Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 86 of 253
Found at i:26488361 original size:14 final size:14
Alignment explanation
Indices: 26488328--26488376 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
26488318 ACTTTTTCCA
26488328 CTCTTTTTC-TTTT
1 CTCTTTTTCTTTTT
26488341 CATTCTTTTTCTTTTT
1 C--TCTTTTTCTTTTT
*
26488357 CTCTTTTTATTTTT
1 CTCTTTTTCTTTTT
26488371 CTCTTT
1 CTCTTT
26488377 CAATGGATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
13 1 0.03
14 18 0.56
15 8 0.25
16 5 0.16
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (14 bp):
CTCTTTTTCTTTTT
Found at i:26500241 original size:40 final size:40
Alignment explanation
Indices: 26500180--26500282 Score: 116
Period size: 40 Copynumber: 2.6 Consensus size: 40
26500170 TTGATGACAA
* * *
26500180 ATCGGCTATTTGTGGCTCTTAGTGTGCGATTCGACATAGC
1 ATCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGC
* * * * *
26500220 TTTGGCTATATATGGCACTTAGAGTGCGATTTGAGATAGC
1 ATCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGC
* *
26500260 ATCGGCTATGTACGGCACTTAGT
1 ATCGGCTATATATGGCACTTAGT
26500283 TTGTGAGATA
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
ATCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGC
Found at i:26500321 original size:28 final size:28
Alignment explanation
Indices: 26500290--26500344 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
26500280 AGTTTGTGAG
* *
26500290 ATATCGAGTGTGGCACTTAATGTGCGAA
1 ATATCAAGTATGGCACTTAATGTGCGAA
*
26500318 ATATCAAGTATGGCACTTAGTGTGCGA
1 ATATCAAGTATGGCACTTAATGTGCGA
26500345 GGCATTGAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (28 bp):
ATATCAAGTATGGCACTTAATGTGCGAA
Found at i:26503334 original size:20 final size:21
Alignment explanation
Indices: 26503298--26503336 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
26503288 TCAGAGGTCA
*
26503298 CACCGTGAGTGTTCTTATTGT
1 CACCGTGAGTCTTCTTATTGT
26503319 CACCGTGA-TCTTCTTATT
1 CACCGTGAGTCTTCTTATT
26503337 CGGTTAGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (21 bp):
CACCGTGAGTCTTCTTATTGT
Found at i:26505018 original size:53 final size:53
Alignment explanation
Indices: 26504955--26505058 Score: 208
Period size: 53 Copynumber: 2.0 Consensus size: 53
26504945 AATGATTTGG
26504955 GCATTGGTTAAACAAAAGGATTATATGAGTTTTATGTGGTGTATATATGTCTT
1 GCATTGGTTAAACAAAAGGATTATATGAGTTTTATGTGGTGTATATATGTCTT
26505008 GCATTGGTTAAACAAAAGGATTATATGAGTTTTATGTGGTGTATATATGTC
1 GCATTGGTTAAACAAAAGGATTATATGAGTTTTATGTGGTGTATATATGTC
26505059 CTACTTGGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (53 bp):
GCATTGGTTAAACAAAAGGATTATATGAGTTTTATGTGGTGTATATATGTCTT
Found at i:26507878 original size:46 final size:45
Alignment explanation
Indices: 26507764--26507935 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 45
26507754 CTACTGATGT
* * * *
26507764 TGATACCATGTCCCAGACAGGTCTTACACTAGCT-TGTATCTCGTGAGGC
1 TGATA-CATGTCCCAGACATGTCTTACACTAGCTCT-T-CCTC--AATGC
* *
26507813 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGCCTCAATGC
1 TGATACATGTCCCAGACATGTCTTACACTAGCTCTT-CCTCAATGC
* * ** *
26507859 TGATACATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGT
1 TGATACATGTCCCAGACATGTCTTACACTAGCTCTTCCT-CAAT-GC
*
26507905 TGATGCATGTCCCAGACATGTCTTACACTAG
1 TGATACATGTCCCAGACATGTCTTACACTAG
26507936 AACACAAATG
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 64 0.62
48 31 0.30
49 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
TGATACATGTCCCAGACATGTCTTACACTAGCTCTTCCTCAATGC
Found at i:26508752 original size:30 final size:30
Alignment explanation
Indices: 26508716--26508778 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
26508706 TTCAAGCTTC
26508716 CAAAACCCTCCTATGGCTGATATTTTTGGT
1 CAAAACCCTCCTATGGCTGATATTTTTGGT
*
26508746 CAAAACCCTCCTATGGTTGATATTTTTGGT
1 CAAAACCCTCCTATGGCTGATATTTTTGGT
26508776 CAA
1 CAA
26508779 GAAGAAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (30 bp):
CAAAACCCTCCTATGGCTGATATTTTTGGT
Found at i:26514181 original size:20 final size:21
Alignment explanation
Indices: 26514156--26514195 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26514146 CCCTTGAAAC
*
26514156 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
*
26514176 AGGGCAATACGCCCATGTGG
1 AGGGCAACACGCCCATGTGG
26514196 TCATTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:26515561 original size:48 final size:46
Alignment explanation
Indices: 26515490--26515610 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
26515480 TAACACCATA
* * *
26515490 TCCCAGACAGGTCTTACACTAGCT-T-GTATCTTGCAAGGTCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCTCG--CCTT--AAGGCCGATGCATG
*
26515538 TCCCAGACATGTCTTACACTAGCTCTCGCCTTAATGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCTCGCCTTAAGGCCGATGCATG
*
26515584 TCCCAGACATGTCTTACACTGGCTCTC
1 TCCCAGACATGTCTTACACTAGCTCTC
26515611 ATACTGTGGT
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
46 38 0.58
48 26 0.39
49 1 0.02
50 1 0.02
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAGCTCTCGCCTTAAGGCCGATGCATG
Found at i:26515626 original size:46 final size:45
Alignment explanation
Indices: 26515490--26515652 Score: 134
Period size: 46 Copynumber: 3.5 Consensus size: 45
26515480 TAACACCATA
* *
26515490 TCCCAGACAGGTCTTACACTAGCT-T-GTATCTTGCAAGGTCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCTCG-A-CTT---AGGCCGATGCATG
* *
26515538 TCCCAGACATGTCTTACACTAGCTCTCGCCTTAATGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCTCGACTT-AGGCCGATGCATG
* * ** *
26515584 TCCCAGACATGTCTTACACTGGCTCTCATACTGT-GGTTGATGCAAG
1 TCCCAGACATGTCTTACACTAGCTCTC-GACT-TAGGCCGATGCATG
* *
26515630 TCCCAAACATGTCTTATACTAGC
1 TCCCAGACATGTCTTACACTAGC
26515653 ACACAAATGA
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 66 0.68
47 2 0.02
48 27 0.28
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
TCCCAGACATGTCTTACACTAGCTCTCGACTTAGGCCGATGCATG
Found at i:26527378 original size:46 final size:45
Alignment explanation
Indices: 26527304--26527429 Score: 146
Period size: 46 Copynumber: 2.8 Consensus size: 45
26527294 GGTGGTATGT
* * *
26527304 GAGCCAATGTAAGGCATGTCTGGGACATGCATCAGCCACAT-CATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GCCA-ATACACGA
* * * *
26527350 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGCCAAT-ACACGA
*
26527396 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
26527430 GCCTCGGGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.01
45 3 0.04
46 65 0.94
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGCCAATACACGA
Found at i:26528944 original size:20 final size:21
Alignment explanation
Indices: 26528905--26528944 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26528895 GTCATAGTGG
*
26528905 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
26528926 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
26528945 GTTTCAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:26530367 original size:46 final size:46
Alignment explanation
Indices: 26530300--26530467 Score: 193
Period size: 46 Copynumber: 3.6 Consensus size: 46
26530290 GCCCATAAGC
* *
26530300 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCACAAGT
* *
26530346 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACATCTCAC----
1 GAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCATC-CACAAGT
* *
26530393 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCACAAGT
26530439 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
26530468 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 7, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 2 0.02
46 55 0.53
47 27 0.26
49 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCACAAGT
Found at i:26530414 original size:93 final size:93
Alignment explanation
Indices: 26530299--26530470 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
26530289 CGCCCATAAG
* *
26530299 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
26530364 ACGAGTTCGAATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* *
26530392 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
26530457 ACGAGTTCGGATGC
66 ACGAGTTCGAATGC
26530471 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:26530486 original size:46 final size:45
Alignment explanation
Indices: 26530292--26530479 Score: 145
Period size: 46 Copynumber: 4.1 Consensus size: 45
26530282 TGTAACCCGC
* * * * * *
26530292 CCAT-AAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAA
*
26530338 CCA-CAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGC-CTAGTTA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---A
* * * * *
26530385 -CATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATC-AAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAA
26530431 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
26530475 CCATC
1 CCATC
26530480 CTAGTGACAT
Statistics
Matches: 113, Mismatches: 16, Indels: 27
0.72 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 2 0.02
46 61 0.54
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
Found at i:26532576 original size:48 final size:48
Alignment explanation
Indices: 26532507--26532764 Score: 185
Period size: 48 Copynumber: 5.4 Consensus size: 48
26532497 TGAGTTTTCA
* * * *
26532507 ATGCCATATGCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCG
* * ** * * * * *
26532555 ATGCAATGTCCCAGACATGGTCTTACACAAGCTCTCGTCTCAATGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCG
** * ** *
26532603 ATGCCATGTCCCAAACATAATCTTACACTGGCTCTCATAAT-GTGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-ATCAAGGCCG
* * * * *
26532651 ACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCG
* * * * * * * ***
26532699 ATGCCATTTCCCATACATGGTCTTATATTGGCTCTCACAACATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCG
*
26532747 ATGCCATGTTCCAAACAT
1 ATGCCATGTCCCAAACAT
26532765 TGTAACAGCC
Statistics
Matches: 157, Mismatches: 51, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
47 2 0.01
48 154 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCG
Found at i:26532694 original size:96 final size:96
Alignment explanation
Indices: 26532505--26532735 Score: 248
Period size: 96 Copynumber: 2.4 Consensus size: 96
26532495 GGTGAGTTTT
* * * * *
26532505 CAATGCCATATGCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCAATGTCCCAGA
1 CAATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCCGACGCAATGTCCCAAA
* * * *
26532570 CATGGTCTTACACAAGCTCTCGTCTCAATGC
66 CATGGTCTTACACAAGCACACATATCAATGC
** * ** * * *
26532601 TGATGCCATGTCCCAAACATAATCTTACACTGGCTCTCATAAT-GTGGCTGACGCCATGTCCCAA
1 CAATGCCATATCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGGCCGACGCAATGTCCCAA
*
26532665 ACATGGTCTTACACTAGCACACATATCAATGC
65 ACATGGTCTTACACAAGCACACATATCAATGC
* * * *
26532697 CAATGCCATTTCCCATACATGGTCTTATATTGGCTCTCA
1 CAATGCCATATCCCAAACATGGTCTTACACTGGCTCTCA
26532736 CAACATCACC
Statistics
Matches: 108, Mismatches: 26, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
96 107 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (96 bp):
CAATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCCGACGCAATGTCCCAAA
CATGGTCTTACACAAGCACACATATCAATGC
Found at i:26532753 original size:96 final size:96
Alignment explanation
Indices: 26532552--26532764 Score: 219
Period size: 96 Copynumber: 2.2 Consensus size: 96
26532542 CATGTCGAGG
* * * * * * **
26532552 CCGATGCAATGTCCCAGACATGGTCTTACACAAGCTCTCGTCTCAATGCTGATGCCATGTCCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCAATGCCAATGCCATGTCCCAA
* ** **
26532617 ACATAATCTTACACTGGCTCTCATAATGTGG
66 ACATAATCTTACACTGGCTCTCACAACATCA
* * * * *
26532648 CTGACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAATGCCAATGCCATTTCCCAT
1 CCGATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCAATGCCAATGCCATGTCCCAA
** * *
26532713 ACATGGTCTTATATTGGCTCTCACAACATCA
66 ACATAATCTTACACTGGCTCTCACAACATCA
*
26532744 CCGATGCCATGTTCCAAACAT
1 CCGATGCCATGTCCCAAACAT
26532765 TGTAACAGCC
Statistics
Matches: 92, Mismatches: 25, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
96 92 1.00
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.27
Consensus pattern (96 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCAATGCCAATGCCATGTCCCAA
ACATAATCTTACACTGGCTCTCACAACATCA
Found at i:26536257 original size:22 final size:22
Alignment explanation
Indices: 26536186--26536257 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
26536176 GTATATATGA
26536186 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
26536208 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
26536233 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
26536255 GAT
1 GAT
26536258 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:26536301 original size:48 final size:47
Alignment explanation
Indices: 26536157--26536352 Score: 266
Period size: 47 Copynumber: 4.1 Consensus size: 47
26536147 TTAGGATTTT
** * *
26536157 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
26536204 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
26536251 ATGTGATGAATGTGAGCATACATATGGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATAT-ATGTGATAAGGCCGAATGGCCA
* * * * *
26536299 ATGTGGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGT-GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
26536347 ATGTGA
1 ATGTGA
26536353 AATTATATAT
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
47 67 0.51
48 47 0.36
49 17 0.13
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26536655 original size:37 final size:38
Alignment explanation
Indices: 26536556--26536663 Score: 168
Period size: 36 Copynumber: 2.9 Consensus size: 38
26536546 GGAAATATAT
26536556 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTATG
*
26536593 TCC-GGTAAGACCCGATGACTACGTGT-GAGATTTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTATG
* *
26536629 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
26536664 CGTCTGAGCT
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
35 4 0.06
36 30 0.46
37 24 0.37
38 7 0.11
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (38 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTATG
Found at i:26538392 original size:40 final size:40
Alignment explanation
Indices: 26537914--26538380 Score: 649
Period size: 40 Copynumber: 11.8 Consensus size: 40
26537904 AATTGAGAGT
*
26537914 GTGATATATCCAGGCTAAAGT-CCGAAGAGCATTCGTGCT-
1 GTGATATATCCGGGCT-AAGTCCCGAAGAGCATTCGTGCTA
*
26537953 GTGATATATCC-GGCTAAGT-CCGAATAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* * *
26537991 GTGATGTATCC-GACTAAGTCCCGGAA-AGCATTCGTGTTA
1 GTGATATATCCGGGCTAAGTCCC-GAAGAGCATTCGTGCTA
*
26538030 GTGATATATCCGGGCTCAGTCCCGAAGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* *
26538070 GTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* *
26538110 GTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGGTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
26538150 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* *
26538190 GTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* *
26538230 GTGATATATCCGGGCTAAGTCCCGAAGAGTATTCCTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* * * *
26538270 GTGATGTATCCGGACAAAGTCCCGAAGGGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* ** *
26538310 GTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
* * *
26538350 GTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCA
26538381 ATCATGCTGG
Statistics
Matches: 383, Mismatches: 40, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
37 21 0.05
38 21 0.05
39 38 0.10
40 303 0.79
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
Found at i:26542588 original size:47 final size:47
Alignment explanation
Indices: 26542534--26542727 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
26542524 TTAGGATTTT
* ** * *
26542534 ATGTGATGAATGTTAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
26542581 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26542628 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
26542675 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
26542722 ATGTGA
1 ATGTGA
26542728 AATTTATATA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26542634 original size:22 final size:22
Alignment explanation
Indices: 26542563--26542634 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
26542553 GTATATATGA
26542563 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
26542585 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
26542610 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
26542632 GAT
1 GAT
26542635 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:26542683 original size:25 final size:25
Alignment explanation
Indices: 26542608--26542683 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
26542598 ATGCATATAT
26542608 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
26542633 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
26542655 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
26542680 GTGA
1 GTGA
26542684 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:26543040 original size:37 final size:37
Alignment explanation
Indices: 26542936--26543040 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
26542926 ATATATTCTA
*
26542936 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
26542973 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
* * *
26543010 GGTAAGACTCGATAACTTCGTGTGGAGATTT
1 GGTAAGACCCGATGACTACGTGTGGAGATTT
26543041 CGTCTGAGCT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
Found at i:26554582 original size:48 final size:47
Alignment explanation
Indices: 26554508--26554740 Score: 247
Period size: 48 Copynumber: 4.9 Consensus size: 47
26554498 AGAGTGAGTT
* * *
26554508 GCCGATGCCATGTTCCAAACATGGTCTTACCCTGGCTCAT-ATGTCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAT-TCAAG
* * * *
26554556 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCAAG
* * *
26554604 CCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCA-T-AATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCAA-G
* * * * *
26554650 TGCCTGATGTCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAT
1 -GCC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCAAG
26554700 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
26554741 CAACATCATC
Statistics
Matches: 153, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 3 0.02
48 141 0.92
49 3 0.02
50 1 0.01
51 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCAAG
Found at i:26554678 original size:96 final size:94
Alignment explanation
Indices: 26554509--26554740 Score: 290
Period size: 96 Copynumber: 2.4 Consensus size: 94
26554499 GAGTGAGTTG
* *
26554509 CCGATGCCATGTTCCAAACATGGTCTTACCCTGG--CTCATATGTCAAGGCCGATGCCATGTCCT
1 CCGATGCCATG-TCCAAACATGGTCTTACACTGGCTCTCATATGT--A-GCCGATGCCATGTCCC
* * *
26554572 AGACACGGTCTTACACTAGCTCTCATCTCAATC
62 AGACACGGTCTTACACTAGCGCACATATCAATC
*
26554605 CCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAATGT-GCCTGATGTCATGTCCCA
1 CCGATGCCATGTCC-AAACATGGTCTTACACTGGCTCTCAT-ATGTAGCC-GATGCCATGTCCCA
* *
26554669 GACATGGTCTTACACTAGCGCACATATCAATG
63 GACACGGTCTTACACTAGCGCACATATCAATC
*
26554701 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 CCGATGCCATGT-CCAAACATGGTCTTACACTGGCTCTCA
26554741 CAACATCATC
Statistics
Matches: 121, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
95 6 0.05
96 104 0.86
97 2 0.02
98 5 0.04
99 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (94 bp):
CCGATGCCATGTCCAAACATGGTCTTACACTGGCTCTCATATGTAGCCGATGCCATGTCCCAGAC
ACGGTCTTACACTAGCGCACATATCAATC
Found at i:26554756 original size:48 final size:47
Alignment explanation
Indices: 26554558--26554827 Score: 162
Period size: 48 Copynumber: 5.7 Consensus size: 47
26554548 ATGTCAAGGC
* * * * *
26554558 CGATGCCATGTCCTAGACACGGTCTTACACTAGCTCTCATCTCAATC-C
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CAC-ATCAT
* * * *
26554606 CGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATA-AT-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACACATCAT
* * * *
26554651 GCCTGATGTCATGTCCCAGACATGGTCTTACACTAG--CGCACATATCAAT
1 --C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACACATC-AT
26554700 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCAT
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-ACATCAT
* * * * * **
26554750 CAATGCCATAT-TC---CATGGTCTTACACTGGCTCACATATCATGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACA-CATCAT
* * ** *
26554794 CGATGCCATGTTCCAAATGTGGTATTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
26554828 ACACATATCA
Statistics
Matches: 177, Mismatches: 30, Indels: 30
0.75 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 34 0.19
45 3 0.02
46 4 0.02
47 4 0.02
48 117 0.66
49 4 0.02
50 6 0.03
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACACATCAT
Found at i:26554800 original size:44 final size:44
Alignment explanation
Indices: 26554719--26554837 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 44
26554709 ATGTCCCAGA
* * *
26554719 CATGGTCTTACACTGGCTCTCACAACATCATCAATGCCATATTC
1 CATGGTCTTACACTGGCTCACATATCATCATCAATGCCATATTC
** * *
26554763 CATGGTCTTACACTGGCTCACATATCATGGTCGATGCCATGTTC
1 CATGGTCTTACACTGGCTCACATATCATCATCAATGCCATATTC
* *
26554807 CAAATGTGGTATTACACTGGCACACATATCA
1 C--A--TGGTCTTACACTGGCTCACATATCA
26554838 CCCAAATGTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 38 0.61
46 1 0.02
48 23 0.37
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (44 bp):
CATGGTCTTACACTGGCTCACATATCATCATCAATGCCATATTC
Found at i:26562185 original size:40 final size:40
Alignment explanation
Indices: 26562088--26562186 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 40
26562078 TAAGAGGTGC
* ** * **
26562088 ACAAGCCACCAGTATTGCAGACATGTTGCTAGTATTGTGG
1 ACAAGCCACCAGAATTGCAGACATACTACTAGTATTGCAG
* * *
26562128 ACAAGCGA-CAAATATTGCAGATATACTACTAGTATTGCAG
1 ACAAGCCACCAGA-ATTGCAGACATACTACTAGTATTGCAG
26562168 ACAAGCCACCAGAATTGCA
1 ACAAGCCACCAGAATTGCA
26562187 AACAAGCTGC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.89
41 3 0.07
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (40 bp):
ACAAGCCACCAGAATTGCAGACATACTACTAGTATTGCAG
Found at i:26562709 original size:17 final size:17
Alignment explanation
Indices: 26562687--26562744 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
26562677 AATCAAAGTT
26562687 TTAAATGAAAATTATTA
1 TTAAATGAAAATTATTA
*
26562704 TTAAATAATCAAAGTT-TTA
1 TTAAATGA--AAA-TTATTA
*
26562723 -AAAATGAAAATTATTA
1 TTAAATGAAAATTATTA
26562739 TTAAAT
1 TTAAAT
26562745 AATCAAAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
15 2 0.06
16 6 0.19
17 11 0.34
18 5 0.16
19 6 0.19
20 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (17 bp):
TTAAATGAAAATTATTA
Found at i:26562728 original size:35 final size:35
Alignment explanation
Indices: 26562675--26562780 Score: 180
Period size: 35 Copynumber: 3.1 Consensus size: 35
26562665 AGTCATAAGT
26562675 ATAATCAAAGTTTT--AAATGAAAATTATTATTAA
1 ATAATCAAAGTTTTAAAAATGAAAATTATTATTAA
26562708 ATAATCAAAGTTTTAAAAATGAAAATTATTATTAA
1 ATAATCAAAGTTTTAAAAATGAAAATTATTATTAA
* *
26562743 ATAATCAAAGTTTTAAAAATAAAAACTATTATTAA
1 ATAATCAAAGTTTTAAAAATGAAAATTATTATTAA
26562778 ATA
1 ATA
26562781 TACTCTTAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
33 14 0.20
35 55 0.80
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.37
Consensus pattern (35 bp):
ATAATCAAAGTTTTAAAAATGAAAATTATTATTAA
Found at i:26562764 original size:18 final size:18
Alignment explanation
Indices: 26562706--26562764 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
26562696 AATTATTATT
26562706 AAATAATCAAAGTTTTAA
1 AAATAATCAAAGTTTTAA
* *
26562724 AAATGA--AAA-TTATTATT
1 AAATAATCAAAGTT-TTA-A
26562741 AAATAATCAAAGTTTTAA
1 AAATAATCAAAGTTTTAA
26562759 AAATAA
1 AAATAA
26562765 AAACTATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
15 2 0.06
16 6 0.19
17 5 0.16
18 11 0.34
19 6 0.19
20 2 0.06
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
AAATAATCAAAGTTTTAA
Found at i:26565979 original size:26 final size:26
Alignment explanation
Indices: 26565946--26566008 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
26565936 AACATATTTT
26565946 ATCAAAATTTTACCAAG-GGTAAAATC
1 ATCAAAATTTTACC-AGTGGTAAAATC
*
26565972 ATCAAAATTTTACCAGTGGTAAATTC
1 ATCAAAATTTTACCAGTGGTAAAATC
* *
26565998 GTTAAAATTTT
1 ATCAAAATTTT
26566009 GCTGGGAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 2 0.06
26 31 0.94
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (26 bp):
ATCAAAATTTTACCAGTGGTAAAATC
Found at i:26566635 original size:25 final size:25
Alignment explanation
Indices: 26566589--26566647 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
26566579 TGGTTGAAAT
*
26566589 CCGAAAACAACGAACGTTCGCTAAG
1 CCGAAAACAACGAACGTCCGCTAAG
* * *
26566614 TCGAAAACAATGAAGGTCCGCTAAG
1 CCGAAAACAACGAACGTCCGCTAAG
*
26566639 CCAAAAACA
1 CCGAAAACA
26566648 CAAGTACAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.44, C:0.25, G:0.19, T:0.12
Consensus pattern (25 bp):
CCGAAAACAACGAACGTCCGCTAAG
Found at i:26572155 original size:37 final size:37
Alignment explanation
Indices: 26572105--26572182 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
26572095 TATCTAAGAG
26572105 TAGATTTGGCATAATTAAGCGAAGTTGATCGAACGCC
1 TAGATTTGGCATAATTAAGCGAAGTTGATCGAACGCC
*
26572142 TAGATTTGGCATAATTAAGCGGAGTTGATCGAACGCC
1 TAGATTTGGCATAATTAAGCGAAGTTGATCGAACGCC
26572179 TAGA
1 TAGA
26572183 AATAGGGTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (37 bp):
TAGATTTGGCATAATTAAGCGAAGTTGATCGAACGCC
Found at i:26574643 original size:39 final size:40
Alignment explanation
Indices: 26574598--26574765 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
26574588 CGGGGTTTAG
* * *
26574598 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
26574637 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
26574677 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
26574717 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
26574758 CCGGATAT
1 CCGGATAT
26574766 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:26574748 original size:41 final size:40
Alignment explanation
Indices: 26574621--26574765 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26574611 CTCGCACAAG
* * * * *
26574621 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
26574661 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
26574701 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
26574742 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
26574766 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:26575973 original size:17 final size:17
Alignment explanation
Indices: 26575951--26575986 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26575941 CAAGAACTCC
26575951 TTCCTCCTTCCTTAGAA
1 TTCCTCCTTCCTTAGAA
26575968 TTCCTCCTTCCTTAGAA
1 TTCCTCCTTCCTTAGAA
26575985 TT
1 TT
26575987 TTCGGCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.33, G:0.06, T:0.44
Consensus pattern (17 bp):
TTCCTCCTTCCTTAGAA
Found at i:26582674 original size:39 final size:40
Alignment explanation
Indices: 26582629--26582796 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
26582619 CGGGGTTTAG
* * *
26582629 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
26582668 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
26582708 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
26582748 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
26582789 CCGGATAT
1 CCGGATAT
26582797 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:26582779 original size:41 final size:40
Alignment explanation
Indices: 26582652--26582796 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26582642 CTCGCACAAG
* * * * *
26582652 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
26582692 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
26582732 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
26582773 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
26582797 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:26584026 original size:38 final size:38
Alignment explanation
Indices: 26583984--26584059 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
26583974 CAAGAACTCC
26583984 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
26584022 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
26584060 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:26589293 original size:6 final size:6
Alignment explanation
Indices: 26589279--26589335 Score: 96
Period size: 6 Copynumber: 9.5 Consensus size: 6
26589269 TCCTCCTATC
*
26589279 TTTTAA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
26589327 TTTTCA TTT
1 TTTTTA TTT
26589336 CAATTTTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:26589341 original size:18 final size:18
Alignment explanation
Indices: 26589279--26589342 Score: 92
Period size: 18 Copynumber: 3.6 Consensus size: 18
26589269 TCCTCCTATC
26589279 TTTTAATTTTTATTTTTA
1 TTTTAATTTTTATTTTTA
*
26589297 TTTTTATTTTTATTTTTA
1 TTTTAATTTTTATTTTTA
* *
26589315 TTTTTATTTTTATTTTCA
1 TTTTAATTTTTATTTTTA
*
26589333 TTTCAATTTT
1 TTTTAATTTT
26589343 ATTATTTTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTAATTTTTATTTTTA
Found at i:26601365 original size:12 final size:11
Alignment explanation
Indices: 26601350--26601394 Score: 63
Period size: 11 Copynumber: 3.8 Consensus size: 11
26601340 AAAAATTTCG
26601350 AAAAAATAAATT
1 AAAAAA-AAATT
26601362 AAAAAAAAATT
1 AAAAAAAAATT
26601373 AAAAAAAGAATT
1 AAAAAAA-AATT
26601385 GAAAAAAAAA
1 -AAAAAAAAA
26601395 GTGATTTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 12 0.39
12 12 0.39
13 7 0.23
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (11 bp):
AAAAAAAAATT
Found at i:26607255 original size:13 final size:13
Alignment explanation
Indices: 26607237--26607265 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26607227 TTTAGTTTAA
26607237 TTAGTTAATTAGT
1 TTAGTTAATTAGT
26607250 TTAGTTAATTAGT
1 TTAGTTAATTAGT
