Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 85 of 253
Found at i:26178358 original size:24 final size:24
Alignment explanation
Indices: 26178331--26178388 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
26178321 AAAAGAAAGG
*
26178331 AAGAGAAGAAGAATAAA-AATGAAA
1 AAGAGAAGAAGAA-AAAGAACGAAA
*
26178355 AAGAAAAGAAGAAAAAGAACGAAA
1 AAGAGAAGAAGAAAAAGAACGAAA
26178379 AAG-GAA-AAGA
1 AAGAGAAGAAGA
26178389 GACAGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 4 0.13
23 5 0.17
24 21 0.70
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.03
Consensus pattern (24 bp):
AAGAGAAGAAGAAAAAGAACGAAA
Found at i:26178387 original size:30 final size:32
Alignment explanation
Indices: 26178312--26178388 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 32
26178302 CTAAGCCCGC
*
26178312 AACG-AAAA-GAAAAGAAAGGAAGAGAAGAAG
1 AACGAAAAAGGAAAAGAAAAGAAGAGAAGAAG
* *
26178342 AA-TAAAAATGAAAAAGAAAAGAAGA-AA-AAG
1 AACGAAAAA-GGAAAAGAAAAGAAGAGAAGAAG
26178372 AACGAAAAAGGAAAAGA
1 AACGAAAAAGGAAAAGA
26178389 GACAGGAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
30 18 0.47
31 7 0.18
32 13 0.34
ACGTcount: A:0.71, C:0.03, G:0.23, T:0.03
Consensus pattern (32 bp):
AACGAAAAAGGAAAAGAAAAGAAGAGAAGAAG
Found at i:26180672 original size:40 final size:40
Alignment explanation
Indices: 26180617--26180794 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
26180607 CGGATGATAA
*
26180617 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26180657 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
26180697 TCGGGCTAAGTCCCGAAAGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26180737 CCGGGCTAAGTCCCGAAGGAATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26180777 CC-GACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26180795 TACTTGGTTG
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 16 0.13
40 106 0.87
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26185563 original size:53 final size:53
Alignment explanation
Indices: 26185504--26185616 Score: 217
Period size: 53 Copynumber: 2.1 Consensus size: 53
26185494 AGCGTTTTAT
26185504 TAAAAACACCGTAAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCAC
1 TAAAAACACCGTAAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCAC
*
26185557 TAAAAACGCCGTAAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCAC
1 TAAAAACACCGTAAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCAC
26185610 TAAAAAC
1 TAAAAAC
26185617 TAAGCAATAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.19
Consensus pattern (53 bp):
TAAAAACACCGTAAAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCAC
Found at i:26185617 original size:41 final size:41
Alignment explanation
Indices: 26185570--26185679 Score: 141
Period size: 41 Copynumber: 2.7 Consensus size: 41
26185560 AAACGCCGTA
26185570 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* * * * *
26185611 AAAAACTAAGCAATAGCGGGGTCTTTGGTCCAAATGCCGCT
1 AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
* *
26185652 AAAAA-TGGAGCAATAGCGACGCTTTTGG
1 AAAAACT-GAGCAATAGCGGCGTTTTTGG
26185680 AAAAACGCTG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 1 0.02
41 57 0.98
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCGGCGTTTTTGGTCCAAACGCCACT
Found at i:26185710 original size:41 final size:40
Alignment explanation
Indices: 26185665--26185896 Score: 261
Period size: 41 Copynumber: 5.7 Consensus size: 40
26185655 AATGGAGCAA
* * *
26185665 TAGCGACGCTTTTGGAAAAACGCTGTTATTGCTCAGTTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATTGCTCAG-TTTT
* * *
26185706 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATTGCTC-AGTTTT
* * * * *
26185747 TAGCGGCGCTTTTGGAAAAACACCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATTGCTC-AGTTTT
** * * *
26185788 TAGCGGCAATTTTGGGAAAATGCCACTATTGCTCAGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATTGCTCAGTTTT
26185828 TAG-GGCG-TTTCTGGAAAAACGCCGCTATTGCTCAGTTTTT
1 TAGCGGCGCTTT-TGGAAAAACGCCGCTATTGCTCAG-TTTT
26185868 TAGCGGCGCTTTTGGAAAAACGCCGCTAT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTAT
26185897 AGATTGAGGT
Statistics
Matches: 166, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 3 0.02
39 24 0.14
40 15 0.09
41 119 0.72
42 5 0.03
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (40 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATTGCTCAGTTTT
Found at i:26186683 original size:21 final size:21
Alignment explanation
Indices: 26186653--26186692 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26186643 ATATATGTTC
26186653 ATGGTCTAGGATTTAGGATAT
1 ATGGTCTAGGATTTAGGATAT
* *
26186674 ATGGTTTAGGATTTGGGAT
1 ATGGTCTAGGATTTAGGAT
26186693 TTAATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.03, G:0.33, T:0.40
Consensus pattern (21 bp):
ATGGTCTAGGATTTAGGATAT
Found at i:26187080 original size:7 final size:7
Alignment explanation
Indices: 26187067--26187130 Score: 74
Period size: 8 Copynumber: 8.6 Consensus size: 7
26187057 AAATCTTCAA
26187067 AAAAATT
1 AAAAATT
*
26187074 GAAAATTT
1 -AAAAATT
26187082 AAAAATT
1 AAAAATT
26187089 AAAAATT
1 AAAAATT
*
26187096 AAAACTT
1 AAAAATT
26187103 AAAAACTT
1 AAAAA-TT
26187111 AAAAACTT
1 AAAAA-TT
26187119 AAAAACTT
1 AAAAA-TT
26187127 AAAA
1 AAAA
26187131 TTTTAATATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
7 23 0.45
8 28 0.55
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:26187086 original size:8 final size:8
Alignment explanation
Indices: 26187041--26187136 Score: 63
Period size: 8 Copynumber: 11.9 Consensus size: 8
26187031 CTTATATGTT
26187041 AATTTAAA
1 AATTTAAA
*
26187049 AATGATAAA
1 AAT-TTAAA
26187058 AATCTTCAAAA
1 AAT-TT--AAA
* *
26187069 AAATTGAA
1 AATTTAAA
26187077 AATTTAAA
1 AATTTAAA
26187085 AA-TTAAA
1 AATTTAAA
26187092 AA-TT-AA
1 AATTTAAA
*
26187098 AACTTAAA
1 AATTTAAA
*
26187106 AACTTAAA
1 AATTTAAA
*
26187114 AACTTAAA
1 AATTTAAA
*
26187122 AACTTAAA
1 AATTTAAA
*
26187130 ATTTTAA
1 AATTTAA
26187137 TATTTAATAT
Statistics
Matches: 74, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
6 4 0.05
7 11 0.15
8 44 0.59
9 8 0.11
10 2 0.03
11 5 0.07
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.30
Consensus pattern (8 bp):
AATTTAAA
Found at i:26187087 original size:15 final size:15
Alignment explanation
Indices: 26187067--26187130 Score: 85
Period size: 15 Copynumber: 4.3 Consensus size: 15
26187057 AAATCTTCAA
* *
26187067 AAAAATTGAAAATTT
1 AAAAATTAAAAACTT
26187082 AAAAATTAAAAA-TT
1 AAAAATTAAAAACTT
*
26187096 AAAACTTAAAAACTT
1 AAAAATTAAAAACTT
26187111 AAAAACTTAAAAACTT
1 AAAAA-TTAAAAACTT
26187127 AAAA
1 AAAA
26187131 TTTTAATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
14 13 0.30
15 17 0.39
16 14 0.32
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.27
Consensus pattern (15 bp):
AAAAATTAAAAACTT
Found at i:26187117 original size:16 final size:16
Alignment explanation
Indices: 26187075--26187130 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
26187065 AAAAAAATTG
*
26187075 AAAATTTAAAAA-TTA
1 AAAACTTAAAAACTTA
26187090 AAAA-TT-AAAACTTA
1 AAAACTTAAAAACTTA
26187104 AAAACTTAAAAACTTA
1 AAAACTTAAAAACTTA
26187120 AAAACTTAAAA
1 AAAACTTAAAA
26187131 TTTTAATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.11
14 9 0.24
15 6 0.16
16 19 0.50
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAACTTAAAAACTTA
Found at i:26198841 original size:16 final size:16
Alignment explanation
Indices: 26198789--26198833 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
26198779 AGTAGATCAG
26198789 AAAAAGCCAAAATACC
1 AAAAAGCCAAAATACC
*
26198805 AAAAAGTCAAAATACC
1 AAAAAGCCAAAATACC
*
26198821 GAAAAGCCAAAAT
1 AAAAAGCCAAAAT
26198834 GTCAAAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.62, C:0.20, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAAGCCAAAATACC
Found at i:26199123 original size:28 final size:28
Alignment explanation
Indices: 26199054--26199167 Score: 110
Period size: 28 Copynumber: 4.1 Consensus size: 28
26199044 AGCATGATTG
* *
26199054 TAAATGTGATTAGGGCCTAA-GAGCCATA
1 TAAATGTGATT-GGGCCTAATGGGCCACA
*
26199082 TGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGA-TTGGGCCTAATGGGCCACA
*
26199111 TAAATGTGATTGGACC-AATGGGCCA-A
1 TAAATGTGATTGGGCCTAATGGGCCACA
* *
26199137 TTGAAA-GAGATTGGGCCTAGTGGGCCACA
1 -T-AAATGTGATTGGGCCTAATGGGCCACA
26199166 TA
1 TA
26199168 CAGGTATGTG
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 20 0.28
28 34 0.47
29 17 0.24
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCACA
Found at i:26211603 original size:93 final size:93
Alignment explanation
Indices: 26211450--26211621 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
26211440 AGGATATTTG
** * * *
26211450 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTTTCTTATGGATGTGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
26211515 TTGAGTCCAAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * *
26211543 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
*
26211608 TTGAGTCCGAGTTC
66 TTGAGTCCAAGTTC
26211622 ACTTATAGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:26211615 original size:46 final size:46
Alignment explanation
Indices: 26211455--26211627 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
26211445 ATTTGGGCAT
** * * *
26211455 CCGAACTCGTTGAGTTGAGTCCGAGTTTTCTTATGGATGTGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *** * * * *
