Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 90 of 253
Found at i:27927938 original size:40 final size:40
Alignment explanation
Indices: 27927735--27927938 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
27927725 CGGAATTTAA
** *
27927735 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27927775 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
27927815 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27927854 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
27927894 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
27927934 CCGGA
1 CCGGA
27927939 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27933208 original size:45 final size:45
Alignment explanation
Indices: 27933157--27933246 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
27933147 ACTTAATTGG
*
27933157 TTAATTATTGTTATTACATGCCAAGCATACCATATACAGTCCTAA
1 TTAATTATTGTTATTACATGCCAAGCATACCATATACAATCCTAA
*
27933202 TTAATTATTGTTCTTACATGCCAAGCATACCATATACAATCCTAA
1 TTAATTATTGTTATTACATGCCAAGCATACCATATACAATCCTAA
27933247 AAATAAGTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (45 bp):
TTAATTATTGTTATTACATGCCAAGCATACCATATACAATCCTAA
Found at i:27938097 original size:40 final size:40
Alignment explanation
Indices: 27938035--27938213 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 40
27938025 CGAATAAGTG
* * * *
27938035 CTCCTCATAGCACTACGGTGCTCCTGGCAGTACTTCCGTA
1 CTCCTGATAGCACTACGATGCTCCTGACAGTACTTTCGTA
* * *
27938075 CTCTTGATAGCACTACGATGCTCCTAAC-GATACTTTTGTA
1 CTCCTGATAGCACTACGATGCTCCTGACAG-TACTTTCGTA
* * *
27938115 CTCTTGATAGCACTA-TA-G-TGCT-ACAGTACTTTCGTA
1 CTCCTGATAGCACTACGATGCTCCTGACAGTACTTTCGTA
* * *
27938151 CTCCTAATAGCACTACGGTGCTCCTGATAGTACTTTCGTA
1 CTCCTGATAGCACTACGATGCTCCTGACAGTACTTTCGTA
* * *
27938191 CTCCTGTTAGTAGTACGATGCTC
1 CTCCTGATAGCACTACGATGCTC
27938214 TTGATTGCAC
Statistics
Matches: 112, Mismatches: 21, Indels: 12
0.77 0.14 0.08
Matches are distributed among these distances:
36 24 0.21
37 4 0.04
38 2 0.02
39 5 0.04
40 77 0.69
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (40 bp):
CTCCTGATAGCACTACGATGCTCCTGACAGTACTTTCGTA
Found at i:27938180 original size:20 final size:20
Alignment explanation
Indices: 27938151--27938229 Score: 52
Period size: 20 Copynumber: 4.0 Consensus size: 20
27938141 TACTTTCGTA
*
27938151 CTCCTAATAGCACTACGGTG
1 CTCCTGATAGCACTACGGTG
* * *
27938171 CTCCTGATAGTACTTTC-GTA
1 CTCCTGATAGCAC-TACGGTG
* * * *
27938191 CTCCTGTTAGTAGTACGATG
1 CTCCTGATAGCACTACGGTG
* *
27938211 CTCTTGATTGCACTACGGT
1 CTCCTGATAGCACTACGGT
27938230 ACCCCTAATT
Statistics
Matches: 42, Mismatches: 15, Indels: 4
0.69 0.25 0.07
Matches are distributed among these distances:
19 2 0.05
20 38 0.90
21 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (20 bp):
CTCCTGATAGCACTACGGTG
Found at i:27939257 original size:27 final size:27
Alignment explanation
Indices: 27939227--27939278 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
27939217 GTAAATCTAC
*
27939227 AAACCAAAGGTGTTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
27939254 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
27939279 TAGAAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:27939330 original size:27 final size:26
Alignment explanation
Indices: 27939290--27939473 Score: 170
Period size: 27 Copynumber: 6.8 Consensus size: 26
27939280 AGAAAGTCAA
* **
27939290 GGGTATTTTTGTAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAA-CAG
**
27939317 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAAACAG
*
27939343 AGGGTATTTTAGTAATTTTACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAA-CAG
* * * *
27939371 TGATATTTCGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
27939398 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
* **
27939425 GGGTATTTTGGTAATTCTATCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAG
* **
27939452 GGATATTTCAGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
27939474 TCGAGGGTAA
Statistics
Matches: 127, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 120 0.94
28 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:27939378 original size:54 final size:53
Alignment explanation
Indices: 27939289--27939473 Score: 192
Period size: 54 Copynumber: 3.4 Consensus size: 53
27939279 TAGAAAGTCA
* ** * *
27939289 AGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* * * *
27939342 GAGGGTATTTTAGTAATTTTACAAACCAGTGATATTTCGGTAATTTTATAAACT
1 -AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* * * **
27939396 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTAC-
1 A-GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA-CAAACT
*
27939450 AGGGATATTTCAGTAATTTTACAA
1 AGGG-TATTTTAGTAATTTTACAA
27939474 TCGAGGGTAA
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
53 4 0.04
54 102 0.94
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
Found at i:27939457 original size:81 final size:81
Alignment explanation
Indices: 27939300--27939470 Score: 222
Period size: 81 Copynumber: 2.1 Consensus size: 81
27939290 GGGTATTTTT
* * *
27939300 GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTACA
1 GTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTAGTAATTCTACA
* *
27939365 AACCAGTGATATTTCG
66 AACCAGGGATATTTCA
*
27939381 GTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTCTA
1 GTAATTTTATAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTTAGTAATTCTA
**
27939444 TCCTA-CAGGGATATTTCA
64 -CAAACCAGGGATATTTCA
27939462 GTAATTTTA
1 GTAATTTTA
27939471 CAATCGAGGG
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
80 1 0.01
81 74 0.94
82 4 0.05
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
GTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTAGTAATTCTACA
AACCAGGGATATTTCA
Found at i:27939647 original size:80 final size:81
Alignment explanation
Indices: 27939472--27939662 Score: 269
Period size: 80 Copynumber: 2.4 Consensus size: 81
27939462 GTAATTTTAC
* * * ** * *
27939472 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTACAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGAT
27939536 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* *
27939553 AATCGAGGGTAAAATGGTAA-TCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGATG
1 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGATA
27939617 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
27939633 AATTGAGGGTAAAATGGTAATTCTACAAAT
1 AATCGAGGGTAAAATGGTAATTCTACAAAT
27939663 TGAAGGCATT
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
80 72 0.73
81 27 0.27
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGATA
AAACGGTAATTCTATA
Found at i:27939665 original size:27 final size:27
Alignment explanation
Indices: 27939472--27939662 Score: 233
Period size: 27 Copynumber: 7.1 Consensus size: 27
27939462 GTAATTTTAC
* * *
27939472 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
27939499 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
27939526 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
27939553 AATCGAGGGTAAAATGGTAA-TCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
27939579 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
27939606 AATCGAGGATGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
27939633 AATTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
27939660 AAT
1 AAT
27939663 TGAAGGCATT
Statistics
Matches: 143, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
26 26 0.18
27 116 0.81
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:27942676 original size:46 final size:46
Alignment explanation
Indices: 27942623--27942754 Score: 201
Period size: 46 Copynumber: 2.9 Consensus size: 46
27942613 CCATGTAACC
* * * * *
27942623 CACCCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCG
1 CACCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCG
27942669 CACCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCG
1 CACCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCG
* *
27942715 TATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CACCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27942755 TGCCCAAATA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CACCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCG
Found at i:27945169 original size:15 final size:15
Alignment explanation
Indices: 27945140--27945189 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
27945130 CAAAGGTAAC
*
27945140 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
27945154 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
27945169 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
27945184 AAGAAA
1 AAGAAA
27945190 CCCAAGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.32
15 19 0.61
16 2 0.06
ACGTcount: A:0.62, C:0.12, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:27947669 original size:344 final size:344
Alignment explanation
Indices: 27947042--27947728 Score: 1338
Period size: 344 Copynumber: 2.0 Consensus size: 344
27947032 CTATTTACTA
*
27947042 ATTTTTTATAGAATTTTTGGTCAAGGCAATTAGTACAGTTTATTAGTTAAAGTATCCCATGTTTC
1 ATTTTTTATAGAATTTTTGGTCAAGACAATTAGTACAGTTTATTAGTTAAAGTATCCCATGTTTC
27947107 AAAGTTTGACTACTCTAACCTCTGTCTATTACAAATCAAATATCTCCCTGTACAGAGTTTCAATG
66 AAAGTTTGACTACTCTAACCTCTGTCTATTACAAATCAAATATCTCCCTGTACAGAGTTTCAATG
27947172 ACTATGAAGTTTGTTTCTAAAACTAGACTCAATAAGGAATCTGTACATATAAATAATTCCTTCTA
131 ACTATGAAGTTTGTTTCTAAAACTAGACTCAATAAGGAATCTGTACATATAAATAATTCCTTCTA
27947237 ATTATATTTGAACAATTTATGGTGAATTTCCAAAGTCAGAACAGGGGATCCAGGAATTGCTCTGG
196 ATTATATTTGAACAATTTATGGTGAATTTCCAAAGTCAGAACAGGGGATCCAGGAATTGCTCTGG
27947302 CCCTGTTTCACAAAAATTTAAACATCTCATAAAATATAACTCATATACCTGTTTTGTTCCATCCA
261 CCCTGTTTCACAAAAATTTAAACATCTCATAAAATATAACTCATATACCTGTTTTGTTCCATCCA
27947367 TATGAAAATAGACTCATAG
326 TATGAAAATAGACTCATAG
27947386 ATTTTTTATAGAATTTTTGGTCAAGACAATTAGTACAGTTTATTAGTTAAAGTATCCCATGTTTC
1 ATTTTTTATAGAATTTTTGGTCAAGACAATTAGTACAGTTTATTAGTTAAAGTATCCCATGTTTC
* * *
27947451 AAAGTTTGACTGCTCTAACCTCTGTCTATTACGAATCAAATATCTCCCTGTATAGAGTTTCAATG
66 AAAGTTTGACTACTCTAACCTCTGTCTATTACAAATCAAATATCTCCCTGTACAGAGTTTCAATG
27947516 ACTATGAAGTTTGTTTCTAAAACTAGACTCAATAAGGAATCTGTACATATAAATAATTCCTTCTA
131 ACTATGAAGTTTGTTTCTAAAACTAGACTCAATAAGGAATCTGTACATATAAATAATTCCTTCTA
27947581 ATTATATTTGAACAATTTATGGTGAATTTCCAAAGTCAGAACAGGGGATCCAGGAATTGCTCTGG
196 ATTATATTTGAACAATTTATGGTGAATTTCCAAAGTCAGAACAGGGGATCCAGGAATTGCTCTGG
27947646 CCCTGTTTCACAAAAATTTAAACATCTCATAAAATATAACTCATATACCTGTTTTGTTCCATCCA
261 CCCTGTTTCACAAAAATTTAAACATCTCATAAAATATAACTCATATACCTGTTTTGTTCCATCCA
27947711 TATGAAAATAGACTCATA
326 TATGAAAATAGACTCATA
27947729 ATTCTTAAAT
Statistics
Matches: 339, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