26607263 TTA
1 TTA
26607266 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:26614966 original size:46 final size:47
Alignment explanation
Indices: 26614852--26614975 Score: 153
Period size: 46 Copynumber: 2.6 Consensus size: 47
26614842 ATGGGTTATT
*
26614852 GTAAGCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCATTGAAAA
1 GTAAGCTAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCATCGAAAA
* * * * *
26614900 G-AGTGCTAGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGAC
1 GTA-AGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAAAA
*
26614946 GTAAGCCAGTGTAAGACATGTCTGGGACAT
1 GTAAGCTAGTGTAAGACATGTCTGGGACAT
26614976 TTATCGGCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 37 0.56
47 15 0.23
48 14 0.21
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (47 bp):
GTAAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAAAA
Found at i:26617111 original size:40 final size:40
Alignment explanation
Indices: 26617056--26617145 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
26617046 TATTAAATAC
26617056 CTTACTATTATACCTATGGACACATCTCGTACTTACTAGT
1 CTTACTATTATACCTATGGACACATCTCGTACTTACTAGT
* ** * *
26617096 CTTACTGTTATACCTATGGACATGTCTTGTCCTTACTAGT
1 CTTACTATTATACCTATGGACACATCTCGTACTTACTAGT
*
26617136 CTTATTATTA
1 CTTACTATTA
26617146 GCATTTAGGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (40 bp):
CTTACTATTATACCTATGGACACATCTCGTACTTACTAGT
Found at i:26617564 original size:26 final size:26
Alignment explanation
Indices: 26617482--26617564 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 26
26617472 AGGGCCATTC
* * *
26617482 TTTTAGAAAATGCCACGAAGGCTTCTA
1 TTTTAG-ATATGCCACAAAGGCTTCCA
* *
26617509 TTTCAAATATGCCACAAAGGCTTCCA
1 TTTTAGATATGCCACAAAGGCTTCCA
* *
26617535 TTTTAGATATGCCACAAATGCTTTCA
1 TTTTAGATATGCCACAAAGGCTTCCA
26617561 TTTT
1 TTTT
26617565 CTCGCATGTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 43 0.91
27 4 0.09
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (26 bp):
TTTTAGATATGCCACAAAGGCTTCCA
Found at i:26620043 original size:48 final size:48
Alignment explanation
Indices: 26619972--26620242 Score: 285
Period size: 48 Copynumber: 5.6 Consensus size: 48
26619962 GTGAATTACT
* * * * * *
26619972 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTAGAGGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTAGAGGCC
* *
26620020 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCA-ATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-AGAGGCC
* * * * * *
26620068 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTAGAGGCC
* **
26620116 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCA-ATACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-AGAGGCC
* * * * * * * *
26620164 GATGCCATGTTCCATACCTGGTCCTACACTAGCTCTCGTATCGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTAGAGGCC
26620212 GATGCCATGTCCCAGACATGGTCTTACACTA
1 GATGCCATGTCCCAGACATGGTCTTACACTA
26620243 ACAGACATAT
Statistics
Matches: 181, Mismatches: 38, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
48 180 0.99
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTAGAGGCC
Found at i:26620136 original size:96 final size:96
Alignment explanation
Indices: 26619972--26620242 Score: 425
Period size: 96 Copynumber: 2.8 Consensus size: 96
26619962 GTGAATTACT
* *
26619972 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTAGAGGCAGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
**
26620037 ATGGTCTTACACTAGCTCTCATCTCAATGTC
66 ATGGTCTTACACTAGCTCTCATCTCAATACC
26620068 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
*
26620133 ATGGTCTTACACTAGCTCTCGTCTCAATACC
66 ATGGTCTTACACTAGCTCTCATCTCAATACC
* * * * * * * *
26620164 GATGCCATGTTCCATACCTGGTCCTACACTAGCTCTCGTATCGTGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
26620229 ATGGTCTTACACTA
66 ATGGTCTTACACTA
26620243 ACAGACATAT
Statistics
Matches: 162, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 162 1.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (96 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCATCTCAATACC
Found at i:26623584 original size:67 final size:68
Alignment explanation
Indices: 26623495--26623653 Score: 203
Period size: 69 Copynumber: 2.3 Consensus size: 68
26623485 AAATGTCAAT
* * * * * *
26623495 TTCTTTACTATATTCATTAAAAAGTTA-ATTAATCTCACATTAATTAGAGAATACTCTCATAGCT
1 TTCTTCACTATTTTCATTAAAAAGTTATATTAATCCCACATCAACTAGAGAATACTCTCATAACT
26623559 AAC
66 AAC
* * * *
26623562 TTCTTCACTATTTTCGTTAAAAAATTTATTTTAATCCCACATCGACTAGAGAATACTCTCATAAC
1 TTCTTCACTATTTTCATT-AAAAAGTTATATTAATCCCACATCAACTAGAGAATACTCTCATAAC
*
26623627 TCAC
65 TAAC
26623631 TTCTTCACTATTTTCATTAAAAA
1 TTCTTCACTATTTTCATTAAAAA
26623654 TATTTTTAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 15 0.19
68 13 0.17
69 50 0.64
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (68 bp):
TTCTTCACTATTTTCATTAAAAAGTTATATTAATCCCACATCAACTAGAGAATACTCTCATAACT
AAC
Found at i:26623899 original size:94 final size:94
Alignment explanation
Indices: 26623667--26623904 Score: 311
Period size: 94 Copynumber: 2.6 Consensus size: 94
26623657 TTTTAATCCC
* *
26623667 TTAAAAAGTTAATTTTAATCTCACAATGGCTAGAGAATACTCTCAT-GC-CACACTTATCTTATA
1 TTAAAAAGTTAATTTTAATCTCACAATGACTAGAGAATACTCTCATAGCTCACACTTACCTTATA
*
26623730 AATAAATGTCAATTTCTTCATTATTTTTA
66 AATAAATGTCAATTTCTTCATTAGTTTTA
* * * * ** * *
26623759 TTAAAAAGTTCATTTTAATCTCAGATTGACTAAAGAGCACTCTCATATCTCACATTTACCTTATA
1 TTAAAAAGTTAATTTTAATCTCACAATGACTAGAGAATACTCTCATAGCTCACACTTACCTTATA
*
26623824 AATAAGTGTCAATTTCTTCATTAGTTTTA
66 AATAAATGTCAATTTCTTCATTAGTTTTA
* * *
26623853 TTAAAAACTTAATTTTAATC-CTACACTAACTAGAGAATACTCTCATAGCTCA
1 TTAAAAAGTTAATTTTAATCTC-ACAATGACTAGAGAATACTCTCATAGCTCA
26623905 ACTATTCACT
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
92 39 0.32
93 2 0.02
94 81 0.66
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.39
Consensus pattern (94 bp):
TTAAAAAGTTAATTTTAATCTCACAATGACTAGAGAATACTCTCATAGCTCACACTTACCTTATA
AATAAATGTCAATTTCTTCATTAGTTTTA
Found at i:26624533 original size:65 final size:64
Alignment explanation
Indices: 26624354--26624542 Score: 202
Period size: 67 Copynumber: 2.8 Consensus size: 64
26624344 CTGTCAATTT
* *
26624354 CTTTACAATTTTCATTAAAAAAATTAATTTTAATCTCGTATTGAA-TAGAGAATACTCATATAAC
1 CTTTTCAATTTTCA-T-AAAAAA-TAATTTTAATCTCGCATT-AACTAGAGAATACTCATATAAC
26624418 TCA
62 TCA
* * *
26624421 CTTTTCACTATTTTCAATAACAAATAATTTTAATCTTGCATTAACTAGAGAATACTTC-TATAGC
1 CTTTTCA--ATTTTC-ATAAAAAATAATTTTAATCTCGCATTAACTAGAGAATAC-TCATATAAC
26624485 TCA
62 TCA
* * * *
26624488 CTTATTCAATTTTCATAAAAAATAATTTTAATCCCACATTTACTAGAGAACACTC
1 CTT-TTCAATTTTCATAAAAAATAATTTTAATCTCGCATTAACTAGAGAATACTC
26624543 TCATGCTCAC
Statistics
Matches: 105, Mismatches: 11, Indels: 15
0.80 0.08 0.11
Matches are distributed among these distances:
64 2 0.02
65 33 0.31
66 8 0.08
67 43 0.41
68 11 0.10
69 7 0.07
70 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (64 bp):
CTTTTCAATTTTCATAAAAAATAATTTTAATCTCGCATTAACTAGAGAATACTCATATAACTCA
Found at i:26631613 original size:55 final size:55
Alignment explanation
Indices: 26631486--26631615 Score: 134
Period size: 55 Copynumber: 2.4 Consensus size: 55
26631476 CATGTCCTTA
* * * * * **
26631486 ACCCGTGTGCACCACTAACTTCAACACACGGCCATGGCACACGCTTGTGTGACCT
1 ACCCGTGTACAACACTGACTTTAAGACACGGCCATGGCACACGCCAGTGTGACCT
** * * * *
26631541 GTCCGTGTACGATACTGACTTTAAGACACGGCCATGGCACATGCCAGTGTGGCCT
1 ACCCGTGTACAACACTGACTTTAAGACACGGCCATGGCACACGCCAGTGTGACCT
*
26631596 ACCCGTGTATAACACTGACT
1 ACCCGTGTACAACACTGACT
26631616 AAAAAGTTTA
Statistics
Matches: 57, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (55 bp):
ACCCGTGTACAACACTGACTTTAAGACACGGCCATGGCACACGCCAGTGTGACCT
Found at i:26632588 original size:47 final size:46
Alignment explanation
Indices: 26632373--26632691 Score: 220
Period size: 47 Copynumber: 6.8 Consensus size: 46
26632363 GGGATAAGTT
26632373 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG-ATAGCATCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCAT--CATCATCGAG
** * * * * * *
26632422 GTTGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATGAAC-AT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATC--ATCATCGAG
** * * *
26632472 GTTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAAC-TCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATC-GAG
* * *
26632516 GCCAATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCATCGAG
* * *
26632563 GCCGATGCATGTCCCAAACATGTCTTACACTGGCACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCATCGAG
* * * * *
26632609 GCCGATGCCATGTCCCAAACATGGTCTTATACTGACACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCA-TCATCATCGAG
* *
26632657 GCTGATGCATGACCCAGACATGTCTTACACTGGCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCA
26632692 CACAAGAAAT
Statistics
Matches: 218, Mismatches: 38, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 29 0.13
45 2 0.01
46 28 0.13
47 63 0.29
48 35 0.16
49 47 0.22
50 8 0.04
51 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCGAG
Found at i:26632678 original size:94 final size:93
Alignment explanation
Indices: 26632425--26632692 Score: 262
Period size: 94 Copynumber: 2.9 Consensus size: 93
26632415 CATCGAGGTT
* ** *
26632425 GATGCCATGTCCCAGACATGGTCTTATACT-AGCTCTCGTATGAACAT-GTTGATGCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTATACTGA-CACTC--AT-AATGTGGCTGATGCATGTCCCA
*
26632488 GACATGTCTTACACTAGCA-CAACTCTTAGCC
62 GACATGTCTTACACTGGCACCAACTCTTAGCC
* * * * * * * * *
26632519 AATG-CGTGTCCCAGACA-CGTCTTACACTGGCTA-TCATCATCGAGGCCGATGCATGTCCCAAA
1 GATGCCATGTCCCAGACATGGTCTTATACTGAC-ACTCATAAT-GTGGCTGATGCATGTCCCAGA
*
26632581 CATGTCTTACACTGGCACTCATCTC-TACGCC
64 CATGTCTTACACTGGCAC-CAACTCTTA-GCC
* *
26632612 GATGCCATGTCCCAAACATGGTCTTATACTGACACTCATAATGTGGCTGATGCATGACCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTATACTGACACTCATAATGTGGCTGATGCATGTCCCAGACA
26632677 TGTCTTACACTGGCAC
66 TGTCTTACACTGGCAC
26632693 ACAAGAAATC
Statistics