26211501 CCAAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
26211546 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
26211594 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
26211628 AGGCGGGTTA
Statistics
Matches: 99, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 64 0.65
47 30 0.30
48 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:26212984 original size:19 final size:19
Alignment explanation
Indices: 26212960--26212997 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26212950 AAATGTGCCA
26212960 CATAAATGTGATTGGGCCT
1 CATAAATGTGATTGGGCCT
26212979 CATAAATGTGATTGGGCCT
1 CATAAATGTGATTGGGCCT
26212998 AATGGGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (19 bp):
CATAAATGTGATTGGGCCT
Found at i:26213020 original size:47 final size:48
Alignment explanation
Indices: 26212935--26213025 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
26212925 CGTTACAATG
* *
26212935 AATGTGATTTGGGCCAAATGTGCCACATAAATGTGATTGGGCCTCATA
1 AATGTGATTTGGGCCAAATGGGCCACATAAATGAGATTGGGCCTCATA
* *
26212983 AATGTGA-TTGGGCCTAATGGGCCATATGAAA-GAGATTGGGCCT
1 AATGTGATTTGGGCCAAATGGGCCACAT-AAATGAGATTGGGCCT
26213026 AGTGGGCCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
47 28 0.74
48 10 0.26
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (48 bp):
AATGTGATTTGGGCCAAATGGGCCACATAAATGAGATTGGGCCTCATA
Found at i:26215659 original size:21 final size:20
Alignment explanation
Indices: 26215611--26215660 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
26215601 AGCCCACAAC
*
26215611 GAAAAGAAAAGAAAGGAAGA
1 GAAAAGAAAAGAAAGGAAAA
26215631 GAAGAAGAATAA-AAAGGAAAAA
1 GAA-AAGAA-AAGAAAGG-AAAA
26215653 GAAAAGAA
1 GAAAAGAA
26215661 GAACAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 8 0.31
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (20 bp):
GAAAAGAAAAGAAAGGAAAA
Found at i:26215677 original size:27 final size:28
Alignment explanation
Indices: 26215630--26215687 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
26215620 AGAAAGGAAG
* *
26215630 AGAAGAAGAATAAAAAGGAAAAA-GAAA
1 AGAAGAACAATAAAAAAGAAAAATGAAA
26215657 AGAAGAACAA-AAATAAAGAAAAATGAAA
1 AGAAGAACAATAAA-AAAGAAAAATGAAA
26215685 AGA
1 AGA
26215688 GATAGGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 3 0.11
27 17 0.63
28 7 0.26
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.05
Consensus pattern (28 bp):
AGAAGAACAATAAAAAAGAAAAATGAAA
Found at i:26218638 original size:19 final size:19
Alignment explanation
Indices: 26218585--26218638 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
26218575 TACAATTTAG
26218585 AAATAAGAATAGTTTAATA
1 AAATAAGAATAGTTTAATA
26218604 AAAT-AG--TA----AA-A
1 AAATAAGAATAGTTTAATA
26218615 AAATAAGAATAGTTTAATA
1 AAATAAGAATAGTTTAATA
26218634 AAATA
1 AAATA
26218639 TTAAGCTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 16
0.63 0.00 0.37
Matches are distributed among these distances:
11 5 0.19
12 4 0.15
14 2 0.07
16 2 0.07
18 4 0.15
19 10 0.37
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (19 bp):
AAATAAGAATAGTTTAATA
Found at i:26221862 original size:4 final size:4
Alignment explanation
Indices: 26221853--26221897 Score: 56
Period size: 4 Copynumber: 10.8 Consensus size: 4
26221843 ATTCTGATAT
26221853 TTTA TTTA -TTA TTCTA TTTTA TTTA TCTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TT-TA -TTTA TTTA T-TTA TTTA TTTA TTTA TTT
26221898 TGACTTGGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 3 0.08
4 24 0.65
5 8 0.22
6 2 0.05
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:26221863 original size:20 final size:17
Alignment explanation
Indices: 26221850--26221896 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
26221840 ATTATTCTGA
26221850 TATTTTATTTATTATTC
1 TATTTTATTTATTATTC
26221867 TATTTTATTTATCTTATT-
1 TATTTTATTTA--TTATTC
26221885 TA-TTTATTTATT
1 TATTTTATTTATT
26221897 TTGACTTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 2 0.07
17 19 0.68
18 2 0.07
19 5 0.18
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTTATTTATTATTC
Found at i:26221886 original size:13 final size:12
Alignment explanation
Indices: 26221853--26221897 Score: 56
Period size: 13 Copynumber: 3.6 Consensus size: 12
26221843 ATTCTGATAT
26221853 TTTATTTA-TTA
1 TTTATTTATTTA
26221864 TTCTATTTTATTTA
1 TT-TA-TTTATTTA
26221878 TCTTATTTATTTA
1 T-TTATTTATTTA
26221891 TTTATTT
1 TTTATTT
26221898 TGACTTGGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.07
12 8 0.27
13 13 0.43
14 6 0.20
15 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATTTATTTA
Found at i:26232139 original size:31 final size:31
Alignment explanation
Indices: 26232104--26232176 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
26232094 ATACTGGGCC
26232104 GAAGCCTTTACATTATTCATACCACTAGGCA
1 GAAGCCTTTACATTATTCATACCACTAGGCA
* * * *
26232135 GAAGCCTTTTCATTATTCATATCACTGGGCC
1 GAAGCCTTTACATTATTCATACCACTAGGCA
26232166 GAAGCCTTTAC
1 GAAGCCTTTAC
26232177 TATAAACGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (31 bp):
GAAGCCTTTACATTATTCATACCACTAGGCA
Found at i:26232424 original size:25 final size:25
Alignment explanation
Indices: 26232396--26232464 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
26232386 CTCTTTTAAT
*
26232396 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * *
26232421 AACTAGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
26232446 AACTGGGGCATAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
26232465 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:26235165 original size:20 final size:21
Alignment explanation
Indices: 26235133--26235171 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
26235123 ATGCACCATC
26235133 ATTTTATAAATTTA-ACATGA
1 ATTTTATAAATTTATACATGA
26235153 ATTTT-TAATATTTATACAT
1 ATTTTATAA-ATTTATACAT
26235172 ATTAATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 10 0.59
21 4 0.24
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (21 bp):
ATTTTATAAATTTATACATGA
Found at i:26236343 original size:18 final size:18
Alignment explanation
Indices: 26236320--26236363 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
26236310 TGGCACAATA
26236320 CAGTAACAATACAT-AGTG
1 CAGTAACAATA-ATCAGTG
26236338 CAGTAACAATAATCAGTG
1 CAGTAACAATAATCAGTG
26236356 CAGTAACA
1 CAGTAACA
26236364 GAATACATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 2 0.08
18 23 0.92
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.20
Consensus pattern (18 bp):
CAGTAACAATAATCAGTG
Found at i:26236891 original size:27 final size:27
Alignment explanation
Indices: 26236677--26236890 Score: 243
Period size: 27 Copynumber: 8.0 Consensus size: 27
26236667 ATATATACAT
* * *
26236677 CACAT-AGGGCAAAATAGTCATATTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
26236703 CATATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * * *
26236730 CACATAAGGGAAAAACATTTATCTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
26236757 CACCTAATGG-AAAAGCAGTCATTTTAC
1 CACATAAGGGCAAAA-CAATCATTTTAC
* ** *
26236784 TACATAACAGCAAAACAATCATTTTAT
1 CACATAAGGGCAAAACAATCATTTTAC
*
26236811 CACATAAGGGAAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
26236838 CACATAAGGGCAAAACAATCATTTTAT
1 CACATAAGGGCAAAACAATCATTTTAC
*
26236865 CACATAAGGGCAAAACATTCATTTTA
1 CACATAAGGGCAAAACAATCATTTTA
26236891 TTAATTTAGG
Statistics
Matches: 157, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
26 8 0.05
27 145 0.92
28 4 0.03
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAC
Found at i:26244072 original size:49 final size:48
Alignment explanation
Indices: 26244009--26244178 Score: 168
Period size: 49 Copynumber: 3.5 Consensus size: 48
26243999 AAGTCGATGC
*
26244009 CATGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAGGCTAATG
1 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCTAATG
* * * *
26244057 ACGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC-AGTG-TCAATG
1 -CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCT-AATG
* * *
26244106 CCATGTCCCAGACAAGTCTTACACT-AGCTTGT-ATATCTCGAGGCTGATG
1 -CATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAGGCTAATG
* *
26244155 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
26244179 AGCTCTCGTC
Statistics
Matches: 100, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
48 25 0.25
49 71 0.71
50 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCTAATG
Found at i:26244147 original size:98 final size:95
Alignment explanation
Indices: 26243961--26244270 Score: 265
Period size: 98 Copynumber: 3.3 Consensus size: 95
26243951 ATGCCGACAC
* ** * *
26243961 CATGTCACAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCAAACAGGTC
1 CATGTCCCAGACA-GGTCTTACACTGGCTCTCACATCAAAGTCAATGCCATGTCCCAAACAAGTC
26244026 TTACACTGACTTTCATATATCGAGGCTAATG
65 TTACACTGACTTTCATATATCGAGGCTAATG
* ** *
26244057 ACGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCAATGCCATGTCCCAGACAAG
1 -CATGTCCCAGACAGGTCTTACACTGGCTCTCA-C-ATCAAAGTCAATGCCATGTCCCAAACAAG
* *
26244122 TCTTACACT-AGCTTGT-ATATCTCGAGGCTGATG
63 TCTTACACTGA-CTT-TCATATATCGAGGCTAATG
* * * * * * * * *
26244155 CATGTCCTAGACATGTCTTACACTAGCTCTCGTC-TCAATGCCGATG-CATG-CCCTAGACATGT
1 CATGTCCCAGACAGGTCTTACACTGGCTCTC-ACATCAAAGTCAATGCCATGTCCC-AAACAAGT
* * * **
26244217 CTTACACTGGCTCTCATA-AT-GTGGCCGATG
64 CTTACACTGACTTTCATATATCGAGGCTAATG
*
26244247 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