344 339 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (344 bp):
ATTTTTTATAGAATTTTTGGTCAAGACAATTAGTACAGTTTATTAGTTAAAGTATCCCATGTTTC
AAAGTTTGACTACTCTAACCTCTGTCTATTACAAATCAAATATCTCCCTGTACAGAGTTTCAATG
ACTATGAAGTTTGTTTCTAAAACTAGACTCAATAAGGAATCTGTACATATAAATAATTCCTTCTA
ATTATATTTGAACAATTTATGGTGAATTTCCAAAGTCAGAACAGGGGATCCAGGAATTGCTCTGG
CCCTGTTTCACAAAAATTTAAACATCTCATAAAATATAACTCATATACCTGTTTTGTTCCATCCA
TATGAAAATAGACTCATAG
Found at i:27948634 original size:46 final size:46
Alignment explanation
Indices: 27948466--27948641 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
27948456 TGTAACCCGC
* * * * *
27948466 CCATAAGTGAACACGGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * * * *
27948512 CCATAAGTTAACTTGGACTCAACTCAACGAGCTCGGATACCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACA-TTCGCAT
* *** *
27948558 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
27948605 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27948642 TGCCCAAATA
Statistics
Matches: 101, Mismatches: 26, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
46 68 0.67
47 33 0.33
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:27948641 original size:93 final size:93
Alignment explanation
Indices: 27948474--27948642 Score: 257
Period size: 93 Copynumber: 1.8 Consensus size: 93
27948464 GCCCATAAGT
* * * * *
27948474 GAACACGGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTTAACTTGGACTCAACTCAA
1 GAACACGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
27948539 CGAGCTCGGATACCTAGTTACATCTCTC
66 CGAGCTCGGATACCTAGTTACATCTCTC
* * *
27948567 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACACGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
27948632 CGAGTTCGGAT
66 CGAGCTCGGAT
27948643 GCCCAAATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACACGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATACCTAGTTACATCTCTC
Found at i:27960716 original size:16 final size:16
Alignment explanation
Indices: 27960669--27960717 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
27960659 CGATAAATCC
*
27960669 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGT
* **
27960685 CGAAACGCAAAAAAGT
1 CGAAATGCTGAAAAGT
*
27960701 TGAAATGCTGAAAAGT
1 CGAAATGCTGAAAAGT
27960717 C
1 C
27960718 AAAAGTTTGG
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.14
Consensus pattern (16 bp):
CGAAATGCTGAAAAGT
Found at i:27962894 original size:24 final size:24
Alignment explanation
Indices: 27962851--27962902 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
27962841 CACAAACGCA
27962851 GCTCTTCATGAGCATCCTGATATAG
1 GCTCTTCATGAGCATCCTGATAT-G
* *
27962876 GCTCTT-ATGGGCTTCCTGATATG
1 GCTCTTCATGAGCATCCTGATATG
27962899 GCTC
1 GCTC
27962903 GCTTGAACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 14 0.56
25 6 0.24
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (24 bp):
GCTCTTCATGAGCATCCTGATATG
Found at i:27972390 original size:25 final size:25
Alignment explanation
Indices: 27972356--27972415 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
27972346 AATAAAGCCC
27972356 TTAATCAATCAAAGCTCTGCTAGTA
1 TTAATCAATCAAAGCTCTGCTAGTA
27972381 TTAATCAATCAAAGCTCTGCTAGTA
1 TTAATCAATCAAAGCTCTGCTAGTA
*
27972406 TTTATCAATC
1 TTAATCAATC
27972416 CACTCGAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (25 bp):
TTAATCAATCAAAGCTCTGCTAGTA
Found at i:27974260 original size:28 final size:28
Alignment explanation
Indices: 27974228--27974296 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
27974218 AATGAGATTG
27974228 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
27974256 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
27974284 GCACTAAGTGTGC
1 GCACTAAGTGTGC
27974297 AGACTTACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
28 33 0.87
29 4 0.11
30 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:27986441 original size:50 final size:49
Alignment explanation
Indices: 27986318--27986500 Score: 190
Period size: 50 Copynumber: 3.7 Consensus size: 49
27986308 TCTATTGTCA
* * * * * *
27986318 GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGAAAACT-GT
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTA-CC--AGACTGGT
* * **
27986369 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATTAGA-TGGT
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGACTGGT
* *
27986417 GAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 G--GTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGACTGGT
*
27986468 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAAGCTACTA
27986501 TGCGTACTAG
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 5 0.05
49 30 0.27
50 38 0.35
51 36 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGACTGGT
Found at i:27993783 original size:112 final size:112
Alignment explanation
Indices: 27993534--27993796 Score: 379
Period size: 112 Copynumber: 2.3 Consensus size: 112
27993524 GTGATTATGT
* * *
27993534 GTAAGACCACGTTTAATAC-GTTGGCATCAATATGTGATTCTGATATATGTGTGCGAGTAAGACC
1 GTAAGACCACGTTTAAGACAG-TGGCATCGATATGTGATTCTGATATATGGGTGCGAGTAAGACC
* * *
27993598 ACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTACGA
65 ACATTTAATACGTTGGCATCGATATGTGACTCCGATATATGTATACGA
* *
27993646 GTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATATGGGTGCGAGTAAGACCA
1 GTAAGACCACGTTTAAGACAGTGGCATCGATATGTGATTCTGATATATGGGTGCGAGTAAGACCA
* *
27993711 CATTTAATACGTTGGCATCGATATGTGACTCCGATATGTGTATGCGA
66 CATTTAATACGTTGGCATCGATATGTGACTCCGATATATGTATACGA
*
27993758 GTAAGACC-C-TATCTAGGACAGTGGCATCGATATGTGATT
1 GTAAGACCACGT-T-TAAGACAGTGGCATCGATATGTGATT
27993797 ACATGTAAGA
Statistics
Matches: 137, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
110 1 0.01
111 2 0.01
112 134 0.98
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (112 bp):
GTAAGACCACGTTTAAGACAGTGGCATCGATATGTGATTCTGATATATGGGTGCGAGTAAGACCA
CATTTAATACGTTGGCATCGATATGTGACTCCGATATATGTATACGA
Found at i:27993794 original size:56 final size:56
Alignment explanation
Indices: 27993534--27993765 Score: 374
Period size: 56 Copynumber: 4.1 Consensus size: 56
27993524 GTGATTATGT
* *
27993534 GTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCTGATATATGTGTGCGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGCGA
*
27993590 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTACGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGCGA
* * *
27993646 GTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCTGATATATGGGTGCGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGCGA
* * * *
27993702 GTAAGACCACATTTAATACGTTGGCATCGATATGTGACTCCGATATGTGTATGCGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGCGA
27993758 GTAAGACC
1 GTAAGACC
27993766 CTATCTAGGA
Statistics
Matches: 162, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 162 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (56 bp):
GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATATATGTGTGCGA
Found at i:27996275 original size:37 final size:37
Alignment explanation
Indices: 27996216--27996322 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
27996206 AGCTCAGACG
* * * *
27996216 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
27996253 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
*
27996290 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
27996323 GAATATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
Found at i:27996587 original size:98 final size:96
Alignment explanation
Indices: 27996471--27996654 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 96
27996461 GCACATCGCC
*
27996471 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCAG-AT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTC-GCAT
27996535 T-GACCATTCGGCTTTACCACATATGCATATCTCA
63 TAG-CCATTCGGCTTTACCACATATGCATATCTCA
* *
27996569 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCGCATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAG
27996634 CCATTCGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
27996655 ATACATGTTC
Statistics
Matches: 81, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
95 1 0.01
96 34 0.42
97 1 0.01
98 45 0.56
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:27996657 original size:48 final size:48
Alignment explanation
Indices: 27996471--27996655 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
27996461 GCACATCGCC
*
27996471 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
27996521 TATATATTTCAGATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
27996569 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
27996617 TACATATTTCGCATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
27996656 TACATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:27996698 original size:22 final size:22
Alignment explanation
Indices: 27996673--27996746 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
27996663 TCATATTCAC
27996673 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
** *
27996695 CACACAGATG-CATGCTCA-CATTCAT
1 CACATTG--GCCAT--TCAGCCTT-AT
*
27996720 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
27996742 CACAT
1 CACAT
27996747 ATATGCATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 14 0.37
23 7 0.18
24 7 0.18
25 10 0.26
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:27996724 original size:47 final size:47
Alignment explanation
Indices: 27996628--27996817 Score: 211
Period size: 47 Copynumber: 4.1 Consensus size: 47
27996618 ACATATTTCG
* * * * * * * *
27996628 CATTAGCCATTCGGCTTTACCACATATATACATGTTCATATTCACCA
1 CATTGGCCATTCGGCCTTATCACACAGATGCATGTTCACATTCATCA
* *
27996675 CATTGGCCATTCAGCCTTATCACACAGATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACAGATGCATGTTCACATTCATCA
* *
27996722 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA-TCATCA
1 CATTGGCCATTCGGCCTTATCACACAGATGCATGTTCACATTCATCA
* * * * **
27996768 CATTGGCCATTCGGCCTTATCTCAAATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACAGATGCATGTTCACATTCATCA
27996815 CAT
1 CAT
27996818 AAAATCCTAA
Statistics
Matches: 123, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
46 41 0.33
47 82 0.67
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACAGATGCATGTTCACATTCATCA
Found at i:27996807 original size:93 final size:94
Alignment explanation
Indices: 27996628--27996817 Score: 247
Period size: 93 Copynumber: 2.0 Consensus size: 94
27996618 ACATATTTCG
* *
27996628 CATTAGCCATTCGGCTTTACCACATATATACATGTTCATATTCACCACATTGGCCATTCAGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCACCACATTGGCCATTCAGCCTT
* * **
27996693 ATCACACAGATGCATGCTCACATTCATCA
66 ATCACAAAGATACACACTCACATTCATCA
* * * * *
27996722 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA-TCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCACCACATTGGCCATTCAGCCTT
* * *
27996786 ATCTCAAATATACACATTCACATTCATCA
66 ATCACAAAGATACACACTCACATTCATCA
27996815 CAT
1 CAT
27996818 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
93 47 0.57
94 35 0.43
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (94 bp):
CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCACCACATTGGCCATTCAGCCTT
ATCACAAAGATACACACTCACATTCATCA
Found at i:28001082 original size:40 final size:40
Alignment explanation
Indices: 28000967--28001308 Score: 515
Period size: 40 Copynumber: 8.8 Consensus size: 40
28000957 CCAGCATGAT
* * *
28000967 TGCTCTT--GGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
28001005 TGCTCTTTGGG-TTTAGCACGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
28001042 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
28001082 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
28001122 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
28001161 TGCTCTT-GGGACTTAG-CCGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
28001197 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
28001237 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
28001277 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
28001309 CTCAATTCTC
Statistics
Matches: 276, Mismatches: 18, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
36 22 0.08
37 32 0.12
38 23 0.08
39 51 0.18
40 148 0.54
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:28001249 original size:155 final size:156
Alignment explanation
Indices: 28000967--28001308 Score: 582
Period size: 155 Copynumber: 2.2 Consensus size: 156
28000957 CCAGCATGAT
* * * *
28000967 TGCTCTT-GGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGTTTAGCACGGATATC
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGGCTTAGCACGGATATC
28001031 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
66 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
*
28001096 TAGTCCGGATATATCACTAGCACGAA
131 TAGCCCGGATATATCACTAGCACGAA
*
28001122 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTC-TTGGGACTTAGC-CGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGG-CTTAGCACGGATAT
*
28001185 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
65 CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
28001250 TTAGCCCGGATATATCACTAGCACGAA
130 TTAGCCCGGATATATCACTAGCACGAA
28001277 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTC-GGACTTAGCCCGGATATATCACT
28001309 CTCAATTCTC
Statistics
Matches: 176, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
155 117 0.66
156 59 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (156 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGGCTTAGCACGGATATC
ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
TAGCCCGGATATATCACTAGCACGAA
Found at i:28002666 original size:36 final size:37
Alignment explanation
Indices: 28002575--28002682 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
28002565 AGCTCAGACG
* *
28002575 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
28002612 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
28002649 TAATCT-CACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
28002683 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 28 0.41
37 40 0.59
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:28002953 original size:48 final size:47
Alignment explanation
Indices: 28002832--28003004 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 47
28002822 CATCGCCTAC
* *
28002832 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATTTCACA-TTGCCATTCGGCTTTACCACATATACATATCTC--ATACAT
* *
28002882 ATTTCACATTGACCATTCAGCTTTACCACATATGCATATCTCATACAT
1 ATTTCACATTG-CCATTCGGCTTTACCACATATACATATCTCATACAT
28002930 ATTTCACATTAGCCATTCGGCTTTACCACATATACAT-TCTCATACAT
1 ATTTCACATT-GCCATTCGGCTTTACCACATATACATATCTCATACAT
28002977 ATTT--C---GCCATTCGGCTTTACCACATATA
1 ATTTCACATTGCCATTCGGCTTTACCACATATA
28003005 TACATGTTCA
Statistics
Matches: 115, Mismatches: 6, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
41 23 0.20
45 1 0.01
47 14 0.12
48 38 0.33
49 3 0.03
50 36 0.31
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (47 bp):
ATTTCACATTGCCATTCGGCTTTACCACATATACATATCTCATACAT
Found at i:28003067 original size:47 final size:47
Alignment explanation
Indices: 28002982--28003167 Score: 273
Period size: 47 Copynumber: 4.0 Consensus size: 47
28002972 TACATATTTC
* * * * *
28002982 GCCATTCGGCTTTACCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
28003029 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
28003076 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
28003123 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
28003168 AAAATCCTAA
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:28003094 original size:22 final size:22
Alignment explanation
Indices: 28003067--28003138 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
28003057 GCTCACATTC
28003067 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
28003089 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
28003113 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
28003136 ATC
1 ATC
28003139 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:28003567 original size:1 final size:1
Alignment explanation
Indices: 28003561--28003629 Score: 102
Period size: 1 Copynumber: 69.0 Consensus size: 1
28003551 ATACGCAATG
* * **
28003561 AAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
28003626 AAAA
1 AAAA
28003630 CGAAATATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.94, C:0.04, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:28003599 original size:31 final size:31
Alignment explanation
Indices: 28003561--28003629 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
28003551 ATACGCAATG
28003561 AAAAAAAAAAAAAAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAACAAAAAAAAAA
**
28003592 AAAAAAAAAAAAAAAAAAAACACTAAAAAAA
1 AAAAAAAAAAAAAAAAAAAACAAAAAAAAAA
28003623 AAAAAAA
1 AAAAAAA
28003630 CGAAATATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.94, C:0.04, G:0.00, T:0.01
Consensus pattern (31 bp):
AAAAAAAAAAAAAAAAAAAACAAAAAAAAAA
Found at i:28031583 original size:44 final size:46
Alignment explanation
Indices: 28031501--28031926 Score: 347
Period size: 47 Copynumber: 9.3 Consensus size: 46
28031491 GAAAGTGATA
*
28031501 TATATATGTGAT-AGGCTAATAGGCCGA-GTG-TGAGATGTGAAAGTG
1 TATATATGTGATAAGCCTAAT-GGCCGATGTGATGA-ATGTGAAAGTG
* *
28031546 TATATAT-TGATAAGCCGAAT-GCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
28031590 TATATAATGTGATAAAGCCTAAT-GCTGTTGATTGATG-ATGTG-AAGTG
1 TATAT-ATGTGAT-AAGCCTAATGGCCGATG--TGATGAATGTGAAAGTG
*
28031637 -ATATATTTGATTAAGGCCTAATGGCC-ATGTGGATTGAATGTGAAAGTG
1 TATATATGTGA-TAA-GCCTAATGGCCGATGT-GA-TGAATGTGAAAGTG
* * *
28031685 TTATATATGTGATAAGGCCGAATGGCCAAT-TTATGAATGTGAAAGTG
1 -TATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTG
28031732 TATATATATGTGATAAGGCCTAATGGCCGAT-TGATG-ATG-GAAAGTATG
1 --TATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAG--TG
* *
28031780 TATATATGTG-GAAGCCTAATAGCCGA-GTGATGAATGTGAAAGTG
1 TATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
28031824 TATATATGTGAT-GGCCT-AT-G-CGAT-TGATGAATGTTAAAGTG
1 TATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
28031865 TATATATGTGACAGGGCC-GATGGCCAACGTGATGGATGTTGAAAGTG
1 TATATATGTGATA-AGCCTAATGGCCGATGTGATGAATG-TGAAAGTG
*
28031912 TATAAATGTGATAAG
1 TATATATGTGATAAG
28031927 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 30, Indels: 65
0.77 0.07 0.16
Matches are distributed among these distances:
41 30 0.09
42 1 0.00
43 12 0.04
44 58 0.18
45 34 0.11
46 49 0.15
47 59 0.19
48 44 0.14
49 20 0.06
50 11 0.03
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (46 bp):
TATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:28031612 original size:92 final size:92
Alignment explanation
Indices: 28031490--28031926 Score: 326
Period size: 92 Copynumber: 4.8 Consensus size: 92
28031480 AATATGTGAT
*
28031490 TGAAAGTGATATATATATGTGAT--AGGCTAATAGGCCGAGTG-TGAGATGTGAAAGTGTATATA
1 TGAAAGTG-TATATA-ATGTGATAAAGCCTAAT--GCCGAGTGATGA-ATGTGAAAGTGTATATA
* *
28031552 T-TGATAA-GCCGAAT-GCCAATGTGATGAATG
61 TGTGATAAGGCCTAATGGCCGAT-TGATGAATG
* * *
28031582 TGAAAGTGTATATAATGTGATAAAGCCTAATGCTG-TTGATTGATGATGTG-AAGTG-ATATATT
1 TGAAAGTGTATATAATGTGATAAAGCCTAATGCCGAGTGA-TGA--ATGTGAAAGTGTATATATG
28031644 TGATTAAGGCCTAATGGCC-ATGTGGATTGAATG
63 TGA-TAAGGCCTAATGGCCGAT-T-GA-TGAATG
* * * * *
28031677 TGAAAGTGT-TATATATGTGATAAGGCCGAATGGCCAATTTATGAATGTGAAAGTGTATATATAT
1 TGAAAGTGTATATA-ATGTGATAAAGCCTAAT-GCCGAGTGATGAATGTGAAAGTG--TATATAT
28031741 GTGATAAGGCCTAATGGCCGATTGATG-ATG
62 GTGATAAGGCCTAATGGCCGATTGATGAATG
*
28031771 -GAAAGTATGTATAT-ATGTG--GAAGCCTAATAGCCGAGTGATGAATGTGAAAGTGTATATATG
1 TGAAAG--TGTATATAATGTGATAAAGCCTAAT-GCCGAGTGATGAATGTGAAAGTGTATATATG
28031832 TGAT--GGCCT-AT-G-CGATTGATGAATG
63 TGATAAGGCCTAATGGCCGATTGATGAATG
* * ** * * * *
28031857 TTAAAGTGTATAT-ATGTGACAGGGCC-GATGGCCAACGTGATGGATGTTGAAAGTGTATAAATG
1 TGAAAGTGTATATAATGTGATAAAGCCTAAT-GCCGA-GTGATGAATG-TGAAAGTGTATATATG
28031920 TGATAAG
63 TGATAAG
28031927 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 26, Indels: 62
0.77 0.07 0.16
Matches are distributed among these distances:
85 21 0.07
86 10 0.03
87 18 0.06
88 24 0.08
89 2 0.01
90 29 0.10
91 17 0.06
92 51 0.18
93 15 0.05
94 22 0.08
95 40 0.14
96 10 0.03
97 19 0.07
98 11 0.04
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (92 bp):
TGAAAGTGTATATAATGTGATAAAGCCTAATGCCGAGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATTGATGAATG
Found at i:28031690 original size:48 final size:47
Alignment explanation
Indices: 28031490--28031926 Score: 277
Period size: 48 Copynumber: 9.5 Consensus size: 47
28031480 AATATGTGAT
*
28031490 TGAAAGTGATATATATATGTGAT-AGG-CTAATAGGCCGA-GTG-TGAGATG
1 TGAAAGTG-T-TATATAT-TGATAAGGCCTAAT-GGCCAATGTGATGA-ATG
*
28031538 TGAAAGTG-TATATATTGATAA-GCCGAAT-GCCAATGTGATGAATG
1 TGAAAGTGTTATATATTGATAAGGCCTAATGGCCAATGTGATGAATG
* ***
28031582 TGAAAGTG-TATATAATGTGATAAAGCCTAAT-GCTGTTGATTGATG-ATG
1 TGAAAGTGTTATAT-AT-TGATAAGGCCTAATGGCCAATG--TGATGAATG
*
28031630 TG-AAGTGATATAT-TTGATTAAGGCCTAATGGCC-ATGTGGATTGAATG
1 TGAAAGTGTTATATATTGA-TAAGGCCTAATGGCCAATGT-GA-TGAATG
* *
28031677 TGAAAGTGTTATATATGTGATAAGGCCGAATGGCCAAT-TTATGAATG
1 TGAAAGTGTTATATAT-TGATAAGGCCTAATGGCCAATGTGATGAATG
*
28031724 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT-TGATG-ATG
1 TGAAAGTGT-TATATAT-TGATAAGGCCTAATGGCCAATGTGATGAATG
* * * *
28031771 -GAAAGTATGTATATATGTG-GAA-GCCTAATAGCCGA-GTGATGAATG
1 TGAAAGTGT-TATATAT-TGATAAGGCCTAATGGCCAATGTGATGAATG
*
28031816 TGAAAGTG-TATATATGTGAT--GGCCT-AT-G-CGAT-TGATGAATG
1 TGAAAGTGTTATATAT-TGATAAGGCCTAATGGCCAATGTGATGAATG