Matches: 138, Mismatches: 26, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
89 1 0.01
90 2 0.01
91 31 0.22
92 14 0.10
93 23 0.17
94 50 0.36
95 17 0.12
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTATACTGACACTCATAATGTGGCTGATGCATGTCCCAGACA
TGTCTTACACTGGCACCAACTCTTAGCC
Found at i:26636776 original size:27 final size:26
Alignment explanation
Indices: 26636738--26636789 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
26636728 CTCGCTGCAA
*
26636738 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
26636765 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
26636790 GCAGTCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:26647208 original size:44 final size:43
Alignment explanation
Indices: 26647142--26647227 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 43
26647132 TCATGGATAG
*
26647142 AAAAAGTACCAGTATAACATCAGGAGACTCTGCTTCATCGCAA
1 AAAAAGTACCAGTATAACATCAGGAGACTCTGCCTCATCGCAA
26647185 AAAAAGTACCCA-TGATAACATCAGGAGACTCTGCCTCATCGCA
1 AAAAAGTA-CCAGT-ATAACATCAGGAGACTCTGCCTCATCGCA
26647228 GGCACGAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 9 0.22
44 31 0.77
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.20
Consensus pattern (43 bp):
AAAAAGTACCAGTATAACATCAGGAGACTCTGCCTCATCGCAA
Found at i:26649021 original size:55 final size:55
Alignment explanation
Indices: 26648903--26649023 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
26648893 AGCCCGTGCG
* * *
26648903 CAACACTGACTTCAACACACGGCCACAGTACACGCCCGTGTGACCTGCCCGTGTA
1 CAACACTGACTTCAACACACGGCCACAGCACACACCCGTGTGACCTACCCGTGTA
** * * * ** * *
26648958 TGATACTGACTTTAAGACACGGCCATGGCACATACCCGTGTGGCCTACCCGTGTA
1 CAACACTGACTTCAACACACGGCCACAGCACACACCCGTGTGACCTACCCGTGTA
26649013 CAACACTGACT
1 CAACACTGACT
26649024 AAAAAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.26, C:0.34, G:0.21, T:0.20
Consensus pattern (55 bp):
CAACACTGACTTCAACACACGGCCACAGCACACACCCGTGTGACCTACCCGTGTA
Found at i:26650915 original size:40 final size:40
Alignment explanation
Indices: 26650858--26651127 Score: 409
Period size: 40 Copynumber: 6.8 Consensus size: 40
26650848 GATGATAACG
*
26650858 GGGCTACGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
26650898 GGGCTAAGTCCCAAAGGCATTTGTACGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
26650938 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTGC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* **
26650978 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
26651018 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
26651058 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
26651098 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26651128 AGCTATATCC
Statistics
Matches: 210, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 209 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:26659013 original size:39 final size:39
Alignment explanation
Indices: 26658894--26659185 Score: 391
Period size: 39 Copynumber: 7.4 Consensus size: 39
26658884 GATGATAACG
26658894 GGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATTCC
*
26658933 GGGCTAAGTCCCAAAGGCATTTGTGACGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACT-ATTCC
26658974 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATTCC
26659013 GGGCTAGAGTCCCGAAGGCATTTGTGCGAGTTACTATT-C
1 GGGCTA-AGTCCCGAAGGCATTTGTGCGAGTTACTATTCC
26659052 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCC
* **
26659091 AGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCC
*
26659131 -GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-TCC
* *
26659170 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
26659186 TACTTGGTTT
Statistics
Matches: 236, Mismatches: 9, Indels: 16
0.90 0.03 0.06
Matches are distributed among these distances:
37 26 0.11
38 6 0.03
39 90 0.38
40 66 0.28
41 48 0.20
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCC
Found at i:26727059 original size:29 final size:29
Alignment explanation
Indices: 26727024--26727097 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
26727014 GTTGTGAGAT
* *
26727024 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
26727053 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
26727082 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26727098 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:26736796 original size:20 final size:20
Alignment explanation
Indices: 26736759--26736797 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26736749 TAGATGCATA
*
26736759 ACAGAGGCACCAAAGTGCAG
1 ACAGAGGCACAAAAGTGCAG
26736779 ACAGAGGCA-AAAATGTGCA
1 ACAGAGGCACAAAA-GTGCA
26736798 AGCAAAGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.44, C:0.21, G:0.28, T:0.08
Consensus pattern (20 bp):
ACAGAGGCACAAAAGTGCAG
Found at i:26736826 original size:20 final size:20
Alignment explanation
Indices: 26736803--26736879 Score: 59
Period size: 20 Copynumber: 3.9 Consensus size: 20
26736793 GTGCAAGCAA
26736803 AGGCACTGAAATGCAAACAG
1 AGGCACTGAAATGCAAACAG
* * *
26736823 AGGCGC-G-AATGTATGATCAG
1 AGGCACTGAAATGCA--AACAG
* *
26736843 AGGCATTGAAGTGCAAACAG
1 AGGCACTGAAATGCAAACAG
* *
26736863 AGGCACCGAAGTGCAAA
1 AGGCACTGAAATGCAAA
26736880 TCTCGTACAA
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
18 5 0.12
19 1 0.02
20 32 0.74
21 1 0.02
22 4 0.09
ACGTcount: A:0.39, C:0.18, G:0.30, T:0.13
Consensus pattern (20 bp):
AGGCACTGAAATGCAAACAG
Found at i:26736834 original size:40 final size:40
Alignment explanation
Indices: 26736790--26736866 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
26736780 CAGAGGCAAA
*
26736790 AATGTGCAAGCAAAGGCACTGAAATGCAAACAGAGGCGCG
1 AATGTACAAGCAAAGGCACTGAAATGCAAACAGAGGCGCG
** * * * *
26736830 AATGTATGATCAGAGGCATTGAAGTGCAAACAGAGGC
1 AATGTACAAGCAAAGGCACTGAAATGCAAACAGAGGC
26736867 ACCGAAGTGC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.39, C:0.17, G:0.30, T:0.14
Consensus pattern (40 bp):
AATGTACAAGCAAAGGCACTGAAATGCAAACAGAGGCGCG
Found at i:26741227 original size:27 final size:27
Alignment explanation
Indices: 26741187--26741298 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
26741177 AGGAAGCGTC
*
26741187 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTAAT
* **
26741214 CTGGTGGCTCTGCCACATATT-TTTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTAAT
* *
26741241 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCT-AAT
* * * *
26741269 CTAGTGACTCTGTCAC-ATTATCTATT
1 CTGGTGGCTCTGCCACAATTATCTAAT
26741295 CTGG
1 CTGG
26741299 CAGCCATATA
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 7 0.10
27 44 0.65
28 17 0.25
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTAAT
Found at i:26741297 original size:54 final size:54
Alignment explanation
Indices: 26741187--26741298 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
26741177 AGGAAGCGTC
* * * * *
26741187 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTTTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTATT
* * * *
26741241 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCT-AATCTAGTGACTCTGCCACATATATCTATT
26741295 CTGG
1 CTGG
26741299 CAGCCATATA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTATT
Found at i:26746613 original size:22 final size:22
Alignment explanation
Indices: 26746597--26746642 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26746587 ATTAATTTTA
26746597 ATGATATGCATATTTAAGTAAC
1 ATGATATGCATATTTAAGTAAC
26746619 ATGATATGCATATTTAAGTAAC
1 ATGATATGCATATTTAAGTAAC
26746641 AT
1 AT
26746643 AAATCTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (22 bp):
ATGATATGCATATTTAAGTAAC
Found at i:26748960 original size:25 final size:25
Alignment explanation
Indices: 26748931--26748999 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
26748921 TGAGTTGTAG
26748931 ATCGGTATGCTCTCACGAGCTATAA
1 ATCGGTATGCTCTCACGAGCTATAA
* *
26748956 GTCGGTATGCTCTCATGAGCTATAA
1 ATCGGTATGCTCTCACGAGCTATAA
*
26748981 ATCAGTATGCTCTCACGAG
1 ATCGGTATGCTCTCACGAG
26749000 TGGTCGAGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (25 bp):
ATCGGTATGCTCTCACGAGCTATAA
Found at i:26750281 original size:38 final size:38
Alignment explanation
Indices: 26750238--26750313 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
26750228 TTCATCCTTT
26750238 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
26750276 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
26750314 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:26751594 original size:40 final size:40
Alignment explanation
Indices: 26751500--26751644 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26751490 TACTCGAATG
*
26751500 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
26751541 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
26751581 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
26751621 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26751645 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:26783458 original size:59 final size:61
Alignment explanation
Indices: 26783393--26783509 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 61
26783383 ACCACTTTAA
* * * * *
26783393 TATTAAATTAATATAATATTTA-T-CAATATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
26783452 TATTAAAATAATAGAATGTTTATCTACAAGATAAACATTAAATTAGATTTAATATTAA
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAACATTAAATTAAATTTAATATTAA
26783510 GATAATTAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 19 0.40
61 1 0.02
62 28 0.58
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (61 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:26789169 original size:29 final size:29
Alignment explanation
Indices: 26789137--26789214 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
26789127 TGGTCGAAAG
* *
26789137 CATCCATTTTCGTATTCGATGGTCGTCAC
1 CATCCCTTTTCATATTCGATGGTCGTCAC
26789166 CATCCCTTTTCATAGTT-GATGGTCGTCAC
1 CATCCCTTTTCATA-TTCGATGGTCGTCAC
*
26789195 CATCCCTTTTCATAATCGAT
1 CATCCCTTTTCATATTCGAT