26244271 AGCACACATA
Statistics
Matches: 179, Mismatches: 26, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
92 31 0.17
93 5 0.03
94 24 0.13
95 9 0.05
96 17 0.09
97 41 0.23
98 51 0.28
99 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (95 bp):
CATGTCCCAGACAGGTCTTACACTGGCTCTCACATCAAAGTCAATGCCATGTCCCAAACAAGTCT
TACACTGACTTTCATATATCGAGGCTAATG
Found at i:26244215 original size:46 final size:45
Alignment explanation
Indices: 26244151--26244273 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 45
26244141 TCTCGAGGCT
* *
26244151 GATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAA-T-GCC
1 GATGCATGCCCTAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCC
*
26244197 GATGCATGCCCTAGACATGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCATGCCCTAGACATGTCTTACACTAGCTCTCATAA-GTGGCC
26244243 GATGCATGTCCC-AGACATGTCTTACACTAGC
1 GATGCATG-CCCTAGACATGTCTTACACTAGC
26244274 ACACATATCA
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 62 0.90
47 3 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGCCCTAGACATGTCTTACACTAGCTCTCATAAGTGGCC
Found at i:26251224 original size:42 final size:42
Alignment explanation
Indices: 26251079--26251263 Score: 158
Period size: 43 Copynumber: 4.3 Consensus size: 42
26251069 TATCCCAGAT
* ** * * *
26251079 ATGGTCTTACATGTTATC-ACATATTGATACCACTGTCCCAGAC
1 ATGGTCTTACATGTAATCGA-ATAACGATGCCAATGTCCCA-AA
* * * * * * *
26251122 AGGGTCTTACACGAAATCGAATAACGAAGCCGATGTCCCCTAC
1 ATGGTCTTACATGTAATCGAATAACGATGCCAATGT-CCCAAA
*
26251165 ATGGTCTTACACGTAATCGAATAACGATGCCAATGTCCCAAA
1 ATGGTCTTACATGTAATCGAATAACGATGCCAATGTCCCAAA
* * *
26251207 ATGGTCTTATATGTAATCACAAT-ACAATGCCAATGTCCCAAA
1 ATGGTCTTACATGTAATC-GAATAACGATGCCAATGTCCCAAA
26251249 CATGGTCTTACATGT
1 -ATGGTCTTACATGT
26251264 GATCACATCT
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
42 38 0.33
43 74 0.64
44 4 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCGAATAACGATGCCAATGTCCCAAA
Found at i:26251269 original size:43 final size:43
Alignment explanation
Indices: 26251059--26251270 Score: 157
Period size: 43 Copynumber: 5.0 Consensus size: 43
26251049 ATAAAGCTCG
* * * *
26251059 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACAA
** * * * * * * *
26251100 TATTGATACCACTGTCCCAGACAGGGTCTTACACGAAATC-GAA
1 TA-CAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACAA
* ** * *
26251143 TAACGAA-GCCGATGTCCCCTACATGGTCTTACACGTAATC-GAA
1 T-AC-AATGCCAATGTCCCAAACATGGTCTTACATGTAATCACAA
* *
26251186 TAACGATGCCAATGTCCCAAA-ATGGTCTTATATGTAATCACAA
1 T-ACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACAA
*
26251229 TACAATGCCAATGTCCCAAACATGGTCTTACATGTGATCACA
1 TACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACA
26251271 TCTCGGTAAC
Statistics
Matches: 133, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.02
42 39 0.29
43 90 0.68
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACAA
Found at i:26251317 original size:62 final size:62
Alignment explanation
Indices: 26251220--26251347 Score: 238
Period size: 62 Copynumber: 2.1 Consensus size: 62
26251210 GTCTTATATG
*
26251220 TAATCACAATACAATGCCAATGTCCCAAACATGGTCTTACATGTGATCACATCTCGGTAACC
1 TAATCACAATACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATCTCGGTAACC
*
26251282 TAATCACAATACAATGCCAATGTCCTAAACATGGTCTTACATGTAATCACATCTCGGTAACC
1 TAATCACAATACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATCTCGGTAACC
26251344 TAAT
1 TAAT
26251348 GTCATGACAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (62 bp):
TAATCACAATACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATCTCGGTAACC
Found at i:26254467 original size:30 final size:30
Alignment explanation
Indices: 26254433--26254493 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26254423 CATTTAATAC
*
26254433 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
26254463 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
26254493 A
1 A
26254494 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:26259047 original size:30 final size:30
Alignment explanation
Indices: 26259013--26259073 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26259003 TCCTTAACTC
26259013 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
26259043 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
26259073 A
1 A
26259074 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:26260120 original size:26 final size:26
Alignment explanation
Indices: 26260089--26260148 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
26260079 TCCCCATTTT
*
26260089 AGATAGTCCTCACAGACTTCCACAAA
1 AGATAGTCCTCACAGAATTCCACAAA
* * *
26260115 AGATAGCCCTCACAGAATTCCCCCAA
1 AGATAGTCCTCACAGAATTCCACAAA
26260141 AGATAGTC
1 AGATAGTC
26260149 TTGATAGACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (26 bp):
AGATAGTCCTCACAGAATTCCACAAA
Found at i:26260213 original size:27 final size:27
Alignment explanation
Indices: 26260137--26260213 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
26260127 CAGAATTCCC
26260137 CCAAAGATAG-TCTTGATAGACTTTCTA
1 CCAAAGATAGTTC-TGATAGACTTTCTA
* * * *
26260164 -CAGAAGATAATACTGACAAACTTTCTA
1 CCA-AAGATAGTTCTGATAGACTTTCTA
*
26260191 CCAAAGATAGTTCTAATAGACTT
1 CCAAAGATAGTTCTGATAGACTT
26260214 ATACAAAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
26 2 0.05
27 33 0.87
28 3 0.08
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (27 bp):
CCAAAGATAGTTCTGATAGACTTTCTA
Found at i:26262144 original size:29 final size:28
Alignment explanation
Indices: 26262111--26262181 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
26262101 AATGAGATTG
* *
26262111 GCACTAAGTGTGCGATTTTAAATT-GTATA
1 GCACTAAGTGTGCGAGTTT-AATTATTA-A
*
26262140 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
26262168 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26262182 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 18 0.47
29 20 0.53
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:26262179 original size:28 final size:29
Alignment explanation
Indices: 26262111--26262181 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
26262101 AATGAGATTG
*
26262111 GCACTAAGTGTGCGATTTTAAATTGTATA
1 GCACTAAGTGTGCGAGTTTAAATTGTATA
* *
26262140 GCACTAAGTGTGCGAGTTT-GATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAAATTGTAT-A
26262168 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26262182 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 19 0.50
29 18 0.47
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTGTATA
Found at i:26265280 original size:161 final size:162
Alignment explanation
Indices: 26264968--26265283 Score: 415
Period size: 162 Copynumber: 2.0 Consensus size: 162
26264958 TGATGACAAA
* * *
26264968 CCCATGTGAAAGATGTTAAGAAGTTTAGGCGTTACACTTCAAGGACCCCAATCAAGCCCATAGCT
1 CCCATGTGAAAGAAGTTAAGAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAGCCCACAGCT
* * *
26265033 TAGTAATGTTATATTCAGTAGACTTGCAATGCATATCTAGAATGGATTAAAGCATTTTTTGGATA
66 TAGCAATGTTATATTCAGTAGACTTGCAATGCATATCTAGAATGGATCAAAGCATTTTTTGGACA
*
26265098 ATATGTCTTCATATCGATTGAAGATTTGTTTG
131 ATATGTCTGCATATCGATTGAAGATTTGTTTG
* *
26265130 CCCATGTGAAAGAAGTTAATAAGCTTAGGTGTTACACTTCAAGGACCCCAATCAAGCCACACA-C
1 CCCATGTGAAAGAAGTTAAGAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAGCC-CACAGC
* * *** * * * *
26265194 TTAGCCATG-TATATTTAGTCA-ACTTGTGGTTCATTTGTGGAATGGATCCAAA-CATTTTTTGG
65 TTAGCAATGTTATATTCAGT-AGACTTGCAATGCATATCTAGAATGGAT-CAAAGCATTTTTTGG
26265256 ACAATATGTCTGCATATCGATTGAAGAT
128 ACAATATGTCTGCATATCGATTGAAGAT
26265284 CTATTTTTTA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
161 64 0.48
162 66 0.50
163 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (162 bp):
CCCATGTGAAAGAAGTTAAGAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAGCCCACAGCT
TAGCAATGTTATATTCAGTAGACTTGCAATGCATATCTAGAATGGATCAAAGCATTTTTTGGACA
ATATGTCTGCATATCGATTGAAGATTTGTTTG
Found at i:26265652 original size:288 final size:286
Alignment explanation
Indices: 26265129--26265669 Score: 821
Period size: 288 Copynumber: 1.9 Consensus size: 286
26265119 AGATTTGTTT
*
26265129 GCCCATGTGAAAGAAGTTAATAAGCTTAGGTGTTACACTTCAAGGACCCCAATCAAGCCACACAC
1 GCCCATGTGAAAGAAGTTAATAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAGCCACACAC
* * * *
26265194 TTAGCCATGTATATTTAGTCAACTTGTGGTTCATTTGTGGAATGGATCCAAACATTTTTTGGACA
66 TTAGCCATGTATATTCAGTCAACTTGCGGTGCATTTGTGGAATGGATCCAAACATTTTTGGGACA
** * * *
26265259 ATATGTCTGCATATCGATTGAAGATCTATTTTTTACCTTCTCAATGCACCCTGAACCACTTGATT
131 ATATGTCTGCATATCGATTGAAGATCTATTTCATACCTTCGCAATGCACCCTAAACCACTCGATT
*
26265324 TCAAGTTTGGGATCTCAAGTTATGACCATTTTAGTGAAGACTAAATGAGTAGAATTTTCTGTGGA
196 TCAAGTTTGGGATCTCAAGTTATGACAATTTTAGTGAAGACTAAATGAGTAGAATTTTCTGTGGA
26265389 CTTAAAATATCAATCCATGACAACAA
261 CTTAAAATATCAATCCATGACAACAA
* * *
26265415 GCCCATGTGGAAGATGTTAATAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAGCCCACACG
1 GCCCATGTGAAAGAAGTTAATAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAG-CCACACA
* ** * *
26265480 CTTAGTCATGTTATATTCAGTTGACTTGCGGTGCATTTGTGGCATGGATCCAAGCATTTTTGGGA
65 CTTAGCCATG-TATATTCAGTCAACTTGCGGTGCATTTGTGGAATGGATCCAAACATTTTTGGGA
* * **
26265545 CAATATGTCTGCATATCGATTGAAGATTTGTTTCATACCTTCGCAATGCACTTTAAACCACTCGA
129 CAATATGTCTGCATATCGATTGAAGATCTATTTCATACCTTCGCAATGCACCCTAAACCACTCGA
** * *
26265610 TTTTGAGTTTGGGATCTCAAGTTATGACAATTTTATTGAAGACTACATGAGTAGAATTTT
194 TTTCAAGTTTGGGATCTCAAGTTATGACAATTTTAGTGAAGACTAAATGAGTAGAATTTT