* * * * * *
28031857 TTAAAGTG-TATATATGTGACAGGGCC-GATGGCCAACGTGATGGATG
1 TGAAAGTGTTATATAT-TGATAAGGCCTAATGGCCAATGTGATGAATG
*
28031903 TTGAAAGTG-TATAAATGTGATAAG
1 -TGAAAGTGTTATATAT-TGATAAG
28031927 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 30, Indels: 67
0.77 0.07 0.16
Matches are distributed among these distances:
41 30 0.09
42 1 0.00
43 12 0.04
44 57 0.17
45 29 0.09
46 52 0.16
47 59 0.18
48 60 0.18
49 21 0.06
50 5 0.02
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (47 bp):
TGAAAGTGTTATATATTGATAAGGCCTAATGGCCAATGTGATGAATG
Found at i:28035885 original size:49 final size:48
Alignment explanation
Indices: 28035817--28036006 Score: 202
Period size: 51 Copynumber: 3.8 Consensus size: 48
28035807 AAGTTATCTG
* * **
28035817 GTACGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-ACAGTCAA
* *
28035866 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCTCCA-TCAA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-C-C-ACAGTCAA
* * *
28035916 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCAA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACAG---TCAA
* * *
28035967 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
28036007 TCACAATAGA
Statistics
Matches: 119, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 35 0.29
50 40 0.34
51 41 0.34
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCACAGTCAA
Found at i:28036007 original size:101 final size:99
Alignment explanation
Indices: 28035822--28036008 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
28035812 ATCTGGTACG
* ** *
28035822 CGTAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACT
1 CGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAAGTACACATAGTAGCCTGCACT
*
28035887 TAGTACTACACACGTGACCTCTCCATCAAATACA
66 TAGTACTACACACGCGACCTCTCCATCAAATACA
* * *
28035921 CGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAAGTACGCATAGTAGCCTGC
1 CGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCAAGTACACATAGTAGCCTGC
*
28035985 ACTTAGTACTACACATGCGACCTC
63 ACTTAGTACTACACACGCGACCTC
28036009 ACAATAGATC
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 4 0.05
99 32 0.42
101 40 0.53
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
CGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAAGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTCTCCATCAAATACA
Found at i:28039627 original size:39 final size:40
Alignment explanation
Indices: 28039550--28039696 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
28039540 TAGCTCCTCG
* * *
28039550 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
28039590 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
28039629 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
28039669 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
28039697 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:28039707 original size:80 final size:80
Alignment explanation
Indices: 28039596--28039776 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
28039586 CTCATTCAAT
* * *
28039596 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
28039659 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
28039675 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
28039739 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
28039756 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
28039777 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:28039736 original size:40 final size:40
Alignment explanation
Indices: 28039593--28039776 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
28039583 TAACTCATTC
* *
28039593 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
28039633 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
28039673 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
28039713 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
28039754 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
28039777 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:28047463 original size:39 final size:40
Alignment explanation
Indices: 28047386--28047532 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
28047376 TAGCTCCTCG
* * *
28047386 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
28047426 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
28047465 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
28047505 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
28047533 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:28047543 original size:80 final size:80
Alignment explanation
Indices: 28047432--28047612 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
28047422 CTCATTCAAT
* * *
28047432 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
28047495 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
28047511 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
28047575 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
28047592 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
28047613 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:28047572 original size:40 final size:40
Alignment explanation
Indices: 28047429--28047612 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
28047419 TAACTCATTC
* *
28047429 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
28047469 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
28047509 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
28047549 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
28047590 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
28047613 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:28050786 original size:48 final size:47
Alignment explanation
Indices: 28050733--28050939 Score: 202
Period size: 48 Copynumber: 4.3 Consensus size: 47
28050723 CATGTCTGAG
* * *
28050733 ACATGGTCTTACACTGGCTCACATGTTGAAGCCAATGGCATGTCCCAA
1 ACATGGTCTTACACTGGCTCACATATTG-AGCCGATGCCATGTCCCAA
** * * * **
28050781 ACATGGTCTTACACTACCTCTCGTCTCAATGCCGATGCCATGTCCCAA
1 ACATGGTCTTACACTGGCTCACATATTGA-GCCGATGCCATGTCCCAA
* *
28050829 ACATGGTCTTACACTGGCTCTCACAATATT--GCCGATGCCATCTTCCAA
1 ACATGGTCTTACACTGG--CTCAC-ATATTGAGCCGATGCCATGTCCCAA
* * * *
28050877 ACATGGTCTTACACTGGCTCTCATATCGTGCCCGATGCCATGACCCAA
1 ACATGGTCTTACACTGGCTCACATATTGAG-CCGATGCCATGTCCCAA
28050925 ACATGGTCTTACACT
1 ACATGGTCTTACACT
28050940 CGCACATATC
Statistics
Matches: 130, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
45 4 0.03
46 4 0.03
47 2 0.02
48 114 0.88
50 4 0.03
51 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
ACATGGTCTTACACTGGCTCACATATTGAGCCGATGCCATGTCCCAA
Found at i:28054746 original size:29 final size:29
Alignment explanation
Indices: 28054686--28054782 Score: 119
Period size: 28 Copynumber: 3.4 Consensus size: 29
28054676 AATGGGCTCG
* *
28054686 ATGGGCCATAT-AAATAAGATTGGGCCTG
1 ATGGGCCATATGAAATGAGATTGGGCCTA
* *
28054714 ATGGGCCATATGAACGTGA-ATTGGGCCAA
1 ATGGGCCATATGAA-ATGAGATTGGGCCTA
28054743 ATGGGCCATAT-AAATGAGATTGGGCCTA
1 ATGGGCCATATGAAATGAGATTGGGCCTA
*
28054771 GTGGGCCATATG
1 ATGGGCCATATG
28054783 CATGTGTGTA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
27 3 0.05
28 32 0.55
29 21 0.36
30 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
ATGGGCCATATGAAATGAGATTGGGCCTA
Found at i:28057102 original size:29 final size:28
Alignment explanation
Indices: 28057064--28057160 Score: 81
Period size: 29 Copynumber: 3.4 Consensus size: 28
28057054 TACATGTGAT
* **
28057064 ATGGGTCATATGAATATGAATTGGGCTTG
1 ATGGGCCATAT-AATATGAATTGGGCCGG
* *
28057093 ATGGGCCATATAGATGTGAATTAGGCCGG
1 ATGGGCCATATA-ATATGAATTGGGCCGG
* *
28057122 ATGGGCCATATAA-ATAAGATTGGGCC-A
1 ATGGGCCATATAATATGA-ATTGGGCCGG
28057149 AGTGGGCCATAT
1 A-TGGGCCATAT
28057161 GCATGTATGT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
27 3 0.05
28 19 0.34
29 34 0.61
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.27
Consensus pattern (28 bp):
ATGGGCCATATAATATGAATTGGGCCGG
Found at i:28062050 original size:40 final size:40
Alignment explanation
Indices: 28061995--28062258 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
28061985 CGGATGATAA
28061995 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
28062035 CCGGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
28062075 TCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
28062115 TCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
28062155 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
** * ***
28062195 TTGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
28062235 CCGGGCTAAGTCTAGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
28062259 AAGCGAGTAG
Statistics
Matches: 206, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 206 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:28068030 original size:29 final size:29
Alignment explanation
Indices: 28067958--28068060 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
28067948 GCATGTGATG
* *
28067958 TGGGCCATATGAATCTAAATTGGGCCTGA
1 TGGGCCATATGAATGTAAATTAGGCCTGA
* *
28067987 TGGGCAATATGAATGTGAATTAGGCCTGA
1 TGGGCCATATGAATGTAAATTAGGCCTGA
* * * *
28068016 TGGGCCATATAAATG-AGATTGGGCC-AA
1 TGGGCCATATGAATGTAAATTAGGCCTGA
*
28068043 GTGGGCCATATGCATGTA
1 -TGGGCCATATGAATGTA
28068061 TGTAGGGGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 1 0.02
28 20 0.33
29 39 0.65
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGGCCATATGAATGTAAATTAGGCCTGA
Found at i:28071338 original size:25 final size:28
Alignment explanation
Indices: 28071300--28071354 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 28
28071290 TTTCATCATG
* *
28071300 TATTATTCATAATC-AT-ATTCAAC-CA
1 TATTATTAAAAATCAATCATTCAACACA
28071325 TATTATTAAAAATCAATCATTCAACACA
1 TATTATTAAAAATCAATCATTCAACACA
28071353 TA
1 TA
28071355 ATAGCGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.48
26 2 0.08
27 7 0.28
28 4 0.16
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (28 bp):
TATTATTAAAAATCAATCATTCAACACA
Found at i:28073696 original size:12 final size:12
Alignment explanation
Indices: 28073679--28073705 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
28073669 ATTCCTCAAA
28073679 GATAGCTACACT
1 GATAGCTACACT
28073691 GATAGCTACACT
1 GATAGCTACACT
28073703 GAT
1 GAT
28073706 GGAGCAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (12 bp):
GATAGCTACACT
Found at i:28079371 original size:46 final size:46
Alignment explanation
Indices: 28079321--28079496 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
28079311 TGGTTGAGCA
28079321 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
28079367 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
28079412 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
28079460 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