26789215 AGCTGAAACT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 1 0.02
29 41 0.93
30 2 0.05
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.38
Consensus pattern (29 bp):
CATCCCTTTTCATATTCGATGGTCGTCAC
Found at i:26789228 original size:29 final size:30
Alignment explanation
Indices: 26789196--26789324 Score: 133
Period size: 29 Copynumber: 4.4 Consensus size: 30
26789186 GGTCGTCACC
26789196 ATCCCTTTTCATAATCGATAGCTGAAA-CT
1 ATCCCTTTTCATAATCGATAGCTGAAAGCT
* * *
26789225 ATCCCTTTTTCATATTCGATAAC-CAAAGCT
1 ATCCC-TTTTCATAATCGATAGCTGAAAGCT
* * *
26789255 ATTCCTTTTCATATTCGATAGCT-AAAGTT
1 ATCCCTTTTCATAATCGATAGCTGAAAGCT
*
26789284 ATCCCTTTCCA-AATTCGATAGCTG-AAGCT
1 ATCCCTTTTCATAA-TCGATAGCTGAAAGCT
*
26789313 ATCCCCTTTCAT
1 ATCCCTTTTCAT
26789325 TATTTAAGGG
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
28 1 0.01
29 60 0.73
30 21 0.26
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATCGATAGCTGAAAGCT
Found at i:26789321 original size:59 final size:59
Alignment explanation
Indices: 26789196--26789324 Score: 154
Period size: 58 Copynumber: 2.2 Consensus size: 59
26789186 GGTCGTCACC
* *
26789196 ATCCCTTTTCATAATCGATAGCTGAAACTATCCCTTTTTCATATTCGATAACCAAAGCT
1 ATCCCTTTTCATAATCGATAGCTGAAACTATCCCTTTTCCAAATTCGATAACCAAAGCT
* * * * **
26789255 ATTCCTTTTCATATTCGATAGCT-AAAGTTATCCC-TTTCCAAATTCGATAGCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCTGAAA-CTATCCCTTTTCCAAATTCGATAACCAAAGCT
*
26789313 ATCCCCTTTCAT
1 ATCCCTTTTCAT
26789325 TATTTAAGGG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
58 32 0.54
59 27 0.46
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (59 bp):
ATCCCTTTTCATAATCGATAGCTGAAACTATCCCTTTTCCAAATTCGATAACCAAAGCT
Found at i:26793957 original size:40 final size:40
Alignment explanation
Indices: 26793898--26794313 Score: 619
Period size: 40 Copynumber: 10.4 Consensus size: 40
26793888 AAACCAAGTA
* *
26793898 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* **
26793937 CCCTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26793977 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26794017 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26794057 CCTTCGGGACTTAGCCC-GAAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
26794097 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26794137 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
26794177 CCTTCGGGACTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26794217 CCTTCGAGACTTAGCCCGGAGT-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
* *
26794257 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26794297 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
26794314 CGTTATCATC
Statistics
Matches: 345, Mismatches: 23, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.05
40 324 0.94
41 5 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26802220 original size:40 final size:40
Alignment explanation
Indices: 26802176--26802557 Score: 608
Period size: 40 Copynumber: 9.6 Consensus size: 40
26802166 CTACTCGCTT
**
26802176 AAATGCCTTCGGGACTTAGCCC-GAATATAGTAGTTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCAC
* * *
26802216 AAATGCCTTTGGGACTTAGCCCAGAATTAGTAACTCGCAG
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* *
26802256 AAATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCAG
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
26802296 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
*
26802336 AAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCAC
* *
26802376 AAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
26802416 AAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCAC
26802456 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* *
26802496 AAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
26802536 AAATGCCTTCGGGACTTAGCCC
1 AAATGCCTTCGGGACTTAGCCC
26802558 CGTTATCATC
Statistics
Matches: 322, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
39 4 0.01
40 310 0.96
41 8 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
Found at i:26805284 original size:93 final size:93
Alignment explanation
Indices: 26805155--26805326 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26805145 CGCCCATAAG
* * *
26805155 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26805220 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
*
26805248 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26805313 ACGAGTTCAGATGC
66 ACGAGCTCAGATGC
26805327 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:26805320 original size:46 final size:46
Alignment explanation
Indices: 26805148--26805317 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
26805138 TGTAACCCGC
* * *
26805148 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
26805194 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
26805244 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
26805287 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
26805318 TTCAGATGCT
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:26805342 original size:46 final size:44
Alignment explanation
Indices: 26805199--26805342 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
26805189 CGCATCCATA
* *
26805199 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCC-A---ACCATCT
* * * * *
26805246 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTC--AGATGC-CAACCATCT
26805292 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CAACCAT-CT
26805338 AGTGA
1 AGTGA
26805343 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
44 10 0.13
45 1 0.01
46 31 0.41
47 28 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCAACCATCT
Found at i:26817087 original size:46 final size:46
Alignment explanation
Indices: 26816965--26817138 Score: 230
Period size: 46 Copynumber: 3.8 Consensus size: 46
26816955 TGTAACCCGC
* * *
26816965 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
26817015 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
26817058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
26817104 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
26817139 AATGCCCAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 14
0.85 0.05 0.11
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 72 0.64
47 28 0.25
50 2 0.02
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:26819088 original size:15 final size:15
Alignment explanation
Indices: 26819059--26819108 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
26819049 CAAAGATAAC
*
26819059 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
26819073 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
26819088 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
26819103 AAGAAA
1 AAGAAA
26819109 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:26819117 original size:15 final size:15
Alignment explanation
Indices: 26819070--26819117 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
26819060 AGAAAACCGA
26819070 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
26819084 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
26819100 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
26819115 ATA
1 ATA
26819118 CGAATACGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26826976 original size:29 final size:29
Alignment explanation
Indices: 26826934--26827192 Score: 238
Period size: 29 Copynumber: 8.9 Consensus size: 29
26826924 ATCGATGCCG
*
26826934 ATCAAATATGAAAATGGATGGTTTCGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* * *
26826963 ATCAAATATGAAAATGGATAGTGAT-GACC
1 ATCAAATATGAAAAGGGATGGT-TTCGACC
* * ** *
26826992 ATCAAATCTGCAAATAGATGGTTTTGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* *
26827021 ATCAAATATGAAAAGGGATGGTAAT-GATC
1 ATCAAATATGAAAAGGGATGGT-TTCGACC
* * * **
26827050 ATCGAATATGAAAAAGGATAGTGACGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* *
26827079 ATCAAATATGAAAAGGGAAGGTTTTGACC
1 ATCAAATATGAAAAGGGATGGTTTCGACC
* * *
26827108 ATCAAATATGTAAAGGGAAGGTGAT-GACC
1 ATCAAATATGAAAAGGGATGGT-TTCGACC
**
26827137 ATCAAATATGAAAAGGGATGGTGAC-ACCC
1 ATCAAATATGAAAAGGGATGGTTTCGA-CC
*
26827166 ATCGAATATGAAAAGGGATGGTTTCGA
1 ATCAAATATGAAAAGGGATGGTTTCGA
26827193 TCGCAGTTTA
Statistics
Matches: 187, Mismatches: 35, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
28 2 0.01
29 181 0.97
30 4 0.02
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (29 bp):
ATCAAATATGAAAAGGGATGGTTTCGACC
Found at i:26827080 original size:87 final size:86
Alignment explanation
Indices: 26826934--26827189 Score: 307
Period size: 87 Copynumber: 2.9 Consensus size: 86
26826924 ATCGATGCCG
* * * *
26826934 ATCAAATATGAAAATGGATGGTTTCGACCATCAAATATGAAAATGGATAGTGATGACCATCAAAT
1 ATCAAATATGAAAAGGGATGGTAT-GACCATCAAATATGAAAAAGGATAGTGACGACCATCAAAT
* * * *
26826999 CTGCAAATAGATGGTTTTGACC
65 ATGAAAAGAGAAGGTTTTGACC
* *
26827021 ATCAAATATGAAAAGGGATGGTAATGATCATCGAATATGAAAAAGGATAGTGACGACCATCAAAT
1 ATCAAATATGAAAAGGGATGGT-ATGACCATCAAATATGAAAAAGGATAGTGACGACCATCAAAT
*
26827086 ATGAAAAGGGAAGGTTTTGACC
65 ATGAAAAGAGAAGGTTTTGACC
* * * * *
26827108 ATCAAATATGTAAAGGGAAGGTGATGACCATCAAATATGAAAAGGGATGGTGAC-ACCCATCGAA
1 ATCAAATATGAAAAGGGATGGT-ATGACCATCAAATATGAAAAAGGATAGTGACGA-CCATCAAA
* *
26827172 TATGAAAAGGGATGGTTT
64 TATGAAAAGAGAAGGTTT
26827190 CGATCGCAGT
Statistics
Matches: 147, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
86 1 0.01
87 145 0.99
88 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (86 bp):
ATCAAATATGAAAAGGGATGGTATGACCATCAAATATGAAAAAGGATAGTGACGACCATCAAATA
TGAAAAGAGAAGGTTTTGACC
Found at i:26829826 original size:15 final size:15
Alignment explanation
Indices: 26829806--26829835 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26829796 ACTTATTTTA
*
26829806 CATCTTATGAAAAAT
1 CATCTTATCAAAAAT
26829821 CATCTTATCAAAAAT
1 CATCTTATCAAAAAT
26829836 TTCCTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (15 bp):
CATCTTATCAAAAAT
Found at i:26836729 original size:15 final size:15
Alignment explanation