26265670 TGGACGAGAT
Statistics
Matches: 226, Mismatches: 27, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
286 54 0.24
287 15 0.07
288 157 0.69
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (286 bp):
GCCCATGTGAAAGAAGTTAATAAGCTTAGGCGTTACACTTCAAGGACCCCAATCAAGCCACACAC
TTAGCCATGTATATTCAGTCAACTTGCGGTGCATTTGTGGAATGGATCCAAACATTTTTGGGACA
ATATGTCTGCATATCGATTGAAGATCTATTTCATACCTTCGCAATGCACCCTAAACCACTCGATT
TCAAGTTTGGGATCTCAAGTTATGACAATTTTAGTGAAGACTAAATGAGTAGAATTTTCTGTGGA
CTTAAAATATCAATCCATGACAACAA
Found at i:26267379 original size:46 final size:48
Alignment explanation
Indices: 26267238--26267504 Score: 240
Period size: 47 Copynumber: 5.7 Consensus size: 48
26267228 TTATTTGTGT
* *
26267238 GCCAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCCACCTTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
*
26267284 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGA
* * *
26267332 GCTAATGTAAGA-CATGTTTGGGACAT-GCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * *
26267378 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC--GA-GATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGA-GA
** * *
26267424 GTTAGTGTAAGACCATGTCTGGGACATGG--TAGTG--AC-TTGATGGATAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCCACATT-AT-GA-GA
26267471 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
26267505 ACATTATACC
Statistics
Matches: 181, Mismatches: 22, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 7 0.04
46 63 0.35
47 70 0.39
48 31 0.17
49 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:26267404 original size:94 final size:93
Alignment explanation
Indices: 26267243--26267510 Score: 325
Period size: 94 Copynumber: 2.9 Consensus size: 93
26267233 TGTGTGCCAG
*
26267243 TGTAAGACATGTCTGGGACATACATCGGCCACCTTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCA-CTTATGAGAGCCAGTGTAAGACCATGTCTGGGA
26267308 CATGGCATCGGCATTGA-GACGA-GAGCTAA
65 CATGGCATCGGCATT-ACGA-GATGAGCTAA
*
26267337 TGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-TTATGAGAGCCAGTGTAAGACCATGTCTGGGA
* * *
26267402 CATGGCATCGGC--TACGAGATGTGTTAG
65 CATGGCATCGGCATTACGAGATGAGCTAA
* * *
26267429 TGTAAGACCATGTCTGGGACATG-GTAGTG--ACTTGATGGATAAGCCAGTGTAAGACCATGTCT
1 TGTAAGA-CATGTCTGGGACATGCATCG-GCCACTT-AT-GA-GAGCCAGTGTAAGACCATGTCT
*
26267491 GGGACATGGCATCGACATTA
61 GGGACATGGCATCGGCATTA
26267511 TACCTTATGT
Statistics
Matches: 154, Mismatches: 10, Indels: 19
0.84 0.05 0.10
Matches are distributed among these distances:
90 2 0.01
91 7 0.05
92 18 0.12
93 52 0.34
94 73 0.47
95 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACTTATGAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCATTACGAGATGAGCTAA
Found at i:26272605 original size:19 final size:20
Alignment explanation
Indices: 26272583--26272622 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26272573 AATTTGAAAC
*
26272583 AAAATA-GAAAATTTTGGAA
1 AAAATACGAAAATTTGGGAA
26272602 AAAATACGAAAATTTGGGAA
1 AAAATACGAAAATTTGGGAA
26272622 A
1 A
26272623 CAGGGATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.57, C:0.03, G:0.17, T:0.23
Consensus pattern (20 bp):
AAAATACGAAAATTTGGGAA
Found at i:26273653 original size:12 final size:13
Alignment explanation
Indices: 26273621--26273658 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
26273611 GTTTAATTGG
26273621 TTCCATTTTCACA
1 TTCCATTTTCACA
*
26273634 TGCCATTTTCA-A
1 TTCCATTTTCACA
26273646 TTCCATTTTCACA
1 TTCCATTTTCACA
26273659 CAACATATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.24, C:0.29, G:0.03, T:0.45
Consensus pattern (13 bp):
TTCCATTTTCACA
Found at i:26274023 original size:48 final size:47
Alignment explanation
Indices: 26273905--26274081 Score: 239
Period size: 48 Copynumber: 3.7 Consensus size: 47
26273895 AATCGATAAG
* *** *
26273905 TACCTATACCATGGCACGTAGCCAAATCAAGGTAACTTATC-CTGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-TCTCCAAAA
* *
26273952 TACCTATACCATTGCCGGTAGCCAAATCAAGGTAACTCTTCTCCAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT-TTCTCCAAAA
26274000 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTTTCTCCAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TTTCTCCAAAA
* *
26274048 TACCAATACCATGGCCCGTAGACAAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
26274082 TAACTCACAC
Statistics
Matches: 116, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
47 36 0.31
48 79 0.68
49 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTTCTCCAAAA
Found at i:26281325 original size:40 final size:39
Alignment explanation
Indices: 26281258--26281423 Score: 206
Period size: 40 Copynumber: 4.2 Consensus size: 39
26281248 CCTTCGGAGT
* ** * *
26281258 TTAGCCAGGTATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGAC
*
26281297 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGAC
* *
26281337 TTAGCCCGGTATAATAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGAC
* ** *
26281376 TTAGCTCGAAATTAGTAGCTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGAC
26281416 TTAGCCCG
1 TTAGCCCG
26281424 AAATTAGCCA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 43 0.39
40 67 0.61
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:26281444 original size:40 final size:40
Alignment explanation
Indices: 26281269--26281463 Score: 166
Period size: 40 Copynumber: 4.9 Consensus size: 40
26281259 TAGCCAGGTA
* **
26281269 TAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCG-GTT
1 TAGCCACTAGCACAAATGCCTTCGGGACTTAGCCCGAAAT
** * **
26281308 ATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGTA-
1 -TAGCCACTAGCACAAATGCCTTCGGGACTTAGCCCGAAAT
*** *
26281348 TAATAACTCA-CACAAATGCCTTCGGGACTTAGCTCGAAAT
1 TAGCCACT-AGCACAAATGCCTTCGGGACTTAGCCCGAAAT
* *
26281388 TAG-TAGCTCGCACAAATGCCTTCGGGACTTAGCCCGAAAT
1 TAGCCA-CTAGCACAAATGCCTTCGGGACTTAGCCCGAAAT
** *
26281428 TAGCCACTAGTTCAAATG-CTCTCGTGACTTAGCCCG
1 TAGCCACTAGCACAAATGCCT-TCGGGACTTAGCCCG
26281464 GTTATCATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
39 36 0.28
40 91 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TAGCCACTAGCACAAATGCCTTCGGGACTTAGCCCGAAAT
Found at i:26289224 original size:40 final size:40
Alignment explanation
Indices: 26289180--26289442 Score: 356
Period size: 40 Copynumber: 6.6 Consensus size: 40
26289170 GCCACTAGCT
* * *
26289180 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAGCTCGCA
* * * *
26289220 CAAATGCCTTCGGGAC-TAGCCTGGTA-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
26289258 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
26289298 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
26289338 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
* * * *
26289378 CAAATGCCTTCGGGACTTAGCCCGAAATTAGCCA-CTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAG-TAGCTCGCA
*
26289418 CAAATG-CTCTCGTGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
26289443 TTATCATCCG
Statistics
Matches: 204, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
38 26 0.13
39 17 0.08
40 160 0.78
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
Found at i:26293472 original size:22 final size:22
Alignment explanation
Indices: 26293444--26293489 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26293434 ATACACGGCT
26293444 ACGTTGCAGGATGTGTCTCAAA
1 ACGTTGCAGGATGTGTCTCAAA
26293466 ACGTTGCAGGATGTGTCTCAAA
1 ACGTTGCAGGATGTGTCTCAAA
26293488 AC
1 AC
26293490 AGGAGTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (22 bp):
ACGTTGCAGGATGTGTCTCAAA
Found at i:26295451 original size:27 final size:26
Alignment explanation
Indices: 26295385--26295471 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 26
26295375 AGCTGCTAGA
*
26295385 AACAATAAATGTGGCAAAGCCACCAGT
1 AACAAT-AATGTGGCATAGCCACCAGT
** * *
26295412 ATTAGTAATTGTGGCATACCCACCAGT
1 AACAATAA-TGTGGCATAGCCACCAGT
* *
26295439 AACAATGAATGTGACATAGTCACCAGT
1 AACAAT-AATGTGGCATAGCCACCAGT
26295466 -ACAATA
1 AACAATA
26295472 CTTCCTCCAT
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
25 1 0.02
26 7 0.15
27 37 0.79
28 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (26 bp):
AACAATAATGTGGCATAGCCACCAGT
Found at i:26295681 original size:27 final size:27
Alignment explanation
Indices: 26295651--26295727 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
26295641 ATCCTATAAA
**
26295651 GGTATTTCGATAATTTTGCAAATC-GTG
1 GGTATTTCGATAATTTCACAAATCAG-G
26295678 GGTATTTC-AGTAATTTCACAAATCAGG
1 GGTATTTCGA-TAATTTCACAAATCAGG
* *
26295705 GGTATTTTGGTAATTTCACAAAT
1 GGTATTTCGATAATTTCACAAAT
26295728 TGGGGTCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCGATAATTTCACAAATCAGG
Found at i:26295972 original size:18 final size:17
Alignment explanation
Indices: 26295942--26295975 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26295932 TATCAGTGTG
*
26295942 GGGCCCACGAGCCCATT
1 GGGCCCACCAGCCCATT
26295959 GGGCCCACACAGCCCAT
1 GGGCCCAC-CAGCCCAT
26295976 CGAGGCCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.26, T:0.09
Consensus pattern (17 bp):
GGGCCCACCAGCCCATT
Found at i:26304154 original size:17 final size:17
Alignment explanation
Indices: 26304132--26304166 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26304122 CAAGATGAAA
26304132 TATCTTGTAGTTAAACC
1 TATCTTGTAGTTAAACC
26304149 TATCTTGTAGTTAAACC
1 TATCTTGTAGTTAAACC
26304166 T
1 T
26304167 GACTCTCAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TATCTTGTAGTTAAACC