28079497 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:28079477 original size:93 final size:93
Alignment explanation
Indices: 28079318--28079489 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
28079308 GGATGGTTGA
* *
28079318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
28079383 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
28079411 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
28079476 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
28079490 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:28086905 original size:46 final size:46
Alignment explanation
Indices: 28086855--28087030 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
28086845 TGGTTGAGCA
28086855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
28086901 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
28086946 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
28086994 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
28087031 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:28087011 original size:93 final size:93
Alignment explanation
Indices: 28086852--28087023 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
28086842 GGATGGTTGA
* *
28086852 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
28086917 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
28086945 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
28087010 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
28087024 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:28091937 original size:27 final size:27
Alignment explanation
Indices: 28091899--28091993 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
28091889 TAAAACCCTG
*
28091899 ATTTGTAAAATTACTGAAATATCTCTA
1 ATTTGTAAAATTACTGAAATACCTCTA
** * *
28091926 ATTTGTAAAATTACAAAAATACCCCTG
1 ATTTGTAAAATTACTGAAATACCTCTA
* * *
28091953 ATTTGTAAATTTATTGAAATACCCTCAA
1 ATTTGTAAAATTACTGAAATA-CCTCTA
28091981 ATTT-TAAAATTAC
1 ATTTGTAAAATTAC
28091994 CGTGTAATAT
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 46 0.87
28 7 0.13
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.38
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCTCTA
Found at i:28099988 original size:27 final size:27
Alignment explanation
Indices: 28099958--28100029 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
28099948 CCCCAGTTTT
*
28099958 TAAAATTACCAAAATACCCTTGTAGTG
1 TAAAATTACCAAAATACCCTTATAGTG
****
28099985 TAAAATTGTTGAAATACCCTTATAGTG
1 TAAAATTACCAAAATACCCTTATAGTG
28100012 TAAAATTACCAAAATACC
1 TAAAATTACCAAAATACC
28100030 TCTGTAGGTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTTATAGTG
Found at i:28100042 original size:27 final size:26
Alignment explanation
Indices: 28099958--28100044 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 26
28099948 CCCCAGTTTT
28099958 TAAAATTACCAAAATACCCTTGTAGTG
1 TAAAATTACCAAAATACCC-TGTAGTG
**** *
28099985 TAAAATTGTTGAAATACCCTTATAGTG
1 TAAAATTACCAAAATACCC-TGTAGTG
28100012 TAAAATTACCAAAATACCTCTGTAG-G
1 TAAAATTACCAAAATACC-CTGTAGTG
28100038 TTAAAAT
1 -TAAAAT
28100045 GACTGTTTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 46 0.96
28 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.32
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTGTAGTG
Found at i:28100402 original size:22 final size:22
Alignment explanation
Indices: 28100354--28100413 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
28100344 TTAAGCTGAT
28100354 TATGGCTCTGTGCCAACCTAAA
1 TATGGCTCTGTGCCAACCTAAA
* * * * *
28100376 AATGGCTCTGTGCCATCTTGAC
1 TATGGCTCTGTGCCAACCTAAA
*
28100398 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
28100414 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTAAA
Found at i:28100573 original size:32 final size:31
Alignment explanation
Indices: 28100480--28100579 Score: 101
Period size: 32 Copynumber: 3.1 Consensus size: 31
28100470 ATATACCCAA
*
28100480 GGCTATGTGCCGATTATATTACCGTCACTGAT
1 GGCTATGTGCCAATTATATTACCGT-ACTGAT
* ** * *
28100512 GGCTATGTGTCAAACATAATACAGTTACTGAT
1 GGCTATGTGCCAATTATATTACCG-TACTGAT
* *
28100544 GGCTTTGTGCCAATTATATTACCGCTACTGAA
1 GGCTATGTGCCAATTATATTACCG-TACTGAT
28100576 GGCT
1 GGCT
28100580 TAGAGCCGCA
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 52 0.98
33 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (31 bp):
GGCTATGTGCCAATTATATTACCGTACTGAT
Found at i:28100875 original size:27 final size:27
Alignment explanation
Indices: 28100816--28100875 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
28100806 GTTTGGGCTA
* *
28100816 GGCCCAATTGATTCTGTTATGGGCTGT
1 GGCCCAAATGATTCTGTAATGGGCTGT
* *
28100843 GACCCAAATGATAT-TGTAATGGGCTTT
1 GGCCCAAATGAT-TCTGTAATGGGCTGT
28100870 GGCCCA
1 GGCCCA
28100876 TGTATCTCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (27 bp):
GGCCCAAATGATTCTGTAATGGGCTGT
Found at i:28101367 original size:19 final size:19
Alignment explanation
Indices: 28101343--28101381 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
28101333 TAACTTTTCA
28101343 ATGTACCACTTTATAAAAT
1 ATGTACCACTTTATAAAAT
28101362 ATGTACCACTTTATAAAAT
1 ATGTACCACTTTATAAAAT
28101381 A
1 A
28101382 AACTAACGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (19 bp):
ATGTACCACTTTATAAAAT
Found at i:28103024 original size:61 final size:61
Alignment explanation
Indices: 28102949--28103071 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
28102939 AAAAATAACC
28102949 ATAGGTGAAATGTGGTTATTTTGATGTTTTATGGTATAATATGAAGCTTGAAGTTATGTTA
1 ATAGGTGAAATGTGGTTATTTTGATGTTTTATGGTATAATATGAAGCTTGAAGTTATGTTA
28103010 ATAGGTGAAATGTGGTTATTTTGATGTTTTATGGTATAATATGAAGCTTGAAGTTATGTTA
1 ATAGGTGAAATGTGGTTATTTTGATGTTTTATGGTATAATATGAAGCTTGAAGTTATGTTA
28103071 A
1 A
28103072 ATGACTTGAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (61 bp):
ATAGGTGAAATGTGGTTATTTTGATGTTTTATGGTATAATATGAAGCTTGAAGTTATGTTA
Found at i:28103069 original size:32 final size:32
Alignment explanation
Indices: 28102972--28103069 Score: 91
Period size: 32 Copynumber: 3.2 Consensus size: 32
28102962 GGTTATTTTG
28102972 ATGTTTTATGGTATAATATGAAGCTTGAAGTT
1 ATGTTTTATGGTATAATATGAAGCTTGAAGTT
* * **
28103004 ATG-TTAATAGGTGA-AATGTG--G-TT-ATTTT
1 ATGTTTTAT-GGT-ATAATATGAAGCTTGAAGTT
28103032 GATGTTTTATGGTATAATATGAAGCTTGAAGTT
1 -ATGTTTTATGGTATAATATGAAGCTTGAAGTT
28103065 ATGTT
1 ATGTT
28103070 AAATGACTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 18
0.65 0.11 0.24
Matches are distributed among these distances:
28 4 0.08
29 13 0.27
30 5 0.10
31 5 0.10
32 18 0.37
33 4 0.08
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (32 bp):
ATGTTTTATGGTATAATATGAAGCTTGAAGTT
Found at i:28113075 original size:56 final size:56
Alignment explanation
Indices: 28112923--28113116 Score: 235
Period size: 57 Copynumber: 3.4 Consensus size: 56
28112913 ATAGGATTCC
* * * *
28112923 GATATGTGATGTACGAGTAAGACTACGTTTAATACGTTGGCATCGATATATGAATCC
1 GATATGTG-TGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
* *
28112980 GTTATGTGATGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
1 GATATGTG-TGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
* * * * **
28113037 GATATATGTGTGCGAGTAAGACCATGTTTAATATGTTGGCATTGATATGTGACCCAT
1 GATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATC-T
* *
28113094 TATATGTGTGTGTGAGTAAGACC
1 GATATGTGTGTGCGAGTAAGACC
28113117 CTATCTGGGA
Statistics
Matches: 119, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
56 41 0.34
57 78 0.66
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.34
Consensus pattern (56 bp):
GATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGAATCT
Found at i:28116538 original size:26 final size:26
Alignment explanation
Indices: 28116498--28116565 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 26
28116488 ACATTTCGAC
*
28116498 TCACAGCTCGTGTGAGTAGACTTACT
1 TCACAGCTAGTGTGAGTAGACTTACT
* *
28116524 TCATAGCTTA-TGTGAGTAGACTTATT
1 TCACAGC-TAGTGTGAGTAGACTTACT
28116550 TCACAGCTAGTGTGAG
1 TCACAGCTAGTGTGAG
28116566 CAATGATGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.06
26 33 0.92
27 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (26 bp):
TCACAGCTAGTGTGAGTAGACTTACT
Found at i:28119351 original size:20 final size:20
Alignment explanation
Indices: 28119288--28119352 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
28119278 TATACAAAGT
*
28119288 ATGCCACAAAGGC-AACATA
1 ATGCCACAAAGGCTAACAAA
* * * *
28119307 ATTCCA-AAATGACTAATAGA
1 ATGCCACAAA-GGCTAACAAA
*
28119327 TTGCCACAAAGGCTAACAAA
1 ATGCCACAAAGGCTAACAAA
28119347 ATGCCA
1 ATGCCA
28119353 TGAAGGCCCA
Statistics
Matches: 33, Mismatches: 10, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
18 3 0.09
19 7 0.21
20 20 0.61
21 3 0.09
ACGTcount: A:0.46, C:0.23, G:0.14, T:0.17
Consensus pattern (20 bp):
ATGCCACAAAGGCTAACAAA
Found at i:28120798 original size:23 final size:23
Alignment explanation
Indices: 28120744--28120858 Score: 176
Period size: 23 Copynumber: 5.0 Consensus size: 23
28120734 CCTAGCCTCT
*
28120744 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
28120767 TTTTAATAACTGAGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
28120791 TTTAATAACTGGGACATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
28120814 TTTAATAATTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
28120837 TTTAATAACTGGGGCATAAGCC
1 TTTAATAACTGGGGCATAAGCC
28120859 ATTTTTCATT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
23 61 0.74
24 21 0.26
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:28120941 original size:20 final size:20
Alignment explanation
Indices: 28120913--28120979 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
28120903 TTATGATTAC
*
28120913 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
28120933 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
28120953 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
28120973 ACCATGT
1 ATCATGT
28120980 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:28128457 original size:23 final size:24
Alignment explanation
Indices: 28128426--28128528 Score: 140
Period size: 23 Copynumber: 4.4 Consensus size: 24
28128416 CTGGAGGCCT
*
28128426 AGCCTCTTTTAATAACTGGGG-AAA
1 AGCC-CTTTTAATAACTGGGGCATA
28128450 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
28128474 AGCCC-TTTAATAACTGGTGTACA
1 AGCCCTTTTAATAACTGGGGCATA
28128497 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
28128520 AGCCCTTTT
1 AGCCCTTTT
28128529 TCACTTCCTC
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
23 56 0.80
24 14 0.20
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:28128506 original size:46 final size:46
Alignment explanation
Indices: 28128433--28128527 Score: 156
Period size: 46 Copynumber: 2.1 Consensus size: 46