Indices: 26836697--26836725 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26836687 ATTTTATGTG
26836697 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
26836712 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
26836726 ATTTTCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:26838624 original size:13 final size:13
Alignment explanation
Indices: 26838606--26838630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26838596 GGTTTGTTTA
26838606 TTAAACTAATTAT
1 TTAAACTAATTAT
26838619 TTAAACTAATTA
1 TTAAACTAATTA
26838631 ACTGATTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:26846963 original size:13 final size:13
Alignment explanation
Indices: 26846945--26846969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26846935 GGTTTGTTTA
26846945 TTAAACTAATTAT
1 TTAAACTAATTAT
26846958 TTAAACTAATTA
1 TTAAACTAATTA
26846970 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:26847420 original size:14 final size:14
Alignment explanation
Indices: 26847401--26847427 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26847391 TAACTCAAGC
26847401 ATTAAGAACAAATA
1 ATTAAGAACAAATA
26847415 ATTAAGAACAAAT
1 ATTAAGAACAAAT
26847428 CAAGTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (14 bp):
ATTAAGAACAAATA
Found at i:26851504 original size:178 final size:179
Alignment explanation
Indices: 26851250--26851574 Score: 517
Period size: 178 Copynumber: 1.8 Consensus size: 179
26851240 TAATTTTATA
* * * * * *
26851250 AGAAACTAGACTTATATATATTCTTACCATAAAATTTTTAGAATTTTTGGTTTATCCAATTAGTA
1 AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATCAGTA
* * * *
26851315 CAGTTTATTCATTAAAGATACCCCTATTTCACTATTCGACAATTCCAACCTCTCTTCACTAAAAA
66 CAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAATTCCAACATCTCTTCACTAAAAA
*
26851380 TTATTTATTTCATGGTATGGGACTCCAAATTGAGAACCAATAATTTCCC
131 TTATTTATCTCATGGTATGGGACTCCAAATTGAGAACCAATAATTTCCC
*
26851429 AGAAACTAGACTCACATATGTTCTTACCAT-AAATTTTCAGAATTTTTAGTTTAGCCAATCAGTA
1 AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATCAGTA
* *
26851493 CAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAGTTCCGACATCTCTTCACTAAAAA
66 CAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAATTCCAACATCTCTTCACTAAAAA
26851558 TTATTTATCTCATGGTA
131 TTATTTATCTCATGGTA
26851575 CTGCTCTCGG
Statistics
Matches: 132, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
178 105 0.80
179 27 0.20
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (179 bp):
AGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATCAGTA
CAATTTATTCATTAAAGATACCCATATTTCACTATCCGACAATTCCAACATCTCTTCACTAAAAA
TTATTTATCTCATGGTATGGGACTCCAAATTGAGAACCAATAATTTCCC
Found at i:26851925 original size:16 final size:16
Alignment explanation
Indices: 26851906--26851937 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26851896 AATTGTTTTA
26851906 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
26851922 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
26851938 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:26852222 original size:50 final size:50
Alignment explanation
Indices: 26852147--26852475 Score: 374
Period size: 50 Copynumber: 6.5 Consensus size: 50
26852137 CTAGTACGCA
* * *
26852147 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * *
26852197 TAGTAGCCTGCACTTAGTACTACACACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *
26852247 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
** * * * *
26852297 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAACTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTGGTACACG
* * * *
26852348 TAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *
26852398 TAGTAGCCTGCACTTGGTACTACACATGTGACCTAA-AA-CTGTCTTAAACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG--GT--ACACG
* *
26852450 TACTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26852476 TGTGTTCTCA
Statistics
Matches: 240, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
48 3 0.01
49 2 0.01
50 168 0.70
51 40 0.17
52 27 0.11
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:26852390 original size:151 final size:151
Alignment explanation
Indices: 26852147--26852475 Score: 408
Period size: 151 Copynumber: 2.2 Consensus size: 151
26852137 CTAGTACGCA
* ** * * *
26852147 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACCTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAAACAATCGGGTACACATAGTAGCCTGCACTT
* * * *
26852212 AGTACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
66 AGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
*
26852277 ACCT-AACCATCTGATACACG
131 ACCTAAACCATCTGAAACACG
* * *
26852297 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAACTATCGGGTACGCATAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAAACAATCGGGTACACATAGTAGCCTGCACT
* * * * **
26852362 TAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTTGGTACTACACATGT
65 TAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACAT
** *
26852427 GACCTAAAACTGTCTTAAACACG
130 GACCT-AAACCATCTGAAACACG
* *
26852450 TACTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26852476 TGTGTTCTCA
Statistics
Matches: 151, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
150 30 0.20
151 85 0.56
153 36 0.24
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAAACAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
ACCTAAACCATCTGAAACACG
Found at i:26853154 original size:30 final size:30
Alignment explanation
Indices: 26853097--26853155 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
26853087 CAAAAATCAT
* *
26853097 ACTTTTACAAATTTGCATTTTGACCCCTAA
1 ACTTTCACAAATTTGCACTTTGACCCCTAA
* * *
26853127 ACTTTCACATATTTTCACTTTGGCCCCTA
1 ACTTTCACAAATTTGCACTTTGACCCCTA
26853156 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (30 bp):
ACTTTCACAAATTTGCACTTTGACCCCTAA
Found at i:26856485 original size:25 final size:25
Alignment explanation
Indices: 26856435--26856485 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
26856425 CCCTTATAAT
* * *
26856435 GTGAAAATGACCTTTTTGCCCTTAG
1 GTGAAAATGACCTTTATACCCATAG
26856460 GTGAAAATGA-CTATTATACCCATAG
1 GTGAAAATGACCT-TTATACCCATAG
26856485 G
1 G
26856486 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCATAG
Found at i:26856544 original size:10 final size:10
Alignment explanation
Indices: 26856529--26856563 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
26856519 TTTGTACATA
26856529 ATATGCCATG
1 ATATGCCATG
26856539 ATATGCACATG
1 ATATGC-CATG
26856550 ATATGCCATG
1 ATATGCCATG
26856560 ATAT
1 ATAT
26856564 ATATATATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:26856548 original size:21 final size:21
Alignment explanation
Indices: 26856524--26856563 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26856514 ACTGATTTGT
26856524 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
26856545 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
26856564 ATATATATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:26856645 original size:25 final size:25
Alignment explanation
Indices: 26856608--26856676 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
26856598 AGGAAGTGCT
* *
26856608 AAAGGGCTATGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTACCAA
* *
26856633 AAAGGTCTTTGCCCCAGTTTATCAA
1 AAAGGGCTTTGCCCCAGTTTACCAA
26856658 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
26856677 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTACCAA
Found at i:26856932 original size:31 final size:30
Alignment explanation
Indices: 26856897--26856980 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 30
26856887 CGATTACAGT
26856897 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTT-GGCCCAGTGATATGAATAATGA
*
26856928 AAAGGCTTTGGCCCAGTGATATGAATAATGT
1 AAAGGC-TTGGCCCAGTGATATGAATAATGA
26856959 AAAGGCATTGGCCCAGT-ATATG
1 AAAGGC-TTGGCCCAGTGATATG
26856981 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
30 5 0.10
31 43 0.86
32 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (30 bp):
AAAGGCTTGGCCCAGTGATATGAATAATGA
Found at i:26864393 original size:25 final size:25
Alignment explanation
Indices: 26864347--26864397 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
26864337 CCCTTATAAT
* *
26864347 GTGAAAATGACCTTTTTGCCCTTAG
1 GTGAAAATGACCTTTATACCCTTAG
26864372 GTGAAAATGA-CTATTATACCCTTAG
1 GTGAAAATGACCT-TTATACCCTTAG
26864397 G
1 G
26864398 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (25 bp):
GTGAAAATGACCTTTATACCCTTAG
Found at i:26864460 original size:21 final size:21
Alignment explanation
Indices: 26864436--26864475 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26864426 ACTGATTTGT
* *
26864436 ACATAATTTTCCATGATATGC
1 ACATAATATGCCATGATATGC
*
26864457 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
26864476 ATATATATGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:26864473 original size:10 final size:10
Alignment explanation
Indices: 26864446--26864475 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
26864436 ACATAATTTT
26864446 CCATGATATG
1 CCATGATATG
26864456 CACATGATATG
1 C-CATGATATG
26864467 CCATGATAT
1 CCATGATAT
26864476 ATATATATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (10 bp):
CCATGATATG
Found at i:26864548 original size:25 final size:25
Alignment explanation
Indices: 26864520--26864588 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
26864510 AGGAAGTGCT
* *
26864520 AAAGGGCTATGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTACCAA
*
26864545 AAAGGGCTTTGCCCCAGTTTATCAA
1 AAAGGGCTTTGCCCCAGTTTACCAA
* *
26864570 AAAAGGCTTTGCCCAAGTT
1 AAAGGGCTTTGCCCCAGTT
26864589 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTACCAA
Found at i:26864844 original size:31 final size:31
Alignment explanation
Indices: 26864809--26864892 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
26864799 CGTTTACAGT
26864809 AAAGGCTTCGGCCCAGTTATATGAATAATGA
1 AAAGGCTTCGGCCCAGTTATATGAATAATGA
** *
26864840 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTTATATGAATAATGA
*
26864871 AAAGGCTTCGGCCTAG-TATATG
1 AAAGGCTTCGGCCCAGTTATATG
26864893 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTTATATGAATAATGA
Found at i:26869036 original size:15 final size:15
Alignment explanation
Indices: 26869017--26869061 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
26869007 AACTAGGATT
*
26869017 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
26869032 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
26869047 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
26869062 TAATATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:26871991 original size:180 final size:181
Alignment explanation
Indices: 26871683--26872040 Score: 515
Period size: 180 Copynumber: 2.0 Consensus size: 181
26871673 GAGCTACGAA
* * * * *
26871683 ACTCCAAATTAAGATCCGTTAATTTTCTATGAAACTAGAATCATATATATTATTACCATAAAATT
1 ACTCCAAATTAAGAACCATTAATTTTCCATGAAACTAGAATCACATATATTATTACCAAAAAATT
* *
26871748 TTCAGAATTCTTGTGTTTATCCAATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGT
66 TTCAGAATTCTTGTGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTACTTCACTGT
* * * *
26871813 CCGATAGTTCTAACCTCTCTTCACTAAAAATTATTTATTTCGTGGTACGGG
131 CCGACAGTTCCAACCTCTCTTCACTAAAAATTATTTATATCATGGTACGGG
* * * * *
26871864 ACTCCAAATTGAGAACCATTAATTTTTCCA-GAAACTAGACTTACATATATTCTTACGAAAAAAT
1 ACTCCAAATTAAGAACCATTAA-TTTTCCATGAAACTAGAATCACATATATTATTACCAAAAAAT
* *
26871928 TTTTAGAATT-TT-TAGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTGCTTCACT
65 TTTCAGAATTCTTGT-GTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTACTTCACT
26871991 GTCCGACAGTTCCAACCTCTCTTCACTAAAAATTATTTATATCATGGTAC
129 GTCCGACAGTTCCAACCTCTCTTCACTAAAAATTATTTATATCATGGTAC
26872041 AGCTCTCGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
179 1 0.01
180 94 0.60
181 56 0.36
182 6 0.04
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (181 bp):
ACTCCAAATTAAGAACCATTAATTTTCCATGAAACTAGAATCACATATATTATTACCAAAAAATT
TTCAGAATTCTTGTGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACCCCTACTTCACTGT
CCGACAGTTCCAACCTCTCTTCACTAAAAATTATTTATATCATGGTACGGG
Found at i:26872389 original size:16 final size:16
Alignment explanation
Indices: 26872370--26872400 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26872360 ATTGTTTTAG
26872370 TACAAAATTTCACTTT
1 TACAAAATTTCACTTT
*
26872386 TACATAATTTCACTT
1 TACAAAATTTCACTT
26872401 ACATCATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TACAAAATTTCACTTT
Found at i:26872709 original size:50 final size:50
Alignment explanation
Indices: 26872611--26872857 Score: 225
Period size: 50 Copynumber: 4.9 Consensus size: 50
26872601 CTGGTATACA
* **
26872611 TAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGA-TACACG
* * * *
26872661 TAATAGCCTGCACTTAGTACTACACACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * ** *
26872711 TAGTAGCCTGCACTTAGTACTACACATGTCA-TTGAAGTTAATGGGTATGCA--
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--A-TCAATCTG-ATACACG
* * * *
26872762 TAGTATCCCGCACTTAGTACTACACATGCGACCTATCAATCTG-TACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * *
26872811 TAGCAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATAC
26872858 GCACAGTGTA
Statistics
Matches: 157, Mismatches: 31, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
47 3 0.02
49 43 0.27
50 73 0.46
51 29 0.18
52 5 0.03
53 4 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
Found at i:26875789 original size:7 final size:7
Alignment explanation
Indices: 26875777--26875810 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
26875767 TAATTTTATG
26875777 ATATAAC
1 ATATAAC
26875784 ATATAAC
1 ATATAAC
26875791 ATATAAC
1 ATATAAC
*
26875798 ATATATC
1 ATATAAC
26875805 ATATAA
1 ATATAA
26875811 TTTATAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAC
Found at i:26887923 original size:52 final size:50
Alignment explanation
Indices: 26887746--26887934 Score: 166
Period size: 50 Copynumber: 3.7 Consensus size: 50
26887736 ATCGGGTTGT
* ** * **
26887746 TACACGTAGTAGCCTACACTTAGTACTACACACT-TGATCAAAACTATCGGG
1 TACACATAGTAGCCTACACTTAGTACTACACA-TGTGA-CCTAACAATCTAG
* * * *
26887797 TGCGCATAGTAGCCTACACTTAGTGCTACACATGCGACCTAACAATCTAG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTAG
* * * * **
26887847 TACACGTAGTAGCTTGCACTTAGTACTACACATGTGACTTAA-AACTCTCT
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA-TCTAG
*
26887897 TAAACACATAGTAGCCTACACATAGTACTACACATGTG
1 T--ACACATAGTAGCCTACACTTAGTACTACACATGTG
26887935 TTCTCACAAC
Statistics
Matches: 110, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
49 2 0.02
50 47 0.43
51 30 0.27
52 31 0.28
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (50 bp):
TACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCTAG
Found at i:26888598 original size:29 final size:30
Alignment explanation
Indices: 26888548--26888605 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
26888538 CAAAAATCAT
* *
26888548 ACTTTTACAAATTTGTATTTTGACCCCTAA
1 ACTTTTACAAATTTGGACTTTGACCCCTAA
* *
26888578 ACTTTTAC-CATTTGGACTTTGGCCCCTA
1 ACTTTTACAAATTTGGACTTTGACCCCTA
26888606 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (30 bp):
ACTTTTACAAATTTGGACTTTGACCCCTAA
Found at i:26889941 original size:27 final size:27
Alignment explanation
Indices: 26889903--26889963 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
26889893 TACCTAGACC
*
26889903 CCCTT-TGTGGTAAAATGACT-GTATTG
1 CCCTTATGTGGTAAAATGACTATTA-TG
26889929 CCCTTATGTGGTAAAATGACTATTATG
1 CCCTTATGTGGTAAAATGACTATTATG
26889956 CCCTTATG
1 CCCTTATG
26889964 AGATGTATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 5 0.16
27 25 0.78
28 2 0.06
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTATG
Found at i:26897229 original size:37 final size:37
Alignment explanation
Indices: 26897188--26897263 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
26897178 AGAAATAATG
26897188 TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
1 TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
*
26897225 TTTTAATGTTAATAACAATTAAATATGATTAACTTTT
1 TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
26897262 TT
1 TT
26897264 CCAAATGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (37 bp):
TTTTAATGTTAATAACAATTAAATATGATTAAATTTT
Found at i:26907427 original size:40 final size:40
Alignment explanation
Indices: 26907344--26907604 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
26907334 TTGAATGCTG
* * * * * *
26907344 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26907384 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26907424 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26907464 T-CGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
26907502 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26907542 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26907581 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26907605 TGAACGAGGA
Statistics
Matches: 195, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
38 28 0.14
39 55 0.28
40 104 0.53
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26907502 original size:78 final size:78
Alignment explanation
Indices: 26907344--26907604 Score: 310
Period size: 78 Copynumber: 3.3 Consensus size: 78
26907334 TTGAATGCTG
* * * * * * *
26907344 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCGAAGG-CAT
*
26907408 TGTGCGAGATACTAAA
63 TGTGCGAGTTACTAAA
*
26907424 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT-CGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATT-G
*
26907488 TGCGAGTTATTAAA
65 TGCGAGTTACTAAA
* * * *
26907502 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGT-CCGAAGGCATTG
*
26907567 TGTGAGTTACTAAA
65 TGCGAGTTACTAAA
* *
26907581 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26907605 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
77 3 0.02
78 60 0.38
79 50 0.32
80 39 0.25
81 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTGT
GCGAGTTACTAAA
Found at i:26907624 original size:79 final size:80
Alignment explanation
Indices: 26907383--26907639 Score: 220
Period size: 78 Copynumber: 3.3 Consensus size: 80
26907373 AAGTGAATAT
* * * * * * *
26907383 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
26907447 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
26907463 AT-CGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
26907526 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
26907541 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
26907605 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
26907620 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
26907640 TACGTGATTT
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
77 1 0.01
78 75 0.50
79 62 0.41
80 13 0.09
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:26907628 original size:118 final size:117
Alignment explanation
Indices: 26907374--26907639 Score: 277
Period size: 118 Copynumber: 2.2 Consensus size: 117
26907364 CTTTGTGCTA
* ** *
26907374 AGTGAATATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCC
1 AGTGACTATATCCGG-TTAAG-TCCCGAAGGCAGTCGTGCGAGATACTAAATCCGGGTTAAGTCC
* * * **
26907438 CGAAGGCATTCGTGCGAGTTATTAAATCGGGTTAAGTCCGAAGGCATTCGTGCG
64 CGAAGGCATTCGTGCGAGTTATAAAACCGGGCTAAGTCCGAAGGCATTCGAACG
* * * * ** *
26907492 AGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGTTATGTCCC
1 AGTGACTATATCC-GGTTAAGTCCCGAAGGCAGTCGTGCGAGATACTAAATCCGGGTTAAGTCCC
* * *
26907557 GAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACG
65 GAAGGCATTCGTGCGAGTTA-TAAAACCGGGCTAAGT-CCGAAGGCATTCGAACG
*
26907611 AG-GAGCTATATCCGGTTAAATCCCGAAGG
1 AGTGA-CTATATCCGGTTAAGTCCCGAAGG
26907640 TACGTGATTT
Statistics
Matches: 121, Mismatches: 22, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
117 10 0.08
118 87 0.72
119 24 0.20
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (117 bp):
AGTGACTATATCCGGTTAAGTCCCGAAGGCAGTCGTGCGAGATACTAAATCCGGGTTAAGTCCCG
AAGGCATTCGTGCGAGTTATAAAACCGGGCTAAGTCCGAAGGCATTCGAACG
Done.