Found at i:26307707 original size:22 final size:22
Alignment explanation
Indices: 26307680--26307728 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
26307670 AAAATCTGTG
*
26307680 TTTTTTTTCTTTA-TTTTATTTTA
1 TTTTTATT-TTTATTTTTA-TTTA
26307703 TTTTTATTTTTATTTTTATTTA
1 TTTTTATTTTTATTTTTATTTA
26307725 TTTT
1 TTTT
26307729 CACACTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTATTTTTATTTTTATTTA
Found at i:26307709 original size:6 final size:6
Alignment explanation
Indices: 26307689--26307723 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
26307679 GTTTTTTTTC
26307689 TTTA-T TTTA-T TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
26307724 ATTTTCACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:26310701 original size:45 final size:45
Alignment explanation
Indices: 26310638--26310772 Score: 200
Period size: 45 Copynumber: 3.0 Consensus size: 45
26310628 TTTTGGTATA
* * *
26310638 TGTTTTCGTGTAAGACCACATCTAGGATGTTGGCATCGATATATG
1 TGTTTTCATGTAAGACCACATCTGGGACGTTGGCATCGATATATG
*
26310683 TGTTTTCATGTCAA-ACCACGTCTGGGACGTTGGCATCGATATATG
1 TGTTTTCATGT-AAGACCACATCTGGGACGTTGGCATCGATATATG
* *
26310728 TATTTTCATGTAAGACCACATCTGGGACGTTGGCATCAATATATG
1 TGTTTTCATGTAAGACCACATCTGGGACGTTGGCATCGATATATG
26310773 ATTACGAGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
44 2 0.02
45 77 0.95
46 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (45 bp):
TGTTTTCATGTAAGACCACATCTGGGACGTTGGCATCGATATATG
Found at i:26312898 original size:40 final size:40
Alignment explanation
Indices: 26312807--26312887 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
26312797 TCATATTATA
26312807 TATTGCGATAGTGTGATGACTTCTGACATTTGAAAATGTG
1 TATTGCGATAGTGTGATGACTTCTGACATTTGAAAATGTG
26312847 TATTGCGATAGTGTGATGACTTCTGACATTTGAAAATGTG
1 TATTGCGATAGTGTGATGACTTCTGACATTTGAAAATGTG
26312887 T
1 T
26312888 TTTCGTATAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (40 bp):
TATTGCGATAGTGTGATGACTTCTGACATTTGAAAATGTG
Found at i:26317051 original size:24 final size:24
Alignment explanation
Indices: 26316997--26317054 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
26316987 GAATCAGTAT
*
26316997 ACTCTTACGAGCTGCAAACGGTAA
1 ACTCTTCCGAGCTGCAAACGGTAA
*
26317021 ACTCTTCCGAGCTGTAAACGGTAA
1 ACTCTTCCGAGCTGCAAACGGTAA
26317045 ACTCTTCCGA
1 ACTCTTCCGA
26317055 ACTAAATAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (24 bp):
ACTCTTCCGAGCTGCAAACGGTAA
Found at i:26319229 original size:25 final size:25
Alignment explanation
Indices: 26319201--26319269 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 25
26319191 CTCTTTTAAT
*
26319201 AACTGGGGCAAACCCCTTTTT-GATA
1 AACTAGGGCAAA-CCCTTTTTCGATA
*
26319226 AACTAGGGCAAAGCCTTTTTCGATA
1 AACTAGGGCAAACCCTTTTTCGATA
*
26319251 AACTAGGGCATAGCCCTTT
1 AACTAGGGCA-AACCCTTT
26319270 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 7 0.18
25 25 0.66
26 6 0.16
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (25 bp):
AACTAGGGCAAACCCTTTTTCGATA
Found at i:26319329 original size:10 final size:10
Alignment explanation
Indices: 26319314--26319348 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
26319304 GCATATATAT
26319314 ATATCATGGC
1 ATATCATGGC
26319324 ATATCATGTGC
1 ATATCATG-GC
26319335 ATATCATGGC
1 ATATCATGGC
26319345 ATAT
1 ATAT
26319349 TATGTACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (10 bp):
ATATCATGGC
Found at i:26319340 original size:21 final size:21
Alignment explanation
Indices: 26319314--26319353 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26319304 GCATATATAT
26319314 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
*
26319335 ATATCATGGCATATTATGT
1 ATATCATGGCATATCATGT
26319354 ACAAATCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:26319361 original size:21 final size:21
Alignment explanation
Indices: 26319316--26319361 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
26319306 ATATATATAT
* *
26319316 ATCATGGCATATCATGTGCAT
1 ATCATGGCATATCATGTACAA
*
26319337 ATCATGGCATATTATGTACAA
1 ATCATGGCATATCATGTACAA
26319358 ATCA
1 ATCA
26319362 GTATCACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
ATCATGGCATATCATGTACAA
Found at i:26326882 original size:31 final size:31
Alignment explanation
Indices: 26326801--26326885 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 31
26326791 TCAATCTCAG
*
26326801 CATAT-ACTGGGCCAAAGCCTTTAAATTATT
1 CATATCACTGGGCCGAAGCCTTTAAATTATT
* * * **
26326831 CATACCACTGGACCGGAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTAAATTATT
*
26326862 CATATCACTGGGTCGAAGCCTTTA
1 CATATCACTGGGCCGAAGCCTTTA
26326886 CTGTAAACGG
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
30 4 0.09
31 39 0.91
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTAAATTATT
Found at i:26327133 original size:25 final size:25
Alignment explanation
Indices: 26327105--26327173 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
26327095 CTCTTTTAAT
*
26327105 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
26327130 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
26327155 AACTGGGGCATAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
26327174 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:26327233 original size:10 final size:10
Alignment explanation
Indices: 26327218--26327252 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
26327208 GCATATATAT
26327218 ATATCATGGC
1 ATATCATGGC
26327228 ATATCATGTGC
1 ATATCATG-GC
26327239 ATATCATGGC
1 ATATCATGGC
26327249 ATAT
1 ATAT
26327253 TATGTACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (10 bp):
ATATCATGGC
Found at i:26327244 original size:21 final size:21
Alignment explanation
Indices: 26327218--26327257 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26327208 GCATATATAT
26327218 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
*
26327239 ATATCATGGCATATTATGT
1 ATATCATGGCATATCATGT
26327258 ACAAATCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:26327265 original size:21 final size:21
Alignment explanation
Indices: 26327220--26327265 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
26327210 ATATATATAT
* *
26327220 ATCATGGCATATCATGTGCAT
1 ATCATGGCATATCATGTACAA
*
26327241 ATCATGGCATATTATGTACAA
1 ATCATGGCATATCATGTACAA
26327262 ATCA
1 ATCA
26327266 GTATCACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
ATCATGGCATATCATGTACAA
Found at i:26333198 original size:28 final size:28
Alignment explanation
Indices: 26333158--26333309 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
26333148 ATATTAAGTC
* *
26333158 CGCACACTCAGTGCTATGTAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26333186 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26333214 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26333242 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26333270 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26333299 CGCACACTTAG
1 CGCACACTTAG
26333310 CGCCAATCTC
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 101 0.86
29 16 0.14
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26335551 original size:44 final size:45
Alignment explanation
Indices: 26335453--26335619 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 45
26335443 AGAAACGACA
* * * ** **
26335453 AAGACCATAATTAAAAGATATCATGGCATTTTACCCAAAATGAGT
1 AAGACCATAGTTGAAAGATATTATGGCATTAAACTGAAAATGAGT
* *
26335498 AAGACCATAGTTGAAAGATACTATGGCATTAAACTG-AAATGAAT
1 AAGACCATAGTTGAAAGATATTATGGCATTAAACTGAAAATGAGT
* * * *
26335542 AAGACCATAGTTGAAAGATATTATGACACTAAATTGAAAATGTGT
1 AAGACCATAGTTGAAAGATATTATGGCATTAAACTGAAAATGAGT
*
26335587 AAGACCATAGTTGAAAGATATTATTGCATTAAA
1 AAGACCATAGTTGAAAGATATTATGGCATTAAA
26335620 TACAACCATA
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
44 39 0.38
45 64 0.62
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.28
Consensus pattern (45 bp):
AAGACCATAGTTGAAAGATATTATGGCATTAAACTGAAAATGAGT
Found at i:26335602 original size:22 final size:22
Alignment explanation
Indices: 26335541--26335609 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
26335531 CTGAAATGAA
26335541 TAAGACCATAGTTGAAAGATAT
1 TAAGACCATAGTTGAAAGATAT
* * *
26335563 TATGA-CACTAAATTGAAA-ATGT
1 TAAGACCA-T-AGTTGAAAGATAT
26335585 GTAAGACCATAGTTGAAAGATAT
1 -TAAGACCATAGTTGAAAGATAT
26335608 TA
1 TA
26335610 TTGCATTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
21 2 0.06
22 17 0.47
23 15 0.42
24 2 0.06
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.29
Consensus pattern (22 bp):
TAAGACCATAGTTGAAAGATAT
Found at i:26335620 original size:45 final size:45
Alignment explanation
Indices: 26335489--26335620 Score: 187
Period size: 44 Copynumber: 3.0 Consensus size: 45
26335479 CATTTTACCC
* * *
26335489 AAAATGAGTAAGACCATAGTTGAAAGATACTATGGCATTAAACTG
1 AAAATGAGTAAGACCATAGTTGAAAGATATTATTGCATTAAATTG
* *
26335534 -AAATGAATAAGACCATAGTTGAAAGATATTA-TGACACTAAATTG
1 AAAATGAGTAAGACCATAGTTGAAAGATATTATTG-CATTAAATTG
*
26335578 AAAATGTGTAAGACCATAGTTGAAAGATATTATTGCATTAAAT
1 AAAATGAGTAAGACCATAGTTGAAAGATATTATTGCATTAAAT
26335621 ACAACCATAG
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.01
44 37 0.49
45 36 0.47
46 2 0.03
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.28
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGTTGAAAGATATTATTGCATTAAATTG
Found at i:26337386 original size:33 final size:32
Alignment explanation