28128423 CCTAGCCTCT
28128433 TTTAATAACTGGGGAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
28128479 TTTAATAACTGGTGTACAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGG-GGAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
28128525 TTT
1 TTT
28128528 TTCACTTCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 38 0.83
47 8 0.17
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:28128644 original size:20 final size:20
Alignment explanation
Indices: 28128583--28128637 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
28128573 ATTACATCAC
28128583 GTGCATATCATACATGTCAT
1 GTGCATATCATACATGTCAT
28128603 GTGCATATCATACATGTCAT
1 GTGCATATCATACATGTCAT
28128623 GTGCATATCATACAT
1 GTGCATATCATACAT
28128638 ACCATGTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (20 bp):
GTGCATATCATACATGTCAT
Found at i:28131850 original size:48 final size:48
Alignment explanation
Indices: 28131726--28131861 Score: 159
Period size: 48 Copynumber: 2.9 Consensus size: 48
28131716 TTAGGGGTTA
* *
28131726 CATTAAGTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCGAGATT
1 CATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCAAGATT
* ** * **
28131774 CATTGAGTTGACTTTGGGCCATGGTATTGGCACTTTGGGTGCAAGATT
1 CATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCAAGATT
* *
28131822 CGTTGAGTTGGCTTCACGG-CATGATATTGGCAATT-AGGTG
1 CATTGAGTTGGCTTCA-GGCCATGATATTGGCACTTCAGGTG
28131862 TGAAACTTTC
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
47 4 0.06
48 66 0.92
49 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (48 bp):
CATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCAAGATT
Found at i:28134015 original size:13 final size:13
Alignment explanation
Indices: 28133997--28134022 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28133987 CCACCATCAT
28133997 TTTTTCATCTTTA
1 TTTTTCATCTTTA
28134010 TTTTTCATCTTTA
1 TTTTTCATCTTTA
28134023 GAACCGAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTTCATCTTTA
Found at i:28138979 original size:49 final size:49
Alignment explanation
Indices: 28138758--28139270 Score: 852
Period size: 49 Copynumber: 10.7 Consensus size: 49
28138748 CCCTTCGGGA
* * * * *
28138758 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
28138805 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
28138852 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28138899 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28138946 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28138995 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
28139044 CTTATCACATATATATACACTTTCACATTAATCACACCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28139093 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28139140 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28139189 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
28139238 CTTATCAC--ATATATACACTTTCACATTCATCAC
1 CTTATCACATATATATACACTTTCACATTCATCAC
28139271 GTAGAATCCT
Statistics
Matches: 445, Mismatches: 15, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 205 0.46
49 239 0.54
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:28139054 original size:145 final size:144
Alignment explanation
Indices: 28138758--28139270 Score: 863
Period size: 145 Copynumber: 3.6 Consensus size: 144
28138748 CCCTTCGGGA
* * * * * * * *
28138758 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
28138822 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
28138885 ATCGGCTATTAGGC
131 ATCGGCCATTAGGC
28138899 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
28138963 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
28139028 ACATCGGCCATTAGGC
129 ACATCGGCCATTAGGC
* *
28139044 CTTATCACATATATATACACTTTCACATTAATCACACCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
28139109 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
28139174 CATCGGCCATTAGGC
130 CATCGGCCATTAGGC
28139189 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
28139254 ACTTTCACATTCATCAC
65 ACTTTCACATTCATCAC
28139271 GTAGAATCCT
Statistics
Matches: 353, Mismatches: 13, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
141 47 0.13
143 47 0.13
145 214 0.61
147 45 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (144 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:28143203 original size:40 final size:40
Alignment explanation
Indices: 28143123--28143537 Score: 572
Period size: 40 Copynumber: 10.7 Consensus size: 40
28143113 CCAGCATGAT
* *
28143123 TGCTCTTCGGGACCTAGCCCGGATTA-A--AC-AGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGA-TACATTACTAGCACGAA
* * ** * * *
28143160 TGCTCTTAGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
* *
28143200 TGCTCTTCG-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAG-ACTTAGCCCGGATACATTACTAGCACGAA
*
28143240 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
28143280 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
28143320 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
* *
28143360 TGCTCTT----A---AG-TC-TA-ACATTACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
28143390 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
28143430 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
28143470 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
*
28143510 TGCTCTTCGGGACTTAGCCCGGATACAT
1 TGCTCTTCGAGACTTAGCCCGGATACAT
28143538 CACTCTCAAT
Statistics
Matches: 344, Mismatches: 18, Indels: 29
0.88 0.05 0.07
Matches are distributed among these distances:
30 23 0.07
31 1 0.00
32 1 0.00
33 2 0.01
34 1 0.00
36 3 0.01
37 21 0.06
38 1 0.00
39 4 0.01
40 286 0.83
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAA
Found at i:28143414 original size:190 final size:190
Alignment explanation
Indices: 28143189--28143537 Score: 646
Period size: 190 Copynumber: 1.8 Consensus size: 190
28143179 CGGATATATC
*
28143189 ACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAGACT
1 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACT
28143254 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGA
66 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGA
28143319 ATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTAAGTCTAACATT
131 ATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTAAGTCTAACATT
*
28143379 ACTAGCACGAATGCTCTTC-GAGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGAC
1 ACTAGCACGAATGCTCTTCGGA-ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGAC
*
28143443 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACG
65 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACG
*
28143508 AATGCTCTTCGGGACTTAGCCCGGATACAT
130 AATGCTCTTCGAGACTTAGCCCGGATACAT
28143538 CACTCTCAAT
Statistics
Matches: 154, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
189 2 0.01
190 152 0.99
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (190 bp):
ACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACT
TAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGA
ATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTAAGTCTAACATT
Found at i:28143424 original size:150 final size:150
Alignment explanation
Indices: 28143224--28143516 Score: 568
Period size: 150 Copynumber: 2.0 Consensus size: 150
28143214 TAGTCCGGAT
28143224 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
28143289 AGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAG
66 AGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAG
28143354 CACGAATGCTCTTAAGTCTA
131 CACGAATGCTCTTAAGTCTA
* *
28143374 ACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
28143439 AGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAG
66 AGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAG
28143504 CACGAATGCTCTT
131 CACGAATGCTCTT
28143517 CGGGACTTAG
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 141 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (150 bp):
ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
AGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATTACTAG
CACGAATGCTCTTAAGTCTA
Found at i:28144815 original size:35 final size:36
Alignment explanation
Indices: 28144744--28144820 Score: 102
Period size: 35 Copynumber: 2.1 Consensus size: 36
28144734 TTATTACGAA
* * *
28144744 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCC-GACAAAATCCCCACACGAAGTCATCGG
*
28144781 GTCTTACCC-ACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
28144816 GTCTT
1 GTCTT
28144821 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 27 0.75
37 9 0.25
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
Found at i:28145159 original size:49 final size:47
Alignment explanation
Indices: 28144940--28145352 Score: 637
Period size: 47 Copynumber: 8.7 Consensus size: 47
28144930 CCTTCGGGAC
* * * * * * *
28144940 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
28144987 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
28145034 TATCTCATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
28145081 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
28145128 TATCACATATATATACACTTTCACATTCATCACATCGGCCATAAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
28145177 TATCACATATATATACACTTTCACATTCATCACAACGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
28145226 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
28145273 TGTCACATATATATACACTTTCACATTCATCTCATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
28145322 TATCACATATATACACTTTCACATTCATCAC
1 TATCACATATATACACTTTCACATTCATCAC
28145353 GTAGAATCCT
Statistics
Matches: 339, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 201 0.59
49 138 0.41
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:28145175 original size:96 final size:95
Alignment explanation
Indices: 28144940--28145352 Score: 641
Period size: 96 Copynumber: 4.3 Consensus size: 95
28144930 CCTTCGGGAC
* * * * * * * *
28144940 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACACT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACT
*
28145004 TTCACATTCATCACATCGGCCATTAGGCTT
66 TTCACATTCATCACATCGGCCATTAGGCCT
* *
28145034 TATCTCATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACACT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACT
28145098 TTCACATTCATCACATCGGCCATTAGGCCT
66 TTCACATTCATCACATCGGCCATTAGGCCT
*
28145128 TATCACATATATATACACTTTCACATTCATCACATCGGCCATAAGGCCTTATCACATATATATAC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
28145193 ACTTTCACATTCATCACAACGGCCATTAGGCCT
63 ACTTTCACATTCATCACATCGGCCATTAGGCCT
*
28145226 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACAC
*
28145291 TTTCACATTCATCTCATCGGCCATTAGGCCT
65 TTTCACATTCATCACATCGGCCATTAGGCCT
28145322 TATCACATATATACACTTTCACATTCATCAC
1 TATCACATATATACACTTTCACATTCATCAC
