174853 AATAAATGAACA
1 AATAAATGAACA
26174865 AATAAA
1 AATAAA
26174871 AAACTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (12 bp):
AATAAATGAACA
Found at i:26177731 original size:64 final size:64
Alignment explanation
Indices: 26177571--26177732 Score: 225
Period size: 64 Copynumber: 2.5 Consensus size: 64
26177561 ATAGCTATAT
* * ** *
26177571 CCTGGACACATGCCGGTGTCCTTGGCCCATATGATTGTTATCTTGTAATCAGTGAGATACACGG
1 CCTGGACACATGCCCGTGTCCTTGGCCCATGTGATCCTTATCTTATAATCAGTGAGATACACGG
* * * * *
26177635 CCTGGACACACGCCCTTATCCTTGGCCCATGTGATCCTTATCTTATAATCAGTGAGTTACTCGG
1 CCTGGACACATGCCCGTGTCCTTGGCCCATGTGATCCTTATCTTATAATCAGTGAGATACACGG
*
26177699 CCTGGACACATGCCCGTGTCCTTGGCCTATGTGA
1 CCTGGACACATGCCCGTGTCCTTGGCCCATGTGA
26177733 ACCCCGCATT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 84 1.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.30
Consensus pattern (64 bp):
CCTGGACACATGCCCGTGTCCTTGGCCCATGTGATCCTTATCTTATAATCAGTGAGATACACGG
Found at i:26178357 original size:32 final size:31
Alignment explanation
Indices: 26178321--26178396 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 31
26178311 CAACGAAAAG
* *
26178321 AAAAGAAAGGAAGAGAAGAAGAA-TAAAAATGA
1 AAAAGAAAGGAAGA-AA-AAGAACGAAAAAGGA
*
26178353 AAAAGAAAAGAAGAAAAAGAACGAAAAAGGA
1 AAAAGAAAGGAAGAAAAAGAACGAAAAAGGA
*
26178384 AAAGAGACAGGAA
1 AAA-AGAAAGGAA
26178397 ATAATACGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 5 0.14
31 12 0.32
32 20 0.54
ACGTcount: A:0.70, C:0.03, G:0.25, T:0.03
Consensus pattern (31 bp):
AAAAGAAAGGAAGAAAAAGAACGAAAAAGGA
Done.