Indices: 26337337--26337400 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
26337327 CTCGCTGCAA
* *
26337337 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
26337370 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
26337401 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:26337414 original size:27 final size:26
Alignment explanation
Indices: 26337362--26337421 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
26337352 ACATATATAT
*
26337362 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
26337388 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
26337415 ATATCTG
1 ATATCTG
26337422 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:26344920 original size:6 final size:6
Alignment explanation
Indices: 26344909--26344935 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26344899 TTACCATCAC
26344909 TTTCTT TTTCTT TTTCTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTT
26344936 GCCACAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:26349774 original size:138 final size:138
Alignment explanation
Indices: 26349433--26349839 Score: 633
Period size: 138 Copynumber: 3.0 Consensus size: 138
26349423 GAACATAGAC
*
26349433 ATAATTAATATATGAATTTGATTCATACAAAATATTAACTGTATATATTTTACCGAATTTATTAA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAA
** * * *
26349498 TAT-AAGCAGT-TA-T-ATTAA----GGTCAAAATATAAAAGACATAGAAATTAATA---TTTTG
66 TATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
26349552 AAAAGAAT
131 AAAAGAAT
26349560 ATAATTAATATATGAATTTGATTCAT--AAAATATTAATTGTATATATTTTACCGAATTTATTAA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAA
*
26349623 TATAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
66 TATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
26349688 AAAAGAAT
131 AAAAGAAT
*
26349696 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAA
1 ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAA
*
26349761 TATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG
66 TATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
*
26349826 GAAAGAAT
131 AAAAGAAT
26349834 ATAATT
1 ATAATT
26349840 CATTTTTCTA
Statistics
Matches: 256, Mismatches: 11, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
125 39 0.15
126 3 0.01
127 28 0.11
128 1 0.00
129 5 0.02
133 29 0.11
136 39 0.15
138 112 0.44
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (138 bp):
ATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAA
TATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
AAAAGAAT
Found at i:26349797 original size:67 final size:67
Alignment explanation
Indices: 26349586--26349797 Score: 175
Period size: 67 Copynumber: 3.1 Consensus size: 67
26349576 TTTGATTCAT
* *
26349586 AAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
1 AAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCAG
26349651 TC
66 TC
** * ** * * * * *
26349653 AAAATA-TAAAAG-ACATGGAAATTA--ATATTCTTTTGAAAAGAATATAATTAATATATGAATT
1 AAAATATTAATTGTATAT--ATTTTACCAAATT-TATT-AATATAA-AAAATT-ATAT-T-AA-T
*
26349714 TGA-TTCA-TAC
57 TAATTTCAGT-C
26349724 AAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCAG
1 AAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCAG
26349789 TC
66 TC
26349791 AAAATAT
1 AAAATAT
26349798 AAAAGACATG
Statistics
Matches: 105, Mismatches: 24, Indels: 32
0.65 0.15 0.20
Matches are distributed among these distances:
65 6 0.06
66 10 0.10
67 29 0.28
68 6 0.06
69 8 0.08
70 7 0.07
71 22 0.21
72 10 0.10
73 7 0.07
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (67 bp):
AAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAATTATATTAATTAATTTCAG
TC
Found at i:26352873 original size:49 final size:49
Alignment explanation
Indices: 26352816--26352940 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 49
26352806 GCACATTAAA
* * * * * * *
26352816 GTCGATGCCGTGTCCTAGATAGGTCTTACGCTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCCCAAACAGGTCTTACACCGACTCTCATATATC-AGT
* *
26352865 GTCGATGCCATGTCCCAAACAGGTCTTACACCGGCTCTCATCTATCAGT
1 GTCGATGCCATGTCCCAAACAGGTCTTACACCGACTCTCATATATCAGT
26352914 GTCGATGCCATGTCCCAAACAGGTCTT
1 GTCGATGCCATGTCCCAAACAGGTCTT
26352941 GCACTGACAC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
48 2 0.03
49 64 0.97
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAAACAGGTCTTACACCGACTCTCATATATCAGT
Found at i:26360687 original size:49 final size:49
Alignment explanation
Indices: 26360578--26360755 Score: 186
Period size: 49 Copynumber: 3.7 Consensus size: 49
26360568 ATAAAATACA
* * * * *
26360578 GATGCCATGTCCCAGACATGGTCTTACACTGTCTAGCACAT-TAAAGTC-
1 GATGCCATGTCCCAGACA-GGTCTTACACTGACTATCATATATCAAGGCT
* *
26360626 GATGCCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATATCAAGGCT
* * * *
26360675 GATGCCATGTCCCAAACAGGTCTTACACT-AGCTCTCATCTATC--GGTGT
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTATCATATATCAAGG-CT
26360723 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 -GATGCCATGTCCCAGACAGGTCTTACACTGAC
26360756 CCACAACAAG
Statistics
Matches: 111, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
47 20 0.18
48 24 0.22
49 66 0.59
50 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATATCAAGGCT
Found at i:26365101 original size:26 final size:26
Alignment explanation
Indices: 26365070--26365121 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26365060 TAAATCTGTC
26365070 TAAATACAACTTGTTAGAATTGAGTG
1 TAAATACAACTTGTTAGAATTGAGTG
26365096 TAAATACAACTTGTTAGAATTGAGTG
1 TAAATACAACTTGTTAGAATTGAGTG
26365122 ACCCGAACCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (26 bp):
TAAATACAACTTGTTAGAATTGAGTG
Found at i:26371899 original size:5 final size:5
Alignment explanation
Indices: 26371889--26371916 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
26371879 TTGTGTGTTC
26371889 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
26371917 TACACATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:26376449 original size:37 final size:36
Alignment explanation
Indices: 26376383--26376457 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 36
26376373 GGATTAAGAT
*
26376383 TCAATTTCTTAACTTCTTTAAAAATAAGAAAGTGAA
1 TCAATTTCTTAACTTCTTTAAAAACAAGAAAGTGAA
26376419 TCAATTTCTTAACTAAT-TTTAAAAACAAGAAAGTGAA
1 TCAATTTCTTAACT--TCTTTAAAAACAAGAAAGTGAA
26376456 TC
1 TC
26376458 TTGGTGTTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
36 14 0.39
37 21 0.58
38 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (36 bp):
TCAATTTCTTAACTTCTTTAAAAACAAGAAAGTGAA
Found at i:26378832 original size:33 final size:33
Alignment explanation
Indices: 26378785--26378856 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
26378775 TCTTAGTGAG
26378785 CTGAGTAAGAGGACGTGCTATCAATCCATAGTTC
1 CTGA-TAAGAGGACGTGCTATCAATCCATAGTTC
* *
26378819 CTGATAAGAGGACGTGCTATTAGTCCATAGTTC
1 CTGATAAGAGGACGTGCTATCAATCCATAGTTC
*
26378852 ATGAT
1 CTGAT
26378857 GAATTTGCGA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 31 0.89
34 4 0.11
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (33 bp):
CTGATAAGAGGACGTGCTATCAATCCATAGTTC
Found at i:26382318 original size:49 final size:49
Alignment explanation
Indices: 26382225--26382451 Score: 171
Period size: 49 Copynumber: 4.7 Consensus size: 49
26382215 ACATTAAAGT
* * * * *
26382225 CGATGCCATTTCGCAGACAGGTCTTACATTAACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGC
* * * * *
26382274 CGATGCCATGTCCCTGACAGGTCTTACATTGGCTCTCATCTATCG-GTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAG-GC
* ** * *
26382323 TGATGCCATGTCCTTGACAGGTCTTACACTAGCT-T-GTATATCCCAAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAT--CGAGGC
* * * *
26382372 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--ATCTCAATGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGC
* * * *
26382418 CGATG-CATGTCCTAGGCATGTCTTACACTGGCTC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTC
26382452 ACCTACCACC
Statistics
Matches: 147, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
46 36 0.24
47 4 0.03
48 30 0.20
49 76 0.52
50 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGC
Found at i:26382438 original size:46 final size:47
Alignment explanation
Indices: 26382324--26382451 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
26382314 TATCGGTGTT
* * * *
26382324 GATGCCATGTCCTTGACAGGTCTTACACTAGCTTGTATATCCCAAGGCC
1 GATG-CATGTCCTAGACATGTCTTACACTAGC-TCTACATCCCAAGGCC
* * *
26382373 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGCTCTACATCCCAAGGCC
* *
26382419 GATGCATGTCCTAGGCATGTCTTACACTGGCTC
1 GATGCATGTCCTAGACATGTCTTACACTAGCTC
26382452 ACCTACCACC
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 39 0.57
47 2 0.03
48 24 0.35
49 4 0.06
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCTCTACATCCCAAGGCC
Found at i:26384748 original size:51 final size:49
Alignment explanation
Indices: 26384672--26384860 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
26384662 TGAGGTCGCA
* * *
26384672 TGTGTAGCACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GGTCACG
* * ** *
26384723 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT-GGTCACG
* * * * * * *
26384773 TGTGTAGTACTAAGTGCAGGGTACTACGTGTAGCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCACG
*
26384822 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
26384861 GCTTTGGCTA
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
49 37 0.32
50 43 0.38
51 34 0.30