28145353 GTAGAATCCT
Statistics
Matches: 296, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 88 0.30
96 162 0.55
98 46 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (95 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCT
Found at i:28150836 original size:82 final size:81
Alignment explanation
Indices: 28150720--28150875 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
28150710 AAATTGTACA
* * * *
28150720 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
28150784 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
28150801 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
28150866 TGCGAGTTGA
65 TGCGAATTGA
28150876 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:28150843 original size:55 final size:52
Alignment explanation
Indices: 28150719--28150872 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
28150709 TAAATTGTAC
* *
28150719 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
28150772 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
28150827 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
28150873 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:28150877 original size:27 final size:27
Alignment explanation
Indices: 28150720--28150875 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
28150710 AAATTGTACA
*
28150720 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
28150747 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
28150774 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
28150801 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
28150829 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
28150856 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
28150876 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:28150886 original size:27 final size:27
Alignment explanation
Indices: 28150712--28150896 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
28150702 GCGGGATTAA
*
28150712 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
28150739 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
28150766 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
28150793 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
28150821 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
28150848 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
28150875 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
28150897 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:28150887 original size:82 final size:81
Alignment explanation
Indices: 28150712--28150896 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
28150702 GCGGGATTAA
* * * *
28150712 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
28150777 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
28150793 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
28150857 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
28150875 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
28150897 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:28158734 original size:82 final size:81
Alignment explanation
Indices: 28158618--28158773 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
28158608 AAATTGTACA
* * * *
28158618 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
28158682 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
28158699 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
28158764 TGCGAGTTGA
65 TGCGAATTGA
28158774 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:28158741 original size:55 final size:52
Alignment explanation
Indices: 28158617--28158770 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
28158607 TAAATTGTAC
* *
28158617 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
28158670 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
28158725 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
28158771 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:28158775 original size:27 final size:27
Alignment explanation
Indices: 28158618--28158773 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
28158608 AAATTGTACA
*
28158618 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
28158645 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
28158672 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
28158699 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
28158727 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
28158754 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
28158774 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:28158784 original size:27 final size:27
Alignment explanation
Indices: 28158610--28158794 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
28158600 GCGGGATTAA
*
28158610 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
28158637 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
28158664 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
28158691 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
28158719 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
28158746 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
28158773 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
28158795 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:28158785 original size:82 final size:81
Alignment explanation
Indices: 28158610--28158794 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
28158600 GCGGGATTAA
* * * *
28158610 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
28158675 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
28158691 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
28158755 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
28158773 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
28158795 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:28174850 original size:39 final size:40
Alignment explanation
Indices: 28174701--28174969 Score: 350
Period size: 40 Copynumber: 6.8 Consensus size: 40
28174691 CATTTGAATG
* * *
28174701 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
28174741 TTATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
28174781 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
28174821 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
28174860 TTATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
28174899 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
28174938 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
28174970 TTGTGGTTAT
Statistics
Matches: 201, Mismatches: 23, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 97 0.48
40 99 0.49
41 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:28174918 original size:118 final size:119
Alignment explanation
Indices: 28174705--28174989 Score: 468
Period size: 118 Copynumber: 2.4 Consensus size: 119
28174695 TGAATGATAT
* * * *
28174705 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACTCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACTCGAAGGCATTTG
*
28174770 TGCGAGTTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTTGCTATAC
28174824 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGAC-CGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACTCGAAGGCATTTG
28174888 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTTGCTATAC
* * *
28174942 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
28174990 ATTCCGAAGA
Statistics
Matches: 157, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
117 16 0.10
118 93 0.59
119 48 0.31
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACTCGAAGGCATTTG
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTTGCTATAC
Found at i:28189064 original size:27 final size:27
Alignment explanation
Indices: 28189034--28189085 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
28189024 AAGGGCAAAA
* *
28189034 CAGTCATTTTACCCTATAAGGGTATGT
1 CAGTCATTTTACACTACAAGGGTATGT
28189061 CAGTCATTTTACACTACAAGGGTAT
1 CAGTCATTTTACACTACAAGGGTAT
28189086 TTTGGTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:28189096 original size:27 final size:27
Alignment explanation
Indices: 28189034--28189100 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
28189024 AAGGGCAAAA
* * *
28189034 CAGTCATTTTACCCTATAAGGGTATGT
1 CAGTAATTTTACACTACAAGGGTATGT
* *
28189061 CAGTCATTTTACACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATGT
**
28189088 TGGTAATTTTACA
1 CAGTAATTTTACA
28189101 AATTGAGGGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATGT
Found at i:28189109 original size:27 final size:27
Alignment explanation
Indices: 28189079--28189222 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
28189069 TTACACTACA
* *
28189079 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATTG
* **
28189106 AGGGTGTTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATTG
*
28189133 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATTG
* * * *
28189160 AGGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTG
*
28189187 GGGGTATTTCGATAATTTTAC-AATTCG
1 AGGGTATTTCGATAATTTTACAAATT-G
*
28189214 AGAGTATTT
1 AGGGTATTT
28189223 TAGTAATTTC
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.03
27 96 0.97
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATTG
Found at i:28189110 original size:54 final size:54
Alignment explanation
Indices: 28189052--28189209 Score: 167
Period size: 54 Copynumber: 2.9 Consensus size: 54
28189042 TTACCCTATA
* * * *
28189052 AGGGTATGTC-AGTCATTTTAC-ACTACAAGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATGTCGA-TAATTTTACAAAT-CAAGGGTATTTCGATAATTTTACAAATTG
* * *
28189106 AGGGTGTTTCGATAATTTTACAAATCAAGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTG
* * * * **
28189160 AGGGTGTTTCGGTAATTTCACAAATCGGGGGTATTTCGATAATTTTACAA
1 AGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAA
28189210 TTCGAGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 87 0.97
55 3 0.03
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGTATGTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTG
Found at i:28189230 original size:81 final size:81
Alignment explanation
Indices: 28189079--28189231 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 81
28189069 TTACACTACA
* * * * * *
28189079 AGGGTATTTTGGTAATTTTACAAATTGAGGGTGTTTCGATAATTTTACAAATCAAGGGTGTTTCG
1 AGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGAGTGTTTAG
28189144 ATAATTTTACAAATTG
66 ATAATTTTACAAATTG
* * * * *
28189160 AGGGTGTTTCGGTAATTTCACAAATCGGGGGTATTTCGATAATTTTACAATTCGAGAGTATTTTA
1 AGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGAGT-GTTTA
28189225 G-TAATTT
65 GATAATTT
28189232 CTCTTTATTA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 56 0.93
82 4 0.07