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCACG
Found at i:26390156 original size:56 final size:56
Alignment explanation
Indices: 26389993--26390127 Score: 225
Period size: 56 Copynumber: 2.4 Consensus size: 56
26389983 CCATGACATC
* *
26389993 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTTT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
* *
26390049 GATTTATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGAATCT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
*
26390105 GATATATGTGTGTGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
26390128 CCGTCTAGGA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
Found at i:26393117 original size:5 final size:5
Alignment explanation
Indices: 26393107--26393132 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26393097 CAAGTTATAC
26393107 GAAAA GAAAA GAAAA GAAAA GAAAA G
1 GAAAA GAAAA GAAAA GAAAA GAAAA G
26393133 CTGATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:26393767 original size:15 final size:15
Alignment explanation
Indices: 26393744--26393773 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26393734 CTTGTAGAGT
*
26393744 CTACTGAGTTTGTGA
1 CTACAGAGTTTGTGA
26393759 CTACAGAGTTTGTGA
1 CTACAGAGTTTGTGA
26393774 TTAGAATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (15 bp):
CTACAGAGTTTGTGA
Found at i:26398761 original size:56 final size:56
Alignment explanation
Indices: 26398672--26398810 Score: 215
Period size: 56 Copynumber: 2.5 Consensus size: 56
26398662 GACATAGGAT
* *
26398672 TCTGATATGTGATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAC
1 TCTGATATATG-TGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAC
*
26398729 TTTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAC
1 TCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAC
** *
26398785 TCCAATATATGTGTGTGAGTAAGACC
1 TCTGATATATGTGTGCGAGTAAGACC
26398811 CTGTCTAGGA
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
56 66 0.88
57 9 0.12
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (56 bp):
TCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGAC
Found at i:26398831 original size:56 final size:56
Alignment explanation
Indices: 26398684--26398839 Score: 172
Period size: 56 Copynumber: 2.8 Consensus size: 56
26398674 TGATATGTGA
* * * ***
26398684 TGTGCGAGTAAGACCACGTTTAATAC-GTTGGCATCGATATGTGACTTTGATATATG
1 TGTGCGAGTAAGACCACGTCTAAGACAG-TGACATCGATATGTGACTCCAATATATG
* * * *
26398740 TGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGACTCCAATATATG
1 TGTGCGAGTAAGACCACGTCTAAGACAGTGACATCGATATGTGACTCCAATATATG
* *
26398796 TGTGTGAGTAAGACC-CTGTCTAGGACAGTGACATCGATATGTGA
1 TGTGCGAGTAAGACCAC-GTCTAAGACAGTGACATCGATATGTGA
26398840 TTACATGTAA
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 87 0.99
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (56 bp):
TGTGCGAGTAAGACCACGTCTAAGACAGTGACATCGATATGTGACTCCAATATATG
Found at i:26403765 original size:18 final size:18
Alignment explanation
Indices: 26403742--26403776 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26403732 CTTAATATGG
*
26403742 ATAATTTCGAAAATTTTT
1 ATAATTTAGAAAATTTTT
*
26403760 ATAATTTATAAAATTTT
1 ATAATTTAGAAAATTTT
26403777 AAATTAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTAGAAAATTTTT
Found at i:26403861 original size:15 final size:16
Alignment explanation
Indices: 26403841--26403880 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
26403831 TTTAATTTTT
26403841 TATAAATTA-TAAAAA
1 TATAAATTATTAAAAA
*
26403856 TATAAACTATTAAAAA
1 TATAAATTATTAAAAA
*
26403872 TAAAAATTA
1 TATAAATTA
26403881 CAATTTTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
TATAAATTATTAAAAA
Found at i:26403913 original size:82 final size:82
Alignment explanation
Indices: 26403755--26403915 Score: 184
Period size: 82 Copynumber: 2.0 Consensus size: 82
26403745 ATTTCGAAAA
* * * * * *
26403755 TTTTTATAATTTATAAAATTTTAAATTAATAATAATAAAATTACATTTTGACCTTTTAAAAAAAA
1 TTTTTATAAATTATAAAAATATAAACTAATAAAAATAAAATTACATTTTGACCTATTAAAAAAAA
*
26403820 TAAAAATTTAATTTAAT
66 TAAAAACTTAATTTAAT
* *
26403837 TTTTTATAAATTATAAAAATATAAACTATTAAAAATAAAAATTACAATTTT-A-CTATT-ATAAA
1 TTTTTATAAATTATAAAAATATAAACTAATAAAAAT-AAAATTAC-ATTTTGACCTATTAAAAAA
*
26403899 AATATACAACTTAATTT
64 AATA-AAAACTTAATTT
26403916 CAATCCTATA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
81 8 0.12
82 44 0.67
83 9 0.14
84 5 0.08
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (82 bp):
TTTTTATAAATTATAAAAATATAAACTAATAAAAATAAAATTACATTTTGACCTATTAAAAAAAA
TAAAAACTTAATTTAAT
Found at i:26406366 original size:6 final size:6
Alignment explanation
Indices: 26406329--26406388 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
26406319 ATTATGAGAT
* * *
26406329 AATA-A AATATA AAAATA AAAATA AATATA AATATA AATCTA AACTA-A
1 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AA-TATA
*
26406376 AGTAT- AATATA AA
1 AATATA AATATA AA
26406389 GTGAAACTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
5 10 0.22
6 34 0.76
7 1 0.02
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (6 bp):
AATATA
Found at i:26408987 original size:30 final size:30
Alignment explanation
Indices: 26408953--26409012 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26408943 ACTTAACAAG
*
26408953 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** *
26408983 CAAATGGCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
26409013 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:26410811 original size:40 final size:40
Alignment explanation
Indices: 26410747--26410822 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
26410737 ATATGGTACC
*
26410747 ACTTGGTGTGTAGGGTTGGATGGGTTGATTCTATCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGGGTTGATTCTATCCCCAT
* * *
26410787 ACTTGGTTTGTAGGGCTGGGTGGGTTGATTTTATCC
1 ACTTGGTGTGTAGGGCTGGATGGGTTGATTCTATCC
26410823 TCACATGGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.13, C:0.13, G:0.34, T:0.39
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGATGGGTTGATTCTATCCCCAT
Found at i:26420572 original size:20 final size:20
Alignment explanation
Indices: 26420547--26420586 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26420537 AATATTTTCC
*
26420547 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
26420567 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
26420587 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:26420601 original size:34 final size:35
Alignment explanation
Indices: 26420535--26420601 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
26420525 CAAACACCAG
*
26420535 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
26420570 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
26420602 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:26424395 original size:24 final size:25
Alignment explanation
Indices: 26424348--26424393 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
26424338 TTTCTCTCTT
*
26424348 CTTTCTTTCTTTCCTCCTTCTTTCC
1 CTTTCTTTCTTCCCTCCTTCTTTCC
26424373 CTTTC-TTCTTCCCTCC-TCTTT
1 CTTTCTTTCTTCCCTCCTTCTTT
26424394 TCTCCCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 10 0.50
25 5 0.25
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (25 bp):
CTTTCTTTCTTCCCTCCTTCTTTCC
Found at i:26441805 original size:11 final size:11
Alignment explanation
Indices: 26441789--26441816 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26441779 AGCAAGCTTG
26441789 AAACATCTTTA
1 AAACATCTTTA
26441800 AAACATCTTTA
1 AAACATCTTTA
26441811 AAACAT
1 AAACAT
26441817 AGAATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACATCTTTA
Found at i:26447601 original size:47 final size:47
Alignment explanation
Indices: 26447532--26447856 Score: 488
Period size: 47 Copynumber: 6.7 Consensus size: 47
26447522 CCCTTCGGGA
* * *
26447532 CTTATCACATTTATACACTTTCACATTCACCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26447579 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26447626 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
26447675 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26447722 CTTATCACATATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26447773 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26447822 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
26447857 AGAATCCTAA
Statistics
Matches: 257, Mismatches: 15, Indels: 12
0.90 0.05 0.04
Matches are distributed among these distances:
47 123 0.48
49 89 0.35
51 45 0.18
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26447694 original size:96 final size:96
Alignment explanation
Indices: 26447532--26447856 Score: 496
Period size: 96 Copynumber: 3.4 Consensus size: 96
26447522 CCCTTCGGGA
* *
26447532 CTTATCACAT-T-TATACACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26447595 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
26447626 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26447691 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
26447722 CTTATCACATATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
* * *
26447787 ATACACTTTCACATTCACCACATTGGCCATTCGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
26447822 CTTATCAC--ATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATATACACTTTCACATTCATCACAT
26447857 AGAATCCTAA
Statistics
Matches: 210, Mismatches: 15, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