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCAAGAGTGTTTAG
ATAATTTTACAAATTG
Found at i:28189715 original size:28 final size:28
Alignment explanation
Indices: 28189548--28189722 Score: 208
Period size: 28 Copynumber: 6.3 Consensus size: 28
28189538 TGGCCCTTTT
* *
28189548 AGGCCCAATCTCGTTCACATGGCCCTTT
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * * *
28189576 AGGCCTAATCTCGTTCACTTGGCCCTTT
1 AGGCCCAATCTCGTTCACATGGCCCATC
* *
28189604 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * * * *
28189632 AGGTCCAATCACATTCATATGGTCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
28189660 -GGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* *
28189687 AGGCCCAATCTCGTTTACATGGCCGATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
28189715 AGGCCCAA
1 AGGCCCAA
28189723 CTACTTCCCA
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
27 22 0.17
28 106 0.83
ACGTcount: A:0.22, C:0.34, G:0.18, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:28192008 original size:43 final size:42
Alignment explanation
Indices: 28191852--28192006 Score: 188
Period size: 43 Copynumber: 3.7 Consensus size: 42
28191842 TGTGTTCTAC
28191852 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATT-CG
* * * * *
28191895 TATAAGACCATGTCTGGGACATCGGCGTCG-TATTTGATTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTCG
* * * *
28191936 TGTAAGACC-CTGTCTGGGATAGTGGCATTGATATGTGATTGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATT-CG
28191979 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
28192007 TGTATAATAT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 24 0.26
42 16 0.17
43 51 0.55
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTCG
Found at i:28195046 original size:25 final size:25
Alignment explanation
Indices: 28195012--28195060 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
28195002 CTCTTCACAT
28195012 TGCTTGAACAAACTAGGCAAATTAG
1 TGCTTGAACAAACTAGGCAAATTAG
*
28195037 TGCTTGAACAAACTAGGCGAATTA
1 TGCTTGAACAAACTAGGCAAATTA
28195061 TACCTTTGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (25 bp):
TGCTTGAACAAACTAGGCAAATTAG
Found at i:28201377 original size:49 final size:49
Alignment explanation
Indices: 28201323--28201422 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
28201313 ACAAATTTGG
28201323 TAGTGTTAATTTAGAAGCAAGATGATAATAATAACTAATTAAATTTAAC
1 TAGTGTTAATTTAGAAGCAAGATGATAATAATAACTAATTAAATTTAAC
28201372 TAGTGTTAATTTAGAAGCAAGATGATAATAATAACTAATTAAATTTAAC
1 TAGTGTTAATTTAGAAGCAAGATGATAATAATAACTAATTAAATTTAAC
28201421 TA
1 TA
28201423 AGTCTACAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (49 bp):
TAGTGTTAATTTAGAAGCAAGATGATAATAATAACTAATTAAATTTAAC
Found at i:28201813 original size:18 final size:18
Alignment explanation
Indices: 28201776--28201814 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
28201766 TTGAAAATCA
*
28201776 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
28201794 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
28201812 AAA
1 AAA
28201815 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:28219735 original size:23 final size:23
Alignment explanation
Indices: 28219691--28219794 Score: 111
Period size: 23 Copynumber: 4.5 Consensus size: 23
28219681 ATCACAGCGT
**
28219691 AGCTGCTAATAGTAACATAGCAA
1 AGCTGCTAATAGTAACGCAGCAA
28219714 TA-CTGCTAATAGTAACGCAGCAA
1 -AGCTGCTAATAGTAACGCAGCAA
* * * *
28219737 TGTTGCTAACAGTAATGCAGCAA
1 AGCTGCTAATAGTAACGCAGCAA
* * *
28219760 AGTTACTAATAGTAACGTAGCAA
1 AGCTGCTAATAGTAACGCAGCAA
28219783 AGCTGCTAATAG
1 AGCTGCTAATAG
28219795 CGGTAAGCGT
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
23 65 0.98
24 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAGCAA
Found at i:28222403 original size:45 final size:45
Alignment explanation
Indices: 28222354--28222475 Score: 199
Period size: 45 Copynumber: 2.7 Consensus size: 45
28222344 GATGTCGATG
*
28222354 TCCCAGATGTGGTCTTACATGAAATCACATATATCGATGCCAACA
1 TCCCAGATGTGGTCTTACACGAAATCACATATATCGATGCCAACA
** * *
28222399 TCCCAGACATGGTCTTACACAAAATCACATATATCGATGCCAACG
1 TCCCAGATGTGGTCTTACACGAAATCACATATATCGATGCCAACA
28222444 TCCCAGATGTGGTCTTACACGAAATCACATAT
1 TCCCAGATGTGGTCTTACACGAAATCACATAT
28222476 CGAAATCCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 69 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (45 bp):
TCCCAGATGTGGTCTTACACGAAATCACATATATCGATGCCAACA
Found at i:28223565 original size:14 final size:16
Alignment explanation
Indices: 28223539--28223571 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
28223529 CAAAGCACGA
28223539 AAATTTCACACAT-AT
1 AAATTTCACACATAAT
28223554 AAATTT-ACACATAAT
1 AAATTTCACACATAAT
28223569 AAA
1 AAA
28223572 CACAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (16 bp):
AAATTTCACACATAAT
Found at i:28226698 original size:22 final size:22
Alignment explanation
Indices: 28226650--28226698 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
28226640 AGATCATTAG
*
28226650 ATTCAATCCGAATAATCTCATC
1 ATTCTATCCGAATAATCTCATC
28226672 ATTCTATCCGAATAATCTCATC
1 ATTCTATCCGAATAATCTCATC
28226694 ATTCT
1 ATTCT
28226699 GGCACCGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTCTATCCGAATAATCTCATC
Found at i:28230110 original size:45 final size:45
Alignment explanation
Indices: 28230056--28230222 Score: 194
Period size: 45 Copynumber: 3.7 Consensus size: 45
28230046 AATGTCGATG
* * * *
28230056 TCCCAGACATGGTCTTACACT-TAACCATATATATGGATGCCAACA
1 TCCCAGACATGGTCTTACA-TGAAATCACATATATCGATGCCAACA
* * * *
28230101 TCCCAGACATGGACGTACATGAAATCACATATATCGATGCTAACG
1 TCCCAGACATGGTCTTACATGAAATCACATATATCGATGCCAACA
*
28230146 TCCTAGACAAT-GTCTTACATGAAATCACATATATCGATGCCAACA
1 TCCCAGAC-ATGGTCTTACATGAAATCACATATATCGATGCCAACA
* **
28230191 TCCCAGACGTGGTCTTACACAAAATCACATAT
1 TCCCAGACATGGTCTTACATGAAATCACATAT
28230223 CAGAATCCTA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
44 2 0.02
45 98 0.96
46 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (45 bp):
TCCCAGACATGGTCTTACATGAAATCACATATATCGATGCCAACA
Found at i:28232458 original size:79 final size:82
Alignment explanation
Indices: 28232347--28232531 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
28232337 GCTACTCGTT
* *
28232347 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
28232410 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
28232427 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
28232490 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
28232507 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
28232532 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:28232531 original size:40 final size:40
Alignment explanation
Indices: 28232328--28232531 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
28232318 CGGAATTTAA
** *
28232328 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
28232368 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
28232408 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
28232447 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
28232487 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
28232527 CCGGA
1 CCGGA
28232532 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:28240708 original size:79 final size:82
Alignment explanation
Indices: 28240597--28240781 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
28240587 GCTACTCGTT
* *
28240597 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
28240660 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
28240677 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
28240740 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
28240757 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
28240782 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:28240781 original size:40 final size:40
Alignment explanation
Indices: 28240578--28240781 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
28240568 CGGAATTTAA
** *
28240578 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
28240618 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
28240658 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
28240697 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
28240737 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
28240777 CCGGA
1 CCGGA
28240782 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:28244565 original size:11 final size:11
Alignment explanation
Indices: 28244549--28244603 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
28244539 CATGATTGAT
28244549 ATGATATGCAC
1 ATGATATGCAC
28244560 ATGATATG---
1 ATGATATGCAC
28244568 ATGATATGCAC
1 ATGATATGCAC
*
28244579 ATGATATG--T
1 ATGATATGCAC
*
28244588 ATGAAATGCAC
1 ATGATATGCAC
28244599 ATGAT
1 ATGAT
28244604 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 8 0.23
9 7 0.20
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:28244573 original size:19 final size:20
Alignment explanation
Indices: 28244530--28244603 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
28244520 ATACGTGGGA
28244530 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
28244547 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
28244568 -ATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
28244587 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
28244604 GTATTCATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
18 8 0.16
19 19 0.37
20 22 0.43
21 2 0.04
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:28244583 original size:39 final size:37
Alignment explanation
Indices: 28244531--28244603 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
28244521 TACGTGGGAT
*
28244531 ATGATATACATGAT-TGATATGATATGCACATGATATG
1 ATGATATACATGATATG-TATGAAATGCACATGATATG
28244568 ATGATATGCACATGATATGTATGAAATGCACATGAT
1 ATGATAT--ACATGATATGTATGAAATGCACATGAT
28244604 GTATTCATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 7 0.22
39 23 0.72
40 2 0.06
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (37 bp):
ATGATATACATGATATGTATGAAATGCACATGATATG
Found at i:28244724 original size:25 final size:26
Alignment explanation
Indices: 28244653--28244800 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
28244643 GAGGAAGTGC
*
28244653 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
28244679 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
28244705 AAAAGGGCTT-TGCCCCAGTTCATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
28244730 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
28244756 AAAAGGACTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
28244781 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
28244801 ATTAAAAGAG
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
25 55 0.49
26 57 0.51
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Done.