94 10 0.05
95 1 0.00
96 111 0.53
98 45 0.21
100 43 0.20
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26447795 original size:147 final size:143
Alignment explanation
Indices: 26447532--26447856 Score: 551
Period size: 147 Copynumber: 2.2 Consensus size: 143
26447522 CCCTTCGGGA
* * *
26447532 CTTATCACATTTATACACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
26447597 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCACCACA
26447662 TTGGCCATTCGGC
131 TTGGCCATTCGGC
*
26447675 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
* *
26447740 ACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAC
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCAC
26447805 CACATTGGCCATTCGGC
127 CACATTGGCCATTCGGC
26447822 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
26447857 AGAATCCTAA
Statistics
Matches: 170, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
143 51 0.30
147 119 0.70
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCACCACA
TTGGCCATTCGGC
Found at i:26451502 original size:56 final size:56
Alignment explanation
Indices: 26451435--26451554 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26451425 TATTAGTTTA
26451435 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
26451491 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26451547 TTGCCCAT
1 TTGCCCAT
26451555 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:26456804 original size:49 final size:51
Alignment explanation
Indices: 26456676--26456816 Score: 169
Period size: 51 Copynumber: 2.8 Consensus size: 51
26456666 TCTATTGTGA
*
26456676 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGT
* * * * * * *
26456727 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGT
* **
26456776 GGTCGCATGTGTAGTACTATGTGCAGGCTACTGTGCGTACC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
26456817 AGGCTACTAT
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
49 34 0.46
50 1 0.01
51 39 0.53
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGT
Found at i:26456821 original size:17 final size:17
Alignment explanation
Indices: 26456799--26456835 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
26456789 GTACTATGTG
*
26456799 CAGGCTACTGTGCGTAC
1 CAGGCTACTATGCGTAC
26456816 CAGGCTACTATGCGTAC
1 CAGGCTACTATGCGTAC
26456833 CAG
1 CAG
26456836 ATAGCTTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (17 bp):
CAGGCTACTATGCGTAC
Found at i:26460061 original size:40 final size:40
Alignment explanation
Indices: 26460025--26460117 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
26460015 CAGCTATTTG
*
26460025 TGGCACTTAGTGTGC-AGTTCGACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGA-TTCGACATAGCTTCGGCTATATA
* * * *
26460065 TGGTACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* *
26460105 CGACACTTAGTGT
1 TGGCACTTAGTGT
26460118 ACGAGATATC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 43 0.98
41 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
Found at i:26460150 original size:28 final size:28
Alignment explanation
Indices: 26460108--26460178 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
26460098 CTATGTACGA
* *
26460108 CACTTAGTGTACGAGATATCGAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTATGG
26460136 CACTTAGTGTGCGAGATATCGAGTATGG
1 CACTTAGTGTGCGAGATATCGAGTATGG
*
26460164 CACTTTGTGTGCGAG
1 CACTTAGTGTGCGAG
26460179 GCATTGAGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATCGAGTATGG
Found at i:26460187 original size:28 final size:28
Alignment explanation
Indices: 26460108--26460189 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
26460098 CTATGTACGA
* * *
26460108 CACTTAGTGTACGAGATATCGAGTGTGG
1 CACTTAGTGTGCGAGACATCGAGTATGG
*
26460136 CACTTAGTGTGCGAGATATCGAGTATGG
1 CACTTAGTGTGCGAGACATCGAGTATGG
* * *
26460164 CACTTTGTGTGCGAGGCATTGAGTAT
1 CACTTAGTGTGCGAGACATCGAGTAT
26460190 TCAATAGCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (28 bp):
CACTTAGTGTGCGAGACATCGAGTATGG
Found at i:26464432 original size:39 final size:39
Alignment explanation
Indices: 26464373--26464448 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
26464363 CGGGCGTGTG
* *
26464373 TGTAACACCCCTTACCCGTATCTATCGCC-GAACTAGGAT
1 TGTAACACCCCTAACCCGTATCCATCGCCAG-ACTAGGAT
*
26464412 TGTAGCACCCCTAACCCGTATCCATCGCCAGACTAGG
1 TGTAACACCCCTAACCCGTATCCATCGCCAGACTAGG
26464449 GTTAAGAGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 32 0.97
40 1 0.03
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.22
Consensus pattern (39 bp):
TGTAACACCCCTAACCCGTATCCATCGCCAGACTAGGAT
Found at i:26466585 original size:42 final size:43
Alignment explanation
Indices: 26466484--26466596 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
26466474 AGCTTGTACA
* * *
26466484 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGAAATCAAATATCG
* * * *
26466527 ATGCCACTATCCCAGACAGGGTTTTACATGAAATCATATA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATATCG
* *
26466569 ATGCCAATGTCTCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACAGGGTCTTACA
26466597 CGTAAATCTC
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 24 0.42
43 32 0.56
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGAAATCAAATATCG
Found at i:26469555 original size:18 final size:17
Alignment explanation
Indices: 26469534--26469588 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
26469524 ACAATTCTTT
26469534 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
26469552 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
*
26469569 TCTTCATCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
26469586 TCT
1 TCT
26469589 ATAGCCGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.29
18 18 0.58
19 3 0.10
ACGTcount: A:0.05, C:0.35, G:0.00, T:0.60
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:26470850 original size:28 final size:28
Alignment explanation
Indices: 26470813--26470956 Score: 211
Period size: 28 Copynumber: 5.2 Consensus size: 28
26470803 GGAGGAAATG
*
26470813 TTCTGGTGGCTCTGCCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
26470841 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
26470869 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
26470897 TCCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
26470925 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
26470951 TTCTGG
1 TTCTGG
26470957 CAGCCATGCT
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 5 0.05
27 7 0.07
28 93 0.89
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:26472367 original size:43 final size:42
Alignment explanation
Indices: 26472297--26472457 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
26472287 AGAAAGCTCG
26472297 TACAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACAG-GGTCTTACATGTAATCAAA
* * * *
26472339 TATCGATGCCACTGTCCCAAACAGGGTCTTACACT-AAATCAAA
1 TA-CAATGCCAATGTCCCAGACAGGGTCTTACA-TGTAATCAAA
* * *
26472382 TACAATGTCAATGTCCCAGACATGGTCTTACACGTAAATCATAA
1 TACAATGCCAATGTCCCAGACAGGGTCTTACATGT-AATCA-AA
* * *
26472426 GT-CGATGCGAATGTCTCAGAC-GTGGTCTTACA
1 -TACAATGCCAATGTCCCAGACAG-GGTCTTACA
26472458 CGAAAACACA
Statistics
Matches: 95, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.28
43 39 0.41
44 28 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAA
Found at i:26474061 original size:18 final size:18
Alignment explanation
Indices: 26474034--26474070 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26474024 AACCAGTTTG
26474034 ATACGCTCGAT-AATCTC
1 ATACGCTCGATGAATCTC
26474051 ATACGGCTCGATGAATCTC
1 ATAC-GCTCGATGAATCTC
26474070 A
1 A
26474071 GACTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 7 0.39
19 7 0.39
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (18 bp):
ATACGCTCGATGAATCTC
Found at i:26477111 original size:79 final size:81
Alignment explanation
Indices: 26477002--26477184 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
26476992 TACTCGTTCA
* *
26477002 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
26477065 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
26477082 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
26477145 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
26477161 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26477185 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:26477184 original size:40 final size:40
Alignment explanation
Indices: 26476981--26477184 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
26476971 CGGAATTTAA
** *
26476981 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26477021 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26477061 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26477100 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26477140 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26477180 CCGGA
1 CCGGA
26477185 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26484981 original size:46 final size:48
Alignment explanation
Indices: 26484930--26485060 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
26484920 ATGGTTGAGC
26484930 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
26484977 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
*
26485022 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26485061 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 28 0.40
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